Chr	Position	Editing	Strand	Ensembl_ID	Gene_name	Gene_type	Genomic_region	AA_change	Amino_Acid	Repeat	AN55
9	277009	A->G	+	ENSG00000107099	DOCK8	protein_coding	CDS	non_coding_transcript_exon_variant	.	Alu	0.538462
4	2938299	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.350877
4	2938304	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.Gln->Arg	Alu	0.0634921
19	8492024	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	upstream_gene_variant	.	Alu	0.857143
10	12456631	A->G	+	ENSG00000252118	RNU6ATAC39P	snRNA	Intron	splice_region_variant&non_coding_transcript_exon_variant	.	Alu	0.214286
21	33262566	A->G	+	ENSG00000159110	IFNAR2	protein_coding	CDS	synonymous_variant	p.Gln->Gln	Alu	0.0540541
21	33262623	A->G	+	ENSG00000159110	IFNAR2	protein_coding	CDS	synonymous_variant	p.Leu->Leu	Alu	0.0555556
12	50153870	A->G	-	ENSG00000139624	CERS5	protein_coding	Intron	non_coding_transcript_exon_variant	.	Alu	0.6
11	65090498	A->G	+	ENSG00000149823	VPS51	protein_coding	CDS	missense_variant	p.Lys->Arg	Alu	0.181818
3	69076412	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	synonymous_variant	p.Thr->Thr	Alu	0.307692
3	69076414	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Thr->Ala	Alu	0.153846
3	69076473	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.230769
3	69076497	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.333333
X	154011115	A->G	-	ENSG00000184216	IRAK1	protein_coding	CDS	missense_variant&splice_region_variant	p.Gln->Arg	Alu	0.0566038
2	177227941	A->G	+	ENSG00000116044	NFE2L2	protein_coding	CDS	.	.	Alu	0.0869565
19	2291978	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.304348
19	2292005	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.357143
19	3540008	A->G	-	ENSG00000183397	C19orf71	protein_coding	five_prime_utr	.	.	Alu	0.25
19	3540017	A->G	-	ENSG00000183397	C19orf71	protein_coding	five_prime_utr	.	.	Alu	0.3125
19	3540034	A->G	-	ENSG00000183397	C19orf71	protein_coding	five_prime_utr	.	.	Alu	0.166667
19	6379035	A->G	-	ENSG00000125650	PSPN	protein_coding	five_prime_utr	.	.	Alu	0.769231
3	9987030	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.05
3	9987037	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.0540541
3	9987093	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.169231
19	11865967	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.321429
19	11865972	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.0740741
19	11866000	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.105263
8	38463157	A->G	-	ENSG00000077782	FGFR1	protein_coding	five_prime_utr	.	.	Alu	0.181818
19	48461317	A->G	+	ENSG00000182324	KCNJ14	protein_coding	five_prime_utr	.	.	Alu	0.272727
19	48461318	A->G	+	ENSG00000182324	KCNJ14	protein_coding	five_prime_utr	.	.	Alu	0.727273
3	49086999	A->G	-	ENSG00000198218	QRICH1	protein_coding	five_prime_utr	.	.	Alu	0.4
12	56731526	A->G	-	ENSG00000196531	NACA	protein_coding	five_prime_utr	.	.	Alu	0.235294
12	56731531	A->G	-	ENSG00000196531	NACA	protein_coding	five_prime_utr	.	.	Alu	0.125
12	56731538	A->G	-	ENSG00000196531	NACA	protein_coding	five_prime_utr	.	.	Alu	0.307692
7	66740100	A->G	-	ENSG00000284461	AC027644.4	protein_coding	five_prime_utr	.	.	Alu	0.333333
10	72220165	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.111111
10	72220170	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.157895
10	72220171	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.15
10	72220172	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.0952381
10	72220174	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.0869565
10	72220179	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.0833333
10	72220218	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.0909091
10	72220248	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.214286
10	72220261	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.116279
3	142126246	A->G	-	ENSG00000114126	TFDP2	protein_coding	five_prime_utr	.	.	Alu	0.181818
16	192571	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.181818
16	192601	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.142857
16	192667	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.2
16	192680	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.2
16	192682	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.4
16	192704	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.363636
16	196799	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.153846
16	196800	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.153846
16	216494	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.125
16	221092	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.0625
16	221093	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.40625
16	221098	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.214286
16	221248	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.105263
16	221324	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.166667
9	276886	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.8
9	276889	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.3
9	276972	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.266667
9	276973	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.2
9	277254	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.545455
9	277278	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.214286
9	277304	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.636364
9	277334	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.3
9	277346	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.7
9	277387	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.153846
9	277404	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.117647
5	278592	A->G	+	ENSG00000249915	PDCD6	protein_coding	Intergenic	.	.	Alu	0.166667
5	278602	A->G	+	ENSG00000249915	PDCD6	protein_coding	Intergenic	.	.	Alu	0.181818
17	398800	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
17	400428	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
17	400429	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
17	400454	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
17	400825	A->G	-	.	.	.	Intergenic	.	.	Alu	0.444444
9	425722	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.3
16	498002	A->G	+	ENSG00000090565	RAB11FIP3	protein_coding	Intergenic	.	.	Alu	0.272727
16	499719	A->G	+	ENSG00000090565	RAB11FIP3	protein_coding	Intergenic	.	.	Alu	0.3
16	500567	A->G	+	ENSG00000090565	RAB11FIP3	protein_coding	Intergenic	.	.	Alu	1
16	500568	A->G	+	ENSG00000090565	RAB11FIP3	protein_coding	Intergenic	.	.	Alu	1
16	500577	A->G	+	ENSG00000090565	RAB11FIP3	protein_coding	Intergenic	.	.	Alu	0.272727
16	500584	A->G	+	ENSG00000090565	RAB11FIP3	protein_coding	Intergenic	.	.	Alu	0.181818
16	587945	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
18	683964	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.125
18	684027	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.2
18	684029	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.333333
18	684132	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.181818
18	684267	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.416667
18	696483	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.25
18	696969	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.153846
18	697070	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.272727
18	697071	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.181818
18	697494	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.272727
18	697507	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.352941
18	697533	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.173913
18	697534	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.117647
18	697579	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.631579
18	697585	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.315789
18	697594	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.157895
18	697602	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.111111
18	697616	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.2
18	697841	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.666667
18	697891	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.6
18	697914	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	1
18	697917	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.129032
18	697931	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.137931
18	697932	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.107143
18	697958	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.0869565
18	697976	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.129032
18	697987	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.09375
18	698045	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.238095
18	698066	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.105263
8	708853	A->G	-	ENSG00000104714	ERICH1	protein_coding	Intergenic	.	.	Alu	0.181818
12	764460	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.125
12	764478	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	764480	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.130435
12	764489	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.0869565
12	764513	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.653846
12	764515	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.269231
12	764521	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.12
12	764525	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.148148
12	764557	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.0967742
12	764939	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.214286
18	787197	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.153846
18	787205	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.105263
18	787228	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.0689655
18	787232	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.0625
18	787264	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	1
18	787268	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.107143
18	787279	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.666667
18	787282	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.24
18	787292	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.0769231
18	787453	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.166667
18	787484	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.2
18	787562	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.277778
18	787566	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.4
18	787582	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.08
18	787598	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.2
18	787628	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.5
18	787629	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.25
18	787634	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.333333
11	927601	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.4
11	927606	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.466667
11	927665	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.2
11	927666	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.272727
11	927667	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.181818
11	927688	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.3
11	927734	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.2
11	927752	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.375
7	970073	A->G	-	ENSG00000240230	COX19	protein_coding	Intergenic	.	.	Alu	0.166667
7	970095	A->G	-	ENSG00000240230	COX19	protein_coding	Intergenic	.	.	Alu	0.142857
12	1297446	A->G	+	ENSG00000082805	ERC1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	1297447	A->G	+	ENSG00000082805	ERC1	protein_coding	Intergenic	.	.	Alu	0.0952381
16	1322920	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.461538
17	1354934	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.117647
X	1357055	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1357090	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1357091	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.133333
X	1360657	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.230769
X	1360728	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.214286
X	1361495	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.125
X	1363805	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.25
X	1363812	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1363848	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1363858	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.727273
X	1363867	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1363926	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.416667
X	1364235	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1364247	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1364257	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.363636
X	1364329	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.461538
X	1364447	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.214286
X	1364563	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.434783
X	1364674	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.1875
X	1364677	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.294118
X	1364681	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0909091
X	1377243	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.166667
X	1377308	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
X	1377309	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.384615
X	1382837	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1382912	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
X	1382916	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
X	1382959	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
X	1383012	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383120	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1383184	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
X	1383214	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
X	1383215	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
X	1383237	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
X	1383364	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
X	1383408	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1
X	1383415	A->G	-	.	.	.	Intergenic	.	.	Alu	0.318182
X	1383434	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
X	1383460	A->G	-	.	.	.	Intergenic	.	.	Alu	0.384615
X	1383461	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
X	1383467	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1383483	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
X	1383515	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
X	1383524	A->G	-	.	.	.	Intergenic	.	.	Alu	0.352941
X	1383525	A->G	-	.	.	.	Intergenic	.	.	Alu	0.411765
X	1383567	A->G	-	.	.	.	Intergenic	.	.	Alu	0.571429
X	1383593	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
X	1384997	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1385005	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
X	1385006	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
X	1385022	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
17	1387760	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.142857
17	1387961	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0666667
17	1388010	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0416667
17	1388011	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.08
17	1388015	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0425532
17	1388022	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.5
17	1388023	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.047619
17	1388063	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.346154
17	1388064	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.08
17	1388166	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.923077
17	1388167	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.615385
17	1388170	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.266667
17	1388203	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.4
17	1388282	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.133333
17	1388352	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.363636
17	1388392	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.166667
17	1388394	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.238095
17	1388404	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.181818
17	1388416	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0740741
17	1388447	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0909091
17	1388459	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0869565
17	1388662	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.136364
17	1389628	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.125
17	1389825	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0909091
1	1396395	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.176471
1	1396405	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.125
1	1396431	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.2
1	1396469	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.117647
1	1396473	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.117647
1	1396539	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.3125
1	1396541	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.3125
1	1396717	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.307692
17	1447732	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.214286
17	1447733	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.571429
17	1447754	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.166667
1	1652864	A->G	-	ENSG00000248333	CDK11B	protein_coding	Intergenic	.	.	Alu	0.166667
1	1653080	A->G	-	ENSG00000248333	CDK11B	protein_coding	Intergenic	.	.	Alu	0.4
12	1695620	A->G	+	ENSG00000006831	ADIPOR2	protein_coding	Intergenic	.	.	Alu	0.2
4	1701855	A->G	-	ENSG00000163950	SLBP	protein_coding	Intergenic	.	.	Alu	0.333333
16	1752664	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.166667
16	1754502	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.166667
16	1754664	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.3
16	1754716	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.1875
16	1754723	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.117647
1	1862577	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	1871419	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.818182
1	1872064	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.125
1	1872094	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.105263
1	1872107	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.157895
1	1872153	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.363636
1	1872176	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.210526
1	1872220	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.307692
1	1884204	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	1884237	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	1884280	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	1884344	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	1884349	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1884350	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.266667
4	1885003	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.3
1	1886061	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.266667
1	1886067	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.214286
1	1886190	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.157895
1	1886194	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.105263
1	1886196	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.1
1	1886218	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	1886235	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.130435
1	1886261	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0769231
1	1886300	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.458333
1	1886304	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.48
4	1894425	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.727273
4	1894435	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.727273
4	1894463	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.153846
4	1894497	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.470588
4	1894526	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.684211
4	1894530	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.388889
4	1894561	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.181818
4	1894597	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.181818
9	2033991	A->G	+	ENSG00000080503	SMARCA2	protein_coding	Intergenic	.	.	Alu	0.0454545
9	2034036	A->G	+	ENSG00000080503	SMARCA2	protein_coding	Intergenic	.	.	Alu	0.0731707
17	2038038	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.2
17	2038111	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.5
17	2038204	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.307692
17	2038218	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.545455
17	2038245	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.727273
17	2038307	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.153846
16	2225724	A->G	+	ENSG00000167967	E4F1	protein_coding	Intergenic	.	.	Alu	0.2
16	2225841	A->G	+	ENSG00000167967	E4F1	protein_coding	Intergenic	.	.	Alu	0.142857
16	2225884	A->G	+	ENSG00000167967	E4F1	protein_coding	Intergenic	.	.	Alu	0.4
16	2225910	A->G	+	ENSG00000167967	E4F1	protein_coding	Intergenic	.	.	Alu	0.454545
16	2259700	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.25
16	2259745	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	2259777	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.157895
16	2260241	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.2
16	2260248	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	1
16	2260288	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.111111
16	2260320	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.1
16	2260332	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.0740741
16	2260335	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.222222
16	2260337	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.0714286
16	2260338	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.517241
6	2282969	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.105263
19	2284853	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.416667
19	2292026	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.2
19	2292077	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.210526
19	2292081	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.315789
19	2292113	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.5
19	2292287	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.117647
19	2292291	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.133333
19	2292318	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.142857
19	2292323	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.117647
19	2292533	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.214286
6	2294443	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.909091
6	2294458	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.6
6	2294470	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.181818
6	2294614	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.2
6	2294635	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.545455
6	2294640	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.666667
6	2294641	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.923077
6	2294670	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.266667
6	2294726	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	1
6	2294732	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.272727
4	2473186	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.142857
4	2473196	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.105263
4	2474333	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.181818
4	2493527	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.142857
4	2493565	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.272727
4	2499953	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.307692
4	2500037	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0869565
4	2500038	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0869565
4	2500054	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.08
4	2500060	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2502750	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2502871	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.166667
4	2502882	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.608696
4	2502899	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0909091
4	2502930	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.470588
4	2543647	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0909091
4	2543671	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2543681	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0869565
4	2543692	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.130435
4	2543747	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0909091
4	2543751	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.08
4	2543760	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0769231
4	2543778	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.125
4	2543779	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0909091
4	2543825	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.357143
4	2543827	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.230769
4	2558152	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.3
17	2611347	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.230769
17	2631159	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.230769
18	2662413	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.125
18	2662421	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.117647
X	2730782	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.153846
X	2730837	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.142857
4	2731460	A->G	+	ENSG00000125386	FAM193A	protein_coding	Intergenic	.	.	Alu	0.2
X	2744728	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
X	2744736	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
X	2744737	A->G	+	.	.	.	Intergenic	.	.	Alu	0.705882
X	2744742	A->G	+	.	.	.	Intergenic	.	.	Alu	0.375
7	2756910	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.181818
7	2756946	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.230769
7	2756955	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.2
7	2756956	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.333333
7	2756979	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.294118
7	2757027	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.407407
7	2757028	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.923077
7	2757064	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.157895
7	2757069	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.85
7	2757071	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.1
7	2757318	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.333333
7	2757330	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.1
18	2785531	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.117647
18	2851341	A->G	+	ENSG00000132205	EMILIN2	protein_coding	Intergenic	.	.	Alu	0.166667
18	2851355	A->G	+	ENSG00000132205	EMILIN2	protein_coding	Intergenic	.	.	Alu	0.307692
20	2892210	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.117647
20	2892211	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.117647
20	2904535	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.2
11	2986750	A->G	-	ENSG00000205531	NAP1L4	protein_coding	Intergenic	.	.	Alu	0.181818
10	3075653	A->G	+	ENSG00000067057	PFKP	protein_coding	Intergenic	.	.	Alu	0.214286
10	3075661	A->G	+	ENSG00000067057	PFKP	protein_coding	Intergenic	.	.	Alu	0.615385
10	3075724	A->G	+	ENSG00000067057	PFKP	protein_coding	Intergenic	.	.	Alu	0.25
10	3075725	A->G	+	ENSG00000067057	PFKP	protein_coding	Intergenic	.	.	Alu	0.583333
10	3075825	A->G	+	ENSG00000067057	PFKP	protein_coding	Intergenic	.	.	Alu	0.277778
4	3140202	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.153846
4	3140210	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.2
19	3181593	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
19	3182378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
19	3183383	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
19	3183723	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
19	3183724	A->G	+	.	.	.	Intergenic	.	.	Alu	0.235294
19	3183741	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
19	3183763	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
4	3185688	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.272727
4	3185736	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.2
4	3185763	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.125
4	3185792	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.272727
4	3185896	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.2
4	3190232	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.133333
4	3190468	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.3
16	3463319	A->G	+	ENSG00000122390	NAA60	protein_coding	Intergenic	.	.	Alu	0.272727
9	3470599	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.1875
9	3470600	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.1875
19	3484160	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3484161	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
19	3484250	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
19	3484742	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
9	3501629	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.2
2	3541908	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.25
2	3541961	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.25
11	3701327	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.0666667
11	3701328	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.1
11	3701399	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.125
11	3701814	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.615385
11	3701818	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.190476
11	3701822	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.097561
11	3701824	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.675
11	3716440	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.2
11	3722205	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.1875
11	3722209	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.769231
11	3722233	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.190476
11	3722257	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.133333
11	3722273	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.25
11	3722277	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.142857
11	3722333	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.428571
11	3782681	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.08
11	3782707	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.307692
11	3782737	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.272727
11	3789698	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.166667
11	3789877	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.3
11	3789978	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.166667
11	3794677	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.25
11	3886882	A->G	+	ENSG00000167323	STIM1	protein_coding	Intergenic	.	.	Alu	0.333333
11	3886891	A->G	+	ENSG00000167323	STIM1	protein_coding	Intergenic	.	.	Alu	0.181818
11	3886908	A->G	+	ENSG00000167323	STIM1	protein_coding	Intergenic	.	.	Alu	0.2
11	3886990	A->G	+	ENSG00000167323	STIM1	protein_coding	Intergenic	.	.	Alu	0.3
17	3902458	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.2
17	3902489	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.142857
17	3909239	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.2
17	3909630	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.3
17	3911107	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.210526
17	3911111	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.136364
17	3911115	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0833333
17	3911187	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.117647
17	3911206	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.205882
17	3911215	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.138889
17	3911237	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0612245
17	3911260	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0444444
17	3911276	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.272727
20	3912702	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.2
20	3912703	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.4
20	3912740	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.142857
20	3912764	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.117647
20	3912768	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.533333
20	3912794	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.352941
20	3912800	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.105263
20	3912829	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.4375
20	3912865	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.157895
20	3912906	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.363636
20	3981582	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.176471
20	3981617	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.666667
20	3981634	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.117647
20	3981644	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.6
20	3981670	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.2
20	3985817	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.190476
20	3985850	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.157895
20	3985876	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.1
20	3985877	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.0952381
20	3986363	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.307692
20	3986372	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.4
20	3986390	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.266667
20	3986411	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.2
20	3986438	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.125
20	3986475	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.153846
20	3986787	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.285714
20	4003735	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.181818
20	4003740	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.333333
6	4036363	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.5
6	4036411	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.428571
6	4036422	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.363636
6	4036427	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.272727
6	4036442	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.2
6	4036654	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.142857
6	4036805	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.684211
11	4097029	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.5
11	4097030	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.214286
11	4097134	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.181818
11	4097166	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.307692
11	4097188	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.285714
11	4097192	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.2
11	4114357	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.133333
11	4114390	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.125
11	4114470	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.214286
11	4114478	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.25
11	4114507	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.117647
11	4114513	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.176471
11	4114540	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.153846
11	4114546	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.384615
17	4339357	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.444444
17	4339373	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.4
17	4339381	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.454545
17	4339401	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.333333
17	4339442	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.391304
17	4339443	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.727273
17	4339469	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.25
17	4339522	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.241379
17	4339727	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.6
17	4339786	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.625
17	4339787	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.125
17	4339792	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.142857
17	4347572	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.0869565
17	4347623	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.1
17	4347639	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.0869565
16	4348767	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.181818
16	4348780	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.3
16	4348794	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.333333
16	4348807	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.166667
16	4348812	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.181818
16	4348850	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.3
17	4353661	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
20	4693833	A->G	+	ENSG00000171867	PRNP	protein_coding	Intergenic	.	.	Alu	0.2
20	4693835	A->G	+	ENSG00000171867	PRNP	protein_coding	Intergenic	.	.	Alu	0.5
3	4726282	A->G	+	ENSG00000150995	ITPR1	protein_coding	Intergenic	.	.	Alu	0.04
9	4738874	A->G	-	ENSG00000147853	AK3	protein_coding	Intergenic	.	.	Alu	0.307692
3	4802560	A->G	+	ENSG00000150995	ITPR1	protein_coding	Intergenic	.	.	Alu	0.2
16	4816720	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.111111
16	4816738	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.35
16	4816740	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.111111
16	4817029	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.4
16	4817046	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.153846
16	4817068	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.55
16	4817072	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	4817082	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.176471
16	4817100	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.133333
16	4848891	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.0833333
16	4848980	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	4848986	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.346154
16	4848990	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.08
16	4849007	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.111111
16	4849045	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	4849074	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.125
16	4849686	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.142857
16	4849726	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.333333
16	4849727	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.8125
3	5127695	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0833333
3	5127696	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0869565
3	5127722	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.103448
3	5127723	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.137931
3	5127752	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.484848
3	5127918	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.142857
3	5127919	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.208333
3	5127934	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.1
3	5127935	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.15625
3	5127970	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0714286
3	5127973	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.103448
3	5127978	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.125
3	5128114	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.176471
3	5128115	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.166667
3	5133848	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.181818
3	5159149	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.3
3	5159166	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.166667
3	5159427	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.142857
3	5159438	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.2
3	5159455	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.105263
3	5159481	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.190476
3	5159482	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.210526
3	5159508	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.285714
3	5159552	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.1875
7	5196992	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0666667
7	5197005	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.05
7	5197018	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0487805
7	5197033	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.209302
7	5197040	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.075
7	5321943	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	1
7	5321944	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5330350	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5366448	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.181818
17	5374760	A->G	-	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.3
17	5374914	A->G	-	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.266667
17	5397083	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.2
17	5398061	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.111111
17	5398178	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.0645161
7	5398465	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.285714
17	5398542	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.111111
17	5398727	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.153846
17	5398864	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.0769231
17	5398985	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.2
17	5399086	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.0833333
17	5399164	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.159091
7	5414541	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5414545	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5414551	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.307692
7	5415491	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5415510	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.428571
7	5415515	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.75
7	5415516	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.25
7	5415618	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.285714
7	5415627	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5415662	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
17	5487196	A->G	+	ENSG00000167842	MIS12	protein_coding	Intergenic	.	.	Alu	0.307692
20	5601267	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.181818
20	5601507	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.133333
20	5601533	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.133333
20	5601569	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.2
20	5601570	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.2
19	5655276	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.181818
7	5684234	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.166667
7	5684241	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.2
19	5703060	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.2
19	5709070	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.533333
19	5709078	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.473684
19	5715751	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.416667
19	5715770	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.2
19	5715800	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.5
19	5715803	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.2
7	5742692	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.2
7	5742693	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.3
7	5742733	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.133333
7	5742736	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.428571
7	6129437	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.3
7	6129611	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.2
7	6135530	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.357143
7	6135612	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.285714
10	6159539	A->G	+	ENSG00000170525	PFKFB3	protein_coding	Intergenic	.	.	Alu	0.2
7	6246172	A->G	-	ENSG00000008256	CYTH3	protein_coding	Intergenic	.	.	Alu	0.307692
7	6246173	A->G	-	ENSG00000008256	CYTH3	protein_coding	Intergenic	.	.	Alu	0.142857
7	6246270	A->G	-	ENSG00000008256	CYTH3	protein_coding	Intergenic	.	.	Alu	0.181818
7	6386562	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.181818
7	6397063	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.142857
7	6397120	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	1
7	6397750	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.15
7	6397779	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.25
7	6397826	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.214286
7	6397868	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.153846
7	6419146	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.2
7	6428624	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.25
7	6428625	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.25
9	6441180	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.125
9	6441188	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.625
9	6488054	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.15
9	6488055	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.190476
9	6488062	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.105263
9	6488093	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.1875
9	6488122	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.235294
9	6488132	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.133333
9	6488149	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.133333
9	6488163	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.142857
1	6647329	A->G	-	ENSG00000007923	DNAJC11	protein_coding	Intergenic	.	.	Alu	0.166667
1	6647347	A->G	-	ENSG00000007923	DNAJC11	protein_coding	Intergenic	.	.	Alu	0.272727
4	6786928	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.166667
4	6787060	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.7
4	6787127	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.157895
4	6787131	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.111111
1	6844535	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.263158
1	6844549	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.423077
1	6844565	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.129032
1	6849914	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.214286
1	6849915	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.214286
1	6849995	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.125
6	7219149	A->G	+	ENSG00000124782	RREB1	protein_coding	Intergenic	.	.	Alu	0.2
19	7392863	A->G	+	ENSG00000268861	AC008878.3	protein_coding	Intergenic	.	.	Alu	0.5
19	7392904	A->G	+	ENSG00000268861	AC008878.3	protein_coding	Intergenic	.	.	Alu	0.3
17	7472435	A->G	-	ENSG00000174282	ZBTB4	protein_coding	Intergenic	.	.	Alu	0.181818
17	7472606	A->G	-	ENSG00000174282	ZBTB4	protein_coding	Intergenic	.	.	Alu	0.266667
19	7976925	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.3
20	8229981	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.272727
17	8271741	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
17	8272077	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
17	8272119	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
1	8403929	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.166667
1	8403955	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.411765
1	8403963	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.388889
1	8403968	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.555556
1	8403995	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8404004	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8404062	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.25
1	8404066	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.192308
1	8404079	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.384615
1	8404268	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.615385
1	8404269	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.928571
1	8404293	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.291667
1	8404295	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.285714
1	8404305	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.304348
1	8404371	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.0952381
20	8436267	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.111111
17	8455647	A->G	+	ENSG00000166579	NDEL1	protein_coding	Intergenic	.	.	Alu	0.0869565
17	8455684	A->G	+	ENSG00000166579	NDEL1	protein_coding	Intergenic	.	.	Alu	0.142857
19	8472024	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.1
19	8472077	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.0555556
19	8472744	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.307692
19	8472748	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.133333
19	8472762	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.153846
19	8480326	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.307692
19	8480339	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.235294
1	8480410	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.133333
19	8480464	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.375
19	8492037	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.105263
19	8492047	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.2
19	8492060	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.0714286
19	8492069	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.275862
19	8492118	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.133333
19	8492138	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.166667
19	8492538	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	1
19	8493858	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.105263
19	8493873	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.130435
19	8493890	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.291667
19	8494667	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.105263
19	8494705	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.227273
19	8494717	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.157895
19	8495162	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.454545
20	8496397	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.166667
19	8497209	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.153846
19	8497289	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.785714
19	8497290	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.142857
19	8497292	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.214286
19	8497294	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.266667
19	8497317	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.166667
19	8497488	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.181818
19	8497493	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.727273
1	8529444	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.153846
1	8545821	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8545929	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.5
1	8545969	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.4
1	8582480	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.0952381
1	8582530	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.111111
1	8582645	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.173913
1	8582658	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.125
1	8582708	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.3125
1	8600983	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.3
1	8601112	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.111111
1	8601176	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.181818
1	8601206	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.214286
1	8601211	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8601221	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.125
20	8604138	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	8607624	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.4375
1	8607635	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.352941
1	8607674	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.347826
1	8607678	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	1
1	8607764	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.0833333
1	8607802	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.111111
1	8607811	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.307692
1	8607812	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.0952381
1	8607822	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.380952
1	8607841	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.105263
1	8607846	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.2
1	8607854	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.277778
1	8607858	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8607863	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.294118
1	8607864	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.117647
1	8607893	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8607919	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.266667
1	8607957	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.117647
1	8607993	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.111111
1	8607999	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.176471
1	8608001	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.352941
18	8616814	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.275862
18	8616818	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.423077
18	8616831	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.130435
18	8616835	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0833333
18	8616849	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.695652
18	8616874	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0606061
18	8616877	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0606061
18	8616911	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.173913
18	8616913	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.666667
18	8632131	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.153846
18	8632157	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.133333
18	8632158	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.133333
1	8813865	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.181818
18	9156088	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.3
11	9162840	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1
11	9194858	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.166667
11	9194864	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.142857
11	9194892	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.125
11	9194895	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9230001	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.111111
11	9230047	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.217391
11	9230357	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9230379	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.166667
11	9230381	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.153846
11	9230420	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.461538
11	9230474	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.333333
11	9238505	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.153846
11	9238943	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0869565
11	9238969	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.105263
11	9239088	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.181818
11	9239434	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.230769
11	9239588	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.166667
11	9239605	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.5
11	9239621	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.4
11	9263257	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9263313	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.25
11	9263358	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.166667
11	9263403	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.142857
11	9263494	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9285311	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.153846
11	9289125	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.7
11	9289135	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.25
11	9289173	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.133333
11	9289216	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.545455
11	9289224	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.142857
11	9289263	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.25
11	9289276	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.666667
11	9293782	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.363636
11	9293801	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.2
18	9340202	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.4
18	9365958	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.3
18	9375010	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.25
18	9375020	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.2
18	9375046	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.6
11	9443757	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.153846
11	9444492	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.357143
11	9444497	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.615385
11	9444639	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.166667
11	9444658	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.125
11	9444786	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.4
2	9506469	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.466667
2	9507991	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.3
2	9523990	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.2
19	9532421	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.387097
19	9532441	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.227273
19	9532464	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.133333
19	9532465	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.3125
19	9532474	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.125
19	9532476	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.111111
19	9532501	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.133333
2	9532537	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.315789
2	9532539	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.210526
2	9532544	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.142857
2	9532561	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.1875
19	9532569	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.117647
19	9532576	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.294118
19	9532592	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.181818
1	9562335	A->G	+	ENSG00000171612	SLC25A33	protein_coding	Intergenic	.	.	Alu	0.2
1	9564849	A->G	+	ENSG00000171612	SLC25A33	protein_coding	Intergenic	.	.	Alu	0.2
19	9569561	A->G	-	ENSG00000197961	ZNF121	protein_coding	Intergenic	.	.	Alu	0.181818
19	9569567	A->G	-	ENSG00000197961	ZNF121	protein_coding	Intergenic	.	.	Alu	0.5
19	9569628	A->G	-	ENSG00000197961	ZNF121	protein_coding	Intergenic	.	.	Alu	0.7
19	9569634	A->G	-	ENSG00000197961	ZNF121	protein_coding	Intergenic	.	.	Alu	0.454545
2	9593341	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.466667
2	9593347	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.5
2	9597403	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.2
2	9597454	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.125
2	9597483	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.133333
2	9597524	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.384615
2	9597534	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.230769
2	9597563	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.25
2	9597564	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.166667
2	9597958	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.6
2	9598037	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.3125
2	9598052	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.0869565
2	9598085	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.125
2	9607102	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.0769231
2	9607153	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.142857
2	9607154	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.297297
2	9618605	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.166667
2	9618789	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.105263
1	9674912	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.2
1	9704577	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.3
1	9705376	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.2
1	9705418	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.153846
1	9705443	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.368421
1	9705463	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.176471
1	9705480	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	1
11	9718971	A->G	+	ENSG00000133789	SWAP70	protein_coding	Intergenic	.	.	Alu	0.2
1	9818146	A->G	-	ENSG00000171603	CLSTN1	protein_coding	Intergenic	.	.	Alu	0.142857
11	9833496	A->G	-	ENSG00000133812	SBF2	protein_coding	Intergenic	.	.	Alu	0.117647
11	9833532	A->G	-	ENSG00000133812	SBF2	protein_coding	Intergenic	.	.	Alu	0.133333
11	9833559	A->G	-	ENSG00000133812	SBF2	protein_coding	Intergenic	.	.	Alu	0.181818
11	9833585	A->G	-	ENSG00000133812	SBF2	protein_coding	Intergenic	.	.	Alu	0.133333
11	9837834	A->G	-	ENSG00000133812	SBF2	protein_coding	Intergenic	.	.	Alu	0.125
11	9837902	A->G	-	ENSG00000133812	SBF2	protein_coding	Intergenic	.	.	Alu	0.111111
1	9927962	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.181818
1	9928037	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.25
1	9928049	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.6
1	9928072	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.272727
1	9928080	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.272727
19	10145867	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.181818
3	10152222	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
3	10152258	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
3	10152265	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0416667
3	10152294	A->G	+	.	.	.	Intergenic	.	.	Alu	0.157895
3	10152310	A->G	+	.	.	.	Intergenic	.	.	Alu	0.186047
3	10152314	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0487805
3	10152321	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
3	10152326	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
3	10152356	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
3	10152557	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
3	10152570	A->G	+	.	.	.	Intergenic	.	.	Alu	0.875
3	10152593	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
3	10152622	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
3	10152632	A->G	+	.	.	.	Intergenic	.	.	Alu	0.642857
3	10152645	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
3	10152672	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
3	10152689	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
3	10152692	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
3	10152871	A->G	+	.	.	.	Intergenic	.	.	Alu	0.428571
3	10152909	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
3	10152942	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
3	10152957	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
3	10152965	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
3	10152966	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
3	10152967	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
3	10153021	A->G	+	.	.	.	Intergenic	.	.	Alu	0.148148
3	10153022	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0740741
3	10153044	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
3	10153060	A->G	+	.	.	.	Intergenic	.	.	Alu	0.108696
3	10153065	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0434783
3	10153100	A->G	+	.	.	.	Intergenic	.	.	Alu	0.27027
3	10153126	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0408163
3	10153127	A->G	+	.	.	.	Intergenic	.	.	Alu	0.102041
3	10153128	A->G	+	.	.	.	Intergenic	.	.	Alu	0.108696
3	10153131	A->G	+	.	.	.	Intergenic	.	.	Alu	0.06
3	10153157	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10153167	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
3	10153184	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0357143
3	10153198	A->G	+	.	.	.	Intergenic	.	.	Alu	0.163934
3	10153199	A->G	+	.	.	.	Intergenic	.	.	Alu	0.109091
3	10153206	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
3	10153219	A->G	+	.	.	.	Intergenic	.	.	Alu	0.115385
3	10153249	A->G	+	.	.	.	Intergenic	.	.	Alu	0.116279
3	10153280	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0588235
3	10153281	A->G	+	.	.	.	Intergenic	.	.	Alu	1
3	10153294	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0425532
3	10153295	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
3	10153299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.06
3	10153300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
3	10153301	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0425532
3	10153304	A->G	+	.	.	.	Intergenic	.	.	Alu	0.108696
3	10153349	A->G	+	.	.	.	Intergenic	.	.	Alu	0.18
3	10153350	A->G	+	.	.	.	Intergenic	.	.	Alu	0.102041
3	10153370	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0789474
3	10153378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
3	10153379	A->G	+	.	.	.	Intergenic	.	.	Alu	0.09375
3	10153381	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
3	10153384	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16
3	10153386	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
3	10153408	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
3	10153411	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0740741
3	10153412	A->G	+	.	.	.	Intergenic	.	.	Alu	1
19	10167231	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.111111
19	10167258	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.0666667
19	10167272	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.0588235
19	10167292	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.1
19	10167298	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.136364
19	10167469	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.133333
19	10168011	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.238095
19	10168037	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.0952381
19	10168076	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.133333
19	10168087	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.545455
2	10174720	A->G	+	ENSG00000284681	AC007240.1	protein_coding	Intergenic	.	.	Alu	0.2
2	10174724	A->G	+	ENSG00000284681	AC007240.1	protein_coding	Intergenic	.	.	Alu	0.181818
2	10174746	A->G	+	ENSG00000284681	AC007240.1	protein_coding	Intergenic	.	.	Alu	0.181818
2	10199526	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.210526
2	10199527	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.157895
2	10199669	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.105263
2	10199689	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.2
2	10199908	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.117647
2	10199974	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.181818
2	10199978	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.166667
2	10200007	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.0952381
2	10200013	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.2
2	10200030	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.166667
2	10200033	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.461538
2	10200076	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.266667
2	10200085	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.666667
2	10200094	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.166667
2	10200095	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.153846
2	10200107	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.285714
3	10309048	A->G	-	ENSG00000157020	SEC13	protein_coding	Intergenic	.	.	Alu	0.3
3	10309066	A->G	-	ENSG00000157020	SEC13	protein_coding	Intergenic	.	.	Alu	0.181818
5	10368355	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.272727
5	10368371	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.9
5	10368375	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.8
5	10368423	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.571429
5	10368447	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.181818
5	10368557	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.454545
5	10368563	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.846154
5	10368679	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.428571
5	10368680	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.285714
5	10368719	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.111111
5	10368753	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.2
5	10368782	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.357143
5	10368793	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.538462
5	10368794	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.384615
5	10368795	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.307692
5	10368844	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.125
5	10368849	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.1875
1	10500320	A->G	+	ENSG00000142655	PEX14	protein_coding	Intergenic	.	.	Alu	0.3125
1	10500326	A->G	+	ENSG00000142655	PEX14	protein_coding	Intergenic	.	.	Alu	0.117647
1	10545984	A->G	+	ENSG00000142655	PEX14	protein_coding	Intergenic	.	.	Alu	0.3
19	10615903	A->G	+	ENSG00000129353	SLC44A2	protein_coding	Intergenic	.	.	Alu	0.2
2	10638888	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.166667
2	10638892	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.428571
2	10638934	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.416667
5	10759837	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.153846
5	10759840	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.166667
5	10759982	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.117647
2	10800658	A->G	-	ENSG00000143870	PDIA6	protein_coding	Intergenic	.	.	Alu	0.307692
19	10801660	A->G	+	ENSG00000079805	DNM2	protein_coding	Intergenic	.	.	Alu	0.3
19	10933054	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.166667
19	10933063	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.583333
19	10933092	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.416667
19	10933093	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.166667
19	10933130	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.2
19	10933226	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.2
19	10962743	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.3
19	10963117	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.125
19	10963118	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.24
19	10963123	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.0833333
19	10963191	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.315789
19	10963213	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.1
19	10963293	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.1875
12	11025108	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.166667
12	11025129	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.416667
12	11025182	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.466667
12	11054998	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.210526
7	11068300	A->G	+	ENSG00000106443	PHF14	protein_coding	Intergenic	.	.	Alu	0.133333
12	11084889	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.233333
12	11084898	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.225806
12	11084944	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.105263
12	11084950	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.105263
12	11084966	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.05
12	11084977	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.459459
12	11085001	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.117647
12	11085025	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.192308
12	11085099	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.380952
19	11107997	A->G	+	ENSG00000130164	LDLR	protein_coding	Intergenic	.	.	Alu	0.181818
10	11196810	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.0377358
10	11196839	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.0925926
12	11204697	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
12	11204698	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
12	11204705	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
12	11204720	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
12	11245614	A->G	+	ENSG00000275119	AC244131.2	lincRNA	Intergenic	.	.	Alu	0.727273
12	11245640	A->G	+	ENSG00000275119	AC244131.2	lincRNA	Intergenic	.	.	Alu	0.916667
12	11245670	A->G	+	ENSG00000275119	AC244131.2	lincRNA	Intergenic	.	.	Alu	0.2
8	11302015	A->G	+	ENSG00000104643	MTMR9	protein_coding	Intergenic	.	.	Alu	0.153846
3	11396333	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.166667
3	11442800	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.5
3	11442810	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.333333
19	11450009	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.2
19	11450010	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.4375
19	11450051	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	1
10	11583286	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.125
10	11583320	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.0740741
10	11583326	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	1
10	11583917	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.3
12	11658375	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.7
12	11658377	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.3
12	11660395	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.214286
12	11660409	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.16
12	11660452	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.333333
12	11660468	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.285714
12	11660478	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.315789
12	11660479	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.388889
12	11660484	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.15
12	11660519	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.391304
12	11660520	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.315789
12	11660527	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.307692
12	11660562	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.571429
16	11707545	A->G	-	ENSG00000153066	TXNDC11	protein_coding	Intergenic	.	.	Alu	0.2
16	11707573	A->G	-	ENSG00000153066	TXNDC11	protein_coding	Intergenic	.	.	Alu	0.1875
16	11707586	A->G	-	ENSG00000153066	TXNDC11	protein_coding	Intergenic	.	.	Alu	0.2
16	11709390	A->G	-	ENSG00000153066	TXNDC11	protein_coding	Intergenic	.	.	Alu	0.266667
12	11716106	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0535714
12	11716210	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.03125
12	11733287	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0408163
12	11733349	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0625
12	11733365	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0571429
12	11734392	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.2
12	11734397	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.185185
12	11734431	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.08
12	11734457	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.08
12	11734460	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.12
12	11735860	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.230769
12	11784328	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.235294
12	11808902	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0882353
12	11808930	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0833333
12	11808993	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.137931
12	11809034	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0588235
12	11818408	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0869565
12	11818470	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0869565
3	11823799	A->G	-	ENSG00000144559	TAMM41	protein_coding	Intergenic	.	.	Alu	0.153846
8	11825317	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.230769
8	11825355	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.416667
8	11825383	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.125
8	11825419	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.117647
8	11825523	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.272727
12	11845731	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.2
12	11845751	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.166667
12	11845790	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.153846
19	11865799	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.75
19	11865880	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.333333
19	11865906	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.346154
19	11865907	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.333333
19	11865916	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.333333
19	11865933	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.351351
19	11865935	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.0540541
16	11889056	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.4
16	11889063	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.3
16	11889074	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.181818
19	11891175	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.214286
19	11891176	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.933333
19	11896099	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.7
19	11896134	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.166667
19	11896137	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.3
16	11911478	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.0952381
16	11911483	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.08
16	11911501	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.2
16	11911514	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.0833333
16	11911524	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.0952381
16	11911681	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.2
10	11952613	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.2
19	11991880	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.2
19	11991990	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.117647
19	11992048	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.0869565
19	12004308	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.0857143
19	12004331	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.0487805
19	12010882	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.5
19	12010942	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.727273
19	12019182	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.181818
10	12019918	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.3
10	12019919	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.2
10	12019920	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.2
10	12019921	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.3
10	12019928	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.181818
19	12036373	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.181818
19	12036414	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.8
19	12041847	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.25
19	12041853	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.2
10	12134901	A->G	+	ENSG00000065665	SEC61A2	protein_coding	Intergenic	.	.	Alu	0.133333
19	12289903	A->G	-	ENSG00000197857	ZNF44	protein_coding	Intergenic	.	.	Alu	0.363636
10	12356611	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.142857
10	12372840	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.111111
10	12373394	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.176471
10	12373398	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.117647
10	12374035	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.111111
10	12374175	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.153846
10	12374992	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.142857
12	12438273	A->G	+	ENSG00000165714	BORCS5	protein_coding	Intergenic	.	.	Alu	0.272727
10	12456647	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.166667
19	12523260	A->G	-	ENSG00000196826	AC008758.1	protein_coding	Intergenic	.	.	Alu	0.181818
10	12578692	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.454545
3	12654205	A->G	-	ENSG00000132155	RAF1	protein_coding	Intergenic	.	.	Alu	0.307692
3	12654207	A->G	-	ENSG00000132155	RAF1	protein_coding	Intergenic	.	.	Alu	0.384615
3	12654215	A->G	-	ENSG00000132155	RAF1	protein_coding	Intergenic	.	.	Alu	0.142857
19	12660887	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.117647
19	12660896	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.428571
10	12717765	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.166667
10	12717773	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.153846
10	12717833	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.25
18	12720910	A->G	+	ENSG00000128789	PSMG2	protein_coding	Intergenic	.	.	Alu	0.230769
18	12721000	A->G	+	ENSG00000128789	PSMG2	protein_coding	Intergenic	.	.	Alu	0.25
18	12721017	A->G	+	ENSG00000128789	PSMG2	protein_coding	Intergenic	.	.	Alu	0.133333
19	12746961	A->G	+	ENSG00000198356	ASNA1	protein_coding	Intergenic	.	.	Alu	0.2
19	12746962	A->G	+	ENSG00000198356	ASNA1	protein_coding	Intergenic	.	.	Alu	0.3
19	12746965	A->G	+	ENSG00000198356	ASNA1	protein_coding	Intergenic	.	.	Alu	0.272727
18	12850311	A->G	-	ENSG00000175354	PTPN2	protein_coding	Intergenic	.	.	Alu	0.181818
18	12850351	A->G	-	ENSG00000175354	PTPN2	protein_coding	Intergenic	.	.	Alu	0.2
18	12850367	A->G	-	ENSG00000175354	PTPN2	protein_coding	Intergenic	.	.	Alu	0.214286
19	12911246	A->G	-	ENSG00000105607	GCDH	protein_coding	Intergenic	.	.	Alu	0.2
19	12921627	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
19	12921637	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
18	12967700	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.25
18	12967704	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.285714
18	12967732	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.181818
18	12967767	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.1875
18	12967803	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.0869565
18	12967807	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.0833333
18	12967820	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.227273
18	12967864	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.08
18	12971447	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.181818
18	13321627	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.2
18	13321741	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.3
18	13459120	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.25
18	13459133	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.166667
18	13459138	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.25
18	13459487	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.363636
6	13648212	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.111111
6	13648226	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0689655
6	13648246	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.103448
6	13648286	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.34375
6	13648296	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0714286
6	13648308	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.12
6	13648312	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.166667
6	13648349	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.1875
6	13648351	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0967742
11	13672341	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0769231
11	13672416	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0666667
11	13672491	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0377358
6	13686422	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.166667
6	13689387	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.2
11	13703789	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.230769
11	13703867	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0606061
11	13703868	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0588235
11	13703891	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0625
11	13703892	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0909091
11	13703893	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0645161
11	13703897	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.103448
11	13703915	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.341463
11	13703924	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	1
11	13703950	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.05
11	13703964	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0425532
11	13703965	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0487805
11	13703994	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.09375
11	13703999	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	13755817	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.15
1	13755823	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.111111
1	13755996	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.820513
1	13755997	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.625
1	13756002	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.0731707
1	13758265	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.0714286
19	13837702	A->G	-	.	.	.	Intergenic	.	.	Alu	0.136364
19	13837703	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
19	13837721	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0833333
19	13838166	A->G	-	.	.	.	Intergenic	.	.	Alu	0.461538
19	13838188	A->G	-	.	.	.	Intergenic	.	.	Alu	0.461538
16	14596684	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.818182
16	14596931	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.3
16	14596951	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.166667
16	14599105	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.307692
16	14599131	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.363636
16	14599132	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.181818
3	14673233	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
19	14741194	A->G	-	ENSG00000127507	ADGRE2	protein_coding	Intergenic	.	.	Alu	0.4
11	14890685	A->G	-	ENSG00000186104	CYP2R1	protein_coding	Intergenic	.	.	Alu	0.2
21	14973958	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.125
3	14981509	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.4
16	14983317	A->G	+	ENSG00000179889	PDXDC1	protein_coding	Intergenic	.	.	Alu	0.2
16	14983318	A->G	+	ENSG00000179889	PDXDC1	protein_coding	Intergenic	.	.	Alu	0.363636
21	15012550	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0416667
21	15012551	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0425532
21	15012591	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0344828
16	15012635	A->G	+	ENSG00000179889	PDXDC1	protein_coding	Intergenic	.	.	Alu	0.153846
16	15012917	A->G	+	ENSG00000179889	PDXDC1	protein_coding	Intergenic	.	.	Alu	0.25
3	15018271	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.384615
3	15018280	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.133333
3	15018606	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.1875
3	15018617	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.117647
3	15018662	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.153846
3	15018686	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.133333
3	15018807	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.5
3	15018838	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.117647
3	15018854	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.117647
3	15018868	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.222222
3	15018881	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.5
3	15018895	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.363636
3	15019210	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.176471
3	15029712	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	15075711	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
10	15075717	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
3	15248764	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.25
3	15248799	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.6
3	15248841	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.133333
3	15248911	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.352941
3	15248916	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.538462
6	15254801	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.333333
6	15254915	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.117647
6	15254921	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	15254922	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.217391
6	15254931	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.208333
6	15270820	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.272727
6	15270821	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.363636
6	15270873	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.363636
6	15277992	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.125
6	15277993	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.117647
6	15298559	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.666667
19	15339334	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
19	15339809	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
19	15340085	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
6	15343108	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.148148
6	15343109	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.185185
6	15343135	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.117647
6	15343181	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	15343199	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.0740741
19	15345663	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
19	15345748	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
19	15357830	A->G	-	ENSG00000105127	AKAP8	protein_coding	Intergenic	.	.	Alu	0.235294
19	15357898	A->G	-	ENSG00000105127	AKAP8	protein_coding	Intergenic	.	.	Alu	0.2
19	15357900	A->G	-	ENSG00000105127	AKAP8	protein_coding	Intergenic	.	.	Alu	0.363636
19	15462794	A->G	-	ENSG00000105122	RASAL3	protein_coding	Intergenic	.	.	Alu	0.692308
9	15497415	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.25
9	15497423	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.0952381
9	15497438	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.0833333
9	15497443	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.0869565
9	15497464	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.0869565
9	15497506	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.181818
6	15515876	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.125
6	15515896	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.153846
17	15523475	A->G	-	ENSG00000175106	TVP23C	protein_coding	Intergenic	.	.	Alu	0.272727
17	15523481	A->G	-	ENSG00000175106	TVP23C	protein_coding	Intergenic	.	.	Alu	0.181818
3	15567287	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.142857
3	15567306	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.384615
3	15567487	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.416667
3	15567492	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.25
3	15567493	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.153846
3	15594173	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.3
4	15634504	A->G	-	ENSG00000118564	FBXL5	protein_coding	Intergenic	.	.	Alu	0.181818
1	15688397	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.2
1	15688487	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.181818
1	15688531	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.142857
1	15688994	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.153846
1	15689029	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.142857
1	15689226	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.176471
1	15689227	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.285714
1	15691903	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.181818
1	15691990	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.272727
1	15692019	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.4
1	15692028	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.210526
1	15692038	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.157895
1	15692041	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.111111
16	15700980	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.3
16	15705726	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.3
16	15705727	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.363636
16	15705815	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.266667
16	15705834	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.1875
16	15705860	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.133333
16	15705910	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.307692
16	15705913	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.142857
1	15710052	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.166667
1	15710064	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.181818
12	15901699	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.136364
12	15901714	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.0909091
12	15901845	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.533333
16	15952766	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.166667
16	15952775	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.125
16	15952820	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.269231
16	15952839	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.409091
16	15952929	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.103448
16	15952932	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.296296
16	15953067	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
16	15953146	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.166667
16	15953274	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
16	15953288	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.526316
16	15982695	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.3
16	15982725	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
16	15982731	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
16	15982747	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.142857
16	15982763	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.142857
16	15989011	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.153846
16	15999484	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.333333
16	15999492	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.4
16	15999494	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
17	16021273	A->G	+	ENSG00000011295	TTC19	protein_coding	Intergenic	.	.	Alu	0.0833333
17	16021284	A->G	+	ENSG00000011295	TTC19	protein_coding	Intergenic	.	.	Alu	0.136364
17	16049863	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.272727
17	16050290	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.153846
17	16050360	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.142857
17	16050907	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.117647
17	16050961	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.125
16	16053371	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.3
16	16053636	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.230769
16	16053666	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
17	16056450	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.04
17	16056476	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.0344828
16	16057255	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.125
19	16080691	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.636364
19	16080692	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.636364
19	16080705	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.166667
19	16080741	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.454545
16	16089427	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.125
16	16089543	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.117647
16	16096081	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.153846
16	16096083	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.285714
16	16096089	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
19	16098368	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.133333
17	16107098	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.153846
17	16107100	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.142857
17	16107161	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.2
17	16107167	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.166667
17	16107184	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.2
17	16133054	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.2
19	16150751	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.2
16	16154227	A->G	+	ENSG00000091262	ABCC6	protein_coding	Intergenic	.	.	Alu	0.2
19	16156144	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.133333
19	16156172	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.153846
19	16156175	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.153846
19	16156176	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.363636
19	16156231	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.166667
19	16156235	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.181818
19	16156386	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.166667
19	16156397	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.176471
19	16156420	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.1875
19	16156436	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.142857
19	16156464	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.384615
19	16156733	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.2
19	16156787	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.272727
19	16156812	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.125
19	16156981	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.142857
17	16208108	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.133333
1	16240488	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
1	16240504	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
1	16241001	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	16256260	A->G	+	ENSG00000137198	GMPR	protein_coding	Intergenic	.	.	Alu	0.3
6	16256261	A->G	+	ENSG00000137198	GMPR	protein_coding	Intergenic	.	.	Alu	0.333333
6	16256462	A->G	+	ENSG00000137198	GMPR	protein_coding	Intergenic	.	.	Alu	0.4
17	16383008	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
2	16419406	A->G	-	ENSG00000224400	AC010880.1	lincRNA	Intergenic	.	.	Alu	0.454545
19	16637422	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.272727
19	16637423	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.2
19	16637429	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.363636
19	16638047	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.272727
19	16638143	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.2
19	16638145	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.666667
19	16638185	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.8
19	16638215	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.939394
19	16638220	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.242424
19	16638229	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.0645161
19	16638369	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.290323
19	16638371	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638389	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638406	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.0909091
19	16638432	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.323529
19	16638440	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.16
19	16638441	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.115385
19	16638460	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.214286
19	16638473	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.375
19	16638474	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.111111
19	16638477	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.625
19	16638535	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.133333
19	16638568	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.157895
19	16640280	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.153846
19	16644575	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.181818
7	16667162	A->G	+	ENSG00000136261	BZW2	protein_coding	Intergenic	.	.	Alu	0.5
11	16740482	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.428571
11	16740489	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.459459
11	16740502	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.428571
11	16740521	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.226415
11	16740560	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0517241
11	16740562	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.157895
11	16740573	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0877193
11	16740578	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.535714
11	16740587	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.172414
11	16740602	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0363636
11	16740605	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0425532
11	16740696	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.466667
11	16740838	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0666667
11	16740839	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.125
11	16740844	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.235294
11	16740936	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0666667
11	16740942	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.1
11	16740943	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.181818
11	16740944	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0625
11	16740949	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.181818
11	16740950	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.1
11	16740962	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.411765
11	16756436	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.266667
11	16756451	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.461538
11	16756647	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.5
1	17030885	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.181818
1	17049430	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.142857
1	17049491	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.133333
1	17049493	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.133333
1	17049757	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.3
1	17049835	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.533333
1	17049840	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.142857
1	17049848	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.214286
1	17049849	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.125
1	17049850	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.125
1	17049865	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.166667
1	17049866	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.230769
1	17049927	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.5
19	17081632	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.181818
19	17081662	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.166667
19	17081672	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17081729	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.103448
19	17081730	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.0769231
19	17081734	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.225806
19	17081798	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.166667
19	17084784	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.125
19	17084785	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3125
19	17084812	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.166667
19	17097270	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.142857
19	17097271	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.214286
19	17097276	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.153846
19	17097278	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.5
19	17099898	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.125
19	17100438	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.230769
19	17102800	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17103038	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.0625
19	17105253	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.181818
19	17105384	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.363636
11	17131494	A->G	-	ENSG00000011405	PIK3C2A	protein_coding	Intergenic	.	.	Alu	0.153846
11	17131519	A->G	-	ENSG00000011405	PIK3C2A	protein_coding	Intergenic	.	.	Alu	0.3
19	17178403	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3
11	17285672	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17297829	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.375
11	17297855	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.125
11	17297896	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17297906	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	17298002	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0909091
11	17298003	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.136364
11	17298047	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.1
11	17298328	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.266667
11	17298360	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.230769
11	17298375	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.272727
11	17298402	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.307692
11	17298418	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.142857
11	17298447	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.130435
11	17298461	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.347826
11	17298464	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	17298465	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.458333
11	17298493	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.181818
11	17298509	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.323529
11	17298520	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0857143
11	17298523	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.176471
11	17336500	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17336674	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.333333
11	17336675	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.3125
11	17337113	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	17337126	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.3
10	17448688	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	0.2
10	17448754	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	0.15
3	17464057	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.111111
3	17464080	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.133333
3	17464084	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.266667
3	17464089	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.166667
3	17464144	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.4
3	17464158	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.153846
3	17472340	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.2
21	17599319	A->G	-	ENSG00000154640	BTG3	protein_coding	Intergenic	.	.	Alu	0.105263
6	17645324	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.153846
6	17645370	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.166667
6	17645372	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.25
6	17645386	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.266667
6	17645408	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.176471
6	17645432	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.25
10	17687201	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.3
10	17687219	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.8
10	17687220	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.7
10	17687228	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.181818
10	17687354	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.2
10	17687360	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.181818
10	17687378	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.8
10	17687471	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.142857
4	17990371	A->G	-	ENSG00000178177	LCORL	protein_coding	Intergenic	.	.	Alu	0.2
4	17990372	A->G	-	ENSG00000178177	LCORL	protein_coding	Intergenic	.	.	Alu	0.2
8	17997838	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.105263
8	17997839	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.111111
8	18000761	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.230769
6	18237964	A->G	-	ENSG00000124795	DEK	protein_coding	Intergenic	.	.	Alu	0.117647
17	18271812	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.2
17	18271818	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.4
17	18272753	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.4
17	18272760	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.230769
17	18273851	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.307692
17	18273884	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.333333
11	18406095	A->G	+	ENSG00000256006	AC084117.1	sense_intronic	Intergenic	.	.	Alu	0.272727
11	18406515	A->G	+	ENSG00000256006	AC084117.1	sense_intronic	Intergenic	.	.	Alu	0.0952381
11	18512305	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.6
11	18512788	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.2
11	18512868	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.142857
11	18512905	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.111111
11	18512907	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.117647
11	18512910	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.176471
11	18512929	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.157895
11	18513007	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.333333
11	18520776	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.133333
11	18520782	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	1
11	18521429	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0810811
11	18521431	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.170732
11	18521466	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.117647
11	18521471	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.171429
11	18521536	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.05
11	18521644	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0588235
11	18521774	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.36
11	18521874	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.166667
11	18521897	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.15
11	18521901	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.157895
11	18521920	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.166667
11	18521944	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.285714
20	18616660	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.166667
20	18616732	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.1875
10	18652653	A->G	-	ENSG00000241058	NSUN6	protein_coding	Intergenic	.	.	Alu	0.230769
10	18652787	A->G	-	ENSG00000241058	NSUN6	protein_coding	Intergenic	.	.	Alu	0.133333
20	18660067	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.8125
20	18660085	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.142857
20	18660091	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.307692
20	18660410	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.636364
20	18660481	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.181818
20	18660482	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.272727
20	18660483	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.166667
20	18660495	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.266667
19	18693979	A->G	+	ENSG00000105662	CRTC1	protein_coding	Intergenic	.	.	Alu	0.3
16	18887477	A->G	-	ENSG00000157106	SMG1	protein_coding	Intergenic	.	.	Alu	0.142857
19	18909579	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.102564
19	18909595	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.127273
19	18909604	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0327869
19	18909615	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.106383
19	18909616	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.129032
19	18909630	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.12963
19	18909640	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0701754
19	18909704	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0666667
19	18909714	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0769231
19	18909729	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0645161
19	18909750	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0714286
19	18909777	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0833333
19	18909786	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.190476
19	18911988	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.2
19	18912225	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.181818
19	18917536	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.2
19	18917543	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.2
22	19082292	A->G	-	ENSG00000070413	DGCR2	protein_coding	Intergenic	.	.	Alu	0.4
9	19115480	A->G	-	ENSG00000147872	PLIN2	protein_coding	Intergenic	.	.	Alu	0.2
1	19214870	A->G	+	ENSG00000230424	AL035413.1	antisense	Intergenic	.	.	Alu	0.181818
1	19214874	A->G	+	ENSG00000230424	AL035413.1	antisense	Intergenic	.	.	Alu	0.166667
1	19215256	A->G	+	ENSG00000230424	AL035413.1	antisense	Intergenic	.	.	Alu	0.166667
1	19215284	A->G	+	ENSG00000230424	AL035413.1	antisense	Intergenic	.	.	Alu	0.384615
1	19301926	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
9	19306881	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.25
9	19306885	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.142857
9	19307136	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.857143
9	19307169	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.529412
9	19307191	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.111111
9	19307212	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.2
9	19307244	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.0869565
9	19307245	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.0833333
9	19307248	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.291667
9	19307274	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.0909091
9	19307284	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.15
9	19307288	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.263158
9	19307310	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.235294
1	19316987	A->G	-	ENSG00000040487	PQLC2	protein_coding	Intergenic	.	.	Alu	0.142857
1	19316988	A->G	-	ENSG00000040487	PQLC2	protein_coding	Intergenic	.	.	Alu	0.133333
9	19323231	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.153846
19	19329776	A->G	+	ENSG00000129933	MAU2	protein_coding	Intergenic	.	.	Alu	0.166667
1	19364879	A->G	-	ENSG00000077549	CAPZB	protein_coding	Intergenic	.	.	Alu	0.181818
12	19446461	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.6
12	19446617	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.117647
12	19450721	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.266667
12	19450744	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.153846
12	19450752	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.1875
22	19487145	A->G	+	ENSG00000093009	CDC45	protein_coding	Intergenic	.	.	Alu	0.181818
22	19487177	A->G	+	ENSG00000093009	CDC45	protein_coding	Intergenic	.	.	Alu	0.181818
1	19601324	A->G	+	ENSG00000173436	MINOS1	protein_coding	Intergenic	.	.	Alu	0.153846
1	19601364	A->G	+	ENSG00000173436	MINOS1	protein_coding	Intergenic	.	.	Alu	0.153846
X	19621200	A->G	-	ENSG00000147010	SH3KBP1	protein_coding	Intergenic	.	.	Alu	0.2
13	19714592	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.0606061
13	19714635	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.0689655
13	19714691	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.263158
10	19739663	A->G	+	ENSG00000204740	MALRD1	protein_coding	Intergenic	.	.	Alu	0.2
13	19744747	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.125
13	19744797	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.111111
10	19820891	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.08
10	19820958	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.214286
13	19847710	A->G	-	ENSG00000132950	ZMYM5	protein_coding	Intergenic	.	.	Alu	0.0869565
10	19852141	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.214286
10	19852143	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.294118
10	19852149	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.105263
10	19852150	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.15
10	19852177	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.25
10	19852184	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.125
10	19852345	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.111111
10	19852346	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.1
10	19876495	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.2
10	19876541	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.4
10	19927491	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.2
10	19927604	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.181818
10	19927608	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.2
10	19930816	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.5
10	19930884	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.5
10	19930885	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.3
10	19930909	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.142857
3	19952093	A->G	+	ENSG00000144566	RAB5A	protein_coding	Intergenic	.	.	Alu	0.210526
13	19976084	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.111111
13	19985236	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.125
13	19985241	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.230769
13	19985582	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.115385
13	19985755	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.16129
13	19985927	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.142857
13	19985957	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.25
13	19986035	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0869565
13	19986142	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0909091
13	19986856	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0408163
13	19986874	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.121951
13	19986893	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0512821
13	19986926	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0416667
13	19986927	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0833333
13	19986947	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0408163
13	19986950	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0392157
13	19987046	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.266667
13	19987050	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.277778
13	19987328	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.266667
13	19987393	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.16
13	19987403	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.190476
13	19987510	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0555556
13	19987537	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0740741
13	19987749	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.294118
13	19994876	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.181818
13	19995081	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.153846
13	20001271	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.181818
13	20001272	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.25
3	20044226	A->G	+	ENSG00000114166	KAT2B	protein_coding	Intergenic	.	.	Alu	0.181818
13	20079225	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.2
X	20131562	A->G	-	ENSG00000173674	EIF1AX	protein_coding	Intergenic	.	.	Alu	0.153846
X	20131784	A->G	-	ENSG00000173674	EIF1AX	protein_coding	Intergenic	.	.	Alu	0.166667
19	20227215	A->G	-	ENSG00000267383	AC011447.3	antisense	Intergenic	.	.	Alu	0.25
19	20227241	A->G	-	ENSG00000267383	AC011447.3	antisense	Intergenic	.	.	Alu	0.214286
19	20227268	A->G	-	ENSG00000267383	AC011447.3	antisense	Intergenic	.	.	Alu	0.166667
10	20247423	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.3125
X	20248639	A->G	-	ENSG00000177189	RPS6KA3	protein_coding	Intergenic	.	.	Alu	0.153846
2	20292564	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.166667
2	20292578	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.181818
2	20292582	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.2
2	20292589	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.8
2	20345135	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.217391
2	20345192	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.5
22	20527519	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.4
22	20527571	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.416667
22	20527748	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.125
22	20527807	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.153846
22	20527810	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.142857
22	20527877	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.2
22	20545358	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.166667
22	20545385	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.153846
6	20551938	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.333333
6	20551981	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.619048
6	20552003	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.105263
6	20552083	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.555556
6	20552084	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.473684
6	20552147	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.157895
6	20552149	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.105263
6	20552191	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.1
6	20552228	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.142857
6	20552258	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.0666667
6	20552269	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.26087
6	20552275	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.25
6	20552277	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.181818
6	20552327	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.166667
1	20647279	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.153846
1	20647303	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.214286
1	20647556	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.3
1	20647595	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.266667
1	20647945	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.166667
1	20658898	A->G	-	ENSG00000244038	DDOST	protein_coding	Intergenic	.	.	Alu	0.181818
16	20685580	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.105263
16	20697939	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.230769
16	20697940	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.717949
16	20697983	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.294118
16	20698139	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0740741
16	20698565	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.375
16	20698570	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0789474
16	20698583	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0588235
16	20698709	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.909091
16	20698761	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.615385
16	20698771	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.375
16	20698783	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0606061
16	20705252	A->G	+	ENSG00000005187	ACSM3	protein_coding	Intergenic	.	.	Alu	0.333333
16	20705258	A->G	+	ENSG00000005187	ACSM3	protein_coding	Intergenic	.	.	Alu	0.25
16	20739566	A->G	+	ENSG00000005187	ACSM3	protein_coding	Intergenic	.	.	Alu	0.2
1	20750938	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.153846
1	20750946	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.307692
1	20751011	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.428571
1	20751012	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.230769
1	20751092	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.153846
1	20751106	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.307692
22	20753783	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.111111
22	20756272	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.3
22	20756358	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.117647
1	20758547	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.3
1	20760077	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.235294
1	20760115	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.35
1	20760121	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.111111
13	20811531	A->G	-	ENSG00000132953	XPO4	protein_coding	Intergenic	.	.	Alu	0.3
13	20811534	A->G	-	ENSG00000132953	XPO4	protein_coding	Intergenic	.	.	Alu	0.545455
1	20913931	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.2
1	20913939	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.181818
13	21003378	A->G	-	ENSG00000150457	LATS2	protein_coding	Intergenic	.	.	Alu	0.166667
18	21027181	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.142857
17	21041049	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.2
6	21113572	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.545455
6	21113607	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.25
6	21114061	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.25
6	21114065	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.357143
6	21114071	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.2
6	21114098	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.2
6	21114189	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.416667
6	21114659	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.2
6	21114696	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.166667
1	21130167	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.130435
1	21130301	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.181818
1	21130321	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.2
1	21150732	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.2
1	21150889	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.333333
1	21150893	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.3
1	21150929	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.133333
1	21151367	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.285714
1	21151371	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.307692
1	21151377	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.25
1	21151510	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.384615
1	21157587	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.166667
1	21157615	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.25
1	21158236	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.315789
1	21158273	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.214286
1	21158297	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.235294
1	21158300	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	1
1	21158304	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.1875
19	21315958	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.25
19	21316199	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.391304
19	21316201	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.0869565
19	21316206	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.12
19	21316216	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.0769231
19	21316257	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.16
19	21316262	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.545455
19	21316263	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.318182
19	21316323	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.105263
19	21316330	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.136364
19	21316333	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.0909091
19	21316344	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.08
19	21316377	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.148148
19	21316398	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.238095
19	21405965	A->G	+	ENSG00000196268	ZNF493	protein_coding	Intergenic	.	.	Alu	0.05
19	21405992	A->G	+	ENSG00000196268	ZNF493	protein_coding	Intergenic	.	.	Alu	0.0487805
19	21406057	A->G	+	ENSG00000196268	ZNF493	protein_coding	Intergenic	.	.	Alu	0.105263
19	21406075	A->G	+	ENSG00000196268	ZNF493	protein_coding	Intergenic	.	.	Alu	0.105263
13	21414391	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.153846
16	21424646	A->G	-	ENSG00000169246	NPIPB3	protein_coding	Intergenic	.	.	Alu	0.285714
16	21424655	A->G	-	ENSG00000169246	NPIPB3	protein_coding	Intergenic	.	.	Alu	0.380952
13	21426880	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.181818
13	21426881	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.166667
13	21432748	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.25
13	21433234	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.333333
13	21441458	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0666667
13	21441459	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.4
13	21441518	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0645161
13	21442630	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.384615
13	21442643	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.615385
13	21442698	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.210526
19	21445700	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.111111
19	21445738	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.1875
19	21445760	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.117647
19	21445765	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.1875
14	21446476	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.416667
14	21446504	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.2
14	21447474	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.181818
14	21447475	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.272727
14	21447486	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.181818
19	21451659	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.307692
19	21451676	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.272727
19	21451694	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.181818
19	21451764	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.666667
19	21451769	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.266667
19	21451770	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.153846
19	21451778	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.214286
19	21460315	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.166667
19	21460456	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.181818
14	21470154	A->G	-	ENSG00000129472	RAB2B	protein_coding	Intergenic	.	.	Alu	0.0909091
13	21498503	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.133333
13	21498517	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.142857
13	21498543	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.214286
16	21518151	A->G	-	ENSG00000180747	SMG1P3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
13	21537634	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.3
19	21538489	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.384615
19	21538496	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.230769
19	21538502	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.571429
19	21538506	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.142857
19	21538538	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.2
13	21548994	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.3
13	21548998	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.166667
13	21549064	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.363636
13	21559636	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.0909091
13	21559649	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.6
13	21559685	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.111111
13	21559689	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.133333
13	21559692	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.222222
13	21559728	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.181818
13	21559729	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.272727
13	21559797	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.538462
13	21559798	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.133333
13	21559816	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.181818
13	21563398	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.2
13	21563881	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.166667
22	21572234	A->G	+	ENSG00000185651	UBE2L3	protein_coding	Intergenic	.	.	Alu	0.2
10	21593807	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.272727
10	21594429	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.181818
10	21660103	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.6
10	21660672	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.333333
10	21660673	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.5
10	21660687	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.125
10	21660688	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.133333
10	21660722	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.2
10	21660753	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.2
10	21660754	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	1
1	21685440	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.538462
1	21685475	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.733333
1	21685503	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.384615
1	21685516	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.307692
1	21685871	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.727273
1	21685872	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.727273
22	21724425	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.4
22	21724450	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.333333
22	21724454	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.272727
22	21724455	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.3
22	21724475	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.333333
22	21724478	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.3
22	21724480	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.545455
22	21724515	A->G	-	ENSG00000100027	YPEL1	protein_coding	Intergenic	.	.	Alu	0.727273
19	21820912	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.105263
19	21821033	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.181818
19	21821034	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.583333
19	21823633	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.0952381
22	21834055	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.166667
19	21835558	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.142857
19	21835560	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.142857
16	21860737	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.181818
16	21860738	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.166667
16	21860743	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.142857
16	21860779	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.26087
16	21860784	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.0769231
16	21860814	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.166667
16	21860815	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.176471
16	21860821	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.176471
16	21860823	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.125
16	21860948	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.285714
16	21860949	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.153846
16	21861825	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.363636
16	21864278	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.117647
16	21864322	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.111111
10	21908984	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.363636
10	21909015	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.117647
10	21909024	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.384615
10	21909051	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.214286
10	21957060	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.0909091
10	21966823	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.0224719
10	21968649	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.615385
10	21985335	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.105263
10	21985414	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.181818
6	22002991	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.153846
6	22003018	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.181818
1	22062610	A->G	+	ENSG00000230068	CDC42-IT1	sense_intronic	Intergenic	.	.	Alu	0.0769231
1	22073282	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0869565
1	22073317	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.15
1	22073341	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0625
1	22073360	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0882353
1	22073392	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0882353
1	22073418	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.194444
1	22073419	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.432432
1	22073424	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0526316
1	22073428	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0526316
6	22076803	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.4
1	22076963	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.3
1	22076965	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.166667
6	22081434	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.2
6	22081469	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.416667
6	22081471	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.153846
16	22395787	A->G	-	ENSG00000230872	MFSD13B	unitary_pseudogene	Intergenic	.	.	Alu	0.384615
16	22395851	A->G	-	ENSG00000230872	MFSD13B	unitary_pseudogene	Intergenic	.	.	Alu	0.3
16	22411827	A->G	-	ENSG00000140743	CDR2	protein_coding	Intergenic	.	.	Alu	0.181818
16	22412175	A->G	-	ENSG00000140743	CDR2	protein_coding	Intergenic	.	.	Alu	0.2
16	22412178	A->G	-	ENSG00000140743	CDR2	protein_coding	Intergenic	.	.	Alu	0.454545
16	22413815	A->G	-	ENSG00000140743	CDR2	protein_coding	Intergenic	.	.	Alu	0.2
8	22443401	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.142857
8	22449229	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.384615
8	22449364	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.181818
8	22449396	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.142857
8	22449409	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.230769
8	22530684	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.166667
8	22617076	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.368421
8	22617084	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.285714
8	22617093	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.956522
8	22617094	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.409091
10	22661386	A->G	-	ENSG00000150867	PIP4K2A	protein_coding	Intergenic	.	.	Alu	0.181818
10	22661387	A->G	-	ENSG00000150867	PIP4K2A	protein_coding	Intergenic	.	.	Alu	0.166667
10	22661392	A->G	-	ENSG00000150867	PIP4K2A	protein_coding	Intergenic	.	.	Alu	0.230769
14	22908113	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.6
14	22908136	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.142857
14	22908137	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.214286
14	22916154	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.214286
14	22916164	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.25
14	22916178	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.181818
14	22916311	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.2
14	22916354	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.444444
14	22916377	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.166667
14	22916408	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.272727
1	23037086	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.5
1	23037091	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.230769
1	23037093	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	23037219	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	1
1	23037245	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.111111
14	23082505	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.103448
14	23082582	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.2
14	23082583	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.133333
14	23082589	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.214286
14	23082638	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.176471
14	23082687	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.214286
14	23082712	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.133333
14	23082854	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.2
14	23082878	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.130435
14	23082904	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.125
14	23082938	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.0952381
14	23082948	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.25
14	23082956	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.45
14	23082957	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.105263
14	23083006	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.1875
19	23106082	A->G	+	ENSG00000183850	ZNF730	protein_coding	Intergenic	.	.	Alu	0.142857
19	23106563	A->G	+	ENSG00000183850	ZNF730	protein_coding	Intergenic	.	.	Alu	0.181818
1	23119370	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.25
1	23130587	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	23142915	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.307692
1	23142952	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	23152698	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.2
1	23152699	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.2
1	23152709	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	23152734	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.117647
1	23152758	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.294118
1	23152798	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.272727
1	23154349	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.5
1	23154367	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0571429
1	23154417	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.163636
1	23154440	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0961538
1	23154445	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0350877
1	23154457	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0634921
1	23154458	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0967742
1	23154464	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	1
1	23154490	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0444444
1	23154505	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.424242
1	23154525	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	1
1	23154783	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.257143
1	23154788	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0909091
7	23183349	A->G	+	ENSG00000136243	NUPL2	protein_coding	Intergenic	.	.	Alu	0.166667
22	23199054	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.153846
22	23199066	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.133333
22	23200009	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.272727
22	23210230	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.2
3	23242910	A->G	+	ENSG00000182247	UBE2E2	protein_coding	Intergenic	.	.	Alu	0.272727
3	23242921	A->G	+	ENSG00000182247	UBE2E2	protein_coding	Intergenic	.	.	Alu	0.2
3	23242939	A->G	+	ENSG00000182247	UBE2E2	protein_coding	Intergenic	.	.	Alu	0.4
1	23333999	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.2
1	23334003	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.153846
1	23334012	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.333333
1	23334024	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.222222
1	23334102	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.0833333
1	23334164	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.111111
1	23334165	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.1
1	23334193	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.1
13	23370003	A->G	-	ENSG00000151835	SACS	protein_coding	Intergenic	.	.	Alu	0.272727
7	23513383	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.272727
7	23515368	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0344828
7	23515394	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0512821
7	23515613	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0666667
7	23515706	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.368421
7	23515762	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.5
7	23515764	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.1875
7	23515825	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.333333
7	23515827	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.533333
7	23515916	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0869565
7	23515918	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.681818
7	23515930	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.117647
7	23515931	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.111111
7	23515970	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.133333
7	23515972	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.4375
7	23516006	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.142857
7	23516023	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.238095
7	23516024	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.26087
7	23516032	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.166667
7	23518866	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.111111
7	23518891	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.181818
7	23518963	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.166667
7	23520785	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0444444
7	23520869	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0769231
7	23520948	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0666667
22	23578022	A->G	-	ENSG00000128322	IGLL1	protein_coding	Intergenic	.	.	Alu	0.3
22	23578024	A->G	-	ENSG00000128322	IGLL1	protein_coding	Intergenic	.	.	Alu	0.181818
22	23578155	A->G	-	ENSG00000128322	IGLL1	protein_coding	Intergenic	.	.	Alu	0.5
7	23612232	A->G	+	ENSG00000169193	CCDC126	protein_coding	Intergenic	.	.	Alu	0.181818
22	23656781	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.4
22	23656782	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.3
22	23656909	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.2
22	23657145	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.3
22	23657264	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.333333
2	23701626	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.6
2	23701629	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.7
2	23701630	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.3
2	23701631	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.3
2	23701711	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.615385
2	23701868	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.3
22	23746309	A->G	-	ENSG00000187792	ZNF70	protein_coding	Intergenic	.	.	Alu	0.363636
2	23769781	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.6
2	23769783	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.428571
2	23769801	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.1875
2	23770264	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23770272	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.230769
2	23770294	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.5
2	23779272	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
2	23779273	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.133333
2	23779279	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.222222
2	23779314	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.176471
2	23779447	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.230769
2	23779448	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.230769
2	23781408	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.4
2	23781502	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23781537	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.65
2	23781553	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.136364
2	23781565	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.1
2	23781578	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.130435
2	23781582	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
2	23781603	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0869565
2	23781621	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.1875
2	23781915	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.111111
2	23781951	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.208333
2	23781957	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.5
2	23781982	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0487805
2	23781984	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.05
2	23781990	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0588235
2	23781991	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0606061
2	23781992	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0645161
2	23781993	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0909091
2	23781994	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.15625
2	23782009	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0714286
2	23782044	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.111111
2	23782089	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0555556
2	23782090	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0555556
2	23782096	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.216216
3	23817275	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0444444
3	23817289	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0392157
22	23821938	A->G	+	ENSG00000099956	SMARCB1	protein_coding	Intergenic	.	.	Alu	0.181818
3	23832674	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.181818
3	23832684	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.25
3	23832717	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.2
3	23832776	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.142857
3	23832793	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.2
3	23833741	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	23833763	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0625
3	23833764	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0645161
3	23833790	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0769231
3	23833795	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0869565
3	23833859	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	23833883	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0869565
2	23834259	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
2	23834356	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23834389	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
2	23834408	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.333333
2	23841004	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.148148
2	23845609	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.3
2	23845637	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0625
2	23845672	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.517241
2	23845677	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.318182
2	23845708	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0909091
2	23845744	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.321429
2	23845747	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.103448
2	23845748	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.1
2	23845759	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0869565
2	23845762	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.4
2	23845779	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.357143
3	23848282	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.181818
3	23848283	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.181818
3	23848307	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.181818
2	23857874	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.136364
2	23857880	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.136364
2	23857910	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.133333
2	23857948	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23858554	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.133333
2	23858772	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.25
16	23873250	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.117647
2	23900023	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
3	23953249	A->G	+	ENSG00000174738	NR1D2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	23953253	A->G	+	ENSG00000174738	NR1D2	protein_coding	Intergenic	.	.	Alu	0.238095
3	23953254	A->G	+	ENSG00000174738	NR1D2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	23953287	A->G	+	ENSG00000174738	NR1D2	protein_coding	Intergenic	.	.	Alu	0.277778
1	23974021	A->G	-	ENSG00000188529	SRSF10	protein_coding	Intergenic	.	.	Alu	0.25
1	23974022	A->G	-	ENSG00000188529	SRSF10	protein_coding	Intergenic	.	.	Alu	0.230769
1	23974130	A->G	-	ENSG00000188529	SRSF10	protein_coding	Intergenic	.	.	Alu	0.181818
2	23981191	A->G	+	ENSG00000173960	UBXN2A	protein_coding	Intergenic	.	.	Alu	0.230769
2	23981285	A->G	+	ENSG00000173960	UBXN2A	protein_coding	Intergenic	.	.	Alu	0.153846
2	23981379	A->G	+	ENSG00000173960	UBXN2A	protein_coding	Intergenic	.	.	Alu	0.133333
19	24055396	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.636364
19	24055418	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.153846
19	24055420	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.133333
19	24061843	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.125
19	24061882	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.25
19	24061883	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.25
19	24069662	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.230769
19	24069689	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.125
19	24080895	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.166667
19	24082392	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.214286
19	24082435	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.105263
19	24082458	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0769231
19	24082459	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0769231
19	24089936	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0833333
19	24089975	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.192308
19	24090001	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.607143
19	24090002	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.75
19	24090061	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.235294
19	24090077	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.230769
19	24090078	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.615385
19	24090091	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.315789
19	24090099	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.235294
2	24090103	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
19	24090110	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.238095
19	24090113	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.181818
2	24090122	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.133333
19	24090124	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0714286
2	24090153	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.133333
19	24090153	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.129032
19	24090163	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.166667
2	24090252	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.166667
2	24090383	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.153846
2	24090437	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.25
2	24090463	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.333333
2	24090469	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.166667
19	24090476	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.142857
19	24090617	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.166667
19	24090642	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.833333
2	24092022	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.133333
2	24092050	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.285714
2	24092103	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.214286
2	24092141	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24092201	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24092206	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.166667
2	24092298	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.181818
2	24092374	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.181818
2	24092391	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.272727
2	24092481	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24092495	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.411765
2	24092507	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.133333
19	24097661	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.125
19	24097702	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.294118
19	24097725	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.428571
X	24162107	A->G	+	ENSG00000005889	ZFX	protein_coding	Intergenic	.	.	Alu	0.2
14	24170152	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
14	24170153	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
14	24170806	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
14	24170956	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
14	24170976	A->G	+	.	.	.	Intergenic	.	.	Alu	0.193548
14	24170977	A->G	+	.	.	.	Intergenic	.	.	Alu	0.266667
14	24170987	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0555556
14	24171017	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0526316
14	24171018	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0357143
14	24171031	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0392157
14	24171039	A->G	+	.	.	.	Intergenic	.	.	Alu	0.75
14	24171040	A->G	+	.	.	.	Intergenic	.	.	Alu	0.245283
14	24171058	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
14	24171078	A->G	+	.	.	.	Intergenic	.	.	Alu	0.508475
14	24171150	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
2	24327431	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.111111
2	24327436	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.333333
2	24327437	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.111111
2	24337622	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.117647
2	24346967	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.230769
2	24346976	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.153846
2	24346993	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.111111
2	24347047	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.166667
2	24347059	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.315789
2	24347092	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.125
2	24347960	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.5
13	24424783	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.7
13	24425045	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.55
13	24425067	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.363636
13	24425135	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.3
13	24425188	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
13	24425189	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.3125
13	24453089	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.272727
13	24453118	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0714286
13	24453159	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
13	24476230	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.214286
13	24476252	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
2	24514167	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.214286
2	24523485	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.142857
2	24523495	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.142857
2	24523678	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.166667
2	24523739	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.117647
2	24523740	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.125
2	24523805	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.142857
4	24531227	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.166667
4	24531461	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.25
4	24531468	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.153846
4	24531530	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.266667
4	24531541	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.230769
22	24573003	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.176471
22	24573021	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.384615
22	24573053	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.2
22	24573083	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.181818
22	24573093	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.214286
22	24573119	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.142857
22	24573124	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.307692
22	24573191	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0909091
22	24573660	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.153846
22	24573661	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.428571
22	24573702	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.166667
22	24573703	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.105263
22	24573722	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.214286
22	24573723	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.285714
22	24574574	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.45
22	24574602	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.193548
22	24574608	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.206897
22	24574641	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.846154
22	24574646	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.142857
22	24574654	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.275862
22	24574671	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.424242
22	24574675	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.46875
22	24574678	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.21875
22	24574681	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0606061
22	24574691	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.09375
22	24574694	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0625
22	24574703	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.172414
22	24574707	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.294118
22	24574708	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0909091
22	24574742	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.166667
22	24574752	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.319149
22	24574764	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0384615
22	24574776	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0967742
22	24574777	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0483871
22	24574817	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0625
1	24747959	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.0952381
1	24755524	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.181818
1	24755551	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.166667
1	24768115	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.285714
1	24768716	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.214286
1	24768731	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.375
1	24769086	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.153846
1	24791970	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.117647
6	25016024	A->G	-	ENSG00000111913	RIPOR2	protein_coding	Intergenic	.	.	Alu	0.176471
6	25017270	A->G	-	ENSG00000111913	RIPOR2	protein_coding	Intergenic	.	.	Alu	0.5
18	25121351	A->G	-	ENSG00000198795	ZNF521	protein_coding	Intergenic	.	.	Alu	0.25
18	25121352	A->G	-	ENSG00000198795	ZNF521	protein_coding	Intergenic	.	.	Alu	0.142857
4	25157750	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.181818
8	25229300	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.272727
12	25230372	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.117647
12	25230437	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.181818
12	25230490	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.25
12	25230496	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.181818
12	25230504	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.272727
12	25231250	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.166667
12	25231266	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.125
12	25231314	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0869565
12	25231324	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.222222
12	25231356	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.133333
8	25254565	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.1
8	25254571	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.166667
8	25254575	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.111111
8	25254588	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.0952381
8	25254590	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.117647
8	25254654	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.25
8	25254655	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.25
13	25282734	A->G	-	ENSG00000139505	MTMR6	protein_coding	Intergenic	.	.	Alu	0.105263
13	25282743	A->G	-	ENSG00000139505	MTMR6	protein_coding	Intergenic	.	.	Alu	0.157895
13	25306373	A->G	+	ENSG00000139496	NUP58	protein_coding	Intergenic	.	.	Alu	0.148148
1	25354431	A->G	+	ENSG00000183726	TMEM50A	protein_coding	Intergenic	.	.	Alu	0.416667
1	25354451	A->G	+	ENSG00000183726	TMEM50A	protein_coding	Intergenic	.	.	Alu	0.181818
1	25354527	A->G	+	ENSG00000183726	TMEM50A	protein_coding	Intergenic	.	.	Alu	0.2
15	25357641	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.133333
15	25358114	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.142857
20	25366338	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.266667
20	25366348	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.153846
20	25366349	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.714286
20	25366538	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.235294
20	25370957	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.153846
15	25431405	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.2
15	25433348	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.2
15	25433467	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.272727
1	25437870	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.181818
1	25438769	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.125
1	25438819	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.0833333
1	25438874	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	25440717	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	25451645	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.391304
1	25451651	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.111111
1	25451697	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.166667
1	25451914	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.166667
1	25453645	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.2
1	25480745	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.181818
1	25480747	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.166667
1	25480753	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.166667
1	25480754	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.166667
1	25480755	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.333333
1	25480811	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.3125
1	25480851	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.307692
1	25480859	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.25
3	25661138	A->G	-	ENSG00000077097	TOP2B	protein_coding	Intergenic	.	.	Alu	0.0204082
3	25760851	A->G	+	ENSG00000151092	NGLY1	protein_coding	Intergenic	.	.	Alu	0.2
21	26004346	A->G	-	ENSG00000142192	APP	protein_coding	Intergenic	.	.	Alu	0.272727
21	26004359	A->G	-	ENSG00000142192	APP	protein_coding	Intergenic	.	.	Alu	0.153846
2	26057290	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.166667
2	26114784	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.2
2	26269029	A->G	+	ENSG00000138029	HADHB	protein_coding	Intergenic	.	.	Alu	0.416667
8	26306290	A->G	+	ENSG00000221914	PPP2R2A	protein_coding	Intergenic	.	.	Alu	0.181818
8	26310268	A->G	+	ENSG00000221914	PPP2R2A	protein_coding	Intergenic	.	.	Alu	0.166667
18	26363460	A->G	+	ENSG00000141384	TAF4B	protein_coding	Intergenic	.	.	Alu	0.363636
18	26363470	A->G	+	ENSG00000141384	TAF4B	protein_coding	Intergenic	.	.	Alu	0.181818
12	26424845	A->G	-	ENSG00000123104	ITPR2	protein_coding	Intergenic	.	.	Alu	0.307692
12	26424852	A->G	-	ENSG00000123104	ITPR2	protein_coding	Intergenic	.	.	Alu	0.3
10	26443277	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.266667
10	26443303	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.125
10	26443674	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.3
10	26443784	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.3125
10	26444843	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.25
10	26444844	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.210526
10	26447119	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.2
10	26447190	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.428571
10	26447281	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.142857
10	26543218	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.222222
10	26543238	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.125
10	26543242	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.222222
10	26543266	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.181818
10	26543291	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.5
10	26543305	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.2
10	26543307	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.214286
10	26543308	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.384615
10	26564574	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.173913
10	26564604	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.115385
10	26564616	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.08
1	26715951	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26715952	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.16129
1	26716059	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	1
1	26716085	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.214286
1	26716086	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.285714
1	26719873	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	26719883	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	26719904	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26719997	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.2
1	26719998	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26720006	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	26720131	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	26720144	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.111111
1	26720206	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.136364
1	26720425	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	26720646	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	26720676	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	26720741	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	26720743	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.105263
1	26720753	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0952381
1	26720757	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.263158
1	26736230	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.5
1	26736231	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.636364
1	26736679	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.166667
1	26736827	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	26758498	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.4
10	26773313	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.142857
10	26773339	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.111111
10	26773350	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.133333
10	26773377	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.142857
10	26827042	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.111111
10	26827185	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.307692
10	26827186	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.230769
10	26827318	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.166667
10	26827354	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.125
10	26827360	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.214286
10	26827362	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.285714
10	26851298	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.0714286
10	26853677	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.210526
10	26853747	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.166667
10	26853771	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.117647
10	26853814	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.1875
10	26853821	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.266667
9	26885176	A->G	-	ENSG00000120159	CAAP1	protein_coding	Intergenic	.	.	Alu	0.0769231
9	26934758	A->G	-	ENSG00000137055	PLAA	protein_coding	Intergenic	.	.	Alu	0.142857
9	27031986	A->G	+	ENSG00000096872	IFT74	protein_coding	Intergenic	.	.	Alu	0.2
12	27039102	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.181818
12	27039269	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.5
12	27039276	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.181818
12	27039408	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0588235
12	27039409	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.264706
12	27039418	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0909091
12	27039431	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.142857
12	27039432	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.740741
12	27039482	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.318182
12	27039669	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0740741
12	27039671	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0740741
12	27039714	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0645161
12	27039751	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0625
12	27039780	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.578947
12	27039790	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.538462
12	27039816	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0952381
12	27039817	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.142857
12	27039832	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.25
12	27039857	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.769231
12	27039897	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.148148
12	27039902	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.266667
12	27039911	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.125
10	27125779	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.166667
10	27125805	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.333333
10	27125818	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.375
10	27125821	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.4375
13	27141127	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.142857
17	27302147	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.108108
17	27302153	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.292683
17	27302155	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.0487805
2	27346108	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.2
2	27346172	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.3125
2	27346227	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.214286
2	27346616	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.2
22	27909360	A->G	-	ENSG00000180957	PITPNB	protein_coding	Intergenic	.	.	Alu	0.272727
22	27910062	A->G	-	ENSG00000180957	PITPNB	protein_coding	Intergenic	.	.	Alu	0.117647
22	27910083	A->G	-	ENSG00000180957	PITPNB	protein_coding	Intergenic	.	.	Alu	0.0769231
13	28028512	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.3
13	28028614	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.230769
13	28028645	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28028836	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.333333
13	28028844	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28028867	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.125
13	28028874	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.444444
13	28028879	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.705882
13	28028884	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.235294
13	28028920	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.428571
13	28028946	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.1
13	28028961	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.136364
13	28028970	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.695652
13	28028983	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.0769231
13	28028995	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.346154
13	28029000	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.2
13	28029009	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.130435
13	28029049	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.1875
13	28029055	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.8125
13	28029173	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.166667
13	28029268	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28029270	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.2
13	28029309	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.266667
13	28029329	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	1
13	28029346	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28146716	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.307692
13	28146723	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.1875
13	28146739	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.157895
13	28146767	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.315789
13	28146821	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0588235
13	28146823	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.09375
13	28146828	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.115385
13	28146848	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0909091
13	28146854	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.171429
13	28146867	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0606061
13	28146887	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0930233
13	28146964	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0833333
13	28146965	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0869565
13	28150464	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28150468	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28150526	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.206897
13	28152419	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28152463	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.133333
13	28156874	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0444444
13	28156927	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0384615
13	28188408	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.166667
13	28188490	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0425532
13	28188521	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28188543	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.361702
13	28188552	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.217391
13	28189436	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.307692
13	28189461	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.272727
13	28189471	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.466667
13	28189497	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28189499	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.230769
13	28189501	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.25
13	28190528	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.692308
13	28193478	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0645161
13	28193486	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0625
13	28193509	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0555556
13	28193517	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0952381
13	28193522	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.125
13	28193532	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.111111
13	28193596	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.125
13	28193612	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0701754
13	28193622	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.132353
13	28193628	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.028169
13	28193645	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0487805
13	28193663	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.155556
13	28193684	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0444444
13	28193688	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.119048
13	28193937	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.277778
13	28193971	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0526316
13	28193992	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.125
13	28194010	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0769231
13	28194026	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.08
13	28194036	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.636364
13	28194037	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.6875
13	28194077	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.179487
13	28194078	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.146341
13	28194109	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0526316
13	28194114	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0714286
13	28198159	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.8
13	28198165	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.5
13	28198166	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.7
13	28205569	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28205653	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.105263
13	28205696	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.08
13	28205722	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.3
13	28205736	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.222222
13	28205750	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.2
13	28217362	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0681818
13	28217435	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0689655
12	28232961	A->G	+	ENSG00000123106	CCDC91	protein_coding	Intergenic	.	.	Alu	0.133333
13	28241183	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28264305	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.227273
13	28264306	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.136364
13	28264332	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.266667
13	28264412	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.307692
13	28264418	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.666667
13	28264419	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.375
13	28264448	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28264460	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.777778
15	28304470	A->G	-	ENSG00000128731	HERC2	protein_coding	Intergenic	.	.	Alu	0.5
10	28538357	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.111111
10	28538405	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0666667
10	28538406	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.444444
10	28538417	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0588235
10	28538420	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0377358
10	28538431	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0746269
10	28538435	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0615385
10	28538452	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0357143
10	28538468	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.101449
10	28538471	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.188406
10	28538488	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.106061
10	28538497	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.12
10	28538502	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0229885
10	28538532	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0253165
10	28538534	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0253165
10	28538665	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0512821
10	28538704	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0273973
10	28538708	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.144737
10	28538711	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0779221
10	28538827	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0519481
10	28539639	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0689655
10	28539688	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.25
10	28539742	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.25
10	28539756	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.166667
10	28539760	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.1875
10	28539793	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.117647
10	28544844	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.133333
10	28544984	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0357143
10	28545277	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0869565
17	28566843	A->G	-	ENSG00000087111	PIGS	protein_coding	Intergenic	.	.	Alu	0.181818
17	28667250	A->G	+	ENSG00000109111	SUPT6H	protein_coding	Intergenic	.	.	Alu	0.6
17	28667256	A->G	+	ENSG00000109111	SUPT6H	protein_coding	Intergenic	.	.	Alu	0.4
17	28721990	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.357143
17	28721991	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.416667
17	28722007	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.181818
17	28722058	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.333333
17	28722068	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.2
17	28722100	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.366667
17	28722209	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.0526316
17	28722308	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.404255
17	28722315	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.0425532
17	28722320	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.139535
17	28722353	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.129032
17	28722388	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.105263
17	28722397	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.130435
1	28750986	A->G	+	ENSG00000198492	YTHDF2	protein_coding	Intergenic	.	.	Alu	0.3
1	28753441	A->G	+	ENSG00000198492	YTHDF2	protein_coding	Intergenic	.	.	Alu	0.157895
2	28763769	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.4
2	28763774	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.2
2	28763809	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.111111
2	28763845	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0909091
2	28763863	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.105263
2	28763880	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0645161
2	28763889	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.16129
2	28763948	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.14
2	28763953	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.1
2	28763975	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0652174
2	28764205	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0444444
2	28764206	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0434783
2	28764313	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.1
2	28764326	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.15
2	28764349	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.133333
2	28764410	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.166667
2	28764742	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.25
2	28764744	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.166667
2	28764800	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.2
2	28784773	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0833333
2	28784799	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.08
2	28784800	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0833333
2	28786170	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.2
2	28786188	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.5
2	28786214	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.461538
2	28786247	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.352941
2	28786252	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.222222
2	28786253	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.222222
2	28786266	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.125
2	28786584	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.181818
2	28786641	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.16129
2	28786654	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.25
2	28786660	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.333333
22	28797530	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.222222
22	28797564	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.133333
22	28797589	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.206897
22	28798401	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0714286
22	28798405	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.138889
22	28798446	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.037037
22	28798447	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.025
22	28798453	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0666667
22	28798502	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.037037
22	28798516	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0967742
22	28798536	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.152542
22	28798551	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0806452
22	28798829	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0566038
22	28798852	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0877193
17	28830050	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.166667
2	28857071	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.333333
2	28857206	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.181818
16	28913028	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.166667
16	28913036	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.181818
16	28918218	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.363636
16	28918433	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.2
16	28918515	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.454545
16	28918532	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.333333
16	28918552	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.153846
16	28918568	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.166667
16	28918569	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.181818
8	28927988	A->G	+	ENSG00000147421	HMBOX1	protein_coding	Intergenic	.	.	Alu	0.166667
2	28939986	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.333333
2	28940067	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.1875
8	28951912	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.6
8	28951913	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.5
8	28952072	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.272727
8	28952334	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.363636
8	28952351	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.75
8	28952418	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.105263
8	28952439	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.5
8	28952508	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.384615
16	28958083	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.117647
16	28958085	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.277778
16	28958188	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.190476
16	28958221	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	1
16	28958230	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.111111
16	28958241	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.333333
16	28958248	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.3125
16	28958249	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.117647
16	28958262	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.45
16	28958271	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.2
16	28958319	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.166667
16	29119551	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
16	29119557	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.636364
16	29119558	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
16	29119579	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.454545
16	29119593	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
16	29119631	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
16	29119897	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
16	29119953	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.833333
16	29119954	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.923077
16	29119995	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.384615
16	29120009	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
1	29173565	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.357143
1	29173574	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.545455
1	29177485	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.16
1	29177486	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.0925926
1	29178492	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.0224719
17	29275115	A->G	-	ENSG00000108256	NUFIP2	protein_coding	Intergenic	.	.	Alu	0.0769231
12	29319155	A->G	-	ENSG00000064763	FAR2	protein_coding	Intergenic	.	.	Alu	0.2
12	29319194	A->G	-	ENSG00000064763	FAR2	protein_coding	Intergenic	.	.	Alu	0.190476
12	29319264	A->G	-	ENSG00000064763	FAR2	protein_coding	Intergenic	.	.	Alu	0.142857
16	29390735	A->G	+	ENSG00000254206	NPIPB11	protein_coding	Intergenic	.	.	Alu	0.181818
16	29390803	A->G	+	ENSG00000254206	NPIPB11	protein_coding	Intergenic	.	.	Alu	0.2
16	29392635	A->G	+	ENSG00000254206	NPIPB11	protein_coding	Intergenic	.	.	Alu	0.3
16	29424226	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
16	29424232	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
16	29424240	A->G	-	.	.	.	Intergenic	.	.	Alu	0.538462
16	29424241	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
17	29558123	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
13	29588606	A->G	-	ENSG00000139514	SLC7A1	protein_coding	Intergenic	.	.	Alu	0.133333
13	29588642	A->G	-	ENSG00000139514	SLC7A1	protein_coding	Intergenic	.	.	Alu	0.1
17	29730116	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.363636
17	29730117	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.25
17	29730574	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.214286
17	29730600	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.181818
17	29730603	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.181818
17	29741938	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.6
6	29894242	A->G	+	.	.	.	Intergenic	.	.	Alu	1
17	29916558	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.142857
22	29945535	A->G	+	ENSG00000100330	MTMR3	protein_coding	Intergenic	.	.	Alu	0.357143
22	29945649	A->G	+	ENSG00000100330	MTMR3	protein_coding	Intergenic	.	.	Alu	0.222222
8	30101588	A->G	+	ENSG00000104660	LEPROTL1	protein_coding	Intergenic	.	.	Alu	0.166667
8	30178244	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.166667
8	30178287	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.166667
8	30178378	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.2
7	30316025	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.153846
7	30316027	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.153846
7	30316034	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.117647
7	30316039	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.411765
7	30316102	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.2
7	30316103	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.2
7	30316113	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.214286
7	30316124	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.125
7	30316141	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.125
7	30316167	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.117647
7	30316168	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.285714
7	30316217	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.230769
7	30316278	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.3
13	30357202	A->G	-	ENSG00000238121	LINC00426	lincRNA	Intergenic	.	.	Alu	0.5
13	30449436	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
13	30449502	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
6	30492077	A->G	+	ENSG00000204592	HLA-E	protein_coding	Intergenic	.	.	Alu	0.166667
7	30622876	A->G	+	ENSG00000106105	GARS	protein_coding	Intergenic	.	.	Alu	0.153846
17	30714032	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.307692
17	30714161	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.230769
17	30714170	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.214286
17	30714193	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
17	30761114	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0769231
17	30764098	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.117647
8	30811634	A->G	-	ENSG00000104695	PPP2CB	protein_coding	Intergenic	.	.	Alu	0.133333
17	30816582	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.3
17	30816657	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.166667
17	30816658	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.166667
17	30816692	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.142857
15	30845464	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
15	30896378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
15	30933858	A->G	-	ENSG00000198690	FAN1	protein_coding	Intergenic	.	.	Alu	0.1875
14	30980515	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.153846
14	30980536	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.133333
14	30980643	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.166667
14	30980651	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.181818
1	31015470	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	31015480	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31015506	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.125
1	31015518	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.142857
1	31015583	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	31015812	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.125
1	31015968	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.333333
1	31019135	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31019189	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.333333
1	31019230	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.181818
1	31019269	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.166667
14	31019972	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.588235
14	31019995	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.111111
14	31019996	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.235294
14	31020004	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.125
14	31020018	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.166667
1	31025619	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.333333
1	31025667	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.291667
1	31025694	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.08
1	31025744	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.166667
1	31025759	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	31033349	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31033562	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.125
1	31033734	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31039424	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.454545
1	31039429	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31039809	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.3
1	31039812	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.272727
1	31042937	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31043327	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.142857
1	31043340	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.307692
1	31043343	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.3
1	31046645	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.5
1	31046704	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.181818
1	31048720	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.153846
1	31048754	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.125
8	31049361	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.111111
8	31049411	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0967742
8	31049451	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.136364
1	31053098	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.142857
8	31070899	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.3
8	31070925	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.146341
8	31070926	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.317073
8	31070987	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.1
8	31071621	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.333333
8	31071716	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.214286
8	31071717	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.5
8	31071734	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.272727
8	31075496	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.181818
8	31075503	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0666667
8	31075621	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.09375
8	31075661	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.181818
16	31122003	A->G	+	ENSG00000103510	KAT8	protein_coding	Intergenic	.	.	Alu	0.4
16	31122734	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	1
16	31122760	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.636364
16	31122766	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.3
16	31123286	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.6
16	31123310	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.363636
16	31123530	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.571429
16	31123560	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.454545
16	31123607	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.285714
16	31123641	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.6
16	31123646	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.333333
16	31124852	A->G	+	ENSG00000103510	KAT8	protein_coding	Intergenic	.	.	Alu	0.2
16	31125058	A->G	+	ENSG00000103510	KAT8	protein_coding	Intergenic	.	.	Alu	0.166667
16	31125071	A->G	+	ENSG00000103510	KAT8	protein_coding	Intergenic	.	.	Alu	0.181818
14	31137263	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.181818
14	31137268	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.818182
14	31137381	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.181818
14	31137402	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.5
8	31159834	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.133333
17	31285221	A->G	+	ENSG00000126861	OMG	protein_coding	Intergenic	.	.	Alu	0.7
12	31309733	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.1
12	31309798	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.125
12	31309803	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.0487805
12	31309830	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.121212
10	31348444	A->G	+	ENSG00000148516	ZEB1	protein_coding	Intergenic	.	.	Alu	0.111111
16	31453062	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.125
16	31453063	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.1875
16	31453227	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.428571
16	31453262	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.5
16	31453268	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.166667
3	31541663	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.2
3	31541716	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.333333
3	31542865	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.181818
3	31542880	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.103448
3	31542998	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.08
20	31564362	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.153846
20	31564937	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0666667
20	31564977	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0625
20	31564978	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0625
20	31565045	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.107143
20	31565055	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0869565
20	31565215	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.105263
20	31565221	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.235294
20	31565223	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.111111
20	31565224	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.105263
20	31565250	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.363636
20	31565428	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.181818
20	31575715	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.153846
20	31575787	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.2
22	31638733	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.111111
22	31638737	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.166667
22	31638910	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.129032
22	31638916	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0909091
22	31638932	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0869565
22	31638935	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0869565
22	31638978	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.823529
22	31639090	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0952381
22	31639105	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.269231
22	31639160	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0869565
6	31752292	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.4
6	31752468	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.133333
6	31752497	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.157895
6	31752511	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.0833333
6	31752533	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.0909091
6	31752534	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.142857
6	31752538	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.368421
6	31752558	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	1
6	31752559	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.266667
6	31752573	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.1875
6	31752599	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.315789
6	31752635	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.230769
22	31786137	A->G	+	ENSG00000100150	DEPDC5	protein_coding	Intergenic	.	.	Alu	0.6
22	31787719	A->G	+	ENSG00000100150	DEPDC5	protein_coding	Intergenic	.	.	Alu	0.272727
2	31906065	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0769231
2	31906069	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0882353
2	31906084	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.37037
2	31906101	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.117647
2	31906110	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.264706
2	31906168	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.133333
2	31906171	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	31906242	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.315789
1	31922752	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.0769231
1	31922821	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.1
1	31922888	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.1
1	31923106	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.1875
1	31923107	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.176471
1	31923299	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.105263
2	31930141	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.384615
2	31930147	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	1
2	31930151	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	1
2	31930680	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	31930682	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	31930713	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.238095
2	31930718	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.217391
2	31930774	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.454545
2	31930778	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.272727
2	31930784	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.5
2	31930792	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31930852	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.3
2	31990537	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.111111
2	31990549	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.133333
2	31990559	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	31990627	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.138889
2	31990628	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.263158
2	31990686	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.148148
2	31990702	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.148148
2	31999561	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	31999575	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.588235
2	31999587	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31999588	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.133333
2	31999618	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	31999639	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.636364
2	31999644	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	31999938	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.615385
2	31999954	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0833333
2	31999988	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.538462
2	32000058	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0444444
2	32000064	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0540541
2	32000067	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0833333
2	32000086	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	32000089	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	32000113	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.107143
2	32000153	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0930233
2	32000167	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0857143
2	32000341	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	32000369	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.117647
2	32000647	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	32001150	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.210526
2	32001154	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.210526
10	32013133	A->G	-	ENSG00000170759	KIF5B	protein_coding	Intergenic	.	.	Alu	0.2
1	32019403	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.0869565
18	32029441	A->G	+	ENSG00000101695	RNF125	protein_coding	Intergenic	.	.	Alu	0.2
18	32047916	A->G	+	ENSG00000101695	RNF125	protein_coding	Intergenic	.	.	Alu	0.181818
18	32058035	A->G	+	ENSG00000101695	RNF125	protein_coding	Intergenic	.	.	Alu	0.4
1	32059037	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.111111
1	32059111	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	32065663	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.235294
1	32065728	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.230769
1	32065737	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.142857
1	32065738	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.133333
1	32065799	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.307692
1	32065803	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.411765
1	32066157	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.153846
1	32066192	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.166667
2	32066815	A->G	+	ENSG00000021574	SPAST	protein_coding	Intergenic	.	.	Alu	0.2
20	32112574	A->G	+	ENSG00000101337	TM9SF4	protein_coding	Intergenic	.	.	Alu	0.1
18	32121050	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.153846
18	32121077	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.166667
18	32121410	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.230769
1	32122723	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.181818
1	32122732	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.181818
1	32143143	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.142857
1	32143163	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.166667
1	32143248	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.5
1	32143327	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.363636
1	32143328	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.818182
1	32143420	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.866667
5	32152265	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.0769231
5	32152700	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.25
17	32154519	A->G	+	ENSG00000126858	RHOT1	protein_coding	Intergenic	.	.	Alu	0.4
5	32164532	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.294118
5	32164558	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.15
5	32164601	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.636364
5	32164667	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.125
5	32164668	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.125
5	32164681	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.230769
5	32164997	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.2
5	32165002	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.285714
5	32165048	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.428571
5	32165120	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.588235
5	32165173	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.0952381
5	32165181	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.294118
2	32281629	A->G	+	ENSG00000119820	YIPF4	protein_coding	Intergenic	.	.	Alu	0.454545
10	32300519	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.2
1	32324075	A->G	+	ENSG00000116478	HDAC1	protein_coding	Intergenic	.	.	Alu	0.363636
17	32352068	A->G	+	ENSG00000010244	ZNF207	protein_coding	Intergenic	.	.	Alu	0.181818
10	32355682	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.105263
10	32355716	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	1
10	32355722	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	1
10	32357668	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.166667
10	32357917	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.210526
10	32357992	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.178571
10	32357993	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.0833333
10	32358048	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.117647
10	32358049	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.1875
10	32358127	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.25
10	32360746	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.3125
20	32361455	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.25
20	32361473	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.133333
10	32364131	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.136364
10	32364152	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.208333
10	32364153	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.208333
10	32364260	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.173913
2	32371048	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.529412
2	32371053	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0789474
2	32371092	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.333333
2	32371102	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.111111
2	32371145	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.25
2	32371439	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.1875
2	32371444	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.222222
2	32371455	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.266667
2	32371475	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.1875
2	32371492	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.285714
2	32371514	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.125
2	32371558	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.111111
2	32372709	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.166667
2	32372731	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.133333
20	32375210	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.117647
20	32375322	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.0869565
20	32375328	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.130435
20	32375369	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.25
20	32375374	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.166667
20	32376473	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.2
1	32389174	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.153846
17	32389664	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
17	32389670	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
17	32389700	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
17	32391938	A->G	+	.	.	.	Intergenic	.	.	Alu	0.545455
17	32391945	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
17	32391954	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
17	32391999	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
17	32392020	A->G	+	.	.	.	Intergenic	.	.	Alu	0.538462
17	32392123	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
17	32392124	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
17	32392140	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
17	32392199	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
17	32392205	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
17	32392327	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
17	32392339	A->G	+	.	.	.	Intergenic	.	.	Alu	0.692308
17	32392480	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	32392488	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
17	32392564	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	32392575	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
5	32397996	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.0645161
5	32429259	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.2
5	32436313	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.1875
5	32438331	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.1
17	32451050	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.214286
17	32451054	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.333333
17	32451109	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.142857
2	32455259	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0425532
2	32455265	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0769231
2	32455269	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0408163
2	32455300	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0338983
2	32455301	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0833333
17	32461207	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.4
17	32461217	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.538462
17	32461406	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.428571
17	32461450	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.357143
17	32461451	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.642857
17	32461460	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.181818
2	32462702	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.2
2	32462772	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.25
2	32462778	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.727273
7	32519410	A->G	+	ENSG00000105778	AVL9	protein_coding	Intergenic	.	.	Alu	0.125
3	32533985	A->G	-	ENSG00000144635	DYNC1LI1	protein_coding	Intergenic	.	.	Alu	0.2
1	32547728	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.2
1	32547917	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.142857
1	32548602	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.176471
2	32553487	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.125
2	32553488	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.25
2	32553491	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.1
1	32554077	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.3
3	32555008	A->G	-	ENSG00000144635	DYNC1LI1	protein_coding	Intergenic	.	.	Alu	0.1
3	32555097	A->G	-	ENSG00000144635	DYNC1LI1	protein_coding	Intergenic	.	.	Alu	0.190476
15	32580934	A->G	+	ENSG00000261064	LINC02256	lincRNA	Intergenic	.	.	Alu	0.133333
1	32583217	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.2
1	32583218	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.2
1	32583219	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.2
5	32588763	A->G	+	ENSG00000113387	SUB1	protein_coding	Intergenic	.	.	Alu	0.333333
13	32597684	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.2
13	32597726	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.2
1	32676130	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.130435
1	32676150	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.153846
1	32676159	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.0909091
1	32676341	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.2
1	32676423	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.52381
1	32676489	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.533333
1	32676490	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.1875
1	32676535	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.235294
12	32701789	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.111111
12	32701792	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.105263
12	32701802	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.181818
12	32701808	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.0952381
12	32701828	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.142857
12	32701845	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.2
12	32701853	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.217391
12	32702024	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.230769
12	32702057	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.266667
12	32702058	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.4
12	32702113	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.157895
12	32702127	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.2
7	32758721	A->G	+	ENSG00000229358	DPY19L1P1	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
1	32790129	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.333333
1	32802945	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.2
1	32802950	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.125
1	32803056	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.157895
1	32803115	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.25
1	32803174	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.136364
1	32803177	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.217391
1	32803225	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.1
1	32803246	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.266667
1	32803250	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.5
20	32833096	A->G	+	ENSG00000101367	MAPRE1	protein_coding	Intergenic	.	.	Alu	0.181818
20	32833122	A->G	+	ENSG00000101367	MAPRE1	protein_coding	Intergenic	.	.	Alu	0.6
11	32924409	A->G	+	ENSG00000060749	QSER1	protein_coding	Intergenic	.	.	Alu	0.2
11	32924480	A->G	+	ENSG00000060749	QSER1	protein_coding	Intergenic	.	.	Alu	0.272727
9	33027730	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.111111
9	33027756	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.1
9	33027791	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.176471
9	33037503	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.0689655
9	33037632	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.142857
9	33251186	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.384615
9	33251265	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.111111
9	33251266	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.111111
9	33251279	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.2
9	33251284	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.166667
9	33251528	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.25
9	33251531	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.5
9	33251628	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.142857
9	33251655	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.230769
9	33251681	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.142857
9	33251693	A->G	-	ENSG00000107262	BAG1	protein_coding	Intergenic	.	.	Alu	0.142857
21	33262309	A->G	+	ENSG00000159110	IFNAR2	protein_coding	Intergenic	.	.	Alu	0.181818
11	33265510	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33265618	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.08
11	33265653	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.1
11	33265698	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	33265723	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	33265830	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.16
11	33265831	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.192308
11	33265869	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.125
11	33265973	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.176471
11	33265990	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.1
11	33266004	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.08
11	33267625	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.3
11	33267635	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.272727
11	33267986	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.2
11	33268024	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	33268025	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.230769
11	33268033	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	33268034	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.230769
11	33268035	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.375
11	33268064	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	33268091	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	33268117	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.538462
11	33268323	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.461538
11	33268332	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	33268353	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.357143
11	33268363	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.222222
11	33268369	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	33268381	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33268385	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0714286
11	33268399	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0689655
11	33268412	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.25
11	33268416	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.130435
11	33268432	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	33268470	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.1875
11	33268500	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.157895
11	33268512	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33268516	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.235294
11	33268536	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	33273360	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.285714
11	33278723	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	33279059	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.25
11	33279060	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.333333
11	33279191	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	33279256	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0666667
1	33328489	A->G	-	ENSG00000134686	PHC2	protein_coding	Intergenic	.	.	Alu	0.181818
1	33328491	A->G	-	ENSG00000134686	PHC2	protein_coding	Intergenic	.	.	Alu	0.2
3	33434377	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.26087
3	33434410	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.115385
3	33434426	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.227273
3	33434435	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.266667
3	33434436	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0689655
3	33434449	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.666667
3	33434462	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.173913
3	33434475	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.103448
3	33434500	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	33434505	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	33434554	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.173913
3	33434559	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.173913
3	33434784	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0769231
3	33434851	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	33434890	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.116279
3	33434951	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.227273
3	33434960	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.363636
3	33511157	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.4
21	33525127	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.125
21	33525168	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.153846
21	33525293	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.3
21	33525307	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.166667
21	33525308	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.333333
21	33525493	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.5625
21	33525595	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.230769
21	33526111	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.181818
21	33526136	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.285714
21	33526141	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	1
21	33526156	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.166667
21	33526183	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.0869565
21	33526211	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.428571
21	33526228	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.190476
21	33526231	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.444444
21	33526267	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.181818
21	33526295	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.2
21	33526308	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.2
21	33526311	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.4
21	33526367	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.5
21	33526369	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.230769
21	33526377	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.272727
21	33526453	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.2
21	33526469	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.266667
3	33548035	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	33548436	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0487805
3	33548475	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0666667
3	33548892	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0512821
3	33548906	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0588235
3	33695135	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.181818
11	33877527	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.0909091
11	33877532	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.0952381
11	33877567	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.1
11	33877589	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.0869565
11	33877593	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.0952381
9	33979951	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.2
9	33989299	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.25
9	33990728	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.181818
9	33990774	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.181818
9	33990775	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.166667
9	33990777	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.7
9	33991067	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.6
20	33998941	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.0869565
20	33998975	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.0769231
20	33998983	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.08
20	33999010	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.214286
20	33999051	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.0952381
20	34007745	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.230769
20	34011904	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.166667
20	34011972	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.166667
20	34012010	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.181818
20	34028211	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.181818
20	34054711	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.1875
11	34089178	A->G	+	ENSG00000135387	CAPRIN1	protein_coding	Intergenic	.	.	Alu	0.416667
15	34096900	A->G	-	ENSG00000134153	EMC7	protein_coding	Intergenic	.	.	Alu	0.545455
15	34096905	A->G	-	ENSG00000134153	EMC7	protein_coding	Intergenic	.	.	Alu	0.166667
15	34097130	A->G	-	ENSG00000134153	EMC7	protein_coding	Intergenic	.	.	Alu	0.181818
15	34097172	A->G	-	ENSG00000134153	EMC7	protein_coding	Intergenic	.	.	Alu	0.2
15	34098554	A->G	-	ENSG00000134153	EMC7	protein_coding	Intergenic	.	.	Alu	0.181818
11	34103640	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0714286
11	34121739	A->G	+	ENSG00000135372	NAT10	protein_coding	Intergenic	.	.	Alu	0.153846
11	34121943	A->G	+	ENSG00000135372	NAT10	protein_coding	Intergenic	.	.	Alu	0.2
11	34122097	A->G	+	ENSG00000135372	NAT10	protein_coding	Intergenic	.	.	Alu	0.2
19	34188110	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34188150	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.2
19	34188180	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.133333
5	34189176	A->G	-	ENSG00000215158	AC138409.2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.357143
19	34192459	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	1
19	34192465	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.615385
19	34192473	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.25
19	34192577	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.933333
19	34192737	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.8
19	34192743	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.4
19	34192779	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.296296
19	34192793	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.636364
19	34192832	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.230769
19	34192848	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.136364
19	34192850	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.136364
19	34192858	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.421053
19	34192859	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.789474
19	34192864	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.176471
19	34192885	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.142857
19	34192905	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.111111
19	34192918	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.333333
19	34192920	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.2
19	34192929	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.277778
19	34202346	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34202351	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34202784	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.75
19	34202794	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.333333
19	34202918	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.133333
19	34203544	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.1875
19	34203545	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.117647
19	34203613	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0909091
19	34203614	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.181818
19	34203618	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.391304
19	34203635	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0833333
19	34203682	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0789474
19	34203683	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.25
19	34203688	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.205882
19	34203696	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.115385
19	34203724	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.12
19	34203728	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0833333
19	34203754	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0540541
19	34204882	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.153846
19	34205047	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.1875
19	34205052	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.181818
19	34205322	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.105263
9	34206460	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.0952381
9	34218158	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.2
9	34218173	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.2
9	34228363	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.181818
15	34247759	A->G	-	ENSG00000140199	SLC12A6	protein_coding	Intergenic	.	.	Alu	0.3
15	34247765	A->G	-	ENSG00000140199	SLC12A6	protein_coding	Intergenic	.	.	Alu	0.181818
15	34247783	A->G	-	ENSG00000140199	SLC12A6	protein_coding	Intergenic	.	.	Alu	0.454545
15	34326783	A->G	-	ENSG00000140199	SLC12A6	protein_coding	Intergenic	.	.	Alu	0.2
20	34365038	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0714286
20	34365047	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0454545
20	34365048	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0444444
20	34365115	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.162162
20	34365445	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34365495	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.105263
20	34365541	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34365544	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.285714
20	34365619	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.347826
20	34365658	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.135135
20	34365677	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0833333
20	34366276	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0512821
20	34366409	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0909091
20	34366612	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.08
20	34369826	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.1
20	34369895	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.25
20	34370048	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0454545
20	34370431	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.125
20	34370502	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34370608	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.1875
20	34370613	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.15625
20	34371007	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.2
20	34371008	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.272727
20	34378354	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.097561
20	34378425	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0714286
6	34385726	A->G	-	ENSG00000272325	NUDT3	protein_coding	Intergenic	.	.	Alu	0.2
20	34410135	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.15
20	34410248	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.133333
20	34431158	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34431189	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34431292	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.230769
20	34431302	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34431314	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.285714
20	34431348	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.25
20	34431853	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34431854	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.636364
20	34431862	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.25
20	34431869	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34431897	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.15
20	34431923	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.105263
20	34431924	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.25
19	34439115	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.2
19	34439580	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.166667
19	34440689	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.12
19	34440803	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.12
19	34440837	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.0952381
19	34440913	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.130435
19	34441800	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.125
19	34441832	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.181818
14	34517508	A->G	-	ENSG00000129518	EAPP	protein_coding	Intergenic	.	.	Alu	0.166667
6	34682145	A->G	-	ENSG00000196821	C6orf106	protein_coding	Intergenic	.	.	Alu	0.2
20	34730817	A->G	-	ENSG00000198646	NCOA6	protein_coding	Intergenic	.	.	Alu	0.133333
21	34804816	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.111111
6	34808223	A->G	+	ENSG00000065060	UHRF1BP1	protein_coding	Intergenic	.	.	Alu	0.0833333
6	34808252	A->G	+	ENSG00000065060	UHRF1BP1	protein_coding	Intergenic	.	.	Alu	0.166667
6	34808266	A->G	+	ENSG00000065060	UHRF1BP1	protein_coding	Intergenic	.	.	Alu	0.153846
6	34808267	A->G	+	ENSG00000065060	UHRF1BP1	protein_coding	Intergenic	.	.	Alu	0.3125
21	34853945	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.272727
21	34863692	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.0784314
21	34863749	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.0606061
21	34863755	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.130435
21	34948821	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.272727
21	34961955	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.35
21	34961965	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.105263
21	34962031	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.375
21	34962041	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.210526
21	34962048	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.111111
21	34962056	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.176471
21	34962057	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.222222
21	34962110	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.111111
20	35031315	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.117647
20	35031491	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.166667
20	35031495	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.153846
9	35047267	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
9	35047271	A->G	-	.	.	.	Intergenic	.	.	Alu	0.266667
9	35047277	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
9	35047563	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
9	35047598	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
9	35047600	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
9	35047609	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
9	35047631	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
9	35047994	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
9	35048019	A->G	-	.	.	.	Intergenic	.	.	Alu	0.285714
18	35063738	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.2
18	35063739	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.1875
18	35063791	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.133333
18	35063806	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.5
18	35063905	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.2
18	35063918	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0952381
18	35063955	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0869565
18	35064088	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0952381
18	35064126	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.15
18	35064130	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.133333
18	35064131	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.3125
17	35076088	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.433333
17	35076170	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.166667
17	35076210	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.0740741
17	35076217	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.133333
17	35076221	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.09375
17	35076261	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.214286
17	35076436	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.210526
17	35076437	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.277778
17	35076464	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.5
17	35076513	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.307692
17	35076595	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.142857
17	35076639	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.466667
9	35087263	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
14	35098452	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.15
14	35108860	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.25
14	35108861	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.25
14	35109655	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.25
14	35109729	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.272727
14	35114801	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.545455
14	35115225	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.294118
14	35115287	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.153846
14	35115291	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.142857
14	35115319	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.2
14	35115437	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.222222
14	35115441	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.45
10	35355477	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.125
10	35355531	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.214286
10	35355544	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.428571
10	35355557	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.133333
17	35573484	A->G	+	ENSG00000267321	LINC02001	lincRNA	Intergenic	.	.	Alu	0.363636
17	35599713	A->G	+	ENSG00000006125	AP2B1	protein_coding	Intergenic	.	.	Alu	0.3
17	35600319	A->G	+	ENSG00000006125	AP2B1	protein_coding	Intergenic	.	.	Alu	0.181818
20	35727814	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.0681818
20	35727865	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.119048
20	35728059	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.153846
9	35759442	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
9	35765536	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
9	35765554	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
19	35771110	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
20	35775502	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.208333
20	35775507	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.0833333
20	35775572	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.578947
20	35775595	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.153846
20	35775604	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.363636
20	35775633	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.470588
20	35775634	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.125
20	35775675	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.777778
20	35802919	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.2
1	35813669	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.214286
1	35813674	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.3125
1	35813888	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35813928	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.153846
7	35814798	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.133333
7	35814894	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.0606061
7	35814907	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.0588235
1	35816727	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.153846
1	35816781	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.125
1	35819327	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.4
1	35819354	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.181818
1	35819594	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.818182
1	35819612	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.722222
1	35819618	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.333333
1	35819674	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35819678	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.214286
20	35821585	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.2
20	35821591	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.181818
17	35827215	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.473684
17	35827221	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.117647
17	35827225	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.133333
17	35827495	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.25
17	35827518	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.52
17	35827529	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.0952381
17	35827559	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.1
17	35827586	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.217391
17	35827591	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.0689655
17	35827662	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.104167
17	35827695	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.05
1	35829728	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35829729	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35829829	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.5
1	35829994	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.416667
1	35830029	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.111111
1	35830070	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.15
1	35830088	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.266667
1	35831106	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.153846
1	35831107	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.166667
1	35831242	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35833069	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.2
6	35837804	A->G	-	ENSG00000096063	SRPK1	protein_coding	Intergenic	.	.	Alu	0.2
20	35882907	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.363636
7	35888548	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.2
7	35888618	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.4
7	35888699	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.285714
7	35888722	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.133333
7	35888740	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.111111
7	35888752	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.1
7	35888777	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.210526
1	35933388	A->G	+	ENSG00000126070	AGO3	protein_coding	Intergenic	.	.	Alu	0.08
1	35933414	A->G	+	ENSG00000126070	AGO3	protein_coding	Intergenic	.	.	Alu	0.103448
1	35933452	A->G	+	ENSG00000126070	AGO3	protein_coding	Intergenic	.	.	Alu	0.0666667
1	35958540	A->G	+	ENSG00000126070	AGO3	protein_coding	Intergenic	.	.	Alu	0.1
18	36003891	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.2
18	36003914	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.181818
18	36003922	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.153846
18	36003927	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.133333
18	36019205	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.3
18	36019246	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.9
18	36019302	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.230769
18	36019312	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.384615
18	36019317	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.666667
18	36019374	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.2
18	36019380	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.909091
18	36019402	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.25
18	36019783	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.695652
18	36019788	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.461538
18	36019848	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.764706
18	36019857	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	1
18	36019868	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.2
18	36019877	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.176471
18	36019892	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.190476
18	36019918	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.894737
18	36019957	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.692308
18	36019958	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.461538
18	36019993	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.2
18	36020018	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.272727
18	36020026	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.857143
18	36024209	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.384615
18	36024244	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.333333
18	36024275	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.153846
18	36024279	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.181818
6	36030629	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.125
6	36036113	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.133333
6	36037868	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.0588235
1	36236131	A->G	+	ENSG00000054118	THRAP3	protein_coding	Intergenic	.	.	Alu	0.2
21	36346885	A->G	+	ENSG00000159256	MORC3	protein_coding	Intergenic	.	.	Alu	0.2
21	36350200	A->G	+	ENSG00000159256	MORC3	protein_coding	Intergenic	.	.	Alu	0.181818
9	36365804	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.272727
22	36375806	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.111111
22	36375820	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.666667
22	36376058	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.222222
22	36376059	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.0869565
22	36376099	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.0645161
21	36390239	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.2
21	36396152	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.916667
21	36396180	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.133333
21	36396209	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.176471
21	36396220	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.294118
21	36396402	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.9
21	36396455	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.4375
21	36396459	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.214286
21	36396460	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.133333
21	36396496	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.466667
21	36396499	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.125
6	36449998	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.3
1	36476745	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0441176
1	36476763	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0576923
1	36476768	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0594059
1	36476825	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0673077
1	36476878	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.217949
1	36476889	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0263158
1	36476916	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.162162
1	36476919	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.236842
1	36476943	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0350877
9	36480205	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.153846
9	36480649	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.142857
9	36480787	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.105263
9	36480788	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.277778
9	36480800	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.1
6	36498659	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.166667
6	36498680	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.0666667
6	36508054	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.111111
6	36541926	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.0869565
6	36541944	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.117647
6	36541993	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.25
17	36548823	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.133333
17	36558185	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.166667
17	36559038	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.153846
17	36559042	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.133333
17	36559100	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	36559179	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.130435
17	36562695	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.133333
17	36562711	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.238095
17	36562712	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.181818
17	36562717	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.105263
17	36562739	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.117647
17	36562742	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.263158
17	36562749	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.428571
17	36562750	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.238095
17	36562779	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	36562809	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.15
17	36562814	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.1
17	36562815	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.157895
17	36562818	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.294118
17	36562822	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.2
17	36562836	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.153846
17	36562850	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.1875
17	36563146	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.142857
17	36575830	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.25
17	36575844	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.214286
20	36575971	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.176471
20	36578149	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.153846
20	36578158	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.153846
20	36578188	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.272727
20	36578210	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.214286
20	36578211	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.1875
20	36578234	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.117647
20	36578235	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.1875
20	36578236	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.388889
20	36578293	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.454545
20	36578294	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36578328	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36580570	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36580630	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36580689	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.214286
20	36580755	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.111111
20	36583433	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0909091
20	36583551	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.133333
20	36583687	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36583721	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.133333
20	36583838	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0909091
20	36583940	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0666667
20	36583956	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0731707
20	36583974	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.102564
20	36610574	A->G	+	ENSG00000101084	RAB5IF	protein_coding	Intergenic	.	.	Alu	0.333333
19	36804483	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.294118
19	36804488	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.2
19	36804614	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.3
7	36805637	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
7	36805765	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
19	36809196	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.5
19	36809252	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.133333
19	36809261	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.125
19	36809262	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.25
19	36809316	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.666667
19	36809322	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.384615
19	36809326	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.615385
19	36809358	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.142857
19	36828530	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.454545
19	36828617	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	1
19	36828623	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.166667
19	36828686	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.272727
19	36834158	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.153846
19	36834200	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.307692
20	36913129	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.181818
20	36913878	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.153846
20	36913891	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.3
7	36953156	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.133333
5	36968659	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.5
5	36968675	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.454545
20	37033115	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.105263
20	37033750	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.357143
20	37033996	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.2
20	37034015	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.181818
20	37034017	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.909091
20	37034079	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.272727
20	37034124	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.181818
7	37080535	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0555556
7	37080576	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.1
7	37080671	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.153846
7	37080740	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.210526
20	37085792	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.25
3	37098455	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.315789
3	37098456	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	37098484	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.380952
3	37098485	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.0740741
3	37098499	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.285714
3	37098513	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.0625
3	37102595	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.666667
3	37102596	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.583333
3	37102627	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.176471
3	37102739	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.272727
3	37104879	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.1875
2	37115119	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.0666667
2	37115186	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.125
2	37115329	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.333333
2	37127775	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.133333
2	37144675	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.4
2	37153414	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.272727
2	37153480	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.181818
9	37161495	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.153846
9	37164347	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.272727
9	37164402	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.272727
9	37164635	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.894737
9	37164643	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.736842
9	37164775	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.545455
9	37164803	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.2
7	37171589	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0666667
7	37200112	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0363636
7	37200146	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.15
7	37200147	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.15
7	37200185	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.333333
7	37200189	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0576923
7	37200206	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.155556
7	37200212	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.473684
7	37200238	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0909091
7	37200300	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.5
7	37200308	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.208333
7	37200313	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.12
7	37200318	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
7	37200356	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.608696
5	37208127	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.142857
5	37208148	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.230769
5	37208217	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.3
5	37208218	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.7
5	37215899	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.111111
5	37215930	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.818182
5	37215939	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37215960	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.357143
5	37215970	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.333333
5	37216055	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.823529
5	37216056	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.235294
5	37216109	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.133333
5	37216116	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.529412
5	37216281	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.0869565
5	37216299	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.619048
5	37216300	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.333333
5	37216301	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.105263
5	37216326	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	37216427	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.210526
5	37216437	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.833333
5	37216440	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.266667
5	37216466	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.85
5	37216467	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.631579
5	37216535	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.0869565
5	37216547	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.157895
5	37235639	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.230769
5	37235645	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.214286
5	37235842	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.3
5	37235843	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.4
5	37236107	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
5	37238634	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.733333
5	37238660	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.285714
5	37238671	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.25
5	37238742	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.25
5	37238754	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.6
5	37238785	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.7
3	37258563	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.2
3	37258575	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.181818
3	37260379	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.130435
3	37260392	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.111111
3	37260412	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.105263
3	37260423	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.125
3	37260493	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.157895
3	37260521	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.105263
3	37260529	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.105263
3	37260538	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.125
3	37262273	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.157895
3	37262377	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0487805
3	37262379	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0697674
3	37262386	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0384615
3	37262647	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.2
3	37265782	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.214286
3	37265783	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.428571
3	37265836	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.15
3	37265838	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.1
3	37265890	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.230769
3	37265906	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.916667
3	37265920	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.166667
3	37273993	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.047619
3	37274003	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0526316
3	37274634	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.111111
3	37274643	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.117647
17	37325659	A->G	-	ENSG00000278540	ACACA	protein_coding	Intergenic	.	.	Alu	0.7
21	37372341	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0289855
21	37372368	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0333333
21	37410922	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.117647
21	37410941	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.25
21	37411102	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.137931
21	37411103	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.103448
21	37411165	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0588235
21	37411233	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.368421
7	37426333	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.166667
21	37426656	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.137931
21	37427130	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.772727
21	37427131	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.652174
21	37427211	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0625
21	37427241	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.25
21	37427245	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.787879
21	37427253	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0625
21	37427257	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0857143
21	37427286	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0714286
21	37427386	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.130435
9	37462806	A->G	-	ENSG00000168795	ZBTB5	protein_coding	Intergenic	.	.	Alu	0.272727
4	37618284	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.1
4	37618437	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.133333
4	37618462	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.0740741
4	37618883	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.025974
4	37618942	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.133333
4	37618952	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.0333333
4	37618976	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.0444444
4	37619017	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.103448
17	37634006	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.230769
17	37634077	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.4
17	37634082	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.0952381
17	37634152	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.15
17	37634460	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.3
17	37634509	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.666667
17	37634515	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.866667
17	37634531	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.142857
4	37673360	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.0357143
4	37673391	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.0491803
4	37681708	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.214286
6	37833610	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.142857
6	37833679	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.173913
6	37833741	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.0740741
6	37833747	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.263158
6	37842940	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.153846
6	37844759	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.25
8	37864970	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.181818
6	37870520	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.0833333
6	37870549	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.125
6	37870581	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.35
6	37870748	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.230769
6	37870753	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.357143
6	37870797	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.214286
8	37888551	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.2
8	37888567	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.181818
8	37888576	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.25
8	37888616	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.2
8	37893142	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.1
8	37893171	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.5
8	37893172	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.357143
8	37893212	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.52381
8	37893213	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.380952
8	37893234	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.1
8	37893269	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.461538
8	37895357	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.129032
6	37971880	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.181818
6	37976383	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.181818
6	37976463	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.214286
6	37976473	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.272727
6	37976504	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.3
10	38022402	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.16
10	38022408	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0869565
10	38022448	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.28
10	38022473	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0909091
10	38022492	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.413793
10	38022495	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.37931
10	38022498	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0882353
10	38022499	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0588235
10	38022501	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.117647
10	38022504	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.117647
10	38022546	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0606061
10	38022550	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.333333
10	38022559	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.137931
10	38022599	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.25
10	38023075	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.166667
10	38023881	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.384615
10	38023887	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.333333
10	38023901	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.166667
10	38023930	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.2
10	38023969	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.142857
10	38024038	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.153846
10	38024080	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0952381
10	38031315	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.181818
10	38031374	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.153846
10	38031427	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.125
10	38031490	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.272727
10	38031495	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.266667
10	38031527	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.125
10	38031552	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.2
8	38137469	A->G	+	ENSG00000129691	ASH2L	protein_coding	Intergenic	.	.	Alu	0.368421
3	38166671	A->G	+	ENSG00000172939	OXSR1	protein_coding	Intergenic	.	.	Alu	0.181818
19	38167112	A->G	+	ENSG00000105738	SIPA1L3	protein_coding	Intergenic	.	.	Alu	0.25
19	38167118	A->G	+	ENSG00000105738	SIPA1L3	protein_coding	Intergenic	.	.	Alu	0.3
8	38180402	A->G	+	ENSG00000156735	BAG4	protein_coding	Intergenic	.	.	Alu	0.272727
8	38180403	A->G	+	ENSG00000156735	BAG4	protein_coding	Intergenic	.	.	Alu	0.181818
8	38187789	A->G	+	ENSG00000156735	BAG4	protein_coding	Intergenic	.	.	Alu	0.136364
8	38219720	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
8	38219751	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
8	38219756	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
8	38219760	A->G	+	.	.	.	Intergenic	.	.	Alu	0.733333
8	38219824	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
8	38219830	A->G	+	.	.	.	Intergenic	.	.	Alu	0.636364
8	38219844	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
8	38239105	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.647059
8	38239118	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.15
8	38239148	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.1
8	38239197	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.0833333
8	38239228	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.133333
8	38239289	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.125
8	38239294	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.0833333
8	38239349	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.125
8	38239430	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.111111
8	38239438	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.0952381
8	38239439	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.0952381
8	38239500	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.0833333
8	38239540	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.222222
8	38239544	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.214286
8	38239922	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.5
8	38239984	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.294118
8	38239985	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.222222
8	38239997	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.15
8	38240006	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.133333
8	38310646	A->G	-	ENSG00000147548	NSD3	protein_coding	Intergenic	.	.	Alu	0.181818
2	38334212	A->G	-	ENSG00000119787	ATL2	protein_coding	Intergenic	.	.	Alu	0.230769
2	38356377	A->G	-	ENSG00000119787	ATL2	protein_coding	Intergenic	.	.	Alu	0.133333
21	38461965	A->G	-	ENSG00000157554	ERG	protein_coding	Intergenic	.	.	Alu	0.0487805
8	38462644	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.5
8	38462718	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.142857
8	38462721	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.176471
8	38462768	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.307692
8	38462978	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.115385
8	38463007	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.25
8	38463013	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.111111
8	38463082	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.166667
6	38466430	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.2
6	38466432	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.2
2	38597852	A->G	-	ENSG00000143889	HNRNPLL	protein_coding	Intergenic	.	.	Alu	0.3
4	38686358	A->G	+	ENSG00000109787	KLF3	protein_coding	Intergenic	.	.	Alu	0.117647
22	38695902	A->G	-	ENSG00000100221	JOSD1	protein_coding	Intergenic	.	.	Alu	0.454545
7	38701619	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
22	38711660	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.416667
22	38711722	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.111111
22	38711723	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.166667
22	38743358	A->G	+	ENSG00000100242	SUN2	protein_coding	Intergenic	.	.	Alu	0.181818
22	38744487	A->G	+	ENSG00000100242	SUN2	protein_coding	Intergenic	.	.	Alu	0.285714
20	38817329	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38817330	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.3
20	38817950	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.263158
20	38817964	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.142857
20	38817972	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38818026	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.214286
8	38818165	A->G	+	ENSG00000147526	TACC1	protein_coding	Intergenic	.	.	Alu	0.1
8	38818191	A->G	+	ENSG00000147526	TACC1	protein_coding	Intergenic	.	.	Alu	0.114286
20	38841263	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0714286
20	38841293	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0555556
20	38841298	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0606061
20	38841310	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0967742
20	38841311	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0645161
20	38841417	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0487805
20	38841434	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0465116
19	38844936	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.147059
19	38844941	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.103448
19	38844946	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.185185
19	38844958	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.111111
19	38844997	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.390244
19	38844999	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.162162
20	38851787	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38851977	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.142857
2	38852712	A->G	-	ENSG00000163214	DHX57	protein_coding	Intergenic	.	.	Alu	0.222222
2	38852713	A->G	-	ENSG00000163214	DHX57	protein_coding	Intergenic	.	.	Alu	0.222222
2	38852726	A->G	-	ENSG00000163214	DHX57	protein_coding	Intergenic	.	.	Alu	0.166667
20	38884800	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.307692
20	38884810	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.533333
20	38884816	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.133333
20	38884950	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.230769
20	38884956	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.285714
20	38885090	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38885104	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.142857
20	38885145	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.130435
19	38897621	A->G	-	ENSG00000068903	SIRT2	protein_coding	Intergenic	.	.	Alu	0.181818
1	38993586	A->G	+	ENSG00000174574	AKIRIN1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	38993710	A->G	+	ENSG00000174574	AKIRIN1	protein_coding	Intergenic	.	.	Alu	0.0833333
1	39030312	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.2
1	39030393	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.142857
1	39044289	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
1	39044299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
2	39046637	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.15
2	39046643	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.190476
2	39046719	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.133333
5	39050451	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intergenic	.	.	Alu	0.111111
3	39058996	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.235294
3	39059025	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.151515
2	39097633	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.133333
2	39097643	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.166667
2	39097655	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	39097701	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	39097702	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0740741
2	39111797	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0952381
2	39111827	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.125
2	39111868	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.434783
2	39111888	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.294118
2	39111900	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0869565
2	39111925	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.214286
2	39111926	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.153846
2	39111948	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.230769
2	39111949	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.142857
2	39113305	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.25
2	39113329	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.125
2	39113413	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.117647
2	39114124	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0540541
2	39114240	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0588235
2	39115491	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0625
2	39115553	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.153846
2	39115563	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0740741
2	39115631	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.1875
2	39115646	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.136364
2	39115664	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.26087
2	39115687	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.111111
2	39115697	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.15
14	39178439	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.4
14	39178818	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.0666667
14	39178837	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.0769231
14	39178838	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.12
14	39178921	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.153846
21	39243566	A->G	-	ENSG00000185658	BRWD1	protein_coding	Intergenic	.	.	Alu	0.142857
17	39250054	A->G	-	ENSG00000265460	AC015910.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.2
17	39250206	A->G	-	ENSG00000265460	AC015910.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
17	39286980	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.384615
17	39291232	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.166667
22	39355969	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.181818
17	39367449	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.181818
17	39367454	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.2
2	39404759	A->G	-	ENSG00000011566	MAP4K3	protein_coding	Intergenic	.	.	Alu	0.133333
2	39421442	A->G	-	ENSG00000011566	MAP4K3	protein_coding	Intergenic	.	.	Alu	0.08
17	39504630	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.272727
17	39504654	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.133333
17	39559917	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.2
17	39559930	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.181818
17	39559932	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.2
17	39559943	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.166667
17	39559963	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.142857
4	39724712	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.454545
4	39725126	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1
4	39725148	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.47619
4	39725152	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.761905
4	39725156	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.44
4	39725172	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39725220	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0769231
4	39725227	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.208333
4	39725230	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39725236	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.125
4	39725256	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.25
4	39725262	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39725276	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.222222
4	39725333	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.272727
4	39725743	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.25
4	39725784	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3
4	39748256	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.4
4	39748524	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0666667
4	39748538	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3
4	39748542	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.192308
4	39759518	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39759942	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3
4	39759947	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39768177	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39768184	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0869565
4	39768255	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.133333
4	39768302	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39768311	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.5
4	39768324	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0645161
4	39768380	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.133333
4	39768396	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0909091
4	39768634	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3
4	39774106	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.384615
4	39774183	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.153846
4	39774193	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39774206	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39774224	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1875
4	39774258	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39774492	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.105263
4	39774559	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0689655
4	39836468	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.142857
4	39872237	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.384615
4	39872253	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.133333
4	39895794	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.153846
4	39895814	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.153846
4	39895856	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.384615
4	39896126	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.3125
4	39896127	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.4375
4	39896166	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.111111
4	39896187	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.2
4	39896207	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.117647
4	39896212	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.15
4	39896269	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.47619
4	39896318	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.4
4	39896521	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.3125
4	39896574	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.588235
4	39896584	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.266667
4	39896595	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.214286
4	39896638	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.6
4	39896654	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.181818
4	39896665	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.166667
4	39914299	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.2
4	39952791	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.2
4	39952801	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.166667
4	39952814	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.214286
4	39952866	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.363636
4	39970891	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.16
4	39970896	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.0909091
4	39970923	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.227273
22	40048284	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.08
22	40048285	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0769231
22	40048337	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.115385
22	40048338	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.230769
22	40048340	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0769231
22	40048394	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.114286
22	40048426	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0555556
22	40048430	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.133333
22	40048437	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.147059
22	40048482	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.107143
22	40048493	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0833333
22	40048864	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.818182
22	40048902	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.454545
22	40054947	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.2
7	40068015	A->G	+	ENSG00000065883	CDK13	protein_coding	Intergenic	.	.	Alu	0.272727
22	40072644	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.130435
22	40072725	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0952381
22	40072757	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0869565
22	40072785	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.15
22	40072814	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.111111
22	40073990	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.266667
22	40074044	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.136364
4	40081790	A->G	+	ENSG00000078177	N4BP2	protein_coding	Intergenic	.	.	Alu	0.2
4	40081805	A->G	+	ENSG00000078177	N4BP2	protein_coding	Intergenic	.	.	Alu	0.272727
4	40082202	A->G	+	ENSG00000078177	N4BP2	protein_coding	Intergenic	.	.	Alu	0.230769
9	40084824	A->G	-	ENSG00000204837	FGF7P3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
9	40085909	A->G	-	ENSG00000204837	FGF7P3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.230769
22	40133804	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.111111
22	40133891	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.08
22	40145135	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.08
22	40145147	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40145148	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.08
22	40145161	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.08
22	40149549	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40149550	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.25
22	40163140	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.153846
22	40163150	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.142857
22	40163159	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.153846
22	40163263	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.111111
22	40163710	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40164267	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.2
22	40164268	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.2
1	40184975	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.25
1	40185121	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.190476
1	40185248	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.25
1	40185257	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.4
1	40185260	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.333333
1	40185270	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.769231
1	40185331	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.636364
1	40185340	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.230769
1	40185902	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.0555556
1	40185923	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.0526316
1	40214789	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.37037
1	40214843	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.136364
1	40215612	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.142857
1	40215650	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.0967742
1	40215655	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.0571429
1	40215660	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.0857143
4	40226307	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.272727
4	40226397	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.105263
4	40229387	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.2
4	40229397	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.5
4	40229435	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.3
4	40229471	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.2
4	40229474	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.125
4	40229477	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.176471
4	40229488	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.130435
4	40229523	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.2
4	40229586	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.384615
4	40235705	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.181818
19	40276462	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.363636
19	40276503	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.538462
19	40276506	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.5
19	40276569	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.272727
22	40550989	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.111111
22	40558020	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.230769
22	40558025	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.142857
15	40597960	A->G	+	ENSG00000137812	KNL1	protein_coding	Intergenic	.	.	Alu	0.181818
15	40598050	A->G	+	ENSG00000137812	KNL1	protein_coding	Intergenic	.	.	Alu	0.2
22	40603811	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.153846
22	40609710	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.105263
22	40609748	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.210526
22	40609749	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.263158
22	40610179	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.0714286
22	40610218	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.111111
22	40610225	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.111111
22	40610251	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.304348
22	40610252	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.173913
22	40610320	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	40611045	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.117647
22	40611117	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.0952381
22	40611118	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.15
22	40615757	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.192308
22	40615782	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.0833333
22	40615813	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.111111
22	40615822	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.130435
22	40615823	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.0869565
22	40615873	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.230769
22	40615888	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.133333
22	40620096	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.2
22	40620218	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.08
22	40620228	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.0740741
22	40620237	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.08
22	40620262	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.0952381
22	40620276	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.125
22	40620306	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	40620327	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	40620328	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
13	40652402	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0625
13	40652416	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0789474
13	40652417	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0588235
13	40655705	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.117647
13	40655910	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.153846
13	40656959	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.153846
13	40657038	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.4
13	40657554	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.111111
13	40657576	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.111111
15	40675840	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
15	40690913	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.363636
15	40690926	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.214286
15	40690927	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.133333
15	40691659	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.125
15	40691663	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.1875
15	40691703	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.272727
1	40707783	A->G	+	ENSG00000066136	NFYC	protein_coding	Intergenic	.	.	Alu	0.357143
1	40707784	A->G	+	ENSG00000066136	NFYC	protein_coding	Intergenic	.	.	Alu	0.214286
15	40741697	A->G	-	ENSG00000137824	RMDN3	protein_coding	Intergenic	.	.	Alu	0.2
15	40741766	A->G	-	ENSG00000137824	RMDN3	protein_coding	Intergenic	.	.	Alu	0.166667
5	40778934	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.181818
5	40778994	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.166667
5	40778995	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.454545
5	40779054	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.363636
15	40986392	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.333333
15	40986401	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.142857
15	40986453	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.238095
15	40986489	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.133333
15	40986543	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.133333
13	40997366	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.1875
13	40997369	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.30303
13	40997422	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0731707
13	40997426	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0612245
13	40997428	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.125
13	40997429	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0425532
13	40997451	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0555556
13	40997485	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0408163
13	40997490	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.06
13	40997625	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.157895
15	41007294	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.2
15	41007320	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.333333
13	41012605	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
13	41012623	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0943396
13	41012664	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.157895
13	41012682	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.1
13	41012757	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.209302
13	41012781	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0526316
15	41037860	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.136364
15	41037910	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.2
15	41037911	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.142857
15	41037912	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.230769
15	41037929	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.15
15	41038080	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.266667
15	41038087	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.176471
15	41038117	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.133333
15	41038152	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.346154
15	41038175	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.181818
15	41038179	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.363636
15	41038211	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.2
15	41038221	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.133333
15	41038296	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.466667
20	41040643	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0405405
20	41040659	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.191781
20	41040685	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0520833
20	41040699	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0537634
20	41040709	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0416667
20	41040718	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0229885
20	41040721	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0322581
20	41040748	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0224719
20	41041214	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.177083
20	41041215	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0208333
20	41041216	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.09375
20	41041248	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0272727
20	41041290	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0465116
20	41041291	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.285714
20	41041297	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0482759
20	41041298	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.027972
20	41041299	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.028777
20	41041303	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0229008
20	41041308	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0406504
20	41041323	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0916667
20	41041356	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0729927
20	41041365	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	1
15	41041386	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.133333
20	41042008	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.117647
20	41042009	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.176471
20	41042013	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.125
20	41042050	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.181818
20	41042054	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.08
20	41042084	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0833333
20	41042162	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0952381
20	41044231	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.117647
13	41052043	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.125
13	41052104	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.1875
13	41057249	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.2
13	41057272	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.181818
13	41057499	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.105263
13	41057504	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
13	41057518	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.125
13	41057618	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.125
20	41086008	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.3
15	41091715	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.307692
15	41091717	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.333333
15	41091782	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.166667
X	41101480	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.153846
X	41101552	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.157895
X	41101554	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.105263
X	41115011	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.181818
X	41115100	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.230769
X	41115133	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.133333
X	41115136	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.125
22	41137168	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.454545
22	41137251	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.238095
22	41137320	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.136364
X	41198923	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.133333
X	41198940	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.166667
X	41199037	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.142857
X	41199073	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.166667
X	41199077	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.416667
1	41234214	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.181818
1	41234613	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.307692
1	41234746	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.3
19	41266180	A->G	+	ENSG00000105323	HNRNPUL1	protein_coding	Intergenic	.	.	Alu	0.0833333
19	41266493	A->G	+	ENSG00000105323	HNRNPUL1	protein_coding	Intergenic	.	.	Alu	0.1875
15	41443812	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.125
15	41443813	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.133333
15	41443818	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.133333
15	41444529	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.133333
22	41520965	A->G	+	ENSG00000100412	ACO2	protein_coding	Intergenic	.	.	Alu	0.214286
20	41609924	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.153846
20	41609933	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.25
20	41609955	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.1
20	41609985	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.125
20	41609989	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.16
20	41609994	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.714286
20	41609995	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.5
20	41610013	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0952381
20	41610021	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0967742
20	41610036	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.357143
20	41610051	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.295455
20	41610052	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0465116
20	41610061	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.08
20	41610075	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0652174
20	41610099	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.533333
20	41610122	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.434783
20	41610128	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.125
20	41610518	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0434783
20	41610541	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0454545
20	41610572	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.857143
20	41610639	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.333333
22	41627488	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.272727
22	41627491	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.333333
22	41655799	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.5
22	41675510	A->G	-	ENSG00000100138	SNU13	protein_coding	Intergenic	.	.	Alu	0.105263
22	41675518	A->G	-	ENSG00000100138	SNU13	protein_coding	Intergenic	.	.	Alu	0.117647
22	41675520	A->G	-	ENSG00000100138	SNU13	protein_coding	Intergenic	.	.	Alu	0.133333
17	41750762	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
17	41762421	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.2
17	41778992	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.5
17	41778993	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.5
17	41779826	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.166667
17	41779908	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.117647
22	41938213	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
4	41940688	A->G	+	ENSG00000109133	TMEM33	protein_coding	Intergenic	.	.	Alu	0.153846
17	41957816	A->G	-	ENSG00000204815	TTC25	protein_coding	Intergenic	.	.	Alu	0.153846
4	41992191	A->G	+	ENSG00000014824	SLC30A9	protein_coding	Intergenic	.	.	Alu	0.2
8	41995902	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.214286
17	42004052	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.181818
17	42004058	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.1875
17	42004093	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.0714286
17	42004149	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.0909091
17	42004156	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.0487805
17	42004158	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.075
17	42004159	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.0487805
17	42007723	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.272727
8	42013506	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.0512821
3	42018194	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.08
3	42019018	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.296296
3	42019028	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.08
3	42019071	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.173913
3	42019072	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	1
3	42022513	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.3
3	42022619	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.2
3	42022642	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.153846
8	42044193	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.181818
15	42170811	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.272727
15	42170817	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.272727
15	42170834	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.416667
15	42170937	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.636364
15	42170942	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.2
15	42238633	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.333333
15	42243657	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.153846
15	42243684	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.2
1	42295666	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.0714286
1	42301288	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.210526
1	42301301	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.157895
1	42301333	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.647059
1	42301389	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.210526
1	42301394	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.473684
1	42301405	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.105263
1	42301429	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.333333
1	42301440	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.307692
1	42301467	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.266667
1	42301469	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.2
1	42301489	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.266667
1	42310585	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.105263
1	42328763	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.363636
1	42328866	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.25
12	42359932	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.307692
12	42359997	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.8
8	42363325	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.272727
8	42363374	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.235294
8	42363381	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.142857
8	42363407	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.125
8	42363443	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.133333
17	42370704	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.166667
17	42370846	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.363636
12	42400595	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.142857
8	42531891	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.125
8	42531895	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0555556
8	42531915	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.121951
8	42531916	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0487805
8	42531924	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0869565
8	42531930	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.162791
8	42531957	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.344828
8	42532022	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.157895
8	42532024	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.111111
8	42532030	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.1
8	42532032	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.375
8	42532033	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.2
8	42532045	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.421053
8	42532122	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0869565
8	42533341	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.166667
8	42533371	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.333333
8	42533372	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.142857
8	42533433	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.153846
8	42533450	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.6
8	42533472	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.103448
8	42533488	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.185185
8	42533494	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0740741
8	42533530	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.612903
8	42533533	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.548387
8	42533534	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.193548
8	42533553	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.1
8	42533581	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.189189
8	42533582	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.102564
8	42533722	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.181818
8	42533756	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.333333
8	42533766	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0769231
8	42533784	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.5625
8	42533797	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.277778
8	42533823	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.4
8	42533827	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.108108
8	42533829	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0526316
8	42533832	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.235294
8	42533838	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.133333
8	42533841	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0689655
8	42533859	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	1
8	42533887	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.461538
8	42534071	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.107143
8	42534072	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.09375
8	42534082	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.225806
8	42534091	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0740741
8	42534095	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.1
8	42534105	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.333333
8	42534132	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.416667
8	42534134	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.2
8	42534137	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0869565
8	42534144	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.315789
8	42534151	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.571429
8	42534192	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.117647
8	42534196	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.222222
8	42534197	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.166667
8	42534203	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.210526
8	42534295	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.166667
15	42549564	A->G	+	ENSG00000137814	HAUS2	protein_coding	Intergenic	.	.	Alu	0.2
22	42598015	A->G	-	ENSG00000100227	POLDIP3	protein_coding	Intergenic	.	.	Alu	0.117647
22	42598221	A->G	-	ENSG00000100227	POLDIP3	protein_coding	Intergenic	.	.	Alu	0.142857
22	42598316	A->G	-	ENSG00000100227	POLDIP3	protein_coding	Intergenic	.	.	Alu	0.166667
22	42598327	A->G	-	ENSG00000100227	POLDIP3	protein_coding	Intergenic	.	.	Alu	0.153846
1	42668954	A->G	+	ENSG00000171960	PPIH	protein_coding	Intergenic	.	.	Alu	0.75
1	42668955	A->G	+	ENSG00000171960	PPIH	protein_coding	Intergenic	.	.	Alu	0.583333
1	42668960	A->G	+	ENSG00000171960	PPIH	protein_coding	Intergenic	.	.	Alu	0.230769
1	42668963	A->G	+	ENSG00000171960	PPIH	protein_coding	Intergenic	.	.	Alu	0.181818
1	42669135	A->G	+	ENSG00000171960	PPIH	protein_coding	Intergenic	.	.	Alu	0.166667
1	42669159	A->G	+	ENSG00000171960	PPIH	protein_coding	Intergenic	.	.	Alu	0.133333
6	42685150	A->G	+	ENSG00000024048	UBR2	protein_coding	Intergenic	.	.	Alu	0.272727
6	42685151	A->G	+	ENSG00000024048	UBR2	protein_coding	Intergenic	.	.	Alu	0.181818
1	42699715	A->G	+	ENSG00000065978	YBX1	protein_coding	Intergenic	.	.	Alu	0.117647
6	42785441	A->G	+	ENSG00000112624	BICRAL	protein_coding	Intergenic	.	.	Alu	0.2
22	42804184	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.125
10	42806615	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.166667
10	42806655	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.181818
21	42832241	A->G	-	ENSG00000225218	AP001628.1	lincRNA	Intergenic	.	.	Alu	0.2
21	42832252	A->G	-	ENSG00000225218	AP001628.1	lincRNA	Intergenic	.	.	Alu	0.2
22	42835721	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.2
22	42836054	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.375
22	42836121	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.785714
22	42836222	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.133333
22	42836248	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.181818
21	42843483	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.428571
21	42843484	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.357143
21	42843526	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.181818
21	42843532	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.125
21	42843831	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.2
21	42843840	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.272727
6	42943175	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.214286
6	42943193	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.166667
6	42943240	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.176471
6	42952434	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
6	42977310	A->G	-	ENSG00000124587	PEX6	protein_coding	Intergenic	.	.	Alu	0.133333
6	42977315	A->G	-	ENSG00000124587	PEX6	protein_coding	Intergenic	.	.	Alu	0.6
6	42977390	A->G	-	ENSG00000124587	PEX6	protein_coding	Intergenic	.	.	Alu	0.272727
6	42977391	A->G	-	ENSG00000124587	PEX6	protein_coding	Intergenic	.	.	Alu	0.166667
22	42987896	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.181818
22	43010007	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.666667
22	43010008	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.133333
22	43010010	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.266667
22	43010149	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.0909091
13	43024940	A->G	+	ENSG00000120675	DNAJC15	protein_coding	Intergenic	.	.	Alu	0.230769
13	43024999	A->G	+	ENSG00000120675	DNAJC15	protein_coding	Intergenic	.	.	Alu	0.117647
13	43025009	A->G	+	ENSG00000120675	DNAJC15	protein_coding	Intergenic	.	.	Alu	0.166667
6	43029674	A->G	+	ENSG00000124541	RRP36	protein_coding	Intergenic	.	.	Alu	0.9
8	43057883	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.0425532
5	43070028	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
8	43070029	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.117647
8	43070044	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.25
8	43070092	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	1
8	43070093	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.285714
5	43076861	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.105263
5	43128393	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0645161
5	43128402	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0588235
5	43128470	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0666667
5	43128472	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.133333
5	43128477	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.103448
5	43128478	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.107143
5	43128775	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.458333
5	43128851	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.107143
5	43128883	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.105263
5	43128998	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.176471
5	43129074	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.363636
5	43129098	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43129101	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.153846
5	43129136	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.181818
5	43129188	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.285714
5	43129197	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
5	43129198	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.363636
5	43129216	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.230769
5	43129340	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.25
5	43129706	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0909091
5	43129794	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
5	43129796	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.117647
5	43129820	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.176471
5	43129858	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.461538
5	43130051	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43130056	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.384615
5	43130090	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.117647
5	43130112	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.153846
5	43130117	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.142857
5	43130125	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
5	43130143	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.333333
5	43130149	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.153846
5	43130184	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.333333
5	43130185	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
10	43139967	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.25
10	43140127	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.0869565
10	43141477	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.117647
5	43153544	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.153846
5	43153548	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.384615
5	43153563	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.214286
5	43153586	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.538462
5	43153587	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.461538
5	43153591	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.230769
5	43153631	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.307692
2	43171708	A->G	-	.	.	.	Intergenic	.	.	Alu	0.263158
2	43171709	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
2	43171739	A->G	-	.	.	.	Intergenic	.	.	Alu	0.235294
11	43390398	A->G	+	ENSG00000254577	AC087276.1	sense_overlapping	Intergenic	.	.	Alu	0.0363636
15	43419667	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.454545
15	43442714	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.2
20	43466953	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
20	43467114	A->G	+	.	.	.	Intergenic	.	.	Alu	0.727273
11	43473713	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.181818
11	43473763	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.142857
11	43473790	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.1
11	43473799	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.0833333
11	43489634	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.25
20	43518978	A->G	+	ENSG00000185513	L3MBTL1	protein_coding	Intergenic	.	.	Alu	0.133333
1	43661104	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.75
1	43661353	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.636364
1	43661354	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.25
1	43661359	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.6
1	43661431	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.166667
1	43661472	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.35
1	43661485	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.5
1	43661491	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.26087
1	43661495	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.24
1	43661541	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.4
15	43754203	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.0625
15	43754241	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.037037
15	43754479	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.0540541
15	43754874	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.0526316
15	43760231	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.0571429
15	43760248	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.148148
15	43760270	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	1
15	43760284	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.5
15	43760346	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	1
15	43761051	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.2
15	43844500	A->G	+	ENSG00000092470	WDR76	protein_coding	Intergenic	.	.	Alu	0.2
15	43846808	A->G	+	ENSG00000092470	WDR76	protein_coding	Intergenic	.	.	Alu	0.181818
2	43991226	A->G	-	ENSG00000138095	LRPPRC	protein_coding	Intergenic	.	.	Alu	0.454545
2	43991227	A->G	-	ENSG00000138095	LRPPRC	protein_coding	Intergenic	.	.	Alu	0.181818
17	44033511	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
17	44033515	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
17	44033529	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
2	44198238	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44198290	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.285714
2	44198300	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44198423	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.142857
2	44199075	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.230769
2	44199111	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.26087
2	44199137	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.151515
2	44199138	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.212121
2	44199147	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0606061
2	44209697	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44222898	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.181818
2	44223106	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.272727
2	44223554	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.482759
2	44223581	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0909091
2	44223624	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.1875
2	44223630	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.153846
2	44223631	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.692308
2	44223632	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.714286
2	44223669	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.114286
2	44223673	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.222222
2	44223695	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.46
2	44223722	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0571429
2	44223737	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.304348
2	44223766	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.347826
11	44237985	A->G	+	ENSG00000151348	EXT2	protein_coding	Intergenic	.	.	Alu	0.2
15	44433060	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.2
15	44433061	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.3
15	44433240	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.454545
1	44434637	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44434649	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44434893	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.363636
1	44434896	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.230769
1	44434898	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.214286
1	44434900	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.133333
1	44434960	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.222222
1	44434961	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.111111
1	44434969	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.266667
1	44435871	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.181818
17	44445598	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.166667
17	44445631	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.176471
17	44445700	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.181818
17	44445737	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.105263
17	44445738	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.157895
17	44446402	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44446418	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.153846
17	44446465	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.153846
17	44446502	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44447743	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.133333
1	44451104	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.176471
1	44463215	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.181818
1	44463270	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44475502	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.142857
1	44475803	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44475810	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.1
1	44475811	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.157895
1	44475891	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0869565
1	44475927	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.222222
1	44475932	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.105263
1	44475933	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.105263
1	44475975	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0869565
1	44480370	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.133333
1	44481346	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
17	44488315	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44493262	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.153846
1	44493952	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44493965	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.454545
1	44493997	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.285714
1	44494017	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.111111
1	44494031	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.357143
1	44494036	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.5625
1	44494045	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.117647
1	44494086	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.105263
1	44503127	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.111111
1	44503214	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.230769
1	44503246	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44503249	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.533333
1	44503255	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.454545
1	44503316	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.153846
1	44503322	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.416667
15	44505675	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.3
20	44515174	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.363636
20	44515759	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.166667
20	44515765	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.285714
20	44515766	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.230769
20	44515767	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.461538
20	44515789	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.363636
20	44515851	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.133333
20	44515852	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.4
20	44515883	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.285714
20	44515888	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.214286
20	44516422	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.117647
20	44516465	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.125
20	44516485	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.666667
20	44516505	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.2
20	44516527	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.368421
20	44516528	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.235294
20	44516563	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.148148
20	44516568	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.0689655
20	44516608	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.0909091
20	44516615	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.111111
20	44516619	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.105263
15	44521615	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.142857
15	44521675	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.105263
15	44522073	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.285714
15	44522092	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.242424
15	44522113	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0425532
15	44522151	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0833333
15	44522167	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.5
15	44522208	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0588235
15	44522268	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0909091
15	44522269	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.136364
15	44522270	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.136364
15	44522286	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.428571
15	44522297	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.190476
15	44522308	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.107143
15	44522497	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.363636
15	44522498	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.181818
1	44527805	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.333333
1	44527811	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.222222
1	44527815	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.470588
1	44527871	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.125
1	44527883	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.866667
1	44529391	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.909091
1	44529468	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.272727
1	44529573	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.3
1	44529817	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.272727
1	44529836	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.4
15	44549620	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.347826
15	44549646	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.0588235
15	44549647	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.294118
15	44549673	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	1
15	44549687	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.2
15	44549880	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.125
7	44576832	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
7	44576838	A->G	-	.	.	.	Intergenic	.	.	Alu	0.8
7	44576940	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	44576975	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
7	44576976	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
7	44576996	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
7	44577006	A->G	-	.	.	.	Intergenic	.	.	Alu	0.588235
7	44577058	A->G	-	.	.	.	Intergenic	.	.	Alu	0.727273
7	44577059	A->G	-	.	.	.	Intergenic	.	.	Alu	0.727273
7	44577119	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
15	44601634	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.6
15	44601640	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.2
15	44601650	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.307692
15	44601729	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.166667
15	44601735	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.9
15	44601809	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.3
1	44627092	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0363636
1	44627097	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0344828
1	44627230	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0625
7	44803440	A->G	-	ENSG00000196262	PPIA	protein_coding	Intergenic	.	.	Alu	0.818182
7	44803454	A->G	-	ENSG00000196262	PPIA	protein_coding	Intergenic	.	.	Alu	0.166667
7	44807542	A->G	-	ENSG00000196262	PPIA	protein_coding	Intergenic	.	.	Alu	0.272727
21	44812181	A->G	-	ENSG00000184900	SUMO3	protein_coding	Intergenic	.	.	Alu	0.272727
7	44832701	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.473684
7	44832820	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.181818
7	44832822	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.4
7	44832838	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.166667
7	44832867	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.153846
7	44832874	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.615385
7	44832881	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.375
7	44832888	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.2
7	44832903	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.153846
7	44832906	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.384615
7	44832912	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.181818
7	44833115	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.166667
7	44833145	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.125
7	44833223	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0833333
7	44833228	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.277778
7	44833330	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.2
7	44833371	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.8
7	44834819	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0309278
7	44834875	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.03
7	44834907	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0238095
7	44834915	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.025641
7	44834921	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.202899
7	44836028	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.666667
7	44836085	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0909091
7	44836095	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.04
7	44836123	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.047619
7	44836124	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0512821
7	44836213	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0606061
7	44836236	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.111111
7	44838063	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.130435
7	44838082	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.576923
7	44838099	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0666667
7	44838406	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.153846
7	44838558	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.166667
7	44838567	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.272727
22	44852117	A->G	+	ENSG00000248405	PRR5-ARHGAP8	protein_coding	Intergenic	.	.	Alu	0.4
17	44860633	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.272727
17	44866886	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.363636
17	44866899	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.25
17	44866911	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.166667
17	44866921	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.166667
17	44867007	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.2
17	44867392	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.0689655
17	44867411	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.0645161
17	44867415	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.0689655
17	44867416	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.357143
17	44867468	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.1
17	44867470	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.25
17	44867482	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.0540541
17	44867508	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.52
17	44867532	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.238095
X	44880052	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0882353
X	44883260	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.181818
X	44883280	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.166667
X	44883323	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.2
X	44883609	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0857143
X	44883853	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0487805
X	44883888	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.433333
X	44883913	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0526316
X	44883917	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.117647
X	44883926	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0606061
X	44883932	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.138889
X	44883952	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.105263
X	44883955	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.235294
X	44883982	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.125
X	44884047	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.08
X	44884062	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0909091
X	44892819	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.235294
X	44892838	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.176471
X	44892841	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.1
X	44892847	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.111111
X	44892856	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.210526
X	44892892	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0666667
X	44893053	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0408163
X	44893060	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0350877
X	44893064	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.147541
X	44893081	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0263158
X	44893096	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0327869
X	44893104	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0508475
X	44893107	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.155172
X	44893109	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0714286
X	44893118	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0357143
X	44893138	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.122807
X	44964241	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.1
X	44964328	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.133333
14	44984641	A->G	+	ENSG00000198718	TOGARAM1	protein_coding	Intergenic	.	.	Alu	0.2
19	45006305	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.105263
19	45006385	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.133333
19	45006390	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.307692
19	45007976	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.181818
X	45010255	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.130435
X	45010260	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.08
X	45010263	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0769231
19	45012593	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.153846
19	45012594	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.153846
19	45012621	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.117647
19	45013781	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.2
19	45015588	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.2
14	45037772	A->G	+	ENSG00000198718	TOGARAM1	protein_coding	Intergenic	.	.	Alu	0.8
19	45065259	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.16
19	45065269	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.0967742
19	45065284	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.0769231
19	45065506	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.0769231
19	45066182	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.166667
19	45066582	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.125
19	45066609	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.333333
14	45092348	A->G	+	ENSG00000185246	PRPF39	protein_coding	Intergenic	.	.	Alu	0.2
14	45092522	A->G	+	ENSG00000185246	PRPF39	protein_coding	Intergenic	.	.	Alu	0.230769
17	45158774	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.166667
17	45158779	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.181818
13	45197415	A->G	+	ENSG00000188342	GTF2F2	protein_coding	Intergenic	.	.	Alu	0.2
14	45208422	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.0869565
14	45208454	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.105263
14	45208533	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.125
14	45208604	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.1
14	45208605	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.117647
14	45209453	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.214286
14	45209527	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.142857
14	45209531	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.142857
14	45209535	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.133333
17	45217665	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.4
17	45217700	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.4
17	45217805	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.363636
17	45217836	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.3
17	45218004	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.333333
17	45218005	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.5
17	45218020	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.2
17	45218028	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.2
17	45218205	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.1875
17	45218235	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.157895
12	45250612	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.25
12	45250950	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.125
12	45250993	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.333333
17	45506007	A->G	-	.	.	.	Intergenic	.	.	Alu	0.818182
17	45506626	A->G	-	.	.	.	Intergenic	.	.	Alu	0.075
17	45506631	A->G	-	.	.	.	Intergenic	.	.	Alu	0.162791
17	45506636	A->G	-	.	.	.	Intergenic	.	.	Alu	0.177778
17	45506642	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0465116
17	45506660	A->G	-	.	.	.	Intergenic	.	.	Alu	0.119048
17	45506684	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0512821
17	45506702	A->G	-	.	.	.	Intergenic	.	.	Alu	0.424242
17	45506728	A->G	-	.	.	.	Intergenic	.	.	Alu	0.217391
17	45566333	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
1	45646718	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	45653316	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.35
1	45653331	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.307692
1	45653917	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.136364
1	45653918	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.227273
1	45653954	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.55
1	45653966	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	45656742	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.125
1	45656781	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.272727
1	45656782	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.538462
1	45656794	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.285714
1	45656884	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.157895
1	45656885	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.157895
1	45656944	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.176471
1	45671295	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	45671330	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.529412
1	45671347	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.117647
1	45671423	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
1	45671428	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.411765
1	45671429	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.5
1	45671478	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.375
1	45671479	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.4375
1	45671486	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.533333
1	45671562	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.3
1	45671616	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.45
1	45671633	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.125
1	45671689	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.166667
1	45680281	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.153846
1	45680306	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.185185
1	45680341	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.103448
1	45683291	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.266667
1	45683338	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.142857
21	45684107	A->G	+	ENSG00000183570	PCBP3	protein_coding	Intergenic	.	.	Alu	0.166667
12	45801218	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.4
12	45899151	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.294118
12	45899161	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.2
12	45899165	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.222222
12	45899178	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.125
12	45899221	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.166667
12	45899227	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.142857
12	45899229	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.133333
12	45899343	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.3
12	45899350	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.2
12	45901801	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.2
12	45936175	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.333333
12	45936176	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.230769
12	45936250	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.3
12	45954632	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0416667
12	45954654	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0517241
12	45954662	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0740741
12	45954685	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0952381
12	45957971	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0689655
12	45958021	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.05
20	45966451	A->G	-	ENSG00000198026	ZNF335	protein_coding	Intergenic	.	.	Alu	0.125
20	45966463	A->G	-	ENSG00000198026	ZNF335	protein_coding	Intergenic	.	.	Alu	0.142857
20	45966486	A->G	-	ENSG00000198026	ZNF335	protein_coding	Intergenic	.	.	Alu	0.166667
20	45966524	A->G	-	ENSG00000198026	ZNF335	protein_coding	Intergenic	.	.	Alu	0.181818
10	45993418	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.25
10	45993434	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.181818
10	45994130	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.214286
10	45994169	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.263158
10	45994175	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.117647
10	45994179	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.0952381
10	45994219	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.117647
10	45994245	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.1875
17	46077669	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.266667
17	46077740	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.117647
17	46077759	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.133333
17	46148672	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.181818
17	46184951	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.133333
18	46221439	A->G	+	ENSG00000152242	C18orf25	protein_coding	Intergenic	.	.	Alu	0.0666667
1	46305243	A->G	+	ENSG00000173660	UQCRH	protein_coding	Intergenic	.	.	Alu	0.166667
21	46461051	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.4
21	46461177	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.727273
21	46461187	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.363636
11	46478942	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.1
11	46478948	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.111111
11	46479007	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.153846
11	46479027	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.4
13	46558661	A->G	+	ENSG00000136141	LRCH1	protein_coding	Intergenic	.	.	Alu	0.0526316
16	46608666	A->G	-	ENSG00000171241	SHCBP1	protein_coding	Intergenic	.	.	Alu	0.3
16	46608672	A->G	-	ENSG00000171241	SHCBP1	protein_coding	Intergenic	.	.	Alu	0.272727
11	46625086	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.4
11	46625094	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.133333
11	46627527	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.272727
11	46627571	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.3
11	46627979	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.142857
11	46628317	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.2
11	46648697	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.25
X	46655217	A->G	-	ENSG00000065923	SLC9A7	protein_coding	Intergenic	.	.	Alu	0.2
X	46655227	A->G	-	ENSG00000065923	SLC9A7	protein_coding	Intergenic	.	.	Alu	0.3
11	46683137	A->G	-	ENSG00000175220	ARHGAP1	protein_coding	Intergenic	.	.	Alu	0.117647
19	46708462	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.25
19	46708464	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.2
19	46708478	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.333333
19	46708492	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.0952381
19	46708533	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.173913
19	46709117	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46709125	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46709202	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.125
19	46709245	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.15
19	46709246	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.111111
2	46733453	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.333333
2	46733470	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.111111
2	46733498	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.157895
10	46805174	A->G	+	ENSG00000204177	BMS1P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
10	46813985	A->G	+	.	.	.	Intergenic	.	.	Alu	0.583333
11	46831953	A->G	-	ENSG00000175216	CKAP5	protein_coding	Intergenic	.	.	Alu	0.181818
18	46847620	A->G	-	ENSG00000078043	PIAS2	protein_coding	Intergenic	.	.	Alu	0.2
22	46960691	A->G	+	ENSG00000054611	TBC1D22A	protein_coding	Intergenic	.	.	Alu	0.8
22	46960692	A->G	+	ENSG00000054611	TBC1D22A	protein_coding	Intergenic	.	.	Alu	1
2	46961794	A->G	+	ENSG00000068724	TTC7A	protein_coding	Intergenic	.	.	Alu	0.0769231
11	46974734	A->G	+	ENSG00000149179	C11orf49	protein_coding	Intergenic	.	.	Alu	0.2
3	46975333	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.08
3	46975412	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.142857
3	46975451	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.15
3	46975659	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.1
3	47033783	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.3
11	47053859	A->G	+	ENSG00000149179	C11orf49	protein_coding	Intergenic	.	.	Alu	0.583333
11	47053900	A->G	+	ENSG00000149179	C11orf49	protein_coding	Intergenic	.	.	Alu	0.4
3	47059296	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.166667
3	47131875	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.357143
3	47132247	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.5
3	47132257	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.176471
3	47132277	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.642857
3	47132359	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.5
3	47132375	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.2
3	47132378	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.1
3	47132404	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.1
3	47132468	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.533333
3	47137824	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.153846
X	47155102	A->G	+	ENSG00000182872	RBM10	protein_coding	Intergenic	.	.	Alu	0.2
17	47160365	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0555556
17	47160366	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.121212
3	47160429	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.5
17	47160443	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0909091
17	47160475	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.166667
17	47160507	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.153846
17	47161628	A->G	-	ENSG00000262265	AC002558.3	sense_intronic	Intergenic	.	.	Alu	0.25
17	47169064	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0869565
17	47169106	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0869565
17	47169115	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0689655
17	47169129	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.190476
17	47169139	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.142857
17	47169173	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.181818
19	47179071	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.2
19	47179645	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.214286
19	47179742	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.5
20	47288595	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.272727
20	47288625	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.0833333
20	47288630	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.296296
20	47288660	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.342105
20	47288662	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.210526
20	47288665	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.107143
20	47288857	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.16
20	47288858	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.0769231
20	47288872	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.0909091
16	47296155	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.105263
1	47299235	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.2
16	47301668	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.230769
16	47301669	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.153846
7	47364420	A->G	-	ENSG00000136205	TNS3	protein_coding	Intergenic	.	.	Alu	0.166667
11	47367882	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.384615
11	47367896	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47367960	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.533333
11	47367981	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	1
11	47367982	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.272727
11	47368253	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.777778
11	47368256	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.117647
11	47368343	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.2
11	47480791	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0769231
11	47480817	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.269231
11	47480818	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.384615
11	47480879	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.178571
11	47480887	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.521739
11	47480924	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.266667
11	47480957	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47480967	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.111111
11	47480969	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47481147	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.384615
11	47481172	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.347826
11	47481177	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.16
11	47481179	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0833333
11	47481248	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0810811
11	47481265	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.148148
11	47481266	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0740741
11	47481292	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.206897
11	47481300	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.111111
11	47481323	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.275
11	47481324	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.047619
11	47481334	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0681818
11	47481362	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.37037
11	47481403	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0833333
11	47481411	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.333333
X	47484854	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
20	47510178	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.111111
20	47510266	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.0714286
20	47510281	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.08
20	47510313	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.35
20	47510732	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47510740	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
11	47512249	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
20	47512404	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47512421	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.166667
20	47512439	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.142857
20	47512447	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.294118
20	47513547	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47513548	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
11	47513588	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.133333
11	47513598	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0769231
11	47514096	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.266667
11	47514097	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.2
20	47519233	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.3
20	47519249	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.2
20	47519273	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.1875
20	47519311	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.125
20	47519819	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.4
20	47519827	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.25
20	47519891	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.230769
20	47520014	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.176471
20	47520022	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.125
20	47520036	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.166667
20	47520045	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.142857
20	47532884	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.2
20	47532889	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.2
20	47532985	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
11	47534121	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47534125	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47534166	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
11	47534177	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47534200	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47534203	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47534596	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47534606	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.227273
11	47537340	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.3
11	47537386	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.4
11	47537388	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.5
11	47537993	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47538006	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47538054	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.666667
11	47538172	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.5
11	47542153	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47542552	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.230769
11	47542560	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.464286
11	47542569	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.1
11	47542590	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47542595	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0833333
11	47542630	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.342857
11	47542635	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.162162
11	47542656	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
11	47542662	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.115385
11	47542668	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
11	47542692	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0526316
11	47542693	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0526316
11	47542722	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0555556
11	47542748	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.111111
11	47542749	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.115385
11	47542770	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
11	47542771	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.136364
11	47542779	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.214286
11	47542876	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.1
11	47542916	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47542996	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
17	47596032	A->G	+	ENSG00000141279	NPEPPS	protein_coding	Intergenic	.	.	Alu	0.148148
3	47604900	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.181818
3	47604924	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
11	47614706	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
11	47616494	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
11	47616513	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
11	47616907	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
11	47616916	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
3	47672864	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.363636
3	47708273	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.111111
3	47708279	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.315789
3	47708320	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.181818
3	47722426	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.0882353
3	47722430	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.0645161
3	47722435	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.137931
3	47722498	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.166667
3	47722499	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.176471
3	47726965	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.266667
3	47726966	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.1875
3	47727997	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.4375
3	47728042	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.166667
3	47728155	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.133333
3	47728183	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47728289	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.333333
3	47728290	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.21875
3	47728291	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	47728360	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.08
3	47728743	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47728758	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.272727
3	47728761	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.333333
8	47741112	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
8	47741150	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
11	47765942	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.142857
11	47765967	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.125
3	47780232	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	47780268	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.105263
3	47780309	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.233333
8	47785943	A->G	-	ENSG00000253729	PRKDC	protein_coding	Intergenic	.	.	Alu	0.2
2	47793505	A->G	+	ENSG00000116062	MSH6	protein_coding	Intergenic	.	.	Alu	0.2
2	47793535	A->G	+	ENSG00000116062	MSH6	protein_coding	Intergenic	.	.	Alu	0.214286
11	47824743	A->G	-	ENSG00000030066	NUP160	protein_coding	Intergenic	.	.	Alu	0.6
2	47825669	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.133333
3	47828278	A->G	+	ENSG00000132153	DHX30	protein_coding	Intergenic	.	.	Alu	0.636364
2	47860653	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.166667
2	47874807	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.294118
2	47874808	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.111111
2	47877696	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.642857
2	47878425	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.102041
2	47878434	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.212121
2	47878468	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0769231
2	47878485	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0930233
2	47878489	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.315789
2	47878521	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0689655
2	47878527	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.194444
2	47878530	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.16129
2	47878532	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.466667
2	47878533	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.275862
2	47878539	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.653846
2	47878550	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0606061
2	47878569	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0930233
2	47878576	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.297872
2	47878584	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0444444
2	47878629	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.166667
2	47878634	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.1
2	47878635	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.075
2	47878641	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.102564
2	47878651	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.153846
2	47878732	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.3
2	47878733	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.235294
2	47878786	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0909091
2	47878798	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0789474
2	47878815	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.5
2	47878824	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.142857
2	47878832	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0789474
2	47878838	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.3
2	47878855	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.05
2	47878857	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0327869
2	47878879	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.163265
2	47878896	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.145455
2	47878897	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0545455
2	47878919	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.333333
2	47878927	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.102041
2	47878941	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0408163
18	47892292	A->G	-	ENSG00000175387	SMAD2	protein_coding	Intergenic	.	.	Alu	0.307692
2	47896408	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0512821
2	47896468	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0666667
2	47896476	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0833333
13	47937171	A->G	-	ENSG00000136143	SUCLA2	protein_coding	Intergenic	.	.	Alu	0.166667
13	47937172	A->G	-	ENSG00000136143	SUCLA2	protein_coding	Intergenic	.	.	Alu	0.166667
3	48066965	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.117647
3	48070098	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.363636
3	48070112	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.181818
3	48070301	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.3125
3	48070302	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.25
3	48070308	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.133333
4	48141748	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.1875
4	48141785	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.631579
4	48141804	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0571429
4	48141811	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.2
4	48141820	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.7
4	48141821	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.137931
4	48141878	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.357143
4	48141886	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.5
4	48141920	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0740741
4	48141926	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.111111
4	48142352	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.6
4	48142387	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.714286
4	48142426	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.2
4	48142435	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.818182
4	48142451	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.166667
10	48356584	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.3
10	48356586	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.235294
10	48356695	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.3
10	48356824	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.363636
10	48356826	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.181818
16	48367101	A->G	-	ENSG00000196470	SIAH1	protein_coding	Intergenic	.	.	Alu	0.181818
16	48377821	A->G	-	ENSG00000196470	SIAH1	protein_coding	Intergenic	.	.	Alu	0.166667
10	48380043	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.0952381
19	48458549	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.526316
19	48458590	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.125
19	48459121	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.416667
19	48461109	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.181818
19	48461133	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.181818
12	48664026	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0769231
12	48664052	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.102041
12	48664093	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0588235
12	48664097	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0571429
12	48664447	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.111111
12	48664483	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0869565
12	48664777	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.05
12	48664778	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0697674
12	48664787	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.365854
12	48664788	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.195122
12	48664803	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0625
3	48697118	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0833333
3	48697159	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.157895
3	48697291	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0392157
3	48697363	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.224138
3	48697364	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0847458
3	48697423	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.20339
3	48697426	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.152542
3	48697431	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.136364
3	48697447	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0289855
3	48697454	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0289855
3	48697560	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.153846
3	48697592	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.121212
3	48697614	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.130435
3	48697622	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.105263
3	48697627	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.5
3	48697817	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.117647
3	48702546	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.5
3	48702568	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	48702582	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.285714
3	48702604	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.380952
3	48702608	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.454545
17	48833468	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.166667
17	48858898	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.181818
17	48858925	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.2
17	48866988	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
17	48866989	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
17	48867176	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
17	48867247	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
17	48867276	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
17	48867298	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
17	48867299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
17	48867336	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
17	48867365	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
17	48867413	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
17	48867453	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
17	48867598	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
4	48903810	A->G	-	ENSG00000145247	OCIAD2	protein_coding	Intergenic	.	.	Alu	0.454545
3	48931442	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.2
3	48931499	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.111111
13	48990641	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.36
13	48990663	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.0909091
13	48990682	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.181818
13	48990687	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.117647
13	48991432	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.111111
13	48991522	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.272727
13	48991608	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.25
13	48991609	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.25
X	48994223	A->G	-	ENSG00000068400	GRIPAP1	protein_coding	Intergenic	.	.	Alu	0.642857
X	48994290	A->G	-	ENSG00000068400	GRIPAP1	protein_coding	Intergenic	.	.	Alu	0.0909091
X	48994352	A->G	-	ENSG00000068400	GRIPAP1	protein_coding	Intergenic	.	.	Alu	0.125
3	49010157	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.2
3	49010461	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.181818
3	49010483	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.3
15	49034858	A->G	-	ENSG00000138593	SECISBP2L	protein_coding	Intergenic	.	.	Alu	0.214286
15	49034889	A->G	-	ENSG00000138593	SECISBP2L	protein_coding	Intergenic	.	.	Alu	0.6
3	49063677	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
3	49064031	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49064203	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.176471
3	49064204	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.111111
3	49064206	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.315789
3	49064351	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.333333
3	49064446	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.214286
3	49070126	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.117647
20	49070829	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.4
20	49071527	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.2
20	49071548	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.230769
20	49071563	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.153846
20	49071847	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.162162
20	49071853	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.0952381
20	49071864	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.0526316
20	49071874	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.305556
20	49072018	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.166667
20	49072040	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.103448
3	49078567	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.153846
3	49078788	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.130435
3	49078794	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
3	49079149	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
3	49088080	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49088084	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49088148	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49088421	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.133333
3	49088434	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.235294
3	49088460	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.08
3	49088513	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.117647
3	49088583	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.130435
3	49088584	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.12
3	49088819	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	49089107	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.111111
3	49089197	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	49089255	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	49089263	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	49089287	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.133333
3	49089292	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
20	49137804	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.2
20	49163488	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.115385
20	49163493	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.0869565
20	49163498	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.28
20	49163499	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.4
20	49163522	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.222222
20	49163554	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.0869565
20	49163603	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.157895
3	49310127	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.166667
3	49321545	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.142857
3	49321552	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.1875
3	49321596	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.15
3	49321605	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.176471
3	49321606	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.666667
3	49321632	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	1
3	49321657	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.5
3	49321662	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.125
17	49336723	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.333333
17	49336751	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.2
17	49336797	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.125
17	49336808	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.230769
3	49368936	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.25
3	49368973	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.153846
3	49368979	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.181818
3	49384897	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.2
18	49389787	A->G	-	ENSG00000141627	DYM	protein_coding	Intergenic	.	.	Alu	0.6
3	49393465	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.2
3	49406976	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.363636
3	49407047	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.315789
3	49407330	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.22
3	49407331	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.12963
3	49407336	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.102941
3	49407371	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.4
3	49407372	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0238095
3	49407374	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.152941
3	49407414	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0740741
3	49407417	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.104167
3	49407428	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.121951
3	49407429	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.097561
3	49407430	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0487805
22	49473875	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.25
22	49473881	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.333333
22	49486795	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.307692
22	49486798	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.153846
22	49486986	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.15
22	49487010	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.307692
22	49487039	A->G	-	ENSG00000188511	C22orf34	lincRNA	Intergenic	.	.	Alu	0.8
13	49788597	A->G	-	ENSG00000102753	KPNA3	protein_coding	Intergenic	.	.	Alu	0.3
13	49788643	A->G	-	ENSG00000102753	KPNA3	protein_coding	Intergenic	.	.	Alu	0.230769
14	49814133	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.142857
14	49819656	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.416667
14	49823010	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.3
14	49839215	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.3
14	49839285	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.0833333
14	49839286	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.0833333
14	49839353	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.111111
14	49839367	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.25
22	49864746	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.117647
22	49869030	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.130435
22	49869039	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.208333
22	49869044	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.0833333
20	49873651	A->G	+	ENSG00000197818	SLC9A8	protein_coding	Intergenic	.	.	Alu	0.235294
20	49873674	A->G	+	ENSG00000197818	SLC9A8	protein_coding	Intergenic	.	.	Alu	0.3
20	49939869	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.2
20	49939957	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.714286
20	49939963	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.214286
10	49963795	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.166667
10	49963801	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.142857
10	49963805	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.133333
10	49963910	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.0714286
10	49965061	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.1
10	49966655	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.166667
10	49966689	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.3
10	49966691	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.5
10	49966704	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.181818
10	49966705	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.272727
10	49969508	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.0714286
3	50003206	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
13	50008954	A->G	+	ENSG00000204977	TRIM13	protein_coding	Intergenic	.	.	Alu	0.0909091
13	50008963	A->G	+	ENSG00000204977	TRIM13	protein_coding	Intergenic	.	.	Alu	0.111111
3	50010823	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
3	50026792	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.142857
3	50026798	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.133333
3	50026856	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.307692
3	50032906	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.153846
3	50032910	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.142857
3	50038644	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
3	50038646	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.4
3	50038690	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.157895
3	50038706	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.111111
3	50038712	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.272727
3	50038765	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
3	50038778	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.3
3	50038808	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
13	50065558	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.181818
13	50065564	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.3
13	50065565	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.166667
13	50065569	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.142857
13	50065621	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.380952
13	50065625	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.35
13	50065631	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.85
15	50072741	A->G	-	ENSG00000104043	ATP8B4	protein_coding	Intergenic	.	.	Alu	0.125
3	50097141	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.272727
3	50097275	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.333333
3	50097281	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
15	50098368	A->G	-	ENSG00000104043	ATP8B4	protein_coding	Intergenic	.	.	Alu	0.166667
3	50099076	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.142857
3	50099078	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.25
3	50099134	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.230769
3	50099148	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.222222
3	50112150	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.117647
3	50112155	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.388889
3	50112171	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.105263
3	50112217	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.133333
3	50112221	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.259259
3	50112226	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0833333
3	50112266	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.157895
3	50112269	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.428571
3	50112273	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0769231
3	50112295	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	1
3	50112305	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.133333
3	50112318	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0425532
3	50112360	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	1
3	50112361	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	1
14	50115290	A->G	-	ENSG00000100483	VCPKMT	protein_coding	Intergenic	.	.	Alu	0.272727
13	50118674	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.107143
13	50118744	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.190476
13	50118745	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.1
13	50118813	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.238095
13	50118814	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.238095
13	50118866	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.0769231
3	50119242	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.153846
3	50119355	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.3
3	50119578	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.142857
3	50119579	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.142857
3	50119673	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.0833333
12	50153506	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.214286
12	50153512	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.133333
12	50161967	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.285714
12	50161986	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.153846
12	50162007	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.166667
12	50164057	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.5
12	50164084	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.333333
12	50164092	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.153846
12	50164313	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.142857
12	50164340	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.5
12	50164349	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.153846
12	50164352	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.153846
12	50164373	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.2
14	50197749	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.102564
14	50197761	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0487805
14	50197785	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0909091
14	50197791	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.047619
14	50197821	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.14
14	50197826	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.191489
14	50197827	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.354167
14	50197887	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0540541
14	50197899	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.285714
14	50197923	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.117647
14	50197962	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.23913
14	50197963	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0444444
14	50214582	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0526316
14	50215017	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0882353
15	50324682	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.285714
15	50324826	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.3
15	50331971	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.181818
15	50331972	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.142857
15	50332007	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.125
15	50332036	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.111111
15	50332068	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.190476
15	50332076	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.153846
15	50332121	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.461538
15	50332147	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.115385
15	50334646	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.217391
15	50334672	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.190476
15	50334675	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.25
3	50335086	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.115385
3	50335151	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0434783
3	50335215	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0526316
3	50335409	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0422535
3	50335413	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0350877
3	50335419	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0285714
3	50335454	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0625
3	50335518	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0441176
3	50335591	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0434783
3	50335662	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	50335807	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.1
3	50335809	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.210526
3	50335829	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.285714
7	50339495	A->G	+	ENSG00000185811	IKZF1	protein_coding	Intergenic	.	.	Alu	0.5
7	50339496	A->G	+	ENSG00000185811	IKZF1	protein_coding	Intergenic	.	.	Alu	0.5
22	50349319	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.166667
22	50374807	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.181818
22	50394820	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.2
22	50396375	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.142857
22	50396445	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.25
12	50409408	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.181818
12	50409427	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.2
12	50409575	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.181818
12	50409583	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.214286
12	50409584	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.142857
12	50409585	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.357143
12	50409620	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.4
12	50409630	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.636364
12	50409647	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.2
12	50409882	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.25
12	50409942	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.5
12	50409972	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.5
12	50459883	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.214286
12	50459884	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.266667
12	50460015	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.142857
12	50460020	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.2
12	50460024	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.142857
14	50473791	A->G	-	ENSG00000012983	MAP4K5	protein_coding	Intergenic	.	.	Alu	0.2
14	50473796	A->G	-	ENSG00000012983	MAP4K5	protein_coding	Intergenic	.	.	Alu	1
15	50494878	A->G	+	ENSG00000138592	USP8	protein_coding	Intergenic	.	.	Alu	0.272727
22	50540019	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
22	50540025	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
1	50576893	A->G	-	ENSG00000185104	FAF1	protein_coding	Intergenic	.	.	Alu	0.538462
15	50582208	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.363636
20	50588919	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.2
15	50619306	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.1875
15	50619323	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.1875
17	50727997	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0833333
17	50729993	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.3
17	50730017	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.4
17	50730018	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.133333
17	50730023	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.846154
17	50730028	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.142857
17	50730040	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.272727
17	50730115	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.542857
17	50730117	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.742857
17	50730138	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.4
17	50730139	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.142857
17	50730365	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0645161
17	50730368	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.28125
17	50730369	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0666667
17	50730370	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0666667
17	50730398	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.148148
17	50730400	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.344828
17	50730401	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.709677
17	50730450	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.295455
17	50730464	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.304348
17	50730465	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0851064
17	50730472	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0681818
17	50730846	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0952381
17	50730872	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.1
17	50730889	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.25
17	50730890	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.105263
17	50731238	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.16
17	50731310	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.111111
17	50735162	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.4
16	50748450	A->G	+	ENSG00000083799	CYLD	protein_coding	Intergenic	.	.	Alu	0.08
14	50801206	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.133333
14	50803932	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.1
14	50803959	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.105263
14	50803964	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.380952
14	50803965	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.380952
14	50804020	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.125
14	50804034	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.166667
14	50811312	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.125
14	50811655	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.0666667
14	50811708	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.2
14	50811734	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.176471
14	50811805	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.214286
20	50907106	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.545455
20	50922658	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.128205
20	50922717	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.117647
20	50922863	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.125
20	50923585	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.153846
20	50923620	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.0909091
20	50923656	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.153846
20	50923696	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.133333
13	50939193	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.111111
13	50939236	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.421053
13	50939242	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.352941
13	50939260	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.263158
13	50939440	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.727273
13	50939459	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.545455
1	50957490	A->G	-	ENSG00000185104	FAF1	protein_coding	Intergenic	.	.	Alu	0.153846
17	50971606	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.230769
17	50971632	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.3
17	50992040	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.4
17	50996948	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.454545
17	50996957	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.857143
17	50996977	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.176471
17	50997018	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.125
17	50997056	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.5
17	50997057	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.277778
17	50997089	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.333333
17	50997092	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	50998095	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.111111
17	50998128	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0909091
17	50998140	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.08
17	50998143	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	50998160	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.08
17	50998210	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.5
17	51026744	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.111111
17	51027214	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.214286
17	51027229	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.3
17	51027324	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.454545
17	51054195	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	51054219	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.5
17	51054231	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.6
17	51083355	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.105263
17	51083399	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.133333
17	51086029	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.142857
17	51086045	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.125
17	51086060	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.4
17	51086066	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.285714
17	51086083	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.25
17	51086092	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0869565
17	51086111	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.105263
17	51086157	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.176471
17	51086158	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.294118
17	51086159	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.352941
17	51086179	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.130435
17	51086207	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0869565
17	51086222	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0833333
17	51086759	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.4
17	51086835	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.5
17	51115327	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.454545
1	51246579	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.25
1	51251705	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.2
1	51251709	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.181818
1	51251815	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.142857
1	51251823	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.2
1	51251824	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.2
1	51251986	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.1
1	51253380	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.107143
1	51253402	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.130435
1	51253438	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.3125
1	51253443	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.142857
17	51269018	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.333333
17	51269086	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.173913
17	51269088	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.0833333
17	51269111	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.133333
17	51269122	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.333333
17	51269125	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.277778
17	51269126	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.111111
17	51269127	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.157895
17	51269144	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.133333
17	51269189	A->G	+	ENSG00000011260	UTP18	protein_coding	Intergenic	.	.	Alu	0.0869565
1	51451950	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.0952381
1	51452020	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.0869565
1	51452109	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.0833333
1	51452110	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.08
1	51452164	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.166667
3	51469355	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.214286
3	51469359	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.133333
3	51469433	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.111111
3	51469462	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.214286
3	51469476	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.105263
3	51469912	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.615385
3	51469913	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.230769
3	51486241	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	51486445	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.214286
3	51487093	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.181818
3	51487198	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.4
1	51633037	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.3
1	51633306	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.272727
1	51633355	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.12
1	51633670	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.461538
1	51633808	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.125
1	51643871	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.2
1	51643897	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.444444
1	51643933	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.25
1	51643959	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.333333
1	51643965	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.208333
1	51644000	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.1
1	51644401	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.25
1	51644590	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.142857
1	51676538	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.1875
1	51676539	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.25
8	51874078	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.5
8	51874082	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.09375
8	51874113	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.0571429
15	51934527	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.818182
15	51934565	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.2
15	51934888	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.266667
15	51934985	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.214286
15	51935016	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.133333
15	51935076	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.1875
15	51940210	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.363636
15	51943619	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	51943679	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.105263
15	51945179	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.272727
15	51945202	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.461538
15	51945211	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.357143
15	51956232	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.166667
15	51956247	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.272727
15	51974538	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.181818
15	51974544	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.2
15	51974779	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.230769
15	51978974	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.2
15	51978990	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.454545
15	51978996	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.333333
1	52040071	A->G	-	ENSG00000117862	TXNDC12	protein_coding	Intergenic	.	.	Alu	0.5
1	52040206	A->G	-	ENSG00000117862	TXNDC12	protein_coding	Intergenic	.	.	Alu	0.363636
1	52073604	A->G	+	ENSG00000134717	BTF3L4	protein_coding	Intergenic	.	.	Alu	0.25
1	52076320	A->G	+	ENSG00000134717	BTF3L4	protein_coding	Intergenic	.	.	Alu	0.125
1	52076321	A->G	+	ENSG00000134717	BTF3L4	protein_coding	Intergenic	.	.	Alu	0.1875
1	52076462	A->G	+	ENSG00000134717	BTF3L4	protein_coding	Intergenic	.	.	Alu	0.166667
1	52092008	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
1	52092452	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
15	52172345	A->G	-	ENSG00000069966	GNB5	protein_coding	Intergenic	.	.	Alu	0.363636
19	52193650	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.142857
19	52193670	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.315789
19	52193687	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.153846
19	52193703	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.705882
19	52193736	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.142857
19	52193750	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.85
19	52193753	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.315789
19	52193767	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.117647
19	52193770	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.625
19	52193857	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.28
19	52193910	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.75
19	52193928	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.166667
19	52193929	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.818182
19	52193930	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.636364
19	52193947	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.25
19	52193998	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.16
19	52194033	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.190476
19	52194034	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.736842
19	52270937	A->G	+	ENSG00000196214	ZNF766	protein_coding	Intergenic	.	.	Alu	0.416667
19	52270973	A->G	+	ENSG00000196214	ZNF766	protein_coding	Intergenic	.	.	Alu	0.25
19	52271813	A->G	+	ENSG00000196214	ZNF766	protein_coding	Intergenic	.	.	Alu	0.380952
19	52271875	A->G	+	ENSG00000196214	ZNF766	protein_coding	Intergenic	.	.	Alu	0.2
19	52298462	A->G	+	ENSG00000198464	ZNF480	protein_coding	Intergenic	.	.	Alu	0.176471
19	52298468	A->G	+	ENSG00000198464	ZNF480	protein_coding	Intergenic	.	.	Alu	0.117647
19	52298511	A->G	+	ENSG00000198464	ZNF480	protein_coding	Intergenic	.	.	Alu	0.142857
19	52298520	A->G	+	ENSG00000198464	ZNF480	protein_coding	Intergenic	.	.	Alu	0.153846
19	52298614	A->G	+	ENSG00000198464	ZNF480	protein_coding	Intergenic	.	.	Alu	0.181818
3	52414903	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.0869565
3	52414951	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.111111
3	52414953	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.37931
3	52414959	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.178571
3	52415296	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.333333
3	52415297	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.272727
3	52415314	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.2
1	52441322	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.2
1	52441380	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.823529
1	52441381	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.4
1	52441390	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.263158
1	52441415	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.176471
1	52441539	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.181818
1	52441565	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.727273
1	52441566	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.909091
1	52505507	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.2
1	52531984	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.210526
1	52531985	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.142857
1	52531999	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.222222
1	52532016	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.208333
1	52532026	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.68
1	52532034	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.217391
1	52532039	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.181818
1	52532052	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.103448
1	52532056	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.0645161
1	52532058	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.0666667
1	52532061	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.238095
3	52591708	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.181818
19	52639617	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.75
19	52639626	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.142857
19	52639636	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.666667
3	52639638	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.166667
19	52642500	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.285714
19	52647425	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.230769
19	52647444	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.111111
19	52647481	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.2
19	52647486	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.125
19	52647527	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.4
19	52647541	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.4
19	52647549	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.533333
19	52647554	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.2
19	52647555	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.6
8	52685079	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0338983
8	52685142	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.04
8	52698191	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.153846
8	52698200	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.133333
8	52698228	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.1875
8	52698391	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0645161
8	52698483	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0714286
8	52698509	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0526316
8	52698514	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.107143
8	52698533	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0491803
8	52698534	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0327869
8	52698584	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0645161
8	52698585	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0625
8	52698787	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.028169
8	52698796	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0229885
8	52698802	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0864198
8	52698838	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0909091
8	52698854	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.416667
8	52698857	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0210526
8	52698862	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.184783
8	52698865	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.025
8	52698899	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.481013
8	52698909	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.08
8	52698918	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0517241
8	52698923	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0923077
8	52698928	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.464286
8	52698933	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.181818
8	52698937	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0277778
8	52698963	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0416667
8	52698964	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0277778
8	52701215	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.184211
8	52701257	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0666667
8	52701261	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0740741
8	52701304	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.125
8	52701328	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0833333
8	52701338	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.105263
8	52701398	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0869565
8	52706796	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.2
8	52706797	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.2
8	52706799	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.4
8	52706835	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.111111
8	52706855	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.357143
8	52706856	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.285714
8	52706857	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.153846
8	52706866	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.722222
8	52706889	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.409091
8	52706904	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.44
14	52714633	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.4
14	52714642	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.727273
14	52714645	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.208333
14	52714746	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.0645161
14	52714772	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.333333
14	52714787	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.133333
14	52714811	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.210526
14	52720102	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.0625
19	52723368	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.411765
19	52723382	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.0952381
19	52723395	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.0952381
19	52726288	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.133333
19	52726958	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.2
19	52733561	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.4
19	52925327	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.1875
19	52925378	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.166667
19	52925433	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.133333
19	52925455	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.142857
19	52926481	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.181818
19	52926494	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.230769
19	52926495	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.615385
19	52926531	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.125
19	52926557	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.125
19	52926596	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.125
19	52926605	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.666667
19	52926606	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.166667
19	52926886	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.181818
19	52926988	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.142857
19	52927012	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.130435
19	52927057	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.3
19	52939480	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
19	52939721	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
19	52939722	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.4
19	52940987	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.208333
19	52940990	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.0833333
19	52941014	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.08
19	52941024	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.269231
19	52941044	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.133333
19	52941054	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.176471
19	52941090	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.105263
19	52941096	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.117647
19	52941150	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.176471
19	52941154	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.210526
19	52941173	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.235294
19	52941182	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.222222
19	52941200	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.461538
19	52941214	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.142857
X	53183680	A->G	-	.	.	.	Intergenic	.	.	Alu	0.636364
X	53183845	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
X	53183846	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
4	53255138	A->G	-	ENSG00000184178	SCFD2	protein_coding	Intergenic	.	.	Alu	0.4
4	53255143	A->G	-	ENSG00000184178	SCFD2	protein_coding	Intergenic	.	.	Alu	0.4
3	53308330	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.181818
3	53308556	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.157895
6	53320057	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.136364
6	53320079	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.269231
6	53320112	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.121212
6	53320168	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.105263
6	53320173	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.0909091
6	53320179	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.08
6	53320182	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.107143
6	53320193	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.16
6	53320195	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.28
6	53320202	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.56
6	53320205	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.416667
6	53320235	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.111111
6	53320260	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.230769
6	53320271	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.227273
6	53320434	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.142857
6	53320448	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.0952381
6	53320464	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.315789
6	53320468	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.105263
6	53320474	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.8
6	53320500	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.411765
6	53320503	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.294118
6	53320504	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.117647
6	53320507	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.15
6	53330636	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.190476
6	53330660	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.0985915
3	53332730	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.166667
3	53333239	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.238095
3	53333265	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.1
3	53333278	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.15
3	53333279	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.4
3	53333305	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.416667
3	53333340	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.166667
3	53333347	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.4
3	53335344	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.181818
3	53335345	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.272727
3	53335887	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.0555556
3	53335973	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.0645161
3	53335976	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.0588235
3	53336072	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.1
3	53336073	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.0666667
3	53336079	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.12
3	53336081	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.0769231
X	53385409	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.272727
4	53419534	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.2
4	53419540	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.1
4	53419541	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.15
4	53419558	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.555556
4	53419605	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.35
4	53419606	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.25
4	53419893	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.1
4	53420030	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.666667
4	53420034	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.166667
4	53420051	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.1
4	53420240	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.142857
4	53420282	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.0487805
4	53420283	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.0930233
4	53420285	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.227273
4	53420298	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.111111
4	53420312	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.234043
4	53436943	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.1875
4	53437094	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.4
4	53437145	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
5	53563135	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.5
5	53563602	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.181818
5	53563663	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.375
5	53563685	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.307692
5	53563699	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.6
5	53605759	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.769231
5	53605760	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.857143
5	53605837	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.25
5	53605852	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.0833333
5	53605862	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.1
5	53605893	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.714286
5	53605899	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.545455
5	53605920	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.130435
5	53606407	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.181818
5	53606461	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.285714
5	53606467	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.25
5	53606547	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.3
12	53668400	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.454545
12	53668401	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.25
2	53746607	A->G	-	ENSG00000115239	ASB3	protein_coding	Intergenic	.	.	Alu	0.153846
2	53746616	A->G	-	ENSG00000115239	ASB3	protein_coding	Intergenic	.	.	Alu	0.166667
2	53746617	A->G	-	ENSG00000115239	ASB3	protein_coding	Intergenic	.	.	Alu	0.25
2	53789241	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.133333
2	53789244	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.133333
2	53789313	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.3
2	53789828	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.583333
2	53789888	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.181818
2	53789925	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.416667
2	53790163	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.5
2	53790236	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.307692
16	53881001	A->G	+	ENSG00000140718	FTO	protein_coding	Intergenic	.	.	Alu	0.166667
16	53881004	A->G	+	ENSG00000140718	FTO	protein_coding	Intergenic	.	.	Alu	0.166667
2	53951211	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.1875
2	53951220	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.263158
2	53951259	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.142857
2	53951260	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.1875
2	53951262	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.153846
2	53951310	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.157895
2	53951333	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.166667
2	53951354	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.125
2	53951357	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.470588
2	53965291	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.25
2	53965327	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.384615
8	53990103	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.416667
8	53990115	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.3125
8	53990314	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.230769
8	53990436	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.5
8	53990490	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.142857
8	53990643	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.166667
8	53992396	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.166667
8	53992450	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.5
8	53992486	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.266667
8	53992498	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.714286
8	53993015	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.166667
8	53993021	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.117647
8	53993038	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.25
8	53993081	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.0869565
8	53993085	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.272727
8	53993091	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.222222
8	53993093	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.2
8	53993176	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.125
8	53993200	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.407407
5	54014551	A->G	-	ENSG00000185305	ARL15	protein_coding	Intergenic	.	.	Alu	0.2
1	54032988	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.333333
1	54032994	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.117647
1	54032998	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.176471
1	54033039	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.2
1	54033068	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.133333
1	54033092	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.214286
1	54050390	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.0810811
1	54050395	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.111111
1	54050396	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.111111
1	54050834	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.0952381
1	54051136	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.133333
5	54055642	A->G	-	ENSG00000185305	ARL15	protein_coding	Intergenic	.	.	Alu	0.4
19	54177679	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.181818
19	54177687	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.181818
19	54177714	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.125
19	54177715	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.125
X	54562102	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
X	54562110	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
X	54562126	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	54562145	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	54562146	A->G	+	.	.	.	Intergenic	.	.	Alu	0.714286
X	54562172	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
X	54562175	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
X	54562185	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
X	54562211	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
X	54562226	A->G	+	.	.	.	Intergenic	.	.	Alu	0.411765
X	54562229	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
X	54562243	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
X	54562252	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	54562281	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
X	54562307	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
X	54562308	A->G	+	.	.	.	Intergenic	.	.	Alu	0.375
X	54562651	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
X	54562666	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
X	54562672	A->G	+	.	.	.	Intergenic	.	.	Alu	0.103448
X	54562673	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
X	54562686	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0555556
X	54562705	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
X	54562708	A->G	+	.	.	.	Intergenic	.	.	Alu	0.516129
X	54562713	A->G	+	.	.	.	Intergenic	.	.	Alu	0.103448
X	54562734	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16
X	54562748	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
X	54562750	A->G	+	.	.	.	Intergenic	.	.	Alu	0.32
X	54562781	A->G	+	.	.	.	Intergenic	.	.	Alu	0.148148
X	54563515	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
X	54563633	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
X	54563634	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	54563647	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
X	54563665	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
X	54563675	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
X	54563692	A->G	+	.	.	.	Intergenic	.	.	Alu	0.428571
X	54563711	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	54563731	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
X	54563774	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
X	54564978	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
1	54639290	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
1	54639292	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
1	54639296	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
1	54639300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
1	54639301	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
2	54979266	A->G	-	ENSG00000115310	RTN4	protein_coding	Intergenic	.	.	Alu	0.25
14	55058669	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0740741
14	55058670	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0740741
14	55058672	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0714286
14	55059377	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.131579
14	55059383	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0869565
14	55275703	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.047619
14	55278711	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.117647
14	55278741	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.261905
14	55278767	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0512821
14	55278826	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.217391
14	55278828	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.145833
14	55278859	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.37931
14	55278870	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.25
14	55278877	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.708333
14	55278947	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0625
14	55278948	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.176471
14	55278949	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	1
14	55278950	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0606061
14	55278961	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0588235
14	55279055	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.75
14	55279112	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.125
14	55279113	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0545455
14	55279125	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0540541
14	55279127	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0266667
14	55279131	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.027027
14	55279136	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0428571
14	55279140	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.246154
14	55279166	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	1
14	55279167	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0307692
14	55279183	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	1
14	55279206	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.592593
14	55279207	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.3
14	55281120	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.294118
14	55281133	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.578947
14	55281150	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0487805
14	55281193	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.193548
14	55281219	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.181818
14	55285159	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.333333
14	55285178	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.2
15	55287147	A->G	-	ENSG00000069974	RAB27A	protein_coding	Intergenic	.	.	Alu	0.272727
18	55376136	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.125
18	55376146	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.111111
18	55376193	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.125
18	55376194	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.0909091
18	55376252	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.153846
18	55376285	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.416667
18	55376293	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.153846
18	55376298	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.166667
18	55376299	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.166667
2	55393388	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.117647
4	55401878	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.315789
4	55401897	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.136364
4	55401907	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.136364
4	55401930	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.130435
4	55401933	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.1
4	55401946	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.142857
2	55407370	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.357143
2	55407386	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.533333
2	55407387	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.230769
2	55407542	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.2
2	55407545	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.454545
2	55407856	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.166667
2	55407964	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.105263
2	55407990	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.142857
2	55407997	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.133333
7	55408549	A->G	+	ENSG00000132434	LANCL2	protein_coding	Intergenic	.	.	Alu	0.25
7	55408590	A->G	+	ENSG00000132434	LANCL2	protein_coding	Intergenic	.	.	Alu	0.111111
2	55409837	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.5
2	55409878	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.315789
2	55410020	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.533333
4	55412163	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0909091
4	55412183	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0857143
4	55412193	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0588235
4	55412218	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.108108
4	55412229	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.648649
4	55412234	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0857143
4	55412235	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.257143
4	55412242	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0714286
4	55412243	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.392857
4	55412244	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.107143
4	55412273	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.117647
4	55412274	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.666667
5	55433031	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.176471
5	55433047	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.142857
5	55433054	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.45
5	55433099	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.416667
5	55433208	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.4
5	55433220	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.185185
5	55433245	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.217391
5	55433286	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.0714286
5	55433291	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.666667
5	55433681	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.117647
5	55433684	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.214286
5	55433704	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.733333
5	55433728	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.125
5	55433749	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.461538
5	55433757	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	55433758	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.384615
5	55433759	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.214286
5	55433771	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.105263
5	55434009	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.647059
5	55435893	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.25
5	55472341	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.3
18	55549075	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.133333
18	55549108	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.588235
18	55549109	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.176471
2	55574052	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.0526316
2	55574092	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.108108
2	55574101	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.0571429
2	55591215	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.545455
12	55758970	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.2
12	55787491	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.272727
12	55787565	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.181818
12	55787574	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.307692
12	55787575	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.230769
12	55787601	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.230769
12	55787607	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.142857
12	55787645	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.181818
12	55787668	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.181818
12	55787708	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.2
12	55787887	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.166667
12	55788021	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.166667
12	55792509	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.148148
12	55792510	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.148148
8	55889423	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.272727
8	55889498	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.153846
8	55890004	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.246154
8	55890005	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.107692
8	55890019	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0405405
8	55890063	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0588235
8	55890075	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.030303
8	55890189	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0697674
8	55890191	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0416667
8	55890198	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.102041
8	55890218	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.179487
8	55890232	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3125
8	55890237	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.226415
8	55890802	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.6
8	55890840	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.5
8	55890857	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.25
8	55890867	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.230769
8	55891194	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.181818
8	55891231	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.210526
8	55891232	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.631579
8	55891258	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.4
7	55892683	A->G	+	ENSG00000249773	AC092647.5	protein_coding	Intergenic	.	.	Alu	0.181818
7	55892687	A->G	+	ENSG00000249773	AC092647.5	protein_coding	Intergenic	.	.	Alu	0.2
7	55892775	A->G	+	ENSG00000249773	AC092647.5	protein_coding	Intergenic	.	.	Alu	0.272727
8	55896127	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0833333
8	55896173	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3125
8	55896195	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0701754
8	55896219	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0434783
8	55896257	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.03125
8	55896778	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.105263
8	55896818	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.15
8	55896842	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.105263
8	55896879	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.217391
8	55896925	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.166667
7	55902870	A->G	+	ENSG00000249773	AC092647.5	protein_coding	Intergenic	.	.	Alu	0.125
8	55904691	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.133333
8	55905269	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.117647
8	55905281	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.25
8	55905323	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.125
8	55906537	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.722222
8	55906540	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.235294
8	55906622	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.125
8	55906691	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.147059
8	55906694	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.166667
8	55906695	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0540541
8	55916991	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.153846
8	55917265	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.166667
8	55917325	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.333333
8	55917333	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.545455
8	55922567	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.4
8	55922572	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55922682	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.545455
8	55922687	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3
4	55960986	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0681818
4	55960999	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.05
4	55961045	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.117647
4	55961503	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.305556
4	55961575	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.142857
4	55961578	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.190476
4	55961600	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.153846
4	55961644	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.111111
4	55961713	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0952381
4	55962180	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.272727
4	55962239	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.4
4	55962245	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.166667
4	55962307	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.8
4	55962347	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.391304
4	55962361	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.136364
4	55962362	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.142857
4	55962370	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.269231
4	55962374	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.125
4	55962376	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0833333
4	55962383	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0869565
4	55969275	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.5
4	55969276	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	1
4	55969307	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.2
4	55976030	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0869565
4	55976035	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.666667
4	55976040	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.08
4	55976066	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0909091
4	55976068	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.428571
4	55976102	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.173913
4	55976117	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.615385
4	55976150	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.571429
7	55986221	A->G	+	ENSG00000146729	NIPSNAP2	protein_coding	Intergenic	.	.	Alu	0.0833333
7	55989988	A->G	+	ENSG00000146729	NIPSNAP2	protein_coding	Intergenic	.	.	Alu	0.2
4	56056564	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.0952381
4	56056648	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.266667
4	56056815	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.166667
4	56056817	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.285714
4	56056818	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.230769
4	56056831	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.153846
7	56070545	A->G	+	ENSG00000129103	SUMF2	protein_coding	Intergenic	.	.	Alu	0.3
7	56096908	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
7	56096913	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
7	56096943	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
7	56096949	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
7	56097999	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	56098067	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
7	56098073	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
7	56098720	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
7	56098721	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	56098768	A->G	-	.	.	.	Intergenic	.	.	Alu	0.178571
7	56098781	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0645161
7	56098817	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	56098873	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
7	56099255	A->G	-	.	.	.	Intergenic	.	.	Alu	0.115385
12	56136540	A->G	+	ENSG00000139641	ESYT1	protein_coding	Intergenic	.	.	Alu	0.2
12	56311947	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.105263
12	56312018	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.125
12	56312501	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.0833333
12	56312517	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	56313678	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.103448
12	56313682	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.411765
12	56313711	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.166667
12	56313731	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.315789
12	56313739	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.125
12	56313745	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.714286
12	56314106	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.3
12	56314263	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.166667
12	56352506	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.153846
12	56352513	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.166667
12	56352514	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.181818
12	56352515	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.166667
12	56352540	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.181818
12	56352912	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.2
12	56352944	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.166667
12	56352959	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.4
12	56353019	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.2
12	56353046	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.636364
12	56353108	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.2
12	56353122	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.181818
4	56475514	A->G	+	ENSG00000174780	SRP72	protein_coding	Intergenic	.	.	Alu	0.2
4	56475517	A->G	+	ENSG00000174780	SRP72	protein_coding	Intergenic	.	.	Alu	0.3
4	56475519	A->G	+	ENSG00000174780	SRP72	protein_coding	Intergenic	.	.	Alu	0.4
12	56535270	A->G	+	ENSG00000076067	RBMS2	protein_coding	Intergenic	.	.	Alu	0.3
12	56609076	A->G	-	ENSG00000076108	BAZ2A	protein_coding	Intergenic	.	.	Alu	0.181818
18	56611243	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0869565
18	56611308	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.25
18	56611759	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.166667
18	56611818	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.285714
18	56611843	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.1
18	56611879	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0769231
18	56611909	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.125
18	56611916	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.142857
18	56611973	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.166667
18	56611987	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.357143
18	56612113	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.114286
18	56612139	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.241379
18	56612140	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.137931
18	56612146	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.142857
12	56685888	A->G	-	ENSG00000110958	PTGES3	protein_coding	Intergenic	.	.	Alu	0.25
12	56730563	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.2
12	56730564	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.153846
12	56730573	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.4
12	56730574	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.133333
12	56730589	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.153846
12	56731282	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.0869565
12	56731286	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.0952381
12	56731292	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.5
12	56731387	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.166667
12	56731396	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.428571
12	56731397	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.307692
12	56731436	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.384615
12	56731460	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.166667
12	56731462	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.461538
12	56731463	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.384615
12	56731486	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.181818
4	56924928	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.166667
4	56924929	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.166667
4	56939226	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.3
4	56939531	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.166667
4	56939539	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.230769
4	56939746	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.157895
4	56940106	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.285714
4	56940115	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.153846
4	56940132	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.2
15	56971199	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.125
15	56971382	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.107143
12	57067979	A->G	-	ENSG00000166881	NEMP1	protein_coding	Intergenic	.	.	Alu	0.7
12	57068043	A->G	-	ENSG00000166881	NEMP1	protein_coding	Intergenic	.	.	Alu	0.384615
12	57068044	A->G	-	ENSG00000166881	NEMP1	protein_coding	Intergenic	.	.	Alu	0.230769
12	57068052	A->G	-	ENSG00000166881	NEMP1	protein_coding	Intergenic	.	.	Alu	0.454545
4	57085039	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.166667
4	57085040	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.166667
15	57098042	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.2
15	57098065	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.121212
15	57098070	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.0882353
15	57098145	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.0952381
15	57153929	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.181818
15	57173076	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.181818
15	57294845	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.105263
15	57294859	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.117647
17	57304095	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.333333
12	57325768	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.111111
12	57325822	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.230769
12	57335402	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.2
17	57345690	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57345699	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.111111
17	57409754	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.192308
17	57409775	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.1
17	57409806	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.111111
17	57409821	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.136364
17	57409830	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.2
17	57409831	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57409845	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.45
17	57409858	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.105263
17	57409861	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.444444
17	57409888	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57409914	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.3125
17	57409929	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.272727
17	57409968	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.190476
12	57421241	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.6
17	57450467	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0625
17	57450550	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.075
17	57450591	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0810811
17	57450592	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.368421
17	57450603	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.09375
17	57450610	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57450626	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.310345
17	57457802	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.176471
17	57460209	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.148148
17	57460221	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.2
17	57460226	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0689655
17	57460239	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.133333
17	57468414	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.133333
17	57500718	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57500878	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57504820	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57526210	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
3	57567861	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	57569409	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
3	57569439	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
3	57569456	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	57569457	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	57569482	A->G	+	.	.	.	Intergenic	.	.	Alu	0.294118
3	57569590	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	57569618	A->G	+	.	.	.	Intergenic	.	.	Alu	0.277778
3	57569624	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
3	57569630	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
3	57569717	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
3	57569747	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
3	57569761	A->G	+	.	.	.	Intergenic	.	.	Alu	0.35
3	57569764	A->G	+	.	.	.	Intergenic	.	.	Alu	0.421053
3	57569765	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
3	57577934	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.25
3	57578677	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.2
3	57579042	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.142857
3	57579068	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.142857
3	57579077	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.366667
3	57579141	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.142857
3	57579159	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.125
3	57579405	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.210526
3	57579453	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.533333
3	57579454	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.214286
3	57579502	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.285714
3	57579549	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.25
3	57579550	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.1875
3	57587132	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.142857
3	57587133	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.142857
3	57587140	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.285714
3	57587141	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.214286
18	57619206	A->G	-	ENSG00000134440	NARS	protein_coding	Intergenic	.	.	Alu	0.3
17	57647318	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57647338	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.3
17	57647361	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0625
17	57647393	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.826087
17	57647394	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.565217
17	57647401	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0833333
17	57647719	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.764706
17	57647744	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.25
17	57647745	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.642857
17	57647770	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.2
17	57647774	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.2
17	57648037	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.266667
17	57648108	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57664334	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.111111
17	57664407	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.103448
3	57677468	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.230769
3	57677533	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.307692
3	57677552	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.181818
3	57677574	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.352941
3	57677611	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.142857
3	57677613	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.142857
3	57677618	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.285714
3	57677682	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.333333
3	57677720	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.333333
19	57691924	A->G	-	ENSG00000204519	ZNF551	protein_coding	Intergenic	.	.	Alu	0.2
19	57715176	A->G	+	ENSG00000204519	ZNF551	protein_coding	Intergenic	.	.	Alu	0.25
11	57723299	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.166667
11	57723362	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.1
11	57723424	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.166667
11	57734093	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.2
11	57734519	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.230769
11	57734538	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.166667
19	57750364	A->G	+	ENSG00000269026	AC003006.1	protein_coding	Intergenic	.	.	Alu	0.454545
3	57762115	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.25
3	57762157	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.238095
3	57762211	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.125
3	57764423	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.230769
11	57770400	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.25
11	57770467	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.166667
11	57770578	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.166667
3	57775424	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.285714
3	57775471	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.0909091
3	57775566	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.0588235
3	57775603	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.526316
3	57775609	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.333333
3	57775635	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.142857
3	57775763	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.3
3	57775825	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.454545
3	57795418	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.117647
19	57810192	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.3
19	57810294	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.2
19	57811867	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.2
19	57811871	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.3
19	57866787	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.2
19	57866788	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.142857
19	57866806	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.125
19	57866807	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.133333
19	57866820	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.15
19	57866864	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.176471
19	57866876	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.1875
19	57866891	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.166667
19	57866917	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.15
19	57866918	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.3
19	57866981	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.391304
19	57867012	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.444444
14	58217459	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.157895
14	58217568	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.0869565
14	58221037	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.181818
14	58221096	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.153846
14	58229603	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.153846
19	58265847	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.2
19	58265848	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.2
19	58265849	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.272727
19	58266365	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.357143
19	58266372	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.357143
14	58271467	A->G	-	ENSG00000100567	PSMA3	protein_coding	Intergenic	.	.	Alu	0.0285714
19	58275559	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.181818
19	58275607	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.181818
19	58275710	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.272727
19	58275711	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.25
19	58275730	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.272727
14	58277084	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.114286
14	58277292	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.0714286
14	58277304	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.08
14	58277309	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.217391
14	58277310	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.0909091
14	58277398	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.181818
19	58313425	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.470588
19	58313431	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.583333
19	58313534	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.307692
19	58313552	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.363636
19	58313553	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.5
19	58313574	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.2
14	58317072	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.5
14	58317078	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.166667
14	58322737	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.133333
14	58322787	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.153846
14	58322851	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.307692
14	58322855	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.166667
14	58322917	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.153846
20	58324716	A->G	+	ENSG00000124209	RAB22A	protein_coding	Intergenic	.	.	Alu	0.272727
20	58324746	A->G	+	ENSG00000124209	RAB22A	protein_coding	Intergenic	.	.	Alu	0.25
17	58340501	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.352941
17	58340507	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58340523	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.117647
17	58340546	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.15
17	58340547	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.473684
17	58340569	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.166667
17	58340573	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.137931
17	58340577	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.0689655
17	58340588	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.354839
17	58340739	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.103448
17	58340745	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.16129
17	58340761	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.533333
17	58340770	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.0645161
17	58340842	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.115385
17	58340845	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.1
17	58340886	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.588235
17	58340889	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.277778
17	58340895	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.6875
17	58340917	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.111111
17	58340952	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.210526
17	58341360	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.142857
17	58341369	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.25
17	58341372	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.153846
17	58341429	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.166667
17	58341465	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.181818
17	58341474	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.166667
17	58341479	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58341673	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.0714286
17	58341681	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.482759
17	58341722	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.242424
17	58341727	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.111111
17	58341758	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.12
17	58341780	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.12
17	58341783	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.21875
17	58341784	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.129032
17	58341785	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.206897
17	58341786	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.25
17	58341789	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.137931
17	58341815	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.666667
17	58341825	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.0882353
17	58341830	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.264706
17	58341856	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.294118
17	58341861	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.434783
17	58341881	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.3125
17	58341891	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.388889
17	58341919	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
3	58342451	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.166667
3	58342514	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.181818
19	58564983	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.230769
19	58565041	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.105263
19	58565045	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.368421
19	58565061	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.25
19	58565081	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.166667
19	58565123	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.181818
19	58565126	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.166667
19	58565210	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.2
20	58684010	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	0.363636
15	58921913	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.181818
15	58922929	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.545455
15	58923979	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.111111
15	58923992	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.08
15	58923993	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.16
15	58926717	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.102041
15	58926796	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.111111
15	58926841	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.1
8	59086118	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.0909091
17	59203244	A->G	+	ENSG00000068489	PRR11	protein_coding	Intergenic	.	.	Alu	0.1
17	59203264	A->G	+	ENSG00000068489	PRR11	protein_coding	Intergenic	.	.	Alu	0.266667
17	59203459	A->G	+	ENSG00000068489	PRR11	protein_coding	Intergenic	.	.	Alu	0.4
17	59204907	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.0857143
17	59204943	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	59204948	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.0625
14	59573700	A->G	-	ENSG00000151838	CCDC175	protein_coding	Intergenic	.	.	Alu	0.2
11	59583752	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.2
11	59583779	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.181818
11	59583843	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.136364
17	59588152	A->G	+	ENSG00000108406	DHX40	protein_coding	Intergenic	.	.	Alu	0.333333
11	59592904	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.142857
11	59593017	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.272727
17	59658056	A->G	+	ENSG00000141367	CLTC	protein_coding	Intergenic	.	.	Alu	0.416667
15	59689953	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
15	59689980	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
15	59690753	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
17	59739470	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.2
17	59816803	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.4
17	59816825	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.166667
17	59816826	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.294118
17	59816840	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.105263
17	59816896	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.133333
17	59816898	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.142857
17	59900907	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.142857
17	59901535	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.133333
17	59901782	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.5
17	59901835	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.272727
17	59901898	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.416667
17	59901983	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.153846
17	59901997	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.5
17	59902000	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.3
10	59902490	A->G	-	ENSG00000108091	CCDC6	protein_coding	Intergenic	.	.	Alu	0.105263
10	59902531	A->G	-	ENSG00000108091	CCDC6	protein_coding	Intergenic	.	.	Alu	0.153846
10	59902532	A->G	-	ENSG00000108091	CCDC6	protein_coding	Intergenic	.	.	Alu	0.142857
17	59903287	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.416667
17	59903293	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.181818
17	59903354	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.166667
14	60099973	A->G	+	ENSG00000126773	PCNX4	protein_coding	Intergenic	.	.	Alu	0.153846
14	60099985	A->G	+	ENSG00000126773	PCNX4	protein_coding	Intergenic	.	.	Alu	0.571429
14	60099990	A->G	+	ENSG00000126773	PCNX4	protein_coding	Intergenic	.	.	Alu	0.642857
14	60100053	A->G	+	ENSG00000126773	PCNX4	protein_coding	Intergenic	.	.	Alu	0.111111
14	60272646	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.0363636
14	60272654	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.0322581
17	60518333	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.181818
8	60518469	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0377358
8	60518536	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0425532
17	60519094	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.125
17	60519209	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.142857
17	60519214	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.285714
17	60519876	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.2
17	60519881	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.454545
17	60519895	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.6
17	60519908	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.4
17	60519912	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.2
17	60519922	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.363636
8	60526692	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0714286
8	60526720	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0769231
8	60586854	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0952381
2	60904633	A->G	+	ENSG00000162924	REL	protein_coding	Intergenic	.	.	Alu	0.166667
2	60956854	A->G	+	ENSG00000162927	PUS10	protein_coding	Intergenic	.	.	Alu	0.2
17	61175971	A->G	+	ENSG00000141376	BCAS3	protein_coding	Intergenic	.	.	Alu	0.2
17	61175975	A->G	+	ENSG00000141376	BCAS3	protein_coding	Intergenic	.	.	Alu	0.2
2	61196583	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.266667
2	61196588	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.153846
2	61196607	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.153846
2	61196655	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.153846
2	61196670	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
2	61269218	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.153846
2	61269258	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.214286
2	61269293	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.227273
2	61269301	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.190476
2	61269321	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.333333
2	61269369	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.0952381
2	61277297	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
11	61319547	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.285714
11	61319596	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.307692
11	61319702	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.272727
11	61319703	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.545455
11	61320617	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.153846
11	61321109	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.153846
11	61321115	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.142857
2	61353507	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.0833333
2	61359896	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.103448
2	61359984	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.294118
2	61360003	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.105263
2	61360012	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.105263
2	61360038	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.133333
5	61378633	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.3
5	61378765	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.7
5	61378790	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.181818
5	61378830	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.727273
5	61378916	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.809524
5	61378925	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.190476
5	61378938	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.68
5	61378965	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.0952381
5	61378970	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.166667
5	61379025	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.214286
5	61379027	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.153846
5	61379031	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.384615
5	61379058	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.272727
5	61379060	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.272727
5	61379106	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.583333
5	61379122	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.307692
5	61431266	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.3
2	61454678	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.105263
2	61454687	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.411765
2	61454744	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.2
2	61454750	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.166667
2	61454752	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.166667
2	61454776	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.153846
2	61503051	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.235294
2	61503068	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.111111
2	61503176	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	61503232	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	61503243	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.25
2	61503246	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	61503385	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.230769
2	61511931	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.333333
2	61512002	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.2
1	61697471	A->G	-	ENSG00000162604	TM2D1	protein_coding	Intergenic	.	.	Alu	0.266667
1	61697484	A->G	-	ENSG00000162604	TM2D1	protein_coding	Intergenic	.	.	Alu	0.2
14	61742631	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.181818
14	61742676	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.2
14	61742677	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.272727
14	61742700	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.214286
14	61742753	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.0666667
14	61742805	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.0909091
14	61742806	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.105263
14	61743152	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.166667
14	61743171	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.15
14	61743172	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.190476
14	61743177	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.0833333
14	61743189	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.130435
14	61743254	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.1875
17	61836174	A->G	-	ENSG00000136492	BRIP1	protein_coding	Intergenic	.	.	Alu	0.2
15	61861100	A->G	-	ENSG00000129003	VPS13C	protein_coding	Intergenic	.	.	Alu	0.181818
2	61881999	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.142857
2	61882071	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.176471
2	61882108	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.166667
2	61882109	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.153846
2	61882550	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.1875
2	61882637	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.166667
2	61882706	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.416667
2	61882712	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.4
2	61882729	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.153846
17	61905019	A->G	-	ENSG00000108506	INTS2	protein_coding	Intergenic	.	.	Alu	0.181818
17	61998697	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.25
17	61998703	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0625
17	61998724	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.34375
17	61998738	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0714286
17	61998798	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.12
17	61998815	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.2
17	61998817	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.173913
17	61998826	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0740741
17	61998871	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0714286
17	61998878	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0740741
17	61998880	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.291667
17	61998885	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.458333
12	62074764	A->G	-	ENSG00000198673	FAM19A2	protein_coding	Intergenic	.	.	Alu	0.0869565
12	62074784	A->G	-	ENSG00000198673	FAM19A2	protein_coding	Intergenic	.	.	Alu	0.0869565
5	62323095	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0909091
5	62323096	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0869565
5	62323098	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0833333
5	62323109	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0769231
5	62323135	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0967742
5	62323145	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0689655
5	62323244	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.1
5	62330126	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.285714
5	62330190	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.153846
5	62330285	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.133333
12	62330360	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0571429
12	62330657	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0857143
12	62330687	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0540541
12	62330787	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0740741
12	62330836	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0576923
12	62330851	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0714286
12	62330859	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0882353
12	62330860	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.047619
12	62331907	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.277778
12	62331931	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.166667
12	62332018	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0952381
12	62332043	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.166667
12	62332053	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.142857
17	62497115	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.214286
17	62499595	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.2
12	62502334	A->G	+	ENSG00000061987	MON2	protein_coding	Intergenic	.	.	Alu	0.181818
12	62502357	A->G	+	ENSG00000061987	MON2	protein_coding	Intergenic	.	.	Alu	0.2
17	62518585	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.3
17	62591198	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.3
18	62727494	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.136364
18	62727561	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.136364
18	62727565	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.0952381
11	62819818	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.153846
11	62819831	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.133333
11	62820589	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.153846
11	62820653	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.153846
11	62820694	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.181818
11	62822280	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.307692
11	62822281	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.153846
11	62823197	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.0588235
11	62823205	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.0689655
11	62823208	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.12
11	62823210	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.0666667
11	62823272	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.380952
11	62823273	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.391304
11	62823277	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.0909091
18	62873951	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.3
18	62874001	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.181818
18	62874064	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.454545
11	62887582	A->G	+	ENSG00000168003	SLC3A2	protein_coding	Intergenic	.	.	Alu	0.214286
11	62887588	A->G	+	ENSG00000168003	SLC3A2	protein_coding	Intergenic	.	.	Alu	0.333333
11	62887623	A->G	+	ENSG00000168003	SLC3A2	protein_coding	Intergenic	.	.	Alu	0.2
8	63195914	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.214286
8	63195941	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.2
8	63196307	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.206897
8	63196397	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.0740741
8	63196441	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.0555556
8	63196468	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.0666667
8	63196477	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.0540541
15	63229634	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.3
10	63250052	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.0909091
10	63250072	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.0909091
10	63250082	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.0952381
10	63250104	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.0833333
10	63250133	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.0952381
10	63250184	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.133333
10	63250244	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.357143
10	63250267	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.176471
10	63250276	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.357143
10	63254932	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.0526316
18	63277506	A->G	-	ENSG00000171791	BCL2	protein_coding	Intergenic	.	.	Alu	0.2
10	63292067	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.9
10	63338734	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.2
10	63446024	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.166667
10	63446036	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.2
10	63490484	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.157895
10	63490586	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.111111
10	63493329	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.1
10	63493354	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.105263
10	63493358	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.125
10	63493359	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.176471
10	63493446	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.111111
10	63493490	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.125
10	63493533	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.272727
10	63510075	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.181818
10	63510284	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.6
14	63519453	A->G	-	ENSG00000154001	PPP2R5E	protein_coding	Intergenic	.	.	Alu	0.3
14	63530724	A->G	-	ENSG00000154001	PPP2R5E	protein_coding	Intergenic	.	.	Alu	0.0909091
15	63545701	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.6
15	63545714	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.266667
15	63545715	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.3125
15	63545762	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.125
15	63545793	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.222222
15	63545850	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	1
15	63545860	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.1
15	63545891	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.214286
15	63545896	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.266667
15	63545910	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.357143
15	63547458	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.259259
15	63547474	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0789474
15	63547475	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.108108
15	63547491	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.209302
15	63547520	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0540541
15	63547538	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0666667
15	63547548	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.137931
15	63547609	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.1
15	63547636	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.103448
15	63547650	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.08
15	63547655	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.269231
15	63547923	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0882353
15	63547963	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.075
15	63547979	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0392157
15	63548031	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	1
15	63548071	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0666667
15	63548158	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.833333
15	63548194	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.115385
15	63548224	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.111111
15	63548229	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.176471
15	63548230	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.529412
15	63548283	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.25
15	63548773	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63548833	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.230769
17	63557438	A->G	+	ENSG00000136485	DCAF7	protein_coding	Intergenic	.	.	Alu	0.153846
12	63588850	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.235294
12	63588851	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.25
12	63588882	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.210526
12	63588892	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.117647
12	63588918	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.3125
12	63588925	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.133333
12	63588982	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.384615
12	63589048	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.5
20	63613030	A->G	-	ENSG00000101216	GMEB2	protein_coding	Intergenic	.	.	Alu	0.166667
15	63675934	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.111111
15	63675936	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.166667
15	63676015	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.416667
15	63676058	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.357143
15	63676064	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.636364
11	63686783	A->G	+	ENSG00000133318	RTN3	protein_coding	Intergenic	.	.	Alu	0.2
14	63714982	A->G	-	ENSG00000126821	SGPP1	protein_coding	Intergenic	.	.	Alu	0.214286
15	63720196	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.1875
15	63720255	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.2
17	63724322	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.363636
17	63724338	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.166667
17	63724339	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.142857
17	63725064	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.272727
17	63725531	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.285714
17	63725545	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.166667
17	63725546	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.153846
15	63739392	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.166667
15	63739393	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.416667
15	63739755	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.454545
15	63787024	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	63789541	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.111111
15	63789615	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.5
15	63803561	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.105263
15	63806269	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.4
17	63840420	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.7
17	63840438	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.142857
17	63840453	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.692308
17	63840455	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.230769
3	63866368	A->G	+	ENSG00000285258	ATXN7	protein_coding	Intergenic	.	.	Alu	0.181818
3	63923760	A->G	+	ENSG00000285258	ATXN7	protein_coding	Intergenic	.	.	Alu	0.2
2	63953253	A->G	-	ENSG00000143952	VPS54	protein_coding	Intergenic	.	.	Alu	0.125
14	63967030	A->G	-	ENSG00000054654	SYNE2	protein_coding	Intergenic	.	.	Alu	1
15	64098432	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.111111
15	64098439	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	64098455	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.125
15	64098466	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.2
15	64098522	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.111111
15	64098610	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0645161
15	64098611	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.193548
15	64098622	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	64099756	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.545455
15	64099861	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.3
15	64099886	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.4
15	64100324	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.170732
15	64100330	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0487805
15	64100352	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.106383
15	64100355	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0697674
15	64100390	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.129032
15	64100414	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	64100423	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.136364
15	64100424	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	64100435	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.12
15	64100438	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.12
15	64100453	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.333333
15	64100480	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.230769
15	64100485	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0833333
15	64100506	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.15
15	64100507	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	64100546	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.125
15	64108894	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.117647
15	64108909	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.1
15	64108963	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.133333
15	64109175	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0666667
15	64109187	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.285714
15	64109193	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	64109206	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0833333
15	64109209	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.125
15	64109252	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.478261
2	64139403	A->G	-	ENSG00000197329	PELI1	protein_coding	Intergenic	.	.	Alu	0.25
2	64139404	A->G	-	ENSG00000197329	PELI1	protein_coding	Intergenic	.	.	Alu	0.454545
2	64139568	A->G	-	ENSG00000197329	PELI1	protein_coding	Intergenic	.	.	Alu	0.416667
11	64187858	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.3125
11	64187894	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.357143
11	64188488	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.133333
12	64460574	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.148148
12	64460657	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.15
12	64460766	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.08
12	64463312	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.666667
12	64463430	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.333333
12	64463449	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	64465002	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64468947	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.153846
15	64468970	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.142857
15	64468983	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.1875
15	64468993	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.294118
14	64519753	A->G	+	ENSG00000126804	ZBTB1	protein_coding	Intergenic	.	.	Alu	0.363636
14	64519757	A->G	+	ENSG00000126804	ZBTB1	protein_coding	Intergenic	.	.	Alu	0.181818
2	64547802	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.3
2	64547886	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.2
12	64626280	A->G	+	ENSG00000153179	RASSF3	protein_coding	Intergenic	.	.	Alu	0.272727
17	64646203	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.3
17	64646481	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.105263
17	64646576	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.133333
17	64646577	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.214286
17	64646606	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.181818
17	64650287	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.15
17	64650296	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.47619
17	64650309	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.176471
17	64650310	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.125
17	64655354	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.0909091
17	64655366	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.25
17	64655367	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.0869565
17	64655395	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.411765
17	64655396	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.222222
17	64655402	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.3125
17	64655422	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.166667
17	64655461	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.142857
17	64655471	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.117647
17	64655490	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.176471
17	64655491	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.235294
17	64655531	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.133333
7	64699902	A->G	+	ENSG00000196247	ZNF107	protein_coding	Intergenic	.	.	Alu	0.461538
7	64699907	A->G	+	ENSG00000196247	ZNF107	protein_coding	Intergenic	.	.	Alu	0.166667
7	64699995	A->G	+	ENSG00000196247	ZNF107	protein_coding	Intergenic	.	.	Alu	1
5	64756678	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.0625
5	64756699	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.227273
5	64758005	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.0512821
5	64758096	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.153846
11	64795216	A->G	-	ENSG00000168067	MAP4K2	protein_coding	Intergenic	.	.	Alu	0.142857
11	64795222	A->G	-	ENSG00000168067	MAP4K2	protein_coding	Intergenic	.	.	Alu	0.142857
11	64795311	A->G	-	ENSG00000168067	MAP4K2	protein_coding	Intergenic	.	.	Alu	0.272727
11	64795357	A->G	-	ENSG00000168067	MAP4K2	protein_coding	Intergenic	.	.	Alu	0.454545
7	64916434	A->G	+	ENSG00000198039	ZNF273	protein_coding	Intergenic	.	.	Alu	0.166667
7	64916448	A->G	+	ENSG00000198039	ZNF273	protein_coding	Intergenic	.	.	Alu	0.230769
1	64940413	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.2
1	64940477	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.2
1	64940505	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.153846
1	64940510	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.166667
1	64940930	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.25
1	64940939	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.166667
1	64941015	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.2
1	64941016	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.2
1	64951894	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.111111
1	64951913	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.133333
15	64956425	A->G	-	ENSG00000166839	ANKDD1A	protein_coding	Intergenic	.	.	Alu	0.6
15	64956441	A->G	-	ENSG00000166839	ANKDD1A	protein_coding	Intergenic	.	.	Alu	0.166667
15	64982308	A->G	-	ENSG00000090487	SPG21	protein_coding	Intergenic	.	.	Alu	0.2
15	65014402	A->G	-	ENSG00000103707	MTFMT	protein_coding	Intergenic	.	.	Alu	0.2
14	65051431	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.2
14	65051489	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.7
14	65052090	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.25
14	65059120	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.25
14	65067656	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.142857
14	65067657	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.166667
14	65067715	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.409091
14	65067720	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.363636
14	65067746	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.285714
14	65067865	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.416667
14	65067866	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.363636
2	65077133	A->G	-	ENSG00000011523	CEP68	protein_coding	Intergenic	.	.	Alu	0.2
11	65101540	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.3
11	65101544	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.1875
11	65101646	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.285714
11	65101676	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.153846
11	65101684	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.133333
11	65101707	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.176471
2	65101943	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.153846
2	65101981	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.15
2	65125932	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.217391
2	65125934	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.363636
2	65125937	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.08
2	65127473	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.102564
2	65127475	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.243243
2	65127487	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.0606061
2	65127544	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.692308
2	65127604	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.227273
2	65127643	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.111111
2	65127866	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.375
2	65127872	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.466667
2	65127911	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.117647
2	65127913	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.117647
2	65127929	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.1
2	65128001	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.588235
2	65128006	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.263158
2	65128007	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.111111
15	65176656	A->G	-	ENSG00000166855	CLPX	protein_coding	Intergenic	.	.	Alu	0.230769
12	65286762	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.181818
12	65286783	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.153846
12	65286787	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.529412
12	65286806	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.111111
12	65286817	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.235294
12	65286874	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.181818
12	65286946	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.2
15	65541975	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.142857
15	65541976	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.307692
15	65542019	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.388889
15	65542020	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.368421
15	65542022	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.111111
15	65542108	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.214286
15	65542376	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.233333
15	65542390	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.0740741
15	65542397	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.423077
15	65542493	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.105263
15	65542507	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.357143
15	65542511	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.1
15	65542821	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.2
15	65707824	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.272727
15	65707850	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65707864	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.181818
15	65707865	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.181818
15	65708027	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65708129	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.09375
15	65708135	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.25
15	65708234	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65718917	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.1
15	65719007	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.307692
15	65719026	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.142857
15	65719030	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.142857
8	65729596	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.263158
8	65729624	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.176471
8	65729649	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.210526
8	65729674	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.111111
8	65729687	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.142857
8	65729782	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.222222
8	65730235	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.25
8	65730283	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.428571
8	65730286	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.266667
8	65730345	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.25
8	65730348	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.5
8	65730350	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.363636
8	65730355	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	65730356	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.4
8	65730459	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.3125
15	65736326	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.153846
15	65736467	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
8	65736656	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.8
8	65736669	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.363636
8	65736905	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.3
15	65746538	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.5
15	65746632	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.230769
15	65754076	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
11	65974467	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.136364
11	65974572	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.136364
11	65974600	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.111111
11	65974857	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.166667
7	65981118	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.18
7	65981128	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.0416667
7	65981143	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.166667
7	65981155	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.145833
7	65981343	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.0909091
5	66089836	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
5	66096143	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
5	66149170	A->G	+	ENSG00000153914	SREK1	protein_coding	Intergenic	.	.	Alu	0.35
7	66158930	A->G	+	ENSG00000234185	AC068533.3	antisense	Intergenic	.	.	Alu	0.1
7	66158956	A->G	+	ENSG00000234185	AC068533.3	antisense	Intergenic	.	.	Alu	0.208333
12	66202517	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.166667
9	66290802	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
15	66298085	A->G	+	ENSG00000166938	DIS3L	protein_coding	Intergenic	.	.	Alu	0.25
15	66298089	A->G	+	ENSG00000166938	DIS3L	protein_coding	Intergenic	.	.	Alu	0.2
7	66388227	A->G	-	ENSG00000169902	TPST1	protein_coding	Intergenic	.	.	Alu	0.5
3	66474422	A->G	-	ENSG00000144749	LRIG1	protein_coding	Intergenic	.	.	Alu	0.153846
11	66629807	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.121212
11	66629814	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0857143
11	66629848	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0571429
11	66629960	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0652174
11	66629984	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.148936
11	66629988	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.12
11	66635027	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.38961
11	66635032	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.025641
11	66635045	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0394737
11	66635087	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.039604
11	66635088	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0582524
11	66635105	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.690476
11	66635117	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.092437
11	66635133	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0373832
11	66635154	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.241935
11	66635167	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.15873
11	66635170	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0980392
11	66635172	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0612245
11	66635187	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0508475
11	66635239	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0444444
11	66635248	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.217391
11	66635249	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.266667
11	66635261	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.660377
11	66635263	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.207547
11	66635353	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.448276
11	66635360	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.692308
11	66635414	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.020202
11	66635423	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.12963
11	66635424	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.443396
11	66635425	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.447619
11	66635436	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.116667
11	66635440	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.02
11	66635451	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0384615
11	66635454	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0705882
11	66635466	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.02
11	66635467	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.17
11	66635481	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0353982
11	66635490	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0353982
11	66635494	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0892857
11	66635503	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0294118
11	66635521	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0813953
11	66635569	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0588235
11	66635643	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.097561
11	66635644	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.102273
11	66635650	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.336957
11	66635659	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0630631
11	66635692	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.07
11	66635720	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.113208
11	66635740	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.026087
11	66635749	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.047619
11	66635750	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0280374
11	66635754	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0677966
11	66635772	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0789474
11	66635774	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.12931
11	66636065	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0540541
11	66636110	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0789474
11	66636139	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0857143
11	66636149	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.365854
11	66636175	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0689655
11	66636193	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.264706
11	66636213	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.291667
11	66636413	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.285714
11	66636419	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.1
11	66657498	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.153846
11	66657505	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.153846
11	66657506	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.333333
11	66657517	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.153846
11	66657536	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.230769
11	66657556	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.363636
7	66659603	A->G	+	ENSG00000226824	AC006001.2	sense_intronic	Intergenic	.	.	Alu	0.166667
7	66659604	A->G	+	ENSG00000226824	AC006001.2	sense_intronic	Intergenic	.	.	Alu	0.166667
11	66670728	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.142857
11	66670749	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.166667
11	66670765	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.333333
11	66671929	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.363636
11	66671946	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.285714
11	66671963	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.4
11	66672009	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.133333
11	66672010	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.133333
11	66672138	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.714286
11	66672145	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.176471
11	66672151	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.411765
11	66672152	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.411765
11	66672199	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.0869565
11	66672211	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.142857
11	66672221	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.125
11	66672229	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.363636
11	66672230	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.25
11	66672231	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.25
11	66672281	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.4
11	66672289	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.3125
11	66672295	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.333333
11	66672299	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.2
11	66672307	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.25
11	66672319	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.166667
11	66672325	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.25
11	66672331	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.235294
11	66672355	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.15
11	66672360	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.105263
11	66672385	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.153846
11	66672599	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.2
11	66672600	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.3
11	66672613	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.214286
11	66672625	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.2
11	66672771	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.25
7	66709763	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.142857
16	66738346	A->G	-	ENSG00000135720	DYNC1LI2	protein_coding	Intergenic	.	.	Alu	0.2
16	66738347	A->G	-	ENSG00000135720	DYNC1LI2	protein_coding	Intergenic	.	.	Alu	0.333333
16	66738380	A->G	-	ENSG00000135720	DYNC1LI2	protein_coding	Intergenic	.	.	Alu	0.125
7	66741883	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.5625
7	66741888	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.1875
7	66741948	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.153846
7	66742036	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.114286
7	66742057	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.0666667
7	66742719	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.230769
7	66742724	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.142857
7	66742740	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.461538
7	66742741	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.615385
7	66743055	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.230769
7	66743146	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.277778
7	66743147	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.117647
7	66743148	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.117647
7	66743157	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.111111
7	66743187	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.16
7	66743192	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.0952381
7	66743196	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.235294
7	66743200	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.608696
7	66743213	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.181818
7	66743386	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.0833333
7	66743425	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.1
7	66743763	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.416667
7	66744609	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.272727
7	66744938	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.454545
7	66744943	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.166667
7	66755274	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.2
16	66815501	A->G	-	ENSG00000159593	NAE1	protein_coding	Intergenic	.	.	Alu	0.3
8	66828045	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.2
1	66936297	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.4
1	66936303	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.15
1	66936323	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.117647
1	66936337	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.263158
1	66936345	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.133333
1	66936349	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.181818
1	66936413	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.266667
1	66936466	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	66936494	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.166667
1	66936495	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.277778
1	66936501	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.578947
1	66936507	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.297297
1	66936737	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0789474
1	66936745	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.1
1	66936746	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.309524
1	66936751	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.25
1	66936784	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.129032
1	66936789	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.472222
1	66936792	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.157895
1	66936813	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.243902
1	66936824	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.666667
1	66936872	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.666667
1	66936878	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.8
1	66936919	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.666667
1	66936926	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.075
1	66936927	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.666667
1	66936944	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0487805
1	66937331	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	66937339	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	66937353	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.178571
1	66937377	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	66937464	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.128205
1	66937465	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.102564
1	66937487	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	66937505	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.133333
1	66937530	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0377358
1	66937535	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.245283
1	66941722	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.111111
1	66941724	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.111111
1	66941787	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0666667
14	67010393	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.166667
14	67010395	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.333333
14	67010458	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.285714
14	67010460	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.153846
14	67010461	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.25
14	67011489	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.333333
14	67011499	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.285714
16	67066279	A->G	+	ENSG00000067955	CBFB	protein_coding	Intergenic	.	.	Alu	0.272727
11	67125659	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.333333
11	67126031	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.166667
11	67126060	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.363636
11	67126061	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.363636
8	67151861	A->G	+	ENSG00000104218	CSPP1	protein_coding	Intergenic	.	.	Alu	0.4
11	67156137	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.2
11	67187774	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.4
11	67187783	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.3
11	67187835	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.25
11	67188688	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.235294
8	67192212	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.117647
17	67195948	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.125
17	67195963	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.115385
17	67195989	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.16
17	67195990	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.16
17	67196045	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.115385
17	67196111	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.375
17	67196125	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.117647
17	67196127	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.111111
11	67201688	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.166667
11	67201689	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.133333
17	67207050	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.2
11	67295505	A->G	+	ENSG00000172932	ANKRD13D	protein_coding	Intergenic	.	.	Alu	0.3
11	67295589	A->G	+	ENSG00000172932	ANKRD13D	protein_coding	Intergenic	.	.	Alu	0.25
11	67295593	A->G	+	ENSG00000172932	ANKRD13D	protein_coding	Intergenic	.	.	Alu	0.307692
7	67304232	A->G	-	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.272727
7	67312533	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	67312534	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.363636
7	67312586	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.133333
7	67312595	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	67312617	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
8	67327378	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.142857
8	67327383	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.133333
8	67335238	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.1
17	67351837	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.125
17	67351965	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.454545
17	67351969	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.454545
17	67351973	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.166667
17	67352014	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.181818
17	67352200	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.153846
17	67352216	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.272727
17	67353396	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.181818
17	67353404	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.333333
17	67353405	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.3
17	67353432	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.615385
17	67353436	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.166667
17	67353468	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.307692
17	67354862	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.25
17	67354868	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.111111
17	67354882	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.08
17	67354908	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.137931
17	67354927	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.121212
17	67354943	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.366667
17	67354946	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.137931
17	67354986	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.1
17	67355178	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0909091
17	67355220	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.030303
17	67355229	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.190476
17	67355230	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.209677
17	67355240	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.166667
17	67355246	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.27907
17	67355265	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0652174
17	67355268	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0416667
17	67355305	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0697674
17	67355308	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0392157
17	67355324	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0517241
1	67417574	A->G	-	ENSG00000142864	SERBP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	67417608	A->G	-	ENSG00000142864	SERBP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	67417613	A->G	-	ENSG00000142864	SERBP1	protein_coding	Intergenic	.	.	Alu	0.461538
4	67527639	A->G	-	ENSG00000145241	CENPC	protein_coding	Intergenic	.	.	Alu	0.0350877
4	67527641	A->G	-	ENSG00000145241	CENPC	protein_coding	Intergenic	.	.	Alu	0.0350877
16	67565565	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.3
16	67565594	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.166667
16	67565601	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.272727
16	67566242	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.315789
16	67566248	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.421053
16	67566249	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.388889
16	67566317	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.263158
16	67566318	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.210526
16	67566348	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.483871
16	67566350	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0666667
16	67566351	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.16129
16	67566352	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0625
16	67566357	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.176471
16	67566403	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0909091
16	67566430	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.105263
16	67566459	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.1
16	67566676	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0408163
16	67566681	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0943396
16	67566721	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0454545
16	67566746	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.111111
16	67566761	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.48
16	67566778	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.105263
16	67566786	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.571429
16	67566790	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0967742
16	67566833	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.2
16	67566845	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.25
16	67566945	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.181818
16	67567042	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.190476
16	67567076	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0869565
16	67567116	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0769231
16	67590771	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.2
14	67672257	A->G	-	ENSG00000100568	VTI1B	protein_coding	Intergenic	.	.	Alu	0.2
17	67876550	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.2
17	67876551	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.3
17	67876620	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.25
17	67876685	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.5
17	67876686	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.2
17	67876695	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.307692
17	67883058	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.272727
17	67883103	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.181818
10	67890667	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.181818
10	67890675	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.166667
10	67890769	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.210526
10	67890845	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.222222
10	67890919	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.142857
10	67890950	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.117647
10	67890969	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.235294
10	67896687	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.285714
17	67897054	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.166667
17	67897073	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.153846
17	67897078	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.2
17	67897103	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.15
17	67897220	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.3
17	67897221	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.6
17	67897226	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.4
17	67898276	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.0952381
14	68045138	A->G	+	ENSG00000182185	RAD51B	protein_coding	Intergenic	.	.	Alu	0.166667
15	68059839	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.222222
15	68059840	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.444444
11	68093201	A->G	-	ENSG00000110721	CHKA	protein_coding	Intergenic	.	.	Alu	0.153846
11	68093216	A->G	-	ENSG00000110721	CHKA	protein_coding	Intergenic	.	.	Alu	0.307692
11	68093217	A->G	-	ENSG00000110721	CHKA	protein_coding	Intergenic	.	.	Alu	0.307692
15	68137991	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.2
11	68167546	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.181818
11	68167547	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.272727
11	68167579	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.3
11	68167595	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	1
11	68167637	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.25
11	68168090	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.2
11	68168100	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.2
11	68168113	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.181818
2	68173668	A->G	-	ENSG00000115946	PNO1	protein_coding	Intergenic	.	.	Alu	0.2
2	68202458	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
2	68202497	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.142857
2	68202563	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.1
2	68202900	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
2	68202941	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.136364
11	68204659	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.2
11	68204712	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.444444
11	68204749	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.272727
11	68204754	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.636364
11	68204755	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.190476
11	68204818	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.133333
2	68205328	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
2	68205380	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.15
2	68205381	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.1
2	68205399	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.117647
2	68205508	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.133333
2	68205509	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.133333
2	68205531	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.133333
2	68245114	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.2
2	68245179	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.5
2	68245188	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.166667
2	68245240	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.307692
2	68245245	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.142857
2	68246142	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0645161
2	68246171	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0967742
2	68246177	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	68246183	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0714286
2	68246186	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.103448
2	68246199	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.136364
2	68246212	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.238095
2	68246213	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.190476
2	68246239	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.296296
2	68246243	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.113636
2	68246245	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.04
2	68246291	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.075
2	68246295	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.268293
2	68246345	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.552632
2	68246346	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.307692
2	68246354	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.05
10	68460360	A->G	-	ENSG00000138346	DNA2	protein_coding	Intergenic	.	.	Alu	0.181818
11	68471138	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.105263
11	68471163	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	68471181	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	68482161	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.25
11	68485915	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.230769
11	68485936	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.909091
11	68485937	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	1
11	68486448	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.125
11	68486458	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.133333
11	68486484	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.3
11	68493723	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.3
11	68493988	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.243243
11	68494271	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.125
10	68497754	A->G	-	ENSG00000122912	SLC25A16	protein_coding	Intergenic	.	.	Alu	0.466667
10	68497888	A->G	-	ENSG00000122912	SLC25A16	protein_coding	Intergenic	.	.	Alu	0.272727
11	68517853	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.153846
11	68533594	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.416667
11	68533607	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.153846
11	68533620	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.357143
11	68533646	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.117647
11	68533654	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.230769
12	68613100	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0384615
12	68613150	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0652174
12	68613151	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0697674
12	68623751	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.3
12	68623767	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.105263
12	68623768	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.105263
12	68636901	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.133333
12	68636934	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.285714
12	68637365	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0952381
12	68637401	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.179487
12	68637422	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.047619
12	68637433	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	1
12	68637436	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.138889
12	68637437	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0857143
12	68637438	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.111111
12	68637442	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0769231
12	68637450	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.162162
12	68637454	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.147059
12	68637466	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.114286
12	68637476	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.2
12	68637477	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.230769
12	68637482	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.1
12	68637512	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.171429
12	68637517	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.424242
12	68637518	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.333333
12	68637587	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.333333
12	68637588	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.352941
12	68637589	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.117647
12	68637590	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.125
12	68637595	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.166667
10	68760614	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.2
10	68760652	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.111111
10	68760666	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.388889
10	68760668	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.166667
10	68760671	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.285714
10	68760677	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.15
10	68760680	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	1
10	68760681	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	1
10	68760743	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.4
10	68760744	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.3
10	68764498	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.166667
11	68769352	A->G	-	ENSG00000110090	CPT1A	protein_coding	Intergenic	.	.	Alu	0.2
11	68769353	A->G	-	ENSG00000110090	CPT1A	protein_coding	Intergenic	.	.	Alu	0.3
11	68769375	A->G	-	ENSG00000110090	CPT1A	protein_coding	Intergenic	.	.	Alu	0.25
10	68769826	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.153846
12	68829607	A->G	+	ENSG00000135679	MDM2	protein_coding	Intergenic	.	.	Alu	0.2
12	68832872	A->G	+	ENSG00000135679	MDM2	protein_coding	Intergenic	.	.	Alu	0.0869565
10	68920846	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.181818
10	68920847	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.272727
10	68975660	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.2
10	68975683	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.2
10	68975886	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.5
10	68975926	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.2
10	68975928	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.181818
10	68976093	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.3
10	68976144	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.153846
10	68976152	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.333333
3	69076695	A->G	-	ENSG00000144744	UBA3	protein_coding	Intergenic	.	.	Alu	0.315789
3	69076699	A->G	-	ENSG00000144744	UBA3	protein_coding	Intergenic	.	.	Alu	0.1
3	69076792	A->G	-	ENSG00000144744	UBA3	protein_coding	Intergenic	.	.	Alu	0.166667
11	69091067	A->G	+	ENSG00000162341	TPCN2	protein_coding	Intergenic	.	.	Alu	0.307692
10	69095169	A->G	+	ENSG00000122862	SRGN	protein_coding	Intergenic	.	.	Alu	0.5
5	69125718	A->G	+	ENSG00000145740	SLC30A5	protein_coding	Intergenic	.	.	Alu	0.181818
10	69151397	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.153846
10	69151409	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.142857
3	69215390	A->G	-	ENSG00000114541	FRMD4B	protein_coding	Intergenic	.	.	Alu	0.384615
12	69244997	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.0357143
12	69250747	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.0888889
12	69250764	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.0434783
12	69250821	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.0327869
3	69262538	A->G	-	ENSG00000114541	FRMD4B	protein_coding	Intergenic	.	.	Alu	0.181818
3	69263911	A->G	-	ENSG00000114541	FRMD4B	protein_coding	Intergenic	.	.	Alu	0.2
16	69323797	A->G	+	ENSG00000132612	VPS4A	protein_coding	Intergenic	.	.	Alu	0.181818
5	69361742	A->G	-	ENSG00000085231	AK6	protein_coding	Intergenic	.	.	Alu	0.3
5	69361743	A->G	-	ENSG00000085231	AK6	protein_coding	Intergenic	.	.	Alu	0.2
2	69371261	A->G	-	ENSG00000198380	GFPT1	protein_coding	Intergenic	.	.	Alu	0.2
12	69540132	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	69545494	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.181818
12	69545541	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.363636
12	69545546	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.4
12	69545570	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.125
12	69545572	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.142857
12	69545598	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.133333
12	69545610	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.153846
12	69545626	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.25
12	69545637	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.352941
12	69545681	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.2
16	69571193	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.0606061
16	69571253	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.133333
16	69571259	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.0882353
16	69598257	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.272727
16	69598281	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.142857
16	69598284	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.1875
14	69619576	A->G	+	ENSG00000100647	SUSD6	protein_coding	Intergenic	.	.	Alu	0.2
16	69634194	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.0645161
16	69642947	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.0666667
16	69687320	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.230769
16	69687353	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.166667
16	69809674	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.166667
2	69858892	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.375
2	69858893	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.1875
2	69858936	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.133333
2	69858956	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.166667
2	69859026	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.266667
2	69859048	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.125
2	69859052	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.375
2	69859092	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.133333
2	69859542	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.1875
7	69921841	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.153846
7	69921910	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.3
7	69921944	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.214286
2	69928766	A->G	+	ENSG00000059728	MXD1	protein_coding	Intergenic	.	.	Alu	0.111111
2	69928785	A->G	+	ENSG00000059728	MXD1	protein_coding	Intergenic	.	.	Alu	0.4
2	69928790	A->G	+	ENSG00000059728	MXD1	protein_coding	Intergenic	.	.	Alu	0.5
7	69984242	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.3
7	69984243	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.2
7	69985111	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.181818
16	69995493	A->G	-	ENSG00000226232	NPIPB14P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.266667
16	69995499	A->G	-	ENSG00000226232	NPIPB14P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
16	69999929	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.181818
16	70009822	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.3
16	70010040	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.6
16	70010389	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.25
16	70010409	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.25
7	70096528	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.181818
X	70137855	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.115385
X	70137877	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.111111
X	70137878	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.192308
X	70137904	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.2
X	70137931	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.461538
X	70137937	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.0740741
X	70137947	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.130435
X	70138015	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.125
X	70138016	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.08
X	70138056	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.333333
X	70138247	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.133333
X	70138290	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.166667
X	70138295	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.111111
X	70138366	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.277778
7	70156821	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.5
7	70156830	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.272727
7	70156838	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.538462
7	70156956	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.3
7	70167016	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.2
7	70173239	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.2
7	70173289	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.111111
1	70183676	A->G	-	ENSG00000066557	LRRC40	protein_coding	Intergenic	.	.	Alu	0.2
7	70207864	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.1875
7	70207891	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.117647
7	70207896	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.176471
7	70211528	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.25
2	70217360	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.08
2	70219544	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.111111
2	70219563	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.214286
2	70219574	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.117647
2	70219596	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.363636
2	70219599	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.347826
2	70219850	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.272727
2	70219852	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.5
2	70219869	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.136364
2	70236445	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.3
2	70238117	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.2
2	70238368	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.2
2	70238382	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.692308
2	70238455	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.153846
2	70245991	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.176471
2	70245996	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.105263
2	70246061	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.117647
2	70246161	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.2
12	70283447	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.25
16	70348838	A->G	+	ENSG00000260537	AC012184.2	protein_coding	Intergenic	.	.	Alu	0.2
10	70413403	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.125
10	70414981	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.117647
10	70416485	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.3
7	70439352	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.142857
7	70439356	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.142857
7	70440125	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.583333
7	70440126	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.818182
7	70440131	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.166667
7	70440134	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.538462
7	70440138	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.214286
7	70440183	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.318182
7	70440301	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.176471
7	70440310	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.125
7	70440314	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.352941
7	70440342	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.384615
7	70440350	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.333333
4	70716380	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.363636
4	70716381	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.25
4	70716389	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.25
4	70716398	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.5
7	70728494	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.3
7	70728499	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.2
4	70923694	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.153846
4	70923695	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.142857
4	70923700	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.125
14	70923969	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.2
14	70924066	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.153846
14	70924098	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.454545
14	70924101	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.181818
4	70926876	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.181818
4	70926903	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.153846
4	70965096	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.181818
4	70965612	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.117647
X	71057789	A->G	-	ENSG00000147164	SNX12	protein_coding	Intergenic	.	.	Alu	0.318182
X	71057946	A->G	-	ENSG00000147164	SNX12	protein_coding	Intergenic	.	.	Alu	0.166667
3	71085287	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71085291	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71085351	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71085353	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.7
3	71085430	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.5
X	71138660	A->G	+	ENSG00000184634	MED12	protein_coding	Intergenic	.	.	Alu	0.166667
3	71233551	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71233635	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.166667
3	71263982	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.230769
3	71267890	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0666667
3	71267894	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0681818
3	71267906	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0555556
3	71267908	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0588235
3	71267918	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.129032
3	71267935	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.138889
3	71267936	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	71267941	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.24
3	71267942	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.36
3	71267961	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.103448
3	71267966	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.592593
3	71267982	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.357143
3	71267987	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.153846
3	71268187	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.916667
3	71268188	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.818182
3	71268229	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.12
3	71268231	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.291667
3	71268255	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.148148
3	71276992	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.0769231
3	71277056	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.12
3	71277097	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.171429
3	71277123	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.130435
3	71277163	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.3125
3	71277164	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.0909091
3	71277208	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.162162
3	71278615	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.153846
3	71278618	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.111111
5	71281662	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
5	71281666	A->G	-	.	.	.	Intergenic	.	.	Alu	0.357143
5	71281675	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
5	71281676	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
3	71291977	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.153846
X	71295551	A->G	+	ENSG00000147140	NONO	protein_coding	Intergenic	.	.	Alu	0.2
3	71312869	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.583333
3	71312896	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.25
2	71336255	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.105263
2	71336291	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.192308
3	71343639	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.142857
3	71343648	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.4
3	71343652	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.307692
3	71343653	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.583333
3	71343708	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.888889
3	71343709	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.823529
3	71343710	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.333333
3	71343761	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0740741
3	71343771	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.107143
3	71343801	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.789474
3	71343802	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.789474
14	71356515	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.153846
3	71371694	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.5
3	71371707	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.384615
3	71372089	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.5
3	71372109	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.454545
3	71372124	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.25
14	71373354	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.181818
14	71373504	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71381647	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
2	71386219	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.0967742
14	71403345	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.153846
3	71404330	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71404391	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.529412
3	71404394	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.3125
3	71404399	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.117647
3	71404400	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.117647
X	71431789	A->G	+	ENSG00000147133	TAF1	protein_coding	Intergenic	.	.	Alu	0.333333
X	71431795	A->G	+	ENSG00000147133	TAF1	protein_coding	Intergenic	.	.	Alu	0.181818
14	71440050	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.95
14	71440054	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.2
14	71440090	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0833333
14	71440095	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.391304
14	71440105	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.333333
14	71440106	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.705882
14	71440202	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0740741
14	71440207	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0909091
14	71440210	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.681818
14	71440288	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.363636
14	71440289	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.666667
14	71440295	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	1
14	71440381	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.6
14	71440433	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.636364
14	71440443	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71440446	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.25
14	71440498	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.3
14	71440499	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0512821
14	71440500	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.153846
14	71440528	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.377778
14	71440542	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0434783
14	71440563	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.542857
14	71440569	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.115385
14	71441916	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.125
14	71441922	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71441952	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.166667
14	71442023	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.133333
14	71453739	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.166667
14	71453803	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.666667
14	71453808	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.526316
14	71453832	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.294118
14	71453874	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.125
14	71453890	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.25
14	71453896	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.173913
14	71453900	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0833333
14	71453915	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.105263
14	71453927	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.227273
14	71453928	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0909091
14	71453929	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.478261
14	71453940	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.115385
14	71480575	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.545455
14	71480576	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.7
14	71480597	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.285714
14	71480600	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71480641	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.272727
14	71480642	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.181818
14	71480668	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.2
14	71480687	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.333333
3	71483039	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71495973	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.416667
5	71546567	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.4
5	71546568	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.3
5	71546603	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.3
X	71549525	A->G	+	ENSG00000147162	OGT	protein_coding	Intergenic	.	.	Alu	0.0540541
X	71549643	A->G	+	ENSG00000147162	OGT	protein_coding	Intergenic	.	.	Alu	0.103448
3	71558591	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71558592	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71558606	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.214286
3	71558623	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.1
3	71558641	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.32
3	71558769	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.428571
3	71558775	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
5	71561990	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.153846
12	71621319	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.0571429
12	71658413	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.133333
12	71658421	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.214286
12	71658426	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.25
12	71658468	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.272727
12	71658508	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.272727
12	71661655	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.133333
12	71661685	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.25
12	71661686	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.454545
12	71661747	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.235294
3	71776560	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.272727
3	71776574	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.272727
12	71850525	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.3
12	71850530	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.272727
12	71850546	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.826087
12	71850552	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.5
12	71850554	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.416667
12	71850777	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.219512
12	71850780	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0454545
12	71850836	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0882353
12	71850837	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.09375
12	71850864	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	1
12	71850866	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.333333
12	71850872	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.171429
12	71850873	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0571429
12	71850888	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.241379
12	71850889	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.206897
12	71850893	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0689655
16	71896819	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.142857
16	71898602	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	71898890	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.0555556
16	71900123	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.166667
7	71979916	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.2
7	71979938	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.285714
7	71979969	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.181818
7	71980079	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.166667
7	71980225	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.5
7	71985461	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.5
7	71985701	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.181818
7	71985711	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.333333
7	72014219	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.2
7	72014225	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.2
11	72061563	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.230769
11	72061564	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.5
11	72061615	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.181818
11	72061763	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.384615
15	72352225	A->G	-	ENSG00000260729	AC009690.1	protein_coding	Intergenic	.	.	Alu	0.333333
15	72352230	A->G	-	ENSG00000260729	AC009690.1	protein_coding	Intergenic	.	.	Alu	0.181818
15	72366548	A->G	-	ENSG00000260729	AC009690.1	protein_coding	Intergenic	.	.	Alu	0.181818
3	72416418	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0689655
3	72416461	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.166667
3	72416657	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.5
3	72416692	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.185185
3	72416695	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0833333
3	72416696	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.130435
3	72416701	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.08
3	72416710	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.666667
3	72416754	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.117647
15	72483917	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.181818
15	72489061	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0526316
15	72489095	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0555556
15	72489121	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0322581
15	72489125	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0307692
15	72505830	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.16129
15	72505853	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.108696
15	72505862	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.05
15	72505865	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.117647
15	72505916	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.05
15	72505936	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.2
15	72505995	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.107143
15	72505999	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.24
15	72506161	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0833333
15	72506170	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0434783
15	72506171	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.113636
15	72506229	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.118644
15	72506243	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.709091
15	72506292	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.269231
15	72510557	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.235294
15	72510567	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	72510590	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	72510616	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.263158
15	72510622	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.105263
15	72510658	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.08
15	72510697	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.142857
15	72522243	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.5
15	72522252	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.176471
15	72522285	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.2
15	72522328	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.157895
15	72522337	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.222222
15	72522338	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.166667
15	72522394	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.321429
15	72522399	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0740741
15	72522417	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	72522430	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.16
15	72522441	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.142857
15	72575000	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.166667
15	72575018	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.25
15	72575032	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.2
15	72575089	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.1
15	72575913	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.571429
15	72575931	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.181818
15	72575944	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.214286
17	72731951	A->G	-	ENSG00000133195	SLC39A11	protein_coding	Intergenic	.	.	Alu	0.2
15	72761960	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.166667
15	72763250	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.230769
15	72763267	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.142857
15	72763362	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.3
15	72763414	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.25
15	72763419	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.25
15	72763438	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.125
15	72763477	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.166667
6	72778411	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.470588
6	72778423	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.111111
6	72778427	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.1
6	72778480	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.133333
6	72778481	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.533333
15	72779341	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.08
15	72779345	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.15
15	72779373	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.222222
15	72779381	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.5
15	72779386	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.235294
15	72779387	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.285714
15	72779433	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.2
15	72779438	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.266667
15	72779446	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.6875
15	72779509	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.2
15	72779517	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.176471
15	72779518	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.294118
15	72779526	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.136364
5	72868273	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.0740741
5	72868275	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.0714286
5	72868311	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.666667
5	72868414	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.166667
5	72871044	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.4
5	72871070	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.153846
5	72871104	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.307692
5	72871116	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.133333
7	72981969	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	72981981	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
7	72982000	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	72994477	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.285714
7	72995649	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
7	72995656	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.230769
7	72995866	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	72995872	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	1
7	72995873	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.642857
7	72996916	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.1875
7	72996917	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.133333
7	72996930	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.222222
7	72996952	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	72996955	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.416667
3	73020549	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.470588
11	73053083	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	73053648	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.363636
3	73053655	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.166667
11	73058761	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0909091
11	73058814	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.142857
14	73069463	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.166667
14	73069470	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.333333
14	73070685	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.388889
14	73070711	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.125
14	73071111	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.2
14	73071131	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.25
14	73071148	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.3
14	73071151	A->G	+	ENSG00000119707	RBM25	protein_coding	Intergenic	.	.	Alu	0.153846
11	73097147	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.15
10	73116607	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.3
10	73116679	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.533333
10	73116711	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.7
10	73117010	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.1
10	73117014	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.142857
10	73117024	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.130435
10	73117111	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.166667
10	73127595	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.1
10	73127605	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.25
14	73137947	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.2
11	73138644	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0833333
11	73138732	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0833333
11	73138854	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.272727
10	73145864	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.111111
10	73145869	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.1875
10	73154730	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.25
10	73154745	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.5
10	73154767	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.272727
10	73155737	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.153846
10	73155738	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.153846
10	73155781	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.0869565
10	73155782	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.0952381
10	73155807	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.210526
10	73155808	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.263158
10	73155860	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.230769
10	73155883	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.214286
9	73157534	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.125
14	73162059	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.153846
6	73170724	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.272727
6	73170732	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.2
4	73189504	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.571429
4	73189521	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.5
4	73189535	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.73913
4	73189593	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.294118
4	73189598	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.411765
4	73189599	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.421053
4	73189607	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.411765
4	73189614	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.111111
4	73195612	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.3
4	73195647	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.454545
4	73196072	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.357143
4	73196108	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.1
4	73196137	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.611111
4	73196138	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.277778
4	73196141	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.285714
4	73196192	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.428571
4	73196193	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.190476
4	73196199	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.269231
4	73196206	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.52
4	73196265	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.125
4	73196270	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.375
4	73196271	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.375
4	73225671	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.272727
4	73226073	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.272727
4	73226096	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.3
4	73226104	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.181818
4	73226114	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.153846
4	73226180	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.416667
4	73226181	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.333333
4	73226221	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.526316
4	73226242	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.470588
4	73226486	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0555556
4	73226491	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.075
4	73226618	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.173913
4	73226665	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0857143
4	73226807	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.125
4	73226817	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.2
4	73226820	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.181818
4	73226826	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.181818
4	73240855	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.181818
4	73240947	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0909091
4	73240973	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.277778
4	73240976	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0909091
4	73240977	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.136364
4	73241030	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.4375
4	73241035	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.2
7	73281283	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
14	73286162	A->G	-	ENSG00000133961	NUMB	protein_coding	Intergenic	.	.	Alu	0.25
14	73353222	A->G	-	ENSG00000133961	NUMB	protein_coding	Intergenic	.	.	Alu	0.2
6	73442152	A->G	-	ENSG00000164430	CGAS	protein_coding	Intergenic	.	.	Alu	0.2
2	73457930	A->G	+	ENSG00000230002	ALMS1-IT1	sense_intronic	Intergenic	.	.	Alu	0.333333
10	73480577	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.0769231
10	73480638	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.105263
10	73480687	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.357143
10	73480695	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.153846
10	73480740	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.818182
10	73481254	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.8
6	73513976	A->G	-	.	.	.	Intergenic	.	.	Alu	0.416667
6	73513980	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
6	73514135	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	73514311	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
6	73514337	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
6	73514451	A->G	-	.	.	.	Intergenic	.	.	Alu	0.130435
6	73514497	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0625
6	73514594	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
6	73514596	A->G	-	.	.	.	Intergenic	.	.	Alu	0.121212
6	73514822	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0606061
6	73514837	A->G	-	.	.	.	Intergenic	.	.	Alu	0.129032
6	73514842	A->G	-	.	.	.	Intergenic	.	.	Alu	0.16
6	73514880	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
7	73515630	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.166667
7	73516047	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	1
7	73516265	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.5
7	73516267	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.470588
7	73516275	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.333333
7	73516279	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.117647
11	73574630	A->G	-	ENSG00000054965	FAM168A	protein_coding	Intergenic	.	.	Alu	0.333333
15	73610179	A->G	-	ENSG00000156642	NPTN	protein_coding	Intergenic	.	.	Alu	0.333333
15	73610183	A->G	-	ENSG00000156642	NPTN	protein_coding	Intergenic	.	.	Alu	0.2
7	73684302	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.538462
7	73684388	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.117647
7	73684761	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.576923
7	73684763	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.08
7	73684764	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.08
7	73684765	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.346154
7	73684803	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.470588
11	73693506	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.272727
6	73703947	A->G	+	ENSG00000156535	CD109	protein_coding	Intergenic	.	.	Alu	0.230769
10	73755422	A->G	+	ENSG00000176986	SEC24C	protein_coding	Intergenic	.	.	Alu	0.2
10	73755423	A->G	+	ENSG00000176986	SEC24C	protein_coding	Intergenic	.	.	Alu	0.2
11	73757282	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.117647
10	73757429	A->G	+	ENSG00000176986	SEC24C	protein_coding	Intergenic	.	.	Alu	0.5
10	73758058	A->G	+	ENSG00000176986	SEC24C	protein_coding	Intergenic	.	.	Alu	0.2
8	73855539	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.153846
8	73855566	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.133333
8	73872998	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.2
8	73873017	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.583333
8	73873029	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.307692
8	73873050	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.2
8	73873087	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.153846
8	73873091	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.6875
8	73873173	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.142857
8	73873181	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.230769
8	73873534	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.25
8	73873547	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.142857
11	73880757	A->G	+	ENSG00000175575	PAAF1	protein_coding	Intergenic	.	.	Alu	0.636364
X	73989748	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.153846
X	73989753	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.25
X	73989767	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.133333
X	73989770	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.142857
X	73989778	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.333333
X	73989831	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.25
X	73989840	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.133333
X	73989841	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.214286
X	73989846	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.375
X	73989874	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.111111
X	73989896	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.684211
X	73989897	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.666667
X	73989938	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.357143
X	73989943	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.533333
X	73990375	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.181818
X	73990376	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.181818
X	73990404	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.384615
X	73990406	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.153846
X	73990433	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.181818
X	73990447	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.133333
10	74011050	A->G	+	ENSG00000225761	AL596247.1	sense_intronic	Intergenic	.	.	Alu	0.166667
2	74052683	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.25
14	74086424	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.2
14	74086562	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.6
14	74086600	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.266667
14	74086637	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.210526
14	74086638	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.2
14	74086643	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.142857
10	74149422	A->G	-	ENSG00000185009	AP3M1	protein_coding	Intergenic	.	.	Alu	0.117647
7	74178053	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.6
7	74178318	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.346154
7	74178340	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.166667
7	74178342	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.166667
7	74178343	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.217391
7	74178413	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.333333
7	74178423	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.304348
7	74178450	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.210526
7	74178464	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.1
7	74178465	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.380952
10	74185947	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.210526
10	74185948	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.368421
10	74185977	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.117647
10	74185987	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.5
10	74204789	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.105263
10	74204815	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.157895
10	74204877	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.1875
10	74204880	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.1875
10	74204929	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.2
10	74205412	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.357143
10	74205420	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.266667
10	74205421	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.2
10	74205529	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.153846
10	74205555	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.25
10	74205556	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.3
10	74205582	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.111111
X	74208259	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.285714
X	74208284	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.388889
X	74223373	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
X	74223425	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.181818
X	74223524	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
X	74223557	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0909091
X	74223717	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
X	74223730	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0714286
X	74223788	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
X	74223799	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.105263
X	74223800	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.105263
X	74223833	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.181818
X	74225527	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.545455
X	74225531	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.272727
X	74265349	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
X	74265460	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.25
X	74265462	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.45
X	74265484	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.5
X	74265497	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.272727
X	74265501	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.2
X	74265502	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.333333
X	74265521	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.137931
X	74265939	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.363636
X	74265942	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.2
X	74265972	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.289474
X	74265977	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.361111
X	74265998	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.307692
X	74266004	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.4
X	74266012	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.106383
X	74266028	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.047619
X	74266034	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.193548
X	74266046	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0363636
X	74266054	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.189655
X	74266089	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
X	74266090	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.368421
X	74266093	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.508475
X	74266097	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.172414
X	74266098	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0350877
X	74266120	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.219512
X	74266121	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0487805
X	74266126	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0526316
X	74266131	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.102564
X	74266145	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.173913
X	74266150	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0697674
X	74266153	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.209302
X	74266158	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0425532
X	74266161	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0408163
X	74266166	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0952381
X	74266169	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.15
X	74266189	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0769231
X	74266266	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.285714
X	74266294	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.230769
X	74266299	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0869565
X	74266317	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.333333
X	74266318	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.571429
X	74266333	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0689655
X	74266339	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.454545
X	74266368	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
X	74266372	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0769231
X	74266390	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0625
X	74266394	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.133333
X	74266407	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.233333
X	74266408	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.16129
X	74266411	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.818182
X	74266444	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.172414
X	74266462	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.107143
X	74266463	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.275862
X	74266476	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.138889
X	74266479	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.075
X	74266484	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.305556
X	74266485	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.108108
X	74266507	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
16	74363266	A->G	-	ENSG00000214331	AC009053.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.130435
16	74365974	A->G	-	ENSG00000214331	AC009053.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
11	74395510	A->G	-	ENSG00000165434	PGM2L1	protein_coding	Intergenic	.	.	Alu	0.277778
X	74571990	A->G	-	.	.	.	Intergenic	.	.	Alu	0.384615
X	74571991	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
X	74571995	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
X	74571999	A->G	-	.	.	.	Intergenic	.	.	Alu	0.416667
X	74574883	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
10	74602054	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.2
16	74642255	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.142857
16	74642319	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.181818
16	74642366	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.107143
16	74645954	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.272727
16	74645958	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.272727
14	74677348	A->G	-	ENSG00000119682	AREL1	protein_coding	Intergenic	.	.	Alu	0.363636
14	74677349	A->G	-	ENSG00000119682	AREL1	protein_coding	Intergenic	.	.	Alu	0.272727
11	74752450	A->G	+	ENSG00000166439	RNF169	protein_coding	Intergenic	.	.	Alu	0.153846
11	74763988	A->G	+	ENSG00000166439	RNF169	protein_coding	Intergenic	.	.	Alu	0.125
11	74763989	A->G	+	ENSG00000166439	RNF169	protein_coding	Intergenic	.	.	Alu	0.352941
15	74796119	A->G	+	ENSG00000103653	CSK	protein_coding	Intergenic	.	.	Alu	0.153846
15	74796120	A->G	+	ENSG00000103653	CSK	protein_coding	Intergenic	.	.	Alu	0.153846
10	74844978	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.153846
10	74845035	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.3
10	74845053	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.0952381
10	74845139	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.105263
10	74845401	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.117647
10	74845658	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.129032
10	74845662	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.0689655
10	74845663	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.103448
10	74845670	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.28
10	74856637	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.153846
10	74856644	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.153846
10	74856723	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.181818
10	74856845	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.235294
10	74856850	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.176471
10	74856856	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.2
10	74856858	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.105263
10	74857868	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.2
10	74857875	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.2
10	74857947	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.25
10	74857983	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.272727
7	74870440	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	74876940	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
7	74876953	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
7	74876962	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
7	74876993	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
7	74877015	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
7	74878600	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0869565
7	74879104	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
7	74879175	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	74879884	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
7	74880419	A->G	-	.	.	.	Intergenic	.	.	Alu	0.454545
7	74880565	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	74880572	A->G	-	.	.	.	Intergenic	.	.	Alu	0.636364
7	74881486	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
11	74979248	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
7	74986300	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.384615
7	74986302	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.384615
7	74986309	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.25
7	74986310	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.416667
7	74986371	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.285714
16	75051759	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.3
16	75051768	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.3
17	75150977	A->G	-	ENSG00000189159	JPT1	protein_coding	Intergenic	.	.	Alu	0.105263
17	75150986	A->G	-	ENSG00000189159	JPT1	protein_coding	Intergenic	.	.	Alu	0.117647
17	75150992	A->G	-	ENSG00000189159	JPT1	protein_coding	Intergenic	.	.	Alu	0.111111
17	75323902	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.307692
17	75323907	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.153846
17	75324316	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.1
17	75324329	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.210526
17	75324610	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0740741
17	75324615	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.09375
17	75324656	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.173913
17	75324672	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.238095
17	75324678	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0740741
17	75324952	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.12
17	75324954	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.148148
17	75324993	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.114286
17	75324994	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.117647
17	75325000	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.115385
17	75325007	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.08
17	75325024	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.148148
17	75346237	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.2
17	75346302	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.173913
17	75346322	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.631579
17	75346328	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
17	75346338	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0833333
17	75346413	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.232558
17	75346414	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.204545
17	75346450	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.666667
17	75346643	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0909091
17	75346720	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0833333
17	75346764	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.130435
17	75346836	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0540541
17	75355904	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.25
17	75355907	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.611111
17	75355914	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.263158
17	75355927	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.111111
17	75355954	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.105263
17	75355959	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	75355969	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.52381
17	75355982	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.230769
17	75368353	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
17	75368354	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
10	75440943	A->G	+	ENSG00000148655	LRMDA	protein_coding	Intergenic	.	.	Alu	0.2
10	75449032	A->G	+	ENSG00000148655	LRMDA	protein_coding	Intergenic	.	.	Alu	0.2
10	75531990	A->G	+	ENSG00000148655	LRMDA	protein_coding	Intergenic	.	.	Alu	0.125
10	75557194	A->G	+	ENSG00000148655	LRMDA	protein_coding	Intergenic	.	.	Alu	0.181818
17	75593412	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.133333
17	75598323	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.125
6	75612994	A->G	+	ENSG00000112701	SENP6	protein_coding	Intergenic	.	.	Alu	0.272727
6	75613003	A->G	+	ENSG00000112701	SENP6	protein_coding	Intergenic	.	.	Alu	0.363636
16	75651473	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0645161
16	75651536	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.102564
16	75651538	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0571429
16	75651539	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0588235
16	75651550	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.222222
16	75651568	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.351351
16	75651569	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0526316
16	75651610	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.441176
17	75696421	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.15
17	75696423	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.0952381
17	75696465	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.153846
17	75805377	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.0869565
17	75806184	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.117647
11	75818004	A->G	+	ENSG00000198382	UVRAG	protein_coding	Intergenic	.	.	Alu	0.166667
15	75877076	A->G	+	ENSG00000140367	UBE2Q2	protein_coding	Intergenic	.	.	Alu	0.142857
15	75877111	A->G	+	ENSG00000140367	UBE2Q2	protein_coding	Intergenic	.	.	Alu	0.0740741
4	75916882	A->G	-	ENSG00000138744	NAAA	protein_coding	Intergenic	.	.	Alu	0.416667
4	75916885	A->G	-	ENSG00000138744	NAAA	protein_coding	Intergenic	.	.	Alu	0.142857
12	76058658	A->G	-	ENSG00000187109	NAP1L1	protein_coding	Intergenic	.	.	Alu	0.111111
12	76058659	A->G	-	ENSG00000187109	NAP1L1	protein_coding	Intergenic	.	.	Alu	0.105263
4	76130119	A->G	-	ENSG00000138750	NUP54	protein_coding	Intergenic	.	.	Alu	0.3
7	76335850	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.0740741
7	76335912	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.192308
7	76337673	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.147059
7	76345324	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.636364
7	76345362	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.2
5	76463024	A->G	+	ENSG00000145703	IQGAP2	protein_coding	Intergenic	.	.	Alu	0.0909091
12	76483312	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.1875
12	76483328	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.368421
12	76483337	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.26087
12	76483396	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.571429
12	76483399	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.1875
12	76483482	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.181818
12	76483507	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.266667
12	76483558	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.181818
12	76483757	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.428571
12	76483812	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.375
12	76483813	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.133333
12	76483819	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.133333
12	76483852	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.25
12	76483857	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.153846
12	76483863	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.266667
12	76483878	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.105263
12	76483892	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.166667
12	76483902	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.133333
12	76483917	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.333333
12	76498796	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.142857
12	76498817	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.105263
5	76517565	A->G	+	ENSG00000145703	IQGAP2	protein_coding	Intergenic	.	.	Alu	0.2
12	76526931	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.166667
12	76530132	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0322581
12	76766773	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.181818
12	76766810	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.214286
12	76766870	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.166667
12	76767003	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.181818
12	76770723	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.181818
12	76824722	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.214286
5	76957904	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.333333
5	76957905	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.466667
5	76958038	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.3
4	76974921	A->G	+	ENSG00000138758	11-Sep	protein_coding	Intergenic	.	.	Alu	0.4
4	76974945	A->G	+	ENSG00000138758	11-Sep	protein_coding	Intergenic	.	.	Alu	0.117647
7	77063836	A->G	+	ENSG00000259628	AC007000.3	processed_transcript	Intergenic	.	.	Alu	0.142857
4	77070156	A->G	-	ENSG00000118816	CCNI	protein_coding	Intergenic	.	.	Alu	0.136364
14	77526972	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.1
14	77528921	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.25
14	77528973	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.117647
14	77529031	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.117647
14	77529041	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.105263
14	77529127	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.08
14	77534101	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.2
14	77534106	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.6
14	77534114	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.3
7	77557956	A->G	+	ENSG00000127947	PTPN12	protein_coding	Intergenic	.	.	Alu	0.166667
1	77602717	A->G	-	ENSG00000036549	AC118549.1	protein_coding	Intergenic	.	.	Alu	0.333333
1	77602738	A->G	-	ENSG00000036549	AC118549.1	protein_coding	Intergenic	.	.	Alu	0.2
1	77602743	A->G	-	ENSG00000036549	AC118549.1	protein_coding	Intergenic	.	.	Alu	0.5
1	77698123	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.461538
1	77698188	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.230769
1	77698192	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.3
1	77698202	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.181818
1	77698345	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.181818
1	77700812	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.2
1	77700825	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.166667
1	77700829	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.363636
1	77700936	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.3
1	77747399	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.12
1	77747456	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.173913
1	77747458	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.0869565
11	77761898	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.222222
11	77761899	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.148148
4	77790777	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.181818
9	77837960	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.272727
9	77837982	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.363636
9	77838002	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.25
9	77838022	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.277778
9	77838063	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.25
9	77838068	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
9	77838284	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.176471
X	77847789	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.105263
X	77852036	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.2
9	77870414	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.1
9	77870464	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.2
9	77870474	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.473684
9	77870532	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.307692
9	77870597	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
X	77883658	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.73913
X	77883661	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.173913
X	77883679	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.529412
X	77883697	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.0909091
9	77904471	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.111111
9	77904535	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.105263
9	77904537	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.166667
9	77951377	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0952381
17	77970972	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.2
17	77972312	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.272727
17	77972427	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.181818
1	77974075	A->G	-	ENSG00000162613	FUBP1	protein_coding	Intergenic	.	.	Alu	0.0298507
9	77975660	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.291667
1	77976632	A->G	-	ENSG00000162613	FUBP1	protein_coding	Intergenic	.	.	Alu	0.307692
1	77976658	A->G	-	ENSG00000162613	FUBP1	protein_coding	Intergenic	.	.	Alu	0.3
17	77982554	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.166667
9	77984357	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0952381
9	77984365	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.181818
9	77984432	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.111111
9	77984433	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.111111
9	77984441	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.222222
9	77985658	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.357143
9	77985672	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.230769
9	77986584	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.103448
9	77986603	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0465116
9	77986670	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0294118
9	77986688	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0714286
9	77986694	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.04
9	77986706	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.666667
9	77986708	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0449438
9	77986710	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0561798
9	77986731	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.056338
9	77986734	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0547945
9	77986775	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.232143
9	77986776	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.203704
9	78012354	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0416667
9	78021205	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.075
9	78021252	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.130435
5	78249784	A->G	-	ENSG00000132842	AP3B1	protein_coding	Intergenic	.	.	Alu	0.3
5	78249785	A->G	-	ENSG00000132842	AP3B1	protein_coding	Intergenic	.	.	Alu	0.6
5	78249851	A->G	-	ENSG00000132842	AP3B1	protein_coding	Intergenic	.	.	Alu	0.4
5	78249852	A->G	-	ENSG00000132842	AP3B1	protein_coding	Intergenic	.	.	Alu	0.2
11	78291664	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.272727
11	78291734	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.2
11	78342681	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0606061
11	78363682	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0714286
11	78389435	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.157895
11	78389439	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.4375
11	78389444	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.5
11	78389445	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.428571
11	78389502	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.190476
11	78389515	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.411765
11	78389521	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0666667
11	78389545	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0645161
11	78396695	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0384615
11	78431673	A->G	-	ENSG00000254420	AP003086.2	antisense	Intergenic	.	.	Alu	0.266667
15	78454937	A->G	+	ENSG00000136381	IREB2	protein_coding	Intergenic	.	.	Alu	0.25
16	78455363	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.117647
16	78455407	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.272727
16	78455421	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.307692
16	78455424	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.8125
16	78455431	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78455476	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.333333
15	78455483	A->G	+	ENSG00000136381	IREB2	protein_coding	Intergenic	.	.	Alu	0.375
16	78455489	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.210526
16	78455509	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	1
16	78455522	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.375
16	78455532	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.285714
16	78472553	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78472631	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.25
16	78472651	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78472653	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78472662	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.153846
16	78472666	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.357143
16	78472688	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.1875
16	78472694	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78497934	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.5
16	78572370	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.166667
16	78572448	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78572492	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.166667
16	78619040	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.1875
16	78619041	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.133333
16	78667577	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.3
16	78713192	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78842265	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78842376	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.153846
16	78858758	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
4	78867003	A->G	+	ENSG00000138756	BMP2K	protein_coding	Intergenic	.	.	Alu	0.153846
4	78867050	A->G	+	ENSG00000138756	BMP2K	protein_coding	Intergenic	.	.	Alu	0.733333
15	78875611	A->G	+	ENSG00000185787	MORF4L1	protein_coding	Intergenic	.	.	Alu	0.142857
15	78875697	A->G	+	ENSG00000185787	MORF4L1	protein_coding	Intergenic	.	.	Alu	0.111111
15	78875730	A->G	+	ENSG00000185787	MORF4L1	protein_coding	Intergenic	.	.	Alu	0.333333
15	78888346	A->G	+	ENSG00000185787	MORF4L1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	78898243	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
15	78898244	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
15	78898313	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
15	78898315	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
15	78898379	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
15	78898431	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
15	78898489	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
15	78899115	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
15	78899267	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
15	78899285	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
15	78899297	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
15	78899331	A->G	+	.	.	.	Intergenic	.	.	Alu	0.222222
10	79094767	A->G	+	ENSG00000108175	ZMIZ1	protein_coding	Intergenic	.	.	Alu	0.2
9	79586295	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.25
9	79586312	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.15
12	79600503	A->G	-	ENSG00000177425	PAWR	protein_coding	Intergenic	.	.	Alu	0.181818
10	79732916	A->G	-	ENSG00000225484	NUTM2B-AS1	antisense	Intergenic	.	.	Alu	0.181818
10	79793405	A->G	-	ENSG00000225484	NUTM2B-AS1	antisense	Intergenic	.	.	Alu	0.2
4	79933873	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.866667
4	79933915	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.142857
4	79933916	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.285714
4	79933917	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.214286
15	80066498	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.307692
15	80066510	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.352941
15	80066688	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.152174
15	80066698	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0652174
15	80066721	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0454545
15	80066737	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.15625
15	80066738	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.484848
15	80066739	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0967742
15	80066741	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0645161
15	80066750	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.117647
15	80066776	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.111111
15	80066777	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.228571
15	80066782	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0810811
15	80066786	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.138889
15	80066799	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.157895
15	80066812	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.25
15	80066818	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.125
15	80066819	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0740741
15	80066860	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.416667
15	80092214	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0731707
15	80092238	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0416667
15	80092267	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.101695
15	80092280	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.025974
15	80092290	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0263158
15	80092385	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0263158
15	80092386	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0641026
7	80155945	A->G	+	ENSG00000127955	GNAI1	protein_coding	Intergenic	.	.	Alu	0.454545
10	80483989	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.166667
10	80484046	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.181818
5	80876477	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
5	80876482	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
5	80876502	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
16	80990299	A->G	-	ENSG00000103121	CMC2	protein_coding	Intergenic	.	.	Alu	0.166667
5	81463421	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0327869
5	81463443	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0512821
5	81463455	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0882353
5	81463456	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.161905
5	81463482	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.104575
5	81463483	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.100671
5	81463495	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.131148
5	81463496	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0310078
5	81463506	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0206186
5	81463532	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0588235
5	81463543	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.491935
5	81463551	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.023622
5	81463552	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0378788
5	81463576	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.507812
5	81463578	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0396825
5	81463591	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	1
5	81463600	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0224719
5	81463613	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.105769
5	81463617	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.787037
5	81463618	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.163462
5	81463643	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.101852
5	81463659	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.796296
5	81463826	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.157895
5	81463841	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0512821
5	81463866	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.134328
5	81463906	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0625
5	81463907	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.307692
5	81463917	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0851064
5	81463925	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.142857
5	81463946	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.103448
5	81463947	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0689655
5	81463951	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.222222
5	81463952	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.222222
5	81463968	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.189189
5	81463982	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0793651
5	81463996	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.197183
5	81464001	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.347826
5	81464015	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.4
5	81464019	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0853659
5	81464020	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.119048
5	81464060	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0333333
5	81464063	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0677966
5	81464064	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0847458
5	81501687	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.190476
5	81501691	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.181818
5	81501695	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.368421
5	81501701	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.2
5	81501727	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.214286
5	81501761	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.666667
5	81501762	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.2
5	81501769	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.25
5	81562107	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.454545
17	81632450	A->G	-	ENSG00000182446	NPLOC4	protein_coding	Intergenic	.	.	Alu	0.3
17	81633927	A->G	-	ENSG00000182446	NPLOC4	protein_coding	Intergenic	.	.	Alu	0.166667
5	81643670	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0444444
5	81643679	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0681818
5	81643740	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0425532
17	81856020	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.142857
17	81856042	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.0740741
17	81856746	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.12
17	81856747	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.0833333
17	81856820	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.0909091
17	82264870	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.166667
4	82366754	A->G	-	ENSG00000138668	HNRNPD	protein_coding	Intergenic	.	.	Alu	0.027027
4	82366788	A->G	-	ENSG00000138668	HNRNPD	protein_coding	Intergenic	.	.	Alu	0.02
4	82884083	A->G	-	ENSG00000138674	SEC31A	protein_coding	Intergenic	.	.	Alu	0.272727
4	82884124	A->G	-	ENSG00000138674	SEC31A	protein_coding	Intergenic	.	.	Alu	0.818182
4	82884125	A->G	-	ENSG00000138674	SEC31A	protein_coding	Intergenic	.	.	Alu	0.5
4	83043253	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.2
4	83043254	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.2
4	83051198	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.176471
4	83051322	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.4
15	83052660	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.222222
15	83052716	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.0625
15	83052727	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	83052841	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.176471
15	83052860	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	83052882	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.0952381
4	83053572	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.4
4	83053640	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.25
4	83053720	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.2
4	83053743	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.133333
4	83053760	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.166667
4	83053761	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.272727
4	83057667	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.105263
4	83057668	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.105263
4	83057768	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.25
4	83057771	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.133333
4	83057775	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.352941
4	83057801	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.107143
4	83057828	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.52381
4	83058254	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.277778
4	83058297	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.1875
4	83058317	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.3125
4	83058330	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.857143
4	83106164	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.363636
4	83106266	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.214286
4	83106367	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.4
4	83106374	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.181818
4	83106490	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.25
4	83106522	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.789474
15	84685360	A->G	-	ENSG00000140612	SEC11A	protein_coding	Intergenic	.	.	Alu	0.272727
15	84714089	A->G	-	ENSG00000140612	SEC11A	protein_coding	Intergenic	.	.	Alu	0.2
16	84750246	A->G	+	ENSG00000103194	USP10	protein_coding	Intergenic	.	.	Alu	0.153846
15	84796038	A->G	+	ENSG00000166716	ZNF592	protein_coding	Intergenic	.	.	Alu	0.153846
15	84796095	A->G	+	ENSG00000166716	ZNF592	protein_coding	Intergenic	.	.	Alu	0.181818
15	85040185	A->G	+	ENSG00000073417	PDE8A	protein_coding	Intergenic	.	.	Alu	0.2
15	85399242	A->G	+	ENSG00000170776	AKAP13	protein_coding	Intergenic	.	.	Alu	0.2
16	85597299	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.636364
2	85609845	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.333333
2	85610179	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.266667
2	85610216	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.416667
6	85633760	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.272727
6	85633777	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.133333
6	85633895	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.4
6	85633903	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.166667
9	85671058	A->G	-	ENSG00000135049	AGTPBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	85972402	A->G	+	ENSG00000135040	NAA35	protein_coding	Intergenic	.	.	Alu	0.25
11	86028997	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.142857
11	86049679	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.454545
11	86049683	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.181818
2	86123141	A->G	+	ENSG00000132300	PTCD3	protein_coding	Intergenic	.	.	Alu	0.727273
2	86167577	A->G	-	ENSG00000132305	IMMT	protein_coding	Intergenic	.	.	Alu	0.5
2	86167649	A->G	-	ENSG00000132305	IMMT	protein_coding	Intergenic	.	.	Alu	0.142857
2	86167685	A->G	-	ENSG00000132305	IMMT	protein_coding	Intergenic	.	.	Alu	0.133333
2	86167687	A->G	-	ENSG00000132305	IMMT	protein_coding	Intergenic	.	.	Alu	0.133333
2	86167719	A->G	-	ENSG00000132305	IMMT	protein_coding	Intergenic	.	.	Alu	0.333333
2	86167722	A->G	-	ENSG00000132305	IMMT	protein_coding	Intergenic	.	.	Alu	0.2
2	86766424	A->G	+	ENSG00000153561	RMND5A	protein_coding	Intergenic	.	.	Alu	0.210526
2	86766544	A->G	+	ENSG00000153561	RMND5A	protein_coding	Intergenic	.	.	Alu	0.157895
1	86890743	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.0952381
1	86890751	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.142857
1	86890805	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.2
1	86891135	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.111111
1	86898678	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.166667
1	86898687	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.117647
1	86898693	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.2
1	86898710	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.307692
1	86936886	A->G	+	ENSG00000153936	HS2ST1	protein_coding	Intergenic	.	.	Alu	0.117647
1	86954228	A->G	+	ENSG00000153936	HS2ST1	protein_coding	Intergenic	.	.	Alu	0.2
4	87021983	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.1875
4	87022012	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.555556
4	87022027	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.111111
4	87022058	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.2
4	87022084	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.130435
4	87022085	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.333333
4	87022117	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.0714286
4	87022126	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.0769231
10	87104389	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.214286
10	87104400	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.111111
10	87104404	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.111111
10	87104432	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.1
10	87104449	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.105263
10	87111687	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.153846
6	87187535	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.0869565
6	87187543	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.1
6	87187565	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.0666667
6	87187571	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.366667
6	87187579	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.0769231
6	87187635	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.166667
6	87187636	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.2
6	87187640	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.275862
6	87193460	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.166667
6	87197617	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.153846
10	87208328	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.545455
10	87208329	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.363636
10	87208418	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.3
6	87249978	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.25
6	87250188	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.133333
6	87250256	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.2
6	87250314	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.642857
6	87250344	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.4
6	87250349	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.714286
10	87315570	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.2
10	87315597	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.1875
10	87315644	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.5
4	87336087	A->G	-	ENSG00000255723	AC108516.2	processed_transcript	Intergenic	.	.	Alu	0.166667
6	87547764	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.4
6	87547777	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.166667
6	87547778	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.166667
16	87731148	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.3
16	87731153	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.181818
16	87731314	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.181818
16	87731361	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.3
3	87841636	A->G	+	.	.	.	Intergenic	.	.	Alu	0.216216
3	87841644	A->G	+	.	.	.	Intergenic	.	.	Alu	0.277778
3	87841645	A->G	+	.	.	.	Intergenic	.	.	Alu	0.361111
3	87841671	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
3	87841675	A->G	+	.	.	.	Intergenic	.	.	Alu	0.35
3	87841691	A->G	+	.	.	.	Intergenic	.	.	Alu	0.470588
3	87841722	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
3	87841724	A->G	+	.	.	.	Intergenic	.	.	Alu	0.210526
3	87841729	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
3	87841747	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
3	87841779	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
3	87841780	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5625
3	87841785	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
3	87841789	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
3	87841793	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
3	87841820	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	87841832	A->G	+	.	.	.	Intergenic	.	.	Alu	0.684211
3	87841855	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	87841860	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0606061
3	87842236	A->G	+	.	.	.	Intergenic	.	.	Alu	0.315789
3	87842248	A->G	+	.	.	.	Intergenic	.	.	Alu	0.444444
3	87842262	A->G	+	.	.	.	Intergenic	.	.	Alu	0.263158
3	87842265	A->G	+	.	.	.	Intergenic	.	.	Alu	0.761905
3	87842266	A->G	+	.	.	.	Intergenic	.	.	Alu	0.15
3	87842278	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
3	87842290	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
3	87842297	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
3	87842300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.75
3	87842302	A->G	+	.	.	.	Intergenic	.	.	Alu	0.192308
3	87842344	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
3	87842361	A->G	+	.	.	.	Intergenic	.	.	Alu	0.647059
3	87842373	A->G	+	.	.	.	Intergenic	.	.	Alu	0.565217
3	87842405	A->G	+	.	.	.	Intergenic	.	.	Alu	0.56
3	87842409	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0740741
3	87842424	A->G	+	.	.	.	Intergenic	.	.	Alu	0.227273
3	87842436	A->G	+	.	.	.	Intergenic	.	.	Alu	0.727273
3	87864694	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	87864734	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
10	87891581	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.125
10	87891585	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.235294
10	87891612	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.111111
10	87891630	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0666667
10	87891652	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.047619
10	87891659	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.15
10	87891734	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0344828
10	87891739	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0909091
10	87891740	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0677966
3	87937660	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
3	87937677	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
3	87937738	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
3	87937740	A->G	+	.	.	.	Intergenic	.	.	Alu	0.190476
3	87937773	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
3	87937803	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
3	87937874	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
10	87947770	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0357143
10	87947815	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0408163
10	87948775	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0454545
4	88013453	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	88013455	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.181818
4	88013544	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.125
4	88013622	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.15625
4	88014410	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.181818
4	88016684	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.111111
4	88016697	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.136364
4	88016699	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.52381
4	88016727	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.136364
4	88016728	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.0869565
4	88016733	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.125
4	88016735	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.375
4	88016746	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	88016751	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.136364
4	88016770	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.227273
4	88016779	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.125
4	88016800	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.117647
4	88016801	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.1875
4	88016802	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.125
4	88016827	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	88016840	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.321429
4	88016886	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.129032
4	88016899	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.121212
4	88016900	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.0909091
4	88017049	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.272727
4	88017069	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	88017092	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.357143
4	88017095	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.4
4	88017109	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.266667
4	88017118	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.142857
4	88017138	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.176471
4	88017200	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.153846
4	88017238	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.411765
4	88017254	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.2
4	88023149	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.21875
3	88088973	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	88089020	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.315789
3	88089025	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.491228
3	88089053	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.05
4	88602139	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.3125
4	88602146	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.133333
4	88602151	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.235294
4	88602199	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.318182
4	88602200	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.0909091
4	88602215	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.0869565
4	88602252	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.105263
4	88602253	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.105263
4	88602282	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.0952381
4	88602304	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.125
4	88602362	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.2
4	88602514	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.3
4	88602536	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.375
4	88602556	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.133333
4	88602579	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.363636
4	88602603	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.181818
4	88602607	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.181818
4	88602700	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.454545
4	88602742	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.1
4	88602748	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.45
2	88608840	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.0689655
2	88608846	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.0645161
2	88608852	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.16
2	88608960	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.105263
1	88722676	A->G	+	ENSG00000065243	PKN2	protein_coding	Intergenic	.	.	Alu	0.25
1	88722680	A->G	+	ENSG00000065243	PKN2	protein_coding	Intergenic	.	.	Alu	0.1875
1	88866105	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.285714
1	88866111	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.266667
1	88866170	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.272727
1	88866182	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.454545
1	88866254	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.307692
1	88866272	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.230769
1	88866525	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.285714
1	88873395	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.214286
1	88874404	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.12
1	88874417	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.0967742
1	88874466	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.0869565
1	88884095	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.181818
1	88884104	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.2
1	88884165	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.0869565
1	88884221	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.125
15	89094961	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.0444444
15	89094967	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.368421
15	89094979	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.0638298
15	89094985	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.0487805
15	89206390	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
15	89273205	A->G	+	ENSG00000140525	FANCI	protein_coding	Intergenic	.	.	Alu	0.272727
15	89273210	A->G	+	ENSG00000140525	FANCI	protein_coding	Intergenic	.	.	Alu	0.181818
14	89318341	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.142857
14	89318438	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.153846
14	89394309	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.142857
14	89467923	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.4
9	89488510	A->G	-	ENSG00000187764	SEMA4D	protein_coding	Intergenic	.	.	Alu	0.5
14	89584810	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.105263
1	89651507	A->G	+	ENSG00000230735	AC093423.2	sense_intronic	Intergenic	.	.	Alu	0.181818
10	89713176	A->G	+	ENSG00000138182	KIF20B	protein_coding	Intergenic	.	.	Alu	0.214286
10	89713257	A->G	+	ENSG00000138182	KIF20B	protein_coding	Intergenic	.	.	Alu	0.4
16	89786116	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.272727
16	89786121	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.2
16	89786157	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.181818
16	89803719	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.230769
16	89803720	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.1875
16	89803750	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.176471
16	89803865	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.2
15	89859108	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.133333
15	89859598	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.266667
15	89859622	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.181818
15	89859668	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.153846
15	89860006	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.3
15	89873977	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.166667
15	89873983	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.307692
15	89874005	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.2
15	89874019	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.272727
15	89874045	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.307692
15	89874077	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.111111
15	89874087	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.2
16	89876765	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.176471
16	89886307	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.2
16	89886349	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.2
16	89886499	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.181818
16	89886615	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.391304
16	89886619	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.315789
16	89886683	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.105263
16	89886707	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.25
16	89886790	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.454545
16	89886849	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.0833333
16	89886857	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.171429
16	89886858	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	1
16	89886865	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.137931
16	89887113	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.142857
16	89887133	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.4
16	89977189	A->G	+	ENSG00000223959	AFG3L1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.181818
16	89977235	A->G	+	ENSG00000223959	AFG3L1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.2
16	89978632	A->G	+	ENSG00000223959	AFG3L1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.363636
16	89978633	A->G	+	ENSG00000223959	AFG3L1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.545455
16	89985122	A->G	+	ENSG00000223959	AFG3L1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.4
15	90082856	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
15	90082860	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
15	90082885	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
15	90082890	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
6	90141319	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.0740741
6	90141337	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	90167470	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.285714
6	90242947	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.181818
6	90243012	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.142857
6	90243018	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.2
6	90243112	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.166667
6	90243125	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.2
6	90247368	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.133333
15	90536447	A->G	+	ENSG00000140577	CRTC3	protein_coding	Intergenic	.	.	Alu	0.2
7	90612543	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.0833333
7	90612557	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.0769231
7	90612595	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.346154
7	90612596	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.230769
7	90612651	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.258065
7	90612652	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.1875
7	90612678	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.08
7	90612722	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.214286
7	90626707	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.181818
7	90626762	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.181818
7	90626819	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.3125
1	90913104	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
1	90928526	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.1875
4	90932552	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.166667
4	90932567	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.25
4	90932618	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.272727
4	90932641	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.5
4	90932642	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.833333
15	90985735	A->G	-	ENSG00000198901	PRC1	protein_coding	Intergenic	.	.	Alu	0.2
1	91010321	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.0243902
1	91010359	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.046875
14	91021583	A->G	-	ENSG00000100784	RPS6KA5	protein_coding	Intergenic	.	.	Alu	0.25
14	91057028	A->G	-	ENSG00000100784	RPS6KA5	protein_coding	Intergenic	.	.	Alu	0.166667
14	91501562	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.4
14	91501637	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.333333
14	91501734	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.133333
14	91501816	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.1875
14	91501829	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.210526
14	91501837	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.222222
14	91503050	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.333333
10	91807832	A->G	+	ENSG00000107854	TNKS2	protein_coding	Intergenic	.	.	Alu	0.2
10	91807875	A->G	+	ENSG00000107854	TNKS2	protein_coding	Intergenic	.	.	Alu	0.153846
10	91946238	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.117647
7	91955880	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.142857
7	91955895	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.166667
10	91997870	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.142857
10	91997899	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.117647
10	91998006	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.15
10	91998061	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.142857
10	91999012	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.181818
10	92001884	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.2
14	92066740	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.2
14	92069238	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.153846
14	92069240	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.166667
14	92069241	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.166667
14	92085289	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.0909091
14	92085298	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.1
14	92085325	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.136364
7	92091332	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.5
7	92091333	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.266667
7	92091465	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.142857
7	92091466	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.461538
7	92091492	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.125
7	92091528	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.166667
14	92091730	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.133333
14	92091824	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.25
14	92091846	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.583333
12	92094088	A->G	-	ENSG00000257242	LINC01619	processed_transcript	Intergenic	.	.	Alu	0.545455
7	92220809	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.142857
7	92220810	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.615385
7	92220822	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.166667
7	92221206	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.230769
7	92221214	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.133333
7	92221244	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.642857
7	92221253	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.333333
1	92259862	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.133333
1	92259866	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.692308
1	92259872	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.285714
1	92259986	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.166667
1	92260007	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.142857
7	92287915	A->G	+	ENSG00000001629	ANKIB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	92292334	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.294118
1	92292335	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.5
1	92292372	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.363636
1	92292499	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.466667
1	92292503	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.25
1	92292549	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.3
1	92292880	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.181818
1	92292900	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.2
1	92292940	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.153846
1	92292947	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.5
1	92292965	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.166667
1	92293000	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.4
10	92300343	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.133333
10	92313925	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.106383
10	92314849	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.333333
9	92386764	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.142857
9	92386767	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.181818
9	92387163	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.2
9	92387174	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.2
9	92387238	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.7
9	92387301	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.416667
9	92434268	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.142857
9	92497612	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.133333
9	92525034	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.272727
9	92525038	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.181818
9	92525275	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.2
9	92525769	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.142857
7	92573246	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.136364
7	92573266	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.125
7	92573388	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.0909091
10	92662163	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	92665057	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.125
7	92665058	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.125
10	92670220	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
10	92671103	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
10	92671104	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
10	92671109	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
10	92671150	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
10	92671213	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
10	92671485	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	92673942	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.133333
7	92674022	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0540541
7	92674052	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0833333
7	92711657	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.05
7	92711660	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.780488
7	92711675	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.105263
7	92711732	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.111111
7	92711735	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.135135
7	92711736	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.410256
7	92711762	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0645161
7	92711763	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0645161
7	92711764	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.741935
7	92711771	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.243243
7	92711994	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.925926
7	92711999	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.944444
7	92712021	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0833333
7	92712030	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.363636
7	92712039	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.105263
7	92712040	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0769231
7	92712073	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.28125
7	92712076	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0769231
7	92712097	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.142857
15	92889185	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0545455
15	92889208	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0645161
15	92889234	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.106667
15	92889243	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0263158
15	92889253	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0235294
15	92889262	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.027027
15	92889272	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0253165
15	92889276	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0340909
15	92889277	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.255814
15	92889281	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.383721
15	92889345	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0930233
15	92889355	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.157895
15	92889365	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.230769
15	92889396	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0645161
15	92889397	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0588235
15	92889408	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.163934
15	92889425	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.174603
15	92889426	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.196721
15	92890219	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.181818
15	92890756	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0714286
15	92890757	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0681818
15	92890816	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0967742
15	92908850	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.153846
15	92908855	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0487805
15	92908863	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0681818
15	92908864	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0425532
15	92908908	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0454545
15	92908921	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	92908932	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0350877
15	92908933	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0535714
15	92908954	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0491803
15	92908957	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0338983
15	92908998	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.101695
15	92909039	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0638298
7	92931683	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
7	92931870	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
7	92931887	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
7	92949375	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
7	92949376	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
10	92978299	A->G	+	ENSG00000138190	EXOC6	protein_coding	Intergenic	.	.	Alu	0.2
10	93017925	A->G	+	ENSG00000138190	EXOC6	protein_coding	Intergenic	.	.	Alu	0.2
1	93334135	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.333333
1	93334136	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.666667
1	93334141	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.384615
1	93334155	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.363636
1	93334201	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.636364
1	93334356	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.304348
1	93334357	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.130435
12	93398219	A->G	+	ENSG00000173598	NUDT4	protein_coding	Intergenic	.	.	Alu	0.384615
12	93398220	A->G	+	ENSG00000173598	NUDT4	protein_coding	Intergenic	.	.	Alu	0.363636
12	93398255	A->G	+	ENSG00000173598	NUDT4	protein_coding	Intergenic	.	.	Alu	0.454545
12	93421313	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.0588235
12	93421334	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.121212
12	93421340	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.0606061
12	93421366	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.142857
12	93433061	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.111111
12	93433065	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.111111
12	93433071	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.2
5	93707831	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.153846
5	93707847	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720103	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.3
11	93720138	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.538462
11	93720143	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.272727
11	93720218	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.176471
11	93720253	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.136364
11	93720297	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.181818
11	93720654	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.769231
11	93720656	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.153846
11	93720670	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.846154
11	93720672	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720673	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.181818
11	93720736	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.5625
11	93720787	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.25
11	93720831	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720832	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.583333
11	93720836	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.2
11	93749559	A->G	+	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.2
11	93767479	A->G	-	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.153846
11	93767855	A->G	-	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.3
11	93767856	A->G	-	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.3
5	93918554	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.1
5	93918559	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.142857
5	93918598	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.333333
5	93918599	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
5	93918601	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.222222
5	93918604	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.3125
5	93918639	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.153846
5	93918655	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
5	93981147	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.0952381
5	93981232	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.2
5	93981270	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.125
5	93981320	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.454545
5	94013342	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.272727
5	94013356	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.214286
5	94013381	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.4
5	94013382	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.2
9	94391108	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.0833333
9	94391248	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.25
9	94391254	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.142857
12	94396560	A->G	-	ENSG00000173588	CEP83	protein_coding	Intergenic	.	.	Alu	0.5
10	94578153	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.25
10	94578154	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.214286
10	94578155	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.0714286
10	94578179	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.235294
10	94578459	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.181818
5	94673615	A->G	+	ENSG00000133302	SLF1	protein_coding	Intergenic	.	.	Alu	0.2
9	94848341	A->G	+	ENSG00000148120	C9orf3	protein_coding	Intergenic	.	.	Alu	0.363636
9	94848358	A->G	+	ENSG00000148120	C9orf3	protein_coding	Intergenic	.	.	Alu	0.181818
9	94895297	A->G	+	ENSG00000148120	C9orf3	protein_coding	Intergenic	.	.	Alu	0.714286
12	95057242	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.285714
12	95057269	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	95057287	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.266667
12	95057308	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.166667
12	95057309	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.105263
12	95057312	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.157895
12	95057377	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.25
12	95057384	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.3
12	95057386	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.5
12	95225545	A->G	+	ENSG00000028203	VEZT	protein_coding	Intergenic	.	.	Alu	0.111111
11	95227228	A->G	-	ENSG00000149212	SESN3	protein_coding	Intergenic	.	.	Alu	0.0689655
12	95239683	A->G	+	ENSG00000028203	VEZT	protein_coding	Intergenic	.	.	Alu	0.111111
12	95239887	A->G	+	ENSG00000028203	VEZT	protein_coding	Intergenic	.	.	Alu	0.0588235
12	95476251	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.121212
12	95476252	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.0833333
12	95476287	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.291667
12	95476291	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.115385
12	95476292	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.285714
12	95476397	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.0909091
12	95476409	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.222222
12	95476469	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.111111
12	95482983	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.2
12	95482984	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.4
12	96201544	A->G	+	ENSG00000111145	ELK3	protein_coding	Intergenic	.	.	Alu	0.454545
12	96262902	A->G	-	ENSG00000111145	ELK3	protein_coding	Intergenic	.	.	Alu	0.166667
2	96263285	A->G	-	ENSG00000135956	TMEM127	protein_coding	Intergenic	.	.	Alu	0.230769
2	96263286	A->G	-	ENSG00000135956	TMEM127	protein_coding	Intergenic	.	.	Alu	0.166667
2	96273497	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0357143
2	96280373	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.3
2	96280412	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.25
2	96280415	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.3
2	96280642	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.148148
2	96280646	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.178571
2	96280687	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.185185
2	96280688	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.148148
2	96280968	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.12
12	96355481	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.37931
12	96355501	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.666667
12	96355502	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.136364
12	96355520	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.0833333
12	96355526	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.0666667
12	96355537	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.0740741
12	96355543	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.291667
12	96355556	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.611111
12	96355569	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.0952381
12	96355634	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.125
12	96355678	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.2
12	96355679	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.428571
12	96375557	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.0769231
12	96375773	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.166667
9	96389997	A->G	-	ENSG00000165244	ZNF367	protein_coding	Intergenic	.	.	Alu	0.166667
12	96391518	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.181818
9	96416150	A->G	-	ENSG00000165244	ZNF367	protein_coding	Intergenic	.	.	Alu	0.125
14	96553563	A->G	+	ENSG00000090060	PAPOLA	protein_coding	Intergenic	.	.	Alu	0.153846
14	96553566	A->G	+	ENSG00000090060	PAPOLA	protein_coding	Intergenic	.	.	Alu	0.285714
14	96553642	A->G	+	ENSG00000090060	PAPOLA	protein_coding	Intergenic	.	.	Alu	0.733333
10	96567222	A->G	-	ENSG00000077147	TM9SF3	protein_coding	Intergenic	.	.	Alu	0.0625
10	96580299	A->G	-	ENSG00000077147	TM9SF3	protein_coding	Intergenic	.	.	Alu	0.153846
10	96580404	A->G	-	ENSG00000077147	TM9SF3	protein_coding	Intergenic	.	.	Alu	0.2
10	96705655	A->G	-	ENSG00000155629	PIK3AP1	protein_coding	Intergenic	.	.	Alu	0.105263
1	96743103	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0769231
1	96743264	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0571429
1	96746581	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0666667
1	96796274	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.111111
1	96798204	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.130435
1	96798210	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0833333
1	96798219	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.181818
1	96798220	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.318182
1	96798246	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
1	96798254	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
1	96798285	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.235294
1	96798286	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.222222
1	96798299	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.105263
1	96798361	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.181818
10	96888111	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.181818
10	96888112	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.181818
10	96888120	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.166667
5	96942569	A->G	+	ENSG00000113441	LNPEP	protein_coding	Intergenic	.	.	Alu	0.25
5	96942604	A->G	+	ENSG00000113441	LNPEP	protein_coding	Intergenic	.	.	Alu	0.142857
9	96946555	A->G	-	ENSG00000196312	MFSD14C	protein_coding	Intergenic	.	.	Alu	0.2
9	96946602	A->G	-	ENSG00000196312	MFSD14C	protein_coding	Intergenic	.	.	Alu	0.4
1	97333089	A->G	-	ENSG00000188641	DPYD	protein_coding	Intergenic	.	.	Alu	0.181818
10	97387474	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.3
X	97464350	A->G	+	ENSG00000147202	DIAPH2	protein_coding	Intergenic	.	.	Alu	0.2
X	97464356	A->G	+	ENSG00000147202	DIAPH2	protein_coding	Intergenic	.	.	Alu	0.2
8	97647442	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.181818
8	97662768	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0740741
8	97666007	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.181818
8	97667782	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0645161
8	97667790	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0740741
8	97667810	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0769231
8	97670364	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.2
8	97676614	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.166667
8	97676884	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.08
8	97779471	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.111111
8	97779866	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.153846
8	97779904	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.117647
8	97779920	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.153846
7	97971501	A->G	-	ENSG00000243554	AC004967.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.583333
7	97971506	A->G	-	ENSG00000243554	AC004967.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
9	97995802	A->G	+	ENSG00000136938	ANP32B	protein_coding	Intergenic	.	.	Alu	0.0952381
8	98043353	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.142857
8	98043405	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.32
8	98043676	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.153846
8	98043683	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.736842
8	98043686	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.756757
7	98109597	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.181818
7	98109623	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.2
7	98109624	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.2
7	98109655	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.181818
7	98109683	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.333333
7	98115674	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.7
4	98312867	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.1875
4	98312909	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.0909091
4	98312954	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.375
4	98312975	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.388889
12	98526749	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.181818
12	98526847	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.0869565
12	98526864	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.125
13	98538330	A->G	-	ENSG00000102572	STK24	protein_coding	Intergenic	.	.	Alu	0.125
5	98884275	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.25
7	98904062	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.545455
7	98904368	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.333333
5	98918186	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.333333
5	98918202	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.3
4	98924319	A->G	-	ENSG00000151247	EIF4E	protein_coding	Intergenic	.	.	Alu	0.142857
7	98959821	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.2
7	99007888	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.105263
7	99017385	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.25
7	99017386	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.181818
7	99017439	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.285714
7	99017448	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.133333
4	99055269	A->G	+	ENSG00000164024	METAP1	protein_coding	Intergenic	.	.	Alu	0.214286
4	99055280	A->G	+	ENSG00000164024	METAP1	protein_coding	Intergenic	.	.	Alu	0.384615
13	99201958	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.272727
13	99318224	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.272727
13	99318237	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	1
13	99318245	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.266667
13	99318297	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	1
13	99318307	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.666667
13	99318543	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.9
6	99405653	A->G	-	ENSG00000132424	PNISR	protein_coding	Intergenic	.	.	Alu	0.117647
6	99405662	A->G	-	ENSG00000132424	PNISR	protein_coding	Intergenic	.	.	Alu	0.4375
6	99405689	A->G	-	ENSG00000132424	PNISR	protein_coding	Intergenic	.	.	Alu	0.142857
2	99407174	A->G	-	ENSG00000135945	REV1	protein_coding	Intergenic	.	.	Alu	0.461538
2	99407180	A->G	-	ENSG00000135945	REV1	protein_coding	Intergenic	.	.	Alu	0.142857
2	99407258	A->G	-	ENSG00000135945	REV1	protein_coding	Intergenic	.	.	Alu	0.166667
2	99407265	A->G	-	ENSG00000135945	REV1	protein_coding	Intergenic	.	.	Alu	0.4
7	99490057	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.181818
7	99490080	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.2
7	99494872	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.133333
7	99497385	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	1
7	99497452	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.3
6	99555530	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.181818
6	99555608	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.181818
6	99556718	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.3
6	99556758	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.133333
6	99556772	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.235294
6	99556773	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.1875
2	99618515	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.166667
2	99639811	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.166667
2	99639896	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.4
2	99639972	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.4
2	99643127	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.352941
2	99643156	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.25
2	99643235	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.272727
2	99643279	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.4
15	99670595	A->G	+	ENSG00000068305	MEF2A	protein_coding	Intergenic	.	.	Alu	0.0909091
2	99719001	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.166667
3	99832297	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.454545
3	99832360	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.666667
3	99832370	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.2
3	99832372	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.133333
3	99832656	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.75
3	99832657	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.75
3	99832678	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.214286
3	99832720	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.866667
3	99832721	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.533333
3	99832761	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.823529
3	99832785	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.117647
3	99832792	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.772727
3	99832827	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.727273
3	99832828	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.2
4	99933416	A->G	-	ENSG00000164031	DNAJB14	protein_coding	Intergenic	.	.	Alu	0.272727
2	100038844	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.2
2	100038988	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.153846
2	100038991	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.4
1	100067112	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.0689655
1	100067620	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.272727
1	100067666	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.166667
1	100074662	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.176471
1	100074724	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.133333
2	100078985	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.166667
12	100130055	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.5
1	100131314	A->G	-	ENSG00000156876	SASS6	protein_coding	Intergenic	.	.	Alu	0.363636
1	100131322	A->G	-	ENSG00000156876	SASS6	protein_coding	Intergenic	.	.	Alu	0.166667
12	100135332	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.25
12	100135340	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.1
12	100135366	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.103448
12	100135407	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0666667
12	100135447	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0689655
12	100135448	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.103448
12	100135511	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0769231
12	100136089	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.214286
12	100136122	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.166667
12	100136124	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.333333
12	100136128	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.333333
12	100136129	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.25
12	100136839	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.214286
12	100136901	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.08
12	100136909	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	1
12	100136940	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0882353
12	100136944	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.05
12	100136976	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.2
12	100136987	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0625
12	100136989	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0645161
12	100136990	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0645161
12	100136993	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0555556
12	100137012	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0487805
12	100137014	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.341463
12	100137018	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0869565
12	100137048	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.037037
12	100137084	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0625
12	100137086	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.191489
9	100161283	A->G	+	ENSG00000119509	INVS	protein_coding	Intergenic	.	.	Alu	0.166667
9	100183670	A->G	+	ENSG00000119509	INVS	protein_coding	Intergenic	.	.	Alu	0.153846
9	100183676	A->G	+	ENSG00000119509	INVS	protein_coding	Intergenic	.	.	Alu	0.272727
9	100183680	A->G	+	ENSG00000119509	INVS	protein_coding	Intergenic	.	.	Alu	0.181818
7	100203318	A->G	-	ENSG00000066923	STAG3	protein_coding	Intergenic	.	.	Alu	0.2
7	100254096	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.166667
7	100254110	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.181818
7	100254145	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.153846
7	100254154	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.5
7	100254155	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.2
7	100254215	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.333333
10	100257361	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.181818
10	100257369	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.5
10	100257467	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.181818
10	100257473	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.2
10	100257478	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.181818
10	100257479	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.181818
10	100257482	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.727273
10	100257493	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.2
10	100257526	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.6
10	100257532	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.181818
14	100272135	A->G	+	ENSG00000100811	YY1	protein_coding	Intergenic	.	.	Alu	0.333333
7	100278555	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
7	100284277	A->G	-	.	.	.	Intergenic	.	.	Alu	0.454545
7	100284278	A->G	-	.	.	.	Intergenic	.	.	Alu	0.615385
7	100284296	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	100284297	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
7	100284319	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	100284354	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
7	100284360	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	100286264	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.0625
1	100286265	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.125
1	100286267	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.09375
1	100286307	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.15
1	100286333	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.666667
7	100319086	A->G	-	ENSG00000214300	SPDYE3	protein_coding	Intergenic	.	.	Alu	0.133333
12	100321861	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.2
12	100321864	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.2
12	100322713	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.176471
12	100322739	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.115385
12	100322762	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	100322907	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.142857
7	100363047	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.131579
7	100363065	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.0540541
6	100871313	A->G	-	ENSG00000112249	ASCC3	protein_coding	Intergenic	.	.	Alu	0.272727
6	100871366	A->G	-	ENSG00000112249	ASCC3	protein_coding	Intergenic	.	.	Alu	0.266667
6	100871367	A->G	-	ENSG00000112249	ASCC3	protein_coding	Intergenic	.	.	Alu	0.153846
7	100877346	A->G	+	ENSG00000087087	SRRT	protein_coding	Intergenic	.	.	Alu	0.2
7	100878191	A->G	+	ENSG00000087087	SRRT	protein_coding	Intergenic	.	.	Alu	0.4
10	100952124	A->G	+	ENSG00000119906	SLF2	protein_coding	Intergenic	.	.	Alu	0.5
10	100953259	A->G	+	ENSG00000119906	SLF2	protein_coding	Intergenic	.	.	Alu	0.2
10	100953267	A->G	+	ENSG00000119906	SLF2	protein_coding	Intergenic	.	.	Alu	0.3
2	101274898	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.155556
2	101274924	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0769231
2	101274925	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0566038
2	101288358	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0645161
2	101288389	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.153846
2	101288457	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0689655
2	101288498	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.15
15	101288529	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.153846
3	101586096	A->G	+	ENSG00000081154	PCNP	protein_coding	Intergenic	.	.	Alu	0.117647
3	101586131	A->G	+	ENSG00000081154	PCNP	protein_coding	Intergenic	.	.	Alu	0.117647
3	101586657	A->G	+	ENSG00000081154	PCNP	protein_coding	Intergenic	.	.	Alu	0.818182
3	101663037	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.153846
3	101663068	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.3
3	101663078	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.428571
3	101663084	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.190476
2	101702449	A->G	+	ENSG00000071054	MAP4K4	protein_coding	Intergenic	.	.	Alu	0.125
2	101702465	A->G	+	ENSG00000071054	MAP4K4	protein_coding	Intergenic	.	.	Alu	0.105263
12	101709118	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.2
12	101709138	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.722222
12	101709140	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.105263
12	101709141	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.105263
12	101709181	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.363636
12	101709214	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.636364
12	101709244	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.125
12	101709247	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.125
12	101709250	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.4
12	101709288	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.133333
12	101709316	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.2
12	101775364	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.111111
10	101789412	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.181818
10	101789714	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.357143
10	101789715	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.142857
10	101789717	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.5625
10	101789723	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.882353
10	101789756	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.409091
10	101789757	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.227273
10	101789771	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.190476
10	101789782	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.764706
10	101789804	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.181818
10	101789848	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.136364
10	101789857	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.190476
10	101789867	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.157895
10	101789870	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.117647
10	101789871	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.117647
10	101789938	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.944444
10	101789940	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.411765
10	101789945	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	1
10	101790365	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	1
10	101790369	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.461538
10	101790370	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.148148
10	101790388	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0444444
10	101790394	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0508475
10	101790397	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0952381
10	101790401	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0454545
10	101790410	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.164384
10	101790437	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.355556
10	101790445	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0240964
10	101790470	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.205479
10	101790471	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.298507
10	101790472	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.057971
10	101790480	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.306452
10	101790495	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.176471
10	101790496	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.205882
10	101790504	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0769231
10	101790508	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0655738
10	101790528	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0454545
10	101790544	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.322581
10	101790549	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.538462
10	101790550	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.634615
10	101790566	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.047619
12	101812843	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.2
12	101812878	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.2
12	101818557	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.2
12	101824534	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.230769
12	101824535	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.214286
12	101824563	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
12	101824564	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.142857
12	101827040	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.162162
12	101827059	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.0666667
12	101827101	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.0833333
12	101827103	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.32
12	101827115	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.25
12	101827119	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.130435
12	101827129	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.0952381
12	101827157	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.238095
12	101827295	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.0714286
12	101827406	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.107143
12	101827854	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.181818
12	101827881	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
7	101833170	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.230769
7	101833307	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.142857
7	101833339	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0714286
7	101833348	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0833333
7	101833448	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0555556
7	101833461	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.133333
7	101833490	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.105263
7	101833509	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0909091
7	101847938	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.210526
7	101847990	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.181818
7	101856100	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.230769
7	101943862	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.117647
7	101943879	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.133333
7	102117330	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.133333
7	102117340	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.166667
12	102135424	A->G	+	ENSG00000185480	PARPBP	protein_coding	Intergenic	.	.	Alu	0.818182
7	102144957	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.3
7	102144959	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.2
7	102144967	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.181818
7	102145044	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.272727
7	102151606	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.142857
14	102163507	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.153846
14	102163508	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.166667
14	102179517	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.125
14	102179518	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.125
14	102190880	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.3
4	102338391	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.125
4	102338415	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.105263
4	102338420	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.0952381
4	102338453	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.130435
4	102338458	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.15
7	102384316	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.181818
8	102385690	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.166667
7	102385719	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.181818
7	102395503	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.133333
7	102399857	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.181818
7	102400199	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.25
11	102425722	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.0392157
11	102428502	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.272727
10	102478754	A->G	-	ENSG00000138107	ACTR1A	protein_coding	Intergenic	.	.	Alu	0.2
10	102478792	A->G	-	ENSG00000138107	ACTR1A	protein_coding	Intergenic	.	.	Alu	0.2
10	102478794	A->G	-	ENSG00000138107	ACTR1A	protein_coding	Intergenic	.	.	Alu	0.3
14	102612878	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.363636
14	102651313	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.266667
14	102651433	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.181818
14	102705917	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.166667
14	102705991	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.7
14	102705997	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.2
14	102706005	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.5
4	102758640	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.0769231
14	102787566	A->G	+	ENSG00000131323	TRAF3	protein_coding	Intergenic	.	.	Alu	0.142857
14	102787575	A->G	+	ENSG00000131323	TRAF3	protein_coding	Intergenic	.	.	Alu	0.142857
4	102790748	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
4	102790761	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
4	102814413	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0481928
4	102814426	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0266667
4	102814576	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0588235
4	102814582	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0454545
4	102814584	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0307692
14	102846736	A->G	+	ENSG00000131323	TRAF3	protein_coding	Intergenic	.	.	Alu	0.5
4	102873411	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	102873413	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.181818
4	102873419	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.214286
4	102873514	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.0952381
4	102873901	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.0769231
4	102873927	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.227273
4	102873992	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.117647
4	102873997	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.157895
10	103108996	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.4
10	103109043	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103109066	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103109120	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.333333
10	103116646	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0833333
10	103116659	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.423077
10	103116667	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.333333
10	103116713	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.1
10	103116793	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.384615
10	103116808	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.285714
10	103118521	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.214286
10	103118552	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103118553	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103118555	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103118618	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.133333
10	103143528	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.277778
10	103143533	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.55
10	103143534	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.490909
10	103143542	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.25641
10	103143581	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.163636
10	103143593	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.259259
10	103143827	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.111111
10	103143868	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.5
10	103143872	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.333333
10	103143924	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.117647
10	103143949	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.136364
10	103166852	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.125
10	103166895	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.103448
10	103167153	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.15
10	103167194	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0526316
10	103167196	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0857143
10	103167234	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103170612	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0434783
10	103170687	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.192308
10	103170691	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	103170730	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.117647
10	103170731	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.117647
10	103170800	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.285714
10	103179119	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.2
10	103179156	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.363636
10	103189754	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.1
10	103189765	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0666667
10	103189813	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0645161
10	103189833	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.125
10	103189837	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0689655
14	103389421	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.133333
14	103399552	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.166667
14	103494337	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.142857
14	103494399	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.166667
14	103681534	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.166667
14	103682132	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.363636
14	103682133	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.636364
14	103682249	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.764706
14	103682255	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.6
14	103682291	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.171429
14	103682319	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.142857
14	103682325	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.333333
14	103682633	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.578947
14	103682639	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.111111
14	103682672	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.157895
12	103936432	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.294118
12	103936460	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.153846
12	103936500	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.0769231
12	103936526	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.1
12	103936540	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.25
12	104299583	A->G	+	ENSG00000198431	TXNRD1	protein_coding	Intergenic	.	.	Alu	0.363636
12	104299605	A->G	+	ENSG00000198431	TXNRD1	protein_coding	Intergenic	.	.	Alu	0.181818
12	104460402	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0645161
12	104460544	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0882353
12	104461893	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0465116
12	104461974	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0352941
12	104461977	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0235294
12	104461978	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0588235
12	104462047	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0322581
12	104462082	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0353982
12	104462088	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.021978
12	104543977	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0434783
12	104544003	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0357143
12	104544049	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0909091
12	104546393	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0606061
12	104556920	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.4
12	104559639	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.181818
12	104575072	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0645161
12	104575073	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0606061
12	104589321	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0689655
12	104637025	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.25
12	104637047	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0487805
12	104637053	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0526316
12	104637117	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0909091
12	104637125	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0930233
12	104637127	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0681818
12	104685965	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.176471
12	104685985	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.333333
12	104685995	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.176471
12	104686031	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.115385
12	104686036	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.375
12	104686046	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.272727
12	104686086	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.142857
12	104686106	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.238095
12	104696435	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0625
12	104696537	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0434783
12	104696568	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0555556
12	104696587	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0447761
12	104696606	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.05
12	104696607	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.115385
12	104755522	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.15
12	104755566	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.111111
12	104755627	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.166667
7	104987349	A->G	-	ENSG00000228393	LINC01004	antisense	Intergenic	.	.	Alu	0.181818
7	105019988	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0392157
7	105023249	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0882353
7	105023251	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.135135
7	105023255	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.189189
7	105023282	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.25
7	105023287	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0392157
7	105023291	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0408163
7	105023334	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.117647
7	105023515	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.15625
7	105023525	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0588235
7	105023544	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.1
7	105023574	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.321429
7	105023594	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0625
7	105023610	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0645161
7	105023611	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.15625
7	105031917	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0714286
7	105031947	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.238095
7	105031961	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0952381
7	105032005	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0769231
7	105032323	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.133333
7	105032341	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.166667
7	105070514	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.166667
7	105073290	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0714286
7	105073325	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0833333
14	105267432	A->G	-	ENSG00000185024	BRF1	protein_coding	Intergenic	.	.	Alu	0.357143
14	105339292	A->G	+	ENSG00000179364	PACS2	protein_coding	Intergenic	.	.	Alu	0.363636
7	105350653	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.1875
7	105350663	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.266667
7	105373567	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.272727
7	105373604	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.214286
7	105383549	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.166667
7	107171713	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.2
7	107171781	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.166667
7	107271135	A->G	-	ENSG00000164597	COG5	protein_coding	Intergenic	.	.	Alu	0.0869565
7	107271215	A->G	-	ENSG00000164597	COG5	protein_coding	Intergenic	.	.	Alu	0.214286
7	107271220	A->G	-	ENSG00000164597	COG5	protein_coding	Intergenic	.	.	Alu	0.357143
9	107287754	A->G	+	ENSG00000119318	RAD23B	protein_coding	Intergenic	.	.	Alu	0.0833333
9	107325194	A->G	+	ENSG00000119318	RAD23B	protein_coding	Intergenic	.	.	Alu	0.111111
9	107325259	A->G	+	ENSG00000119318	RAD23B	protein_coding	Intergenic	.	.	Alu	0.0689655
3	107544906	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.0909091
3	107544910	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.0909091
3	107565644	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.25
3	107565653	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.133333
3	107565667	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.142857
3	107565692	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.125
3	107565996	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.166667
3	107566012	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.363636
3	107566018	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.272727
3	107592281	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.142857
6	107938444	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0392157
6	107938689	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.151515
6	107938694	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.333333
6	107938770	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.210526
6	107938784	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.111111
6	107938805	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.107143
6	107938806	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.148148
6	107938828	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.1
6	107939048	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.181818
6	107939086	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.545455
6	107939091	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.363636
11	108017226	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.133333
11	108017287	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.136364
11	108017315	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.12
11	108017340	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.0869565
11	108017347	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.185185
11	108017373	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.181818
11	108100422	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.2
8	108218872	A->G	-	ENSG00000104408	EIF3E	protein_coding	Intergenic	.	.	Alu	0.105263
6	108244778	A->G	-	ENSG00000112335	SNX3	protein_coding	Intergenic	.	.	Alu	0.285714
2	108453665	A->G	+	ENSG00000135968	GCC2	protein_coding	Intergenic	.	.	Alu	0.4
7	108505029	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.285714
7	108505460	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.111111
7	108505491	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.0714286
7	108505495	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.172414
7	108505501	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.565217
7	108505556	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.130435
7	108505566	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.0967742
7	108505582	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.294118
6	108600336	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.142857
6	108600340	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.153846
6	108600359	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.75
6	108600360	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.545455
6	108600426	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.266667
6	108600427	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	1
2	108629991	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.307692
2	108629992	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.230769
12	108651938	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.294118
12	108651939	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.526316
12	108651973	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.266667
12	108651999	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.315789
2	108788700	A->G	+	ENSG00000163006	CCDC138	protein_coding	Intergenic	.	.	Alu	0.1
9	108920397	A->G	-	ENSG00000070061	ELP1	protein_coding	Intergenic	.	.	Alu	0.272727
9	108920398	A->G	-	ENSG00000070061	ELP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	108920402	A->G	-	ENSG00000070061	ELP1	protein_coding	Intergenic	.	.	Alu	0.153846
1	108942981	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.307692
1	108942983	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.142857
1	108942984	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.714286
1	108942988	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.142857
1	108951842	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.416667
9	109058139	A->G	-	ENSG00000106771	TMEM245	protein_coding	Intergenic	.	.	Alu	0.214286
1	109405575	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.230769
4	109454363	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.166667
4	109484573	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0769231
4	109484587	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0645161
4	109484622	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.2
4	109487045	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0666667
4	109500433	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0666667
4	109500436	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0967742
4	109500447	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0689655
4	109500465	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0645161
4	109500469	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.142857
4	109500495	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0625
4	109500700	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.217391
4	109500740	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.115385
4	109500758	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.166667
4	109527625	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.285714
4	109527630	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.166667
4	109527651	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.125
4	109527652	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.176471
4	109527692	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.230769
4	109527698	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.153846
4	109528220	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.461538
4	109528237	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.333333
4	109528305	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.166667
4	109528306	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.5
4	109566940	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.153846
4	109566982	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.333333
4	109566993	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.157895
4	109567002	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.24
4	109567009	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.0740741
4	109573265	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.153846
4	109573326	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.181818
4	109573332	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.538462
4	109573339	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.266667
4	109573372	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.25
4	109573394	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.2
4	109573395	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.636364
4	109573416	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.4
5	109800027	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.3
12	109941618	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.272727
12	109941646	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.4
12	109969370	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.166667
12	109973929	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.3
12	109973930	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.4
12	109976043	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.2
12	109976484	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.125
12	109976556	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0714286
12	109976681	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.130435
12	109976861	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0769231
12	109976875	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.111111
12	109977290	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.105263
12	109977722	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.3
12	109978355	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.2
12	109978362	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.222222
9	110053339	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.583333
9	110053340	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.181818
9	110053408	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.357143
9	110245868	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.272727
9	110245877	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.230769
9	110245943	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.384615
9	110245953	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.0909091
9	110245965	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.125
9	110245982	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.0833333
9	110246013	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.133333
9	110246029	A->G	-	ENSG00000136810	TXN	protein_coding	Intergenic	.	.	Alu	0.526316
1	110352527	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.464286
1	110352531	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.129032
1	110352533	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.0689655
1	110352549	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.151515
1	110352550	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.277778
1	110352572	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.25
1	110352596	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.409091
1	110352597	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.416667
1	110353248	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.21875
1	110353249	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.30303
1	110353261	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.0740741
1	110353267	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.107143
1	110353283	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.0645161
1	110362522	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.125
1	110362530	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.157895
1	110367575	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.230769
1	110367589	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.333333
12	110448078	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.181818
12	110448079	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.454545
12	110448117	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.2
12	110448139	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.333333
12	110497355	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.272727
12	110497381	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.2
12	110497385	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.181818
12	110497420	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.454545
12	110497421	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.454545
12	110497444	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.4
12	110497489	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.214286
12	110497490	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.133333
6	110714862	A->G	-	ENSG00000155111	CDK19	protein_coding	Intergenic	.	.	Alu	0.142857
13	110897198	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0588235
13	110897279	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0746269
13	110897356	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0416667
13	110897361	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0588235
13	110897383	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.418919
6	110897569	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
6	110897570	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
6	110897573	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
6	110897629	A->G	+	.	.	.	Intergenic	.	.	Alu	0.571429
6	110897630	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
6	110898005	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
6	110898006	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
6	110898061	A->G	+	.	.	.	Intergenic	.	.	Alu	0.222222
6	110898075	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
13	110898648	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.101351
13	110898665	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.03125
13	110898675	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0522388
13	110898687	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0666667
13	110898697	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0691824
13	110898729	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0210526
13	110898927	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0769231
13	110898930	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0714286
13	110898989	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0666667
13	110899013	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0645161
13	110899024	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.361111
13	110899029	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.472222
1	110900502	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
1	110900547	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
1	110910360	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
6	110912195	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
10	110924860	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.133333
10	110924911	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.2
10	110924912	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	1
10	110924920	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.2
10	110924951	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	1
10	110924977	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.666667
13	111207184	A->G	+	ENSG00000102606	ARHGEF7	protein_coding	Intergenic	.	.	Alu	0.388889
13	111207238	A->G	+	ENSG00000102606	ARHGEF7	protein_coding	Intergenic	.	.	Alu	0.578947
13	111207281	A->G	+	ENSG00000102606	ARHGEF7	protein_coding	Intergenic	.	.	Alu	0.75
13	111207298	A->G	+	ENSG00000102606	ARHGEF7	protein_coding	Intergenic	.	.	Alu	0.125
7	111214468	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.117647
7	111214471	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.111111
7	111214480	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.294118
7	111214481	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.5
7	111214556	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.307692
6	111271883	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
6	111271907	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
6	111271912	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
6	111318220	A->G	-	ENSG00000009413	REV3L	protein_coding	Intergenic	.	.	Alu	0.117647
6	111318226	A->G	-	ENSG00000009413	REV3L	protein_coding	Intergenic	.	.	Alu	0.117647
12	111420278	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.1
12	111427152	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.416667
12	111427184	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.272727
9	111454807	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.181818
9	111454809	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.25
9	111454836	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.25
9	111454842	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.333333
9	111480365	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.125
9	111480366	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.1875
9	111480394	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.1
9	111480395	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.0909091
9	111480400	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.130435
9	111480422	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.115385
9	111480436	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.0833333
9	111480467	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.0909091
9	111480491	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.266667
9	111480492	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.133333
9	111480557	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.285714
6	111489449	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.111111
6	111489476	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.0909091
6	111489510	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.1
6	111489520	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.0909091
6	111520556	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.181818
12	111574566	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.272727
12	111574568	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.181818
12	111574631	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.4
12	111574646	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.2
1	111653498	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	111653506	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.2
1	111653537	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	111653564	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.111111
1	111653569	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.111111
1	111653573	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.230769
1	111653603	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.2
12	111668934	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.176471
12	111671467	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.384615
12	111671879	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.142857
12	111671995	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.8
12	111671996	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.3
11	112239119	A->G	+	ENSG00000150787	PTS	protein_coding	Intergenic	.	.	Alu	0.2
9	112302768	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.142857
9	112329978	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.2
12	112432733	A->G	+	ENSG00000179295	PTPN11	protein_coding	Intergenic	.	.	Alu	0.153846
12	112434563	A->G	+	ENSG00000179295	PTPN11	protein_coding	Intergenic	.	.	Alu	0.7
3	112565705	A->G	+	ENSG00000138459	SLC35A5	protein_coding	Intergenic	.	.	Alu	0.25
1	112623431	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.363636
1	112623505	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.2
1	112623859	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.117647
1	112623891	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.133333
1	112627587	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.08
1	112663541	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.133333
1	112663571	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.227273
1	112663602	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0833333
1	112663631	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.6
1	112663779	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.315789
1	112663970	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.285714
1	112663978	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.142857
1	112663979	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	112663996	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0714286
1	112664023	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.655172
1	112664025	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	112664048	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.148148
1	112664050	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.75
1	112664056	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.272727
1	112664061	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.105263
1	112664111	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.3
1	112664117	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.214286
1	112664121	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0714286
1	112664152	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.5
1	112664157	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.294118
7	112787415	A->G	-	ENSG00000146802	TMEM168	protein_coding	Intergenic	.	.	Alu	0.181818
5	112988267	A->G	+	ENSG00000172795	DCP2	protein_coding	Intergenic	.	.	Alu	0.181818
5	112988295	A->G	+	ENSG00000172795	DCP2	protein_coding	Intergenic	.	.	Alu	0.3
5	112988299	A->G	+	ENSG00000172795	DCP2	protein_coding	Intergenic	.	.	Alu	0.2
10	113075379	A->G	+	ENSG00000148737	TCF7L2	protein_coding	Intergenic	.	.	Alu	0.4
12	113183885	A->G	-	ENSG00000123064	DDX54	protein_coding	Intergenic	.	.	Alu	0.2
13	113222651	A->G	+	ENSG00000139842	CUL4A	protein_coding	Intergenic	.	.	Alu	0.272727
13	113222657	A->G	+	ENSG00000139842	CUL4A	protein_coding	Intergenic	.	.	Alu	0.2
5	113521610	A->G	+	ENSG00000047188	YTHDC2	protein_coding	Intergenic	.	.	Alu	0.2
3	113666700	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.125
3	113666704	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.133333
1	113716437	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.037037
1	113716442	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	113716452	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.0625
1	113716455	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.0588235
3	113729059	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.075
3	113729082	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.0625
3	113729110	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.1
3	113729671	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.258065
3	113729753	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.2
3	113729771	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.272727
3	113729804	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.333333
3	113729822	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.3125
3	113729830	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.214286
1	113732994	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.25
1	113733018	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.125
1	113733035	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.153846
1	113733104	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.3
1	113748632	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	113752497	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.166667
2	113753307	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.185185
2	113753311	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.103448
2	113753343	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.075
2	113753349	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0540541
2	113753355	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.235294
2	113753359	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0588235
2	113753393	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.181818
2	113753414	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0689655
2	113753419	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.137931
2	113753432	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0869565
2	113753443	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.217391
3	113755533	A->G	+	ENSG00000114573	ATP6V1A	protein_coding	Intergenic	.	.	Alu	0.153846
2	113907758	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.142857
2	113936068	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.125
2	113936171	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.1
2	113949116	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.166667
2	113949120	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.130435
2	113949122	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0909091
2	113949123	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.125
2	113949655	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.25
2	113949752	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.2
3	114061813	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.5
3	114062146	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.461538
3	114062179	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.153846
3	114062180	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.846154
13	114258842	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.166667
13	114258843	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.214286
13	114258865	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.133333
13	114258867	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.4375
13	114258873	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.111111
13	114258955	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.8
13	114258978	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.642857
13	114259018	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.8
13	114259019	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.7
3	114346882	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.2
3	114346889	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.181818
3	114347160	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.133333
1	114504304	A->G	-	ENSG00000197323	TRIM33	protein_coding	Intergenic	.	.	Alu	0.0869565
1	114504317	A->G	-	ENSG00000197323	TRIM33	protein_coding	Intergenic	.	.	Alu	0.0909091
1	114504376	A->G	-	ENSG00000197323	TRIM33	protein_coding	Intergenic	.	.	Alu	0.117647
1	114573459	A->G	-	ENSG00000116752	BCAS2	protein_coding	Intergenic	.	.	Alu	0.133333
1	114574991	A->G	-	ENSG00000116752	BCAS2	protein_coding	Intergenic	.	.	Alu	0.0465116
3	114593549	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.166667
3	114681258	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.133333
5	115845570	A->G	+	ENSG00000177879	AP3S1	protein_coding	Intergenic	.	.	Alu	0.5
5	115846271	A->G	+	ENSG00000177879	AP3S1	protein_coding	Intergenic	.	.	Alu	0.3
12	115943106	A->G	-	.	.	.	Intergenic	.	.	Alu	0.7
12	116086407	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.272727
12	116102859	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.166667
12	116146325	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.214286
12	116146392	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.454545
12	116146393	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.318182
12	116146401	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.142857
12	116165427	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.541667
12	116165428	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.347826
12	116165436	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.368421
12	116165452	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0769231
12	116165471	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.37931
12	116165531	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.230769
12	116165558	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0909091
12	116170725	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.142857
12	116206192	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0666667
12	116206205	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0909091
12	116206219	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.117647
12	116206284	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0967742
12	116206285	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0967742
12	116240221	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.133333
12	116253817	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.105263
12	116253832	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.111111
12	116253845	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.176471
12	116253856	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0833333
12	116253865	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.206897
12	116253924	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.245614
12	116253928	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0806452
12	116253929	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.177419
12	116253930	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0327869
12	116253931	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.137931
12	116253932	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0535714
12	116253954	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0714286
12	116253955	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0465116
12	116253956	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.108696
12	116253964	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0555556
12	116253965	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.06
12	116253993	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.272727
12	116254718	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.333333
11	116922979	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	116922982	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	116923002	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.25
11	116923009	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	116923028	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	116923045	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.357143
11	116923073	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	116923081	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.615385
11	116923119	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.230769
11	116948213	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	116999667	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117014042	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1
11	117014072	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117014077	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	117014082	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	117014117	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117032639	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0540541
11	117038632	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.818182
11	117063648	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117063701	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0465116
11	117063706	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.25
11	117063707	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.311111
11	117063729	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.05
11	117063733	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.210526
11	117063746	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0714286
11	117063763	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.225806
11	117063817	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	117063838	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0769231
11	117065767	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1875
11	117065829	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.125
11	117065833	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.130435
11	117066130	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.047619
11	117066206	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0967742
11	117066229	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0769231
11	117066233	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0645161
11	117066349	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117066582	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	117066588	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117070351	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0348837
11	117070356	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0681818
11	117070369	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0263158
11	117070401	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0441176
11	117070404	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.123077
11	117070405	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.322581
11	117070407	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0357143
11	117070413	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.301887
11	117070414	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.102041
11	117070415	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.857143
11	117070499	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0465116
11	117070568	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.288889
11	117070571	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0930233
11	117070578	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.428571
11	117070725	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0930233
11	117070849	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0350877
11	117070864	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.102941
11	117070878	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0253165
11	117070885	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.025974
11	117070890	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.157143
11	117070891	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0985915
11	117070917	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.138889
11	117070957	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117071001	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.25
11	117071002	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.3125
11	117071714	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117075680	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0547945
11	117075724	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0444444
11	117075941	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.102041
11	117075964	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.04
11	117075986	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0588235
11	117076043	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0555556
11	117076052	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.107692
11	117076053	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0757576
11	117076082	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0588235
11	117076121	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.133333
11	117076128	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.102564
11	117076737	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.461538
1	117082987	A->G	+	ENSG00000116830	TTF2	protein_coding	Intergenic	.	.	Alu	0.461538
1	117082988	A->G	+	ENSG00000116830	TTF2	protein_coding	Intergenic	.	.	Alu	0.333333
11	117085183	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1
11	117085184	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1
11	117085185	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.263158
11	117085264	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.25
11	117085343	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117085345	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.272727
11	117085354	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	117146800	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intergenic	.	.	Alu	0.181818
11	117177043	A->G	+	.	.	.	Intergenic	.	.	Alu	0.636364
11	117177046	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
11	117177049	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
12	117180763	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.25
12	117180764	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.235294
12	117182276	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.470588
12	117182322	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.647059
12	117182368	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.692308
12	117182370	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.307692
12	117182374	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.857143
12	117182390	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.333333
12	117182408	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.15
12	117182432	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.125
12	117182442	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.166667
12	117182453	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.181818
12	117182483	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.333333
12	117182636	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.25
12	117182700	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.125
12	117182701	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.0833333
12	117182835	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.166667
12	117182889	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.3
12	117182971	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.166667
12	117182993	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.363636
12	117183010	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.263158
12	117183011	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.294118
10	117328535	A->G	-	ENSG00000165650	PDZD8	protein_coding	Intergenic	.	.	Alu	0.3
10	117369037	A->G	-	ENSG00000165650	PDZD8	protein_coding	Intergenic	.	.	Alu	0.117647
10	117369061	A->G	-	ENSG00000165650	PDZD8	protein_coding	Intergenic	.	.	Alu	0.142857
10	117369255	A->G	-	ENSG00000165650	PDZD8	protein_coding	Intergenic	.	.	Alu	0.3
12	118021748	A->G	+	ENSG00000111445	RFC5	protein_coding	Intergenic	.	.	Alu	0.181818
12	118021775	A->G	+	ENSG00000111445	RFC5	protein_coding	Intergenic	.	.	Alu	0.2
12	118021795	A->G	+	ENSG00000111445	RFC5	protein_coding	Intergenic	.	.	Alu	0.4
12	118193105	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	118193186	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.15
12	118193192	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.277778
12	118194814	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118194877	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.266667
12	118194886	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.3
12	118194913	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.153846
12	118194962	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.117647
12	118194983	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.357143
12	118194997	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.357143
12	118194998	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.153846
12	118195020	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118195026	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	118219630	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0909091
12	118219692	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.5
12	118219719	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0909091
12	118219735	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0869565
12	118219813	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.176471
12	118219822	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.176471
12	118221302	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.176471
12	118229211	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.125
12	118229303	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118310057	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.4
12	118351909	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.24
12	118351937	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.075
12	118351941	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0526316
12	118351985	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118352052	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0740741
12	118352053	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0714286
12	118352056	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.259259
12	118352284	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.105263
12	118352287	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.428571
12	118352382	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.454545
12	118356396	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0384615
12	118356415	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0909091
12	118356421	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.42623
12	118356422	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.145161
12	118356432	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.587302
12	118356437	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.416667
12	118356438	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0983607
12	118356445	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0363636
12	118356839	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0869565
12	118356840	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.272727
12	118356853	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0833333
12	118356900	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.222222
12	118356920	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.117647
12	118356922	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.111111
12	118361493	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118361525	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0869565
11	118446153	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.0952381
11	118446199	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.103448
11	118446202	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.111111
11	118446222	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.137931
11	118446229	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.294118
X	118664538	A->G	+	ENSG00000147251	DOCK11	protein_coding	Intergenic	.	.	Alu	0.272727
X	118692282	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
X	118692708	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	118692710	A->G	+	.	.	.	Intergenic	.	.	Alu	0.636364
X	118692718	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
X	118692750	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
X	118692776	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
X	118692786	A->G	+	.	.	.	Intergenic	.	.	Alu	0.35
X	118692854	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
4	118695989	A->G	+	ENSG00000145388	METTL14	protein_coding	Intergenic	.	.	Alu	0.105263
4	118695995	A->G	+	ENSG00000145388	METTL14	protein_coding	Intergenic	.	.	Alu	0.114286
11	118774537	A->G	-	ENSG00000110367	DDX6	protein_coding	Intergenic	.	.	Alu	0.0833333
11	118774641	A->G	-	ENSG00000110367	DDX6	protein_coding	Intergenic	.	.	Alu	0.416667
10	119062859	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.12
10	119062876	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.16129
10	119062949	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.133333
1	119131601	A->G	-	ENSG00000116874	WARS2	protein_coding	Intergenic	.	.	Alu	0.133333
6	119275714	A->G	-	ENSG00000111885	MAN1A1	protein_coding	Intergenic	.	.	Alu	0.3125
6	119275723	A->G	-	ENSG00000111885	MAN1A1	protein_coding	Intergenic	.	.	Alu	0.277778
3	119447904	A->G	-	ENSG00000176142	TMEM39A	protein_coding	Intergenic	.	.	Alu	0.3
3	119447906	A->G	-	ENSG00000176142	TMEM39A	protein_coding	Intergenic	.	.	Alu	0.3
10	119588426	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.0652174
10	119588625	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.181818
X	119624236	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.153846
X	119684593	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.0909091
X	119684670	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.105263
X	119684723	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.133333
X	119684750	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.142857
X	119687433	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.1875
X	119687521	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.157895
X	119687544	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.176471
8	119830031	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.142857
8	119830067	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.153846
8	119830103	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.2
8	119830171	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.5
8	120052558	A->G	+	ENSG00000254343	AC091563.1	lincRNA	Intergenic	.	.	Alu	0.363636
3	120078649	A->G	-	ENSG00000082701	GSK3B	protein_coding	Intergenic	.	.	Alu	0.2
12	120112148	A->G	-	ENSG00000111737	RAB35	protein_coding	Intergenic	.	.	Alu	0.181818
12	120112264	A->G	-	ENSG00000111737	RAB35	protein_coding	Intergenic	.	.	Alu	0.15
9	120511814	A->G	-	ENSG00000136861	CDK5RAP2	protein_coding	Intergenic	.	.	Alu	0.2
9	120511913	A->G	-	ENSG00000136861	CDK5RAP2	protein_coding	Intergenic	.	.	Alu	0.3
12	120544400	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.117647
12	120544442	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.133333
12	120544455	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.235294
12	120544527	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.111111
12	120544536	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.176471
12	120544550	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.25
12	120549623	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.3
12	120549624	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.2
12	120555930	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.133333
12	120556280	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0909091
12	120556410	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.178571
12	120556451	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.166667
12	120556476	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.1
12	120556949	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.272727
12	120556950	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.333333
12	120556952	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.15
12	120556965	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0833333
12	120556969	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.142857
12	120556975	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.115385
12	120556997	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0540541
12	120557013	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.16129
12	120557023	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0967742
12	120557029	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0625
12	120568102	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.166667
12	120568124	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.25
12	120568170	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.133333
12	120808160	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.727273
12	120808162	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.454545
12	120808197	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.545455
12	120808204	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.142857
12	120808242	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.1
12	120808247	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.117647
12	120808248	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.117647
12	120808256	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.571429
12	120808257	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.285714
12	120808270	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.125
12	120808292	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.25
12	120808294	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.357143
12	120808318	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.25
9	120823632	A->G	-	ENSG00000095261	PSMD5	protein_coding	Intergenic	.	.	Alu	0.272727
9	120826024	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.1
9	120833949	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.181818
9	120834049	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.0869565
9	120834209	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.181818
9	120839929	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.307692
9	120840282	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.181818
9	120840336	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.2
9	120840584	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.111111
9	120840597	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.125
9	120849278	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.352941
9	120849293	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.2
12	120863720	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.121212
12	120863734	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.234043
12	120863770	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.09375
12	120863964	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.111111
9	121082823	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.3
9	121082859	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.217391
9	121082891	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.166667
12	121321162	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.2
12	121321186	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.230769
12	121321189	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.357143
12	121321197	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.25
12	121321443	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.5
12	121321503	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.125
12	121335262	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.75
12	121335263	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.307692
12	121335290	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.133333
12	121335304	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.333333
12	121424530	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.416667
12	121424531	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.545455
12	121424548	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.166667
3	121507932	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.1875
3	121507956	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.111111
3	121507959	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.357143
3	121507975	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.583333
3	121507982	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.136364
3	121832464	A->G	-	ENSG00000173226	IQCB1	protein_coding	Intergenic	.	.	Alu	0.272727
3	121832465	A->G	-	ENSG00000173226	IQCB1	protein_coding	Intergenic	.	.	Alu	0.2
12	121891786	A->G	+	ENSG00000110801	PSMD9	protein_coding	Intergenic	.	.	Alu	0.2
12	121891821	A->G	+	ENSG00000110801	PSMD9	protein_coding	Intergenic	.	.	Alu	0.181818
12	122034507	A->G	+	ENSG00000110987	BCL7A	protein_coding	Intergenic	.	.	Alu	0.111111
12	122034697	A->G	+	ENSG00000110987	BCL7A	protein_coding	Intergenic	.	.	Alu	0.384615
12	122110198	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.0869565
12	122110211	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.125
12	122110220	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.2
12	122115482	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.190476
12	122403724	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.181818
12	122408949	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.190476
12	122408993	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.130435
12	122409083	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.157895
12	122409097	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.117647
12	122412134	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.125
12	122412142	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.684211
12	122412161	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.217391
12	122412184	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.0769231
12	122412201	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.0909091
12	122412243	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.222222
12	122412246	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.411765
12	122412555	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.263158
12	122412571	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.411765
12	122484325	A->G	-	ENSG00000033030	ZCCHC8	protein_coding	Intergenic	.	.	Alu	0.142857
12	122507823	A->G	-	ENSG00000111011	RSRC2	protein_coding	Intergenic	.	.	Alu	0.454545
12	122507824	A->G	-	ENSG00000111011	RSRC2	protein_coding	Intergenic	.	.	Alu	0.5
9	122817647	A->G	-	ENSG00000136940	PDCL	protein_coding	Intergenic	.	.	Alu	0.153846
9	122817648	A->G	-	ENSG00000136940	PDCL	protein_coding	Intergenic	.	.	Alu	0.133333
9	122817679	A->G	-	ENSG00000136940	PDCL	protein_coding	Intergenic	.	.	Alu	0.5
12	122890486	A->G	-	ENSG00000139722	VPS37B	protein_coding	Intergenic	.	.	Alu	0.2
9	122901652	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.111111
9	122901657	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0769231
9	122901689	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0909091
9	122901729	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0645161
9	122901748	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.142857
9	122901756	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.36
9	122901759	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.107143
9	122901785	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.185185
9	122901792	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.115385
9	122901831	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.181818
9	122901870	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.111111
9	122901876	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.277778
9	122902134	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.166667
9	122942590	A->G	+	ENSG00000011454	RABGAP1	protein_coding	Intergenic	.	.	Alu	0.4
9	122942591	A->G	+	ENSG00000011454	RABGAP1	protein_coding	Intergenic	.	.	Alu	0.363636
9	122949575	A->G	+	ENSG00000011454	RABGAP1	protein_coding	Intergenic	.	.	Alu	0.133333
10	123001072	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.35
10	123001082	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.117647
10	123001144	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.190476
8	123032312	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.3
8	123032314	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.2
8	123032386	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.181818
8	123032416	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.214286
8	123032921	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0571429
8	123032924	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.342857
8	123032925	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.114286
8	123032936	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0571429
8	123032942	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.651163
8	123032954	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.047619
8	123032961	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0857143
8	123032969	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0666667
8	123032983	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0857143
8	123032990	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.116279
8	123033000	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.735294
8	123033008	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0857143
8	123033010	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0571429
8	123033022	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0909091
8	123033025	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.354839
8	123033028	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0540541
8	123033138	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.422222
8	123033527	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.7
12	123158122	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.352941
12	123158127	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.5
12	123158128	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.1875
12	123158157	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.157895
12	123158158	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.15
12	123158194	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.217391
12	123158203	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.133333
12	123158208	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.333333
12	123158209	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.666667
12	123158221	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.545455
12	123158268	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.2
12	123159216	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.3
9	123227703	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.3
9	123227704	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.2
9	123248335	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.3
9	123248392	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.125
9	123248405	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.190476
9	123248466	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.222222
9	123248468	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.111111
9	123248490	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.125
9	123248543	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.181818
9	123256115	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.142857
9	123256156	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.0681818
9	123256162	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.289474
9	123256217	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.0714286
9	123256218	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.103448
9	123256246	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.15625
12	123323390	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.214286
12	123323418	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	1
12	123323493	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.263158
12	123323626	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.272727
12	123323627	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.272727
12	123323633	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.272727
8	123344460	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0869565
8	123344474	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.12069
8	123344478	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0615385
8	123344484	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.078125
12	123348877	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.363636
12	123348878	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.2
12	123349224	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.2
12	123349228	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.133333
8	123350760	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0363636
8	123351886	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.125
8	123379665	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.133333
8	123388517	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.2
12	123409765	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
12	123409927	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
12	123421940	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.333333
12	123421941	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.333333
12	123422590	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.4
12	123422608	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.416667
8	123442345	A->G	+	ENSG00000156795	WDYHV1	protein_coding	Intergenic	.	.	Alu	0.454545
12	123624497	A->G	-	ENSG00000111361	EIF2B1	protein_coding	Intergenic	.	.	Alu	0.3
12	123755275	A->G	+	ENSG00000185344	ATP6V0A2	protein_coding	Intergenic	.	.	Alu	0.0952381
X	123972769	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.111111
X	123972942	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.107143
X	123972969	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.0952381
X	123972999	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.130435
X	123973342	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.181818
9	124382014	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0350877
9	124382038	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.293103
9	124382041	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0727273
9	124382067	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.108108
9	124382125	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.5
9	124382131	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.6
9	124382141	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.333333
9	124382182	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.6
9	124382346	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.05
9	124382366	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0294118
9	124382424	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.229167
9	124382432	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.128205
9	124382435	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0487805
9	124382445	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.219512
9	124382480	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.148936
9	124382481	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.106383
9	124382483	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.255319
9	124403929	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.1
9	124403984	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.125
9	124404030	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.272727
9	124404098	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.181818
10	124772566	A->G	-	ENSG00000258539	AC068896.1	protein_coding	Intergenic	.	.	Alu	0.210526
10	124923339	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	1
10	124923408	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.473684
10	124923473	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.111111
10	124923474	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.368421
10	124923500	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.375
9	125138526	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.384615
9	125138598	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.5
9	125158758	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.227273
9	125158759	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.130435
9	125158847	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0952381
9	125159101	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.2
9	125159141	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.15
9	125163940	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.133333
9	125166606	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0740741
9	125166670	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0714286
9	125166703	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.125
9	125167015	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.363636
9	125167016	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.454545
9	125179686	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.125
9	125179732	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.230769
9	125179929	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.2
9	125187440	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.230769
9	125187443	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.133333
9	125187448	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.6875
9	125187526	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.272727
9	125187565	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.166667
3	125241358	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.142857
9	125317478	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.285714
9	125317482	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.2
9	125317504	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.222222
9	125322906	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.181818
9	125322919	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.181818
3	125362657	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.4
3	125362732	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.3
3	125362734	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.2
3	125363746	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.217391
3	125363752	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.0952381
3	125363814	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.571429
3	125363857	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.8125
8	125367313	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
2	126677966	A->G	+	ENSG00000136732	GYPC	protein_coding	Intergenic	.	.	Alu	0.0588235
2	126677967	A->G	+	ENSG00000136732	GYPC	protein_coding	Intergenic	.	.	Alu	0.0588235
2	127334846	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.272727
2	127351979	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.153846
2	127352096	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.2
2	127352128	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.5
2	127352136	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.416667
2	127366947	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.105263
2	127366999	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.105263
2	127367008	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.368421
2	127367009	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.263158
2	127368878	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.2
2	127368884	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.5
2	127384777	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.142857
2	127732334	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.363636
2	127754543	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0909091
2	127754557	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0869565
2	127754623	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0625
2	127754674	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0740741
2	127754702	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.136364
2	127754709	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0869565
2	127754718	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.105263
2	127783665	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.529412
2	127783694	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.1
2	127783716	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.133333
2	127783742	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.4375
2	127783743	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.375
2	127783769	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.285714
2	127783825	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.181818
2	127786465	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.2
2	127786520	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.3
2	127786571	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.272727
9	127791038	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
9	127791048	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
9	127791836	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
9	127791842	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
9	127791852	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
9	127791859	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
9	127791867	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
9	127791880	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
9	127791897	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
9	127791902	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
9	127791905	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0689655
9	127791963	A->G	+	.	.	.	Intergenic	.	.	Alu	0.277778
9	127791964	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
9	127791997	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
9	127792043	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
9	127792057	A->G	+	.	.	.	Intergenic	.	.	Alu	0.294118
9	127792084	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
9	127792085	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
9	127792109	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
9	127792116	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
9	127792385	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
9	127792393	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
9	127792405	A->G	+	.	.	.	Intergenic	.	.	Alu	0.321429
9	127792406	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0714286
9	127792418	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
9	127795079	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.1
9	127795084	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.142857
9	127795222	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.2
9	127795390	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0740741
9	127795400	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0645161
9	127795414	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0689655
9	127795417	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0714286
9	127795482	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.133333
9	127795487	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.117647
9	127795557	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.125
9	127795615	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.75
9	127795621	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.125
2	127796554	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.5
2	127805112	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.107143
2	127805120	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0571429
2	127805175	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0625
2	127805216	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0588235
9	127805286	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0606061
2	127805301	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0833333
9	127805306	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.5
2	127805316	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.193548
9	127805324	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.682927
2	127805328	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0740741
2	127805340	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0869565
9	127805351	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0625
2	127805363	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.133333
9	127805365	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.5
9	127805375	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0714286
9	127805392	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0731707
9	127805398	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.295455
4	128010482	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.133333
4	128010484	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.133333
4	128010841	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.5
4	128010847	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.368421
4	128010892	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.384615
4	128010893	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.25
8	128015520	A->G	+	ENSG00000249859	PVT1	lincRNA	Intergenic	.	.	Alu	0.636364
8	128015521	A->G	+	ENSG00000249859	PVT1	lincRNA	Intergenic	.	.	Alu	0.5
8	128015564	A->G	+	ENSG00000249859	PVT1	lincRNA	Intergenic	.	.	Alu	0.727273
4	128031356	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.1875
4	128031364	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.111111
9	128378430	A->G	+	ENSG00000167118	URM1	protein_coding	Intergenic	.	.	Alu	0.2
9	128469721	A->G	+	ENSG00000136811	ODF2	protein_coding	Intergenic	.	.	Alu	0.181818
7	128550734	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
7	128550776	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	128550965	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128550966	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128551121	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128553310	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128553311	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.222222
7	128553328	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.272727
7	128553642	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	128553683	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
7	128572382	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128572383	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.0740741
7	128572391	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.32
7	128572481	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128572484	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	128572492	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	128572496	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.125
7	128572518	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.625
7	128572559	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.363636
7	128572560	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.15
7	128572571	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.105263
7	128574494	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
9	128606186	A->G	+	ENSG00000197694	SPTAN1	protein_coding	Intergenic	.	.	Alu	0.2
7	128633647	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
7	128633683	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
7	128633707	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
7	128633817	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	128734228	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.1875
3	128734248	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.142857
3	128734310	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0540541
3	128734311	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.075
3	128740287	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.307692
3	128740654	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.321429
3	128740694	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0769231
3	128740816	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.26087
3	128740855	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0909091
3	128740856	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0869565
3	128740876	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.117647
3	128744154	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.181818
3	128744168	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.666667
3	128744173	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.214286
3	128744208	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.166667
7	128750183	A->G	+	ENSG00000128595	CALU	protein_coding	Intergenic	.	.	Alu	0.272727
3	128811592	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.363636
3	128811593	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.181818
4	128965899	A->G	-	ENSG00000151466	SCLT1	protein_coding	Intergenic	.	.	Alu	0.230769
4	128965900	A->G	-	ENSG00000151466	SCLT1	protein_coding	Intergenic	.	.	Alu	0.642857
4	128965928	A->G	-	ENSG00000151466	SCLT1	protein_coding	Intergenic	.	.	Alu	0.428571
4	128965929	A->G	-	ENSG00000151466	SCLT1	protein_coding	Intergenic	.	.	Alu	0.571429
7	129227541	A->G	+	ENSG00000158467	AHCYL2	protein_coding	Intergenic	.	.	Alu	0.181818
3	129262905	A->G	+	ENSG00000181789	COPG1	protein_coding	Intergenic	.	.	Alu	0.272727
3	129799585	A->G	-	ENSG00000172765	TMCC1	protein_coding	Intergenic	.	.	Alu	0.166667
3	129799589	A->G	-	ENSG00000172765	TMCC1	protein_coding	Intergenic	.	.	Alu	0.333333
3	129799597	A->G	-	ENSG00000172765	TMCC1	protein_coding	Intergenic	.	.	Alu	0.2
7	129843137	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.666667
7	129843163	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.230769
8	129897985	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.1
8	129898036	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.277778
7	129906273	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.384615
7	129906274	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.307692
8	129910563	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.322581
8	129910746	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.583333
8	129910758	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.133333
8	129910790	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.545455
8	129910885	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.142857
8	129910908	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.272727
8	129910909	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.181818
9	129913671	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.333333
9	129913948	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.214286
9	129913964	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	129913967	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.117647
9	129913971	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3125
9	129914012	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.266667
9	129914016	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	129914023	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.08
9	129914026	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.12
9	129914039	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.148148
9	129914098	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.266667
9	129914137	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0714286
9	129921461	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.111111
9	129921462	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.1
9	129921514	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0952381
9	129921704	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.133333
9	129923322	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0833333
9	129923324	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0833333
9	129925820	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.142857
9	129925849	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.25
9	129925866	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.307692
9	129930199	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.2
9	129930225	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.133333
9	129930229	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.176471
9	129930278	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.125
9	129930281	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.142857
9	129930282	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.214286
9	129930313	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.263158
9	129930330	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0909091
9	129948205	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
9	129948232	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.583333
9	129948427	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.2
9	129948489	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.307692
9	129948502	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.133333
9	129948503	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.666667
9	129948744	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.133333
9	129950891	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.368421
9	129950918	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.294118
9	129951064	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.285714
9	129951105	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	129951108	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.272727
9	129951117	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.4
9	129951165	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.1875
8	130001596	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.181818
8	130001621	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.210526
8	130001625	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.411765
8	130001640	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.263158
8	130001657	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.333333
8	130001667	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.7
8	130001687	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.26087
8	130001746	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.192308
8	130001747	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.115385
8	130001753	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.12
8	130004364	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.142857
8	130004895	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0740741
8	130004904	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.105263
8	130004905	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.210526
8	130005039	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.230769
9	130017585	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.153846
9	130017708	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.25
9	130017718	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	130017747	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
9	130031799	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.176471
9	130031852	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.153846
2	130168671	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.25
2	130168695	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.272727
2	130168784	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.142857
2	130168854	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.2
2	130168859	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.266667
2	130168882	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.181818
9	130582269	A->G	+	ENSG00000107164	FUBP3	protein_coding	Intergenic	.	.	Alu	0.0952381
9	130705115	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
9	130705134	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
3	131008223	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.166667
3	131008306	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.2
3	131008307	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.166667
2	131118663	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.142857
2	131118677	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.0952381
2	131118678	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.1
2	131118718	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.117647
2	131118747	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.166667
2	131129231	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.166667
2	131129270	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.0909091
2	131129275	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.142857
2	131129280	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.166667
2	131129282	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.105263
2	131129553	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.25
2	131129568	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.166667
2	131129604	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.111111
2	131129641	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.166667
5	131270244	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0952381
5	131270260	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	1
5	131276251	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.2
5	131276338	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.214286
5	131276342	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131276369	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.166667
5	131292448	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0425532
5	131292493	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0512821
5	131292644	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0392157
5	131292649	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0425532
5	131292705	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0625
5	131292717	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0540541
5	131293527	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0769231
5	131319802	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	131319873	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0425532
5	131319874	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0652174
5	131319894	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.047619
5	131319899	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0487805
5	131319900	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0487805
5	131319904	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.367347
5	131319930	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.075
5	131319936	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.047619
5	131319983	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.428571
5	131319986	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.133333
5	131319992	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.25
5	131320038	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131320272	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0540541
5	131320565	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.117647
5	131320566	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.176471
5	131320571	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131320583	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131320595	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.176471
5	131320599	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131320621	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.173913
5	131320622	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.416667
5	131320631	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	131320657	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.352941
5	131338986	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0350877
5	131338993	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.046875
5	131338994	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	131339060	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0365854
5	131339062	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0379747
5	131339101	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.102041
5	131339137	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0555556
5	131339193	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0540541
5	131339597	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	131339600	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.1
5	131342169	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.181818
5	131343565	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.363636
5	131343670	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	131368066	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.272727
5	131368068	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.2
9	131398893	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.142857
9	131399100	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.157895
9	131399155	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0952381
9	131399169	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0769231
9	131399196	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.115385
9	131399322	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131399363	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.142857
9	131399392	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.153846
9	131399524	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.142857
9	131424445	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.133333
9	131424500	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.15625
9	131424501	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.354839
9	131424511	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0625
9	131424559	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.178571
9	131424565	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.3125
9	131424566	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.258065
9	131424625	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.222222
9	131424636	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.230769
9	131425246	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131425553	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.25
9	131425617	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.166667
9	131425889	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.272727
9	131426082	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0789474
9	131426083	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.097561
9	131426100	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.113636
9	131426152	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.108434
9	131426157	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2375
9	131426160	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0384615
9	131426161	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.037037
9	131426182	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0322581
9	131426187	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.08
9	131426207	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0384615
9	131426211	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.148148
9	131426218	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.037037
9	131426223	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0350877
9	131426231	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.395833
9	131426287	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.375
9	131426288	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131426323	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.538462
9	131426324	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.142857
9	131448306	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0540541
9	131448423	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.8
9	131448583	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.5
9	131462679	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131462731	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.272727
9	131481047	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.125
2	131504231	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.3
2	131504240	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.166667
2	131504925	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
2	131506716	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.272727
5	131511589	A->G	-	ENSG00000158987	RAPGEF6	protein_coding	Intergenic	.	.	Alu	0.3
5	131541588	A->G	-	ENSG00000158987	RAPGEF6	protein_coding	Intergenic	.	.	Alu	0.0952381
9	131632020	A->G	-	ENSG00000107263	RAPGEF1	protein_coding	Intergenic	.	.	Alu	0.3
5	131647670	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.25
5	131647708	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.181818
5	131687234	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.25
X	131742651	A->G	-	ENSG00000213468	FIRRE	lincRNA	Intergenic	.	.	Alu	0.2
X	131743927	A->G	-	ENSG00000213468	FIRRE	lincRNA	Intergenic	.	.	Alu	0.9
5	131775731	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.3
5	131775765	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.545455
10	131902865	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.6875
10	131902886	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.666667
10	131902906	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.1
10	131902952	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.153846
10	131903004	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.916667
10	131903012	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.181818
10	131903013	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.545455
10	131903217	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.0869565
10	131903233	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.190476
10	131903268	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.103448
10	131903311	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.615385
10	131903313	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.307692
10	131903336	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.16
10	131903373	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.25
10	131903382	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.5
10	131903387	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.263158
10	131906834	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.0769231
12	132652450	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.117647
12	132652523	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.1875
12	132652570	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.133333
12	132652574	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.111111
12	132652612	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.157895
12	132654345	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.142857
12	132654368	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.166667
12	132656487	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.56
12	132656497	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.08
12	132656523	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.214286
5	132917823	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.157895
5	132917845	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.125
5	132917850	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0909091
5	132917851	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.136364
5	132917877	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0769231
5	132917884	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.08
5	132917903	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.3
5	132917940	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.352941
5	132918136	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.545455
5	132918238	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.181818
5	132918562	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.2
5	132921558	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.133333
5	132921585	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921605	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.105263
5	132921608	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0909091
5	132921628	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.176471
5	132921632	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.117647
5	132921986	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.230769
5	132921988	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.153846
5	132922064	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.7
5	132926634	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0392157
5	132926639	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0754717
5	132942874	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.4
5	132942899	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.3125
5	132951660	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.117647
5	132951736	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.272727
5	132953378	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.2
5	132953468	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.2
5	132953487	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.363636
5	133078211	A->G	+	ENSG00000170606	HSPA4	protein_coding	Intergenic	.	.	Alu	0.5
5	133078474	A->G	+	ENSG00000170606	HSPA4	protein_coding	Intergenic	.	.	Alu	0.166667
9	133267142	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.0588235
9	133267185	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.181818
9	133267217	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.153846
9	133267231	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.166667
9	133267293	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.142857
9	133267307	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.166667
9	133267600	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.181818
9	133267622	A->G	-	ENSG00000175164	ABO	protein_coding	Intergenic	.	.	Alu	0.133333
8	133497565	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.166667
8	133520881	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.2
5	134206577	A->G	-	ENSG00000272772	AC104109.3	protein_coding	Intergenic	.	.	Alu	0.117647
5	134378899	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.214286
5	134379552	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.125
5	134379567	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.1875
5	134379590	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.444444
5	134379591	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.352941
5	134382762	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0909091
5	134386217	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0769231
5	134386410	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.285714
5	134386415	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.2
5	134386420	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.214286
5	134386512	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.125
5	134386538	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.107143
5	134386622	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0740741
5	134399804	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.125
5	134399820	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.25
5	134744283	A->G	+	ENSG00000164615	CAMLG	protein_coding	Intergenic	.	.	Alu	0.2
5	134904056	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
5	134904066	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
2	135340100	A->G	-	ENSG00000121988	ZRANB3	protein_coding	Intergenic	.	.	Alu	0.307692
2	135340134	A->G	-	ENSG00000121988	ZRANB3	protein_coding	Intergenic	.	.	Alu	0.181818
2	135340135	A->G	-	ENSG00000121988	ZRANB3	protein_coding	Intergenic	.	.	Alu	0.3
7	135474091	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.166667
7	135474117	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.4
7	135474173	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.166667
7	135474183	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.142857
7	135474184	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.142857
7	135474251	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.157895
7	135474347	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.133333
7	135474381	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.2
7	135474423	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.285714
7	135479271	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.114286
7	135479305	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.1
7	135479317	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.153846
7	135479347	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.613636
7	135479379	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.0625
7	135479388	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.133333
7	135479410	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.12
7	135479419	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.285714
7	135479437	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.1
7	135479481	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.192308
7	135479482	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.0769231
7	135479641	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.105263
7	135479650	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.210526
7	135479714	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.153846
7	135479768	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.272727
7	135479803	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.333333
7	135479828	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.6
7	135504433	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.185185
7	135504434	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.346154
7	135505508	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.166667
2	135747227	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.230769
2	135747228	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.230769
2	135747268	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.266667
2	135747269	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.133333
2	135747280	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.636364
2	135747290	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.823529
2	135748640	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0540541
2	135748664	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.103448
2	135748820	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0444444
2	135748843	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.05
2	135748844	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0714286
2	135748916	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0925926
2	135748943	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0606061
2	135749029	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0625
2	135771689	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.3
2	135771729	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.3
2	135777922	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.2
2	135778056	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.3125
2	135778062	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.111111
2	135778083	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.142857
2	135778164	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.1875
3	136178629	A->G	-	ENSG00000174579	MSL2	protein_coding	Intergenic	.	.	Alu	0.2
3	136178661	A->G	-	ENSG00000174579	MSL2	protein_coding	Intergenic	.	.	Alu	0.153846
3	136179059	A->G	-	ENSG00000174579	MSL2	protein_coding	Intergenic	.	.	Alu	0.0769231
3	136440769	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.461538
3	136440772	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.583333
3	136440797	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.1875
3	136440833	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.307692
3	136440880	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.461538
3	136440881	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.916667
3	136440894	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.5
3	136440903	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.125
3	136441135	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.142857
3	136441170	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.722222
3	136441171	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.277778
6	136663754	A->G	-	ENSG00000197442	MAP3K5	protein_coding	Intergenic	.	.	Alu	0.181818
6	136663756	A->G	-	ENSG00000197442	MAP3K5	protein_coding	Intergenic	.	.	Alu	0.3
6	136663778	A->G	-	ENSG00000197442	MAP3K5	protein_coding	Intergenic	.	.	Alu	0.153846
3	136700531	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136700571	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.190476
3	136708958	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136715285	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.315789
3	136715292	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.214286
3	136715365	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.857143
3	136715376	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.6
X	136724350	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.333333
X	136724351	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.5
X	136724357	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.363636
X	136724359	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.2
3	136729635	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0444444
3	136729669	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0943396
3	136729705	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0392157
3	136729710	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.113636
3	136729711	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0434783
3	136729774	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0689655
3	136729775	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0666667
3	136729951	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.125
3	136735180	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0571429
3	136735234	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0740741
3	136735241	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136735250	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136735264	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.166667
3	136735325	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.08
3	136744752	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.075
3	136744814	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.102564
3	136744869	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.1
3	136744879	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0714286
3	136744880	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0714286
3	136744951	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136744955	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.458333
9	136818242	A->G	+	ENSG00000196642	RABL6	protein_coding	Intergenic	.	.	Alu	0.181818
X	136871784	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.111111
X	136877210	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.285714
X	136877220	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.142857
X	136877272	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.157895
X	136877527	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.12
X	136877553	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.142857
X	136877559	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.1
3	136880107	A->G	+	ENSG00000158092	NCK1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136880132	A->G	+	ENSG00000158092	NCK1	protein_coding	Intergenic	.	.	Alu	0.266667
3	136880138	A->G	+	ENSG00000158092	NCK1	protein_coding	Intergenic	.	.	Alu	0.153846
3	136898309	A->G	+	ENSG00000158092	NCK1	protein_coding	Intergenic	.	.	Alu	0.142857
3	136898317	A->G	+	ENSG00000158092	NCK1	protein_coding	Intergenic	.	.	Alu	0.214286
3	136898318	A->G	+	ENSG00000158092	NCK1	protein_coding	Intergenic	.	.	Alu	0.142857
9	137207890	A->G	+	ENSG00000188566	NDOR1	protein_coding	Intergenic	.	.	Alu	0.2
6	137857283	A->G	-	ENSG00000237499	AL357060.1	antisense	Intergenic	.	.	Alu	0.388889
5	137923162	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.1875
5	137979042	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.08
5	137979048	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.181818
5	137979109	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.153846
5	137979150	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.25
5	137979177	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.363636
5	137979205	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.2
5	137979214	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.214286
5	137979216	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.142857
5	137979226	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.333333
5	137979285	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.416667
5	137979294	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.2
5	137980581	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.0909091
5	137980607	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.0909091
5	137980970	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.181818
5	137981027	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.0952381
5	137981365	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.1
5	137981385	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.1875
5	137981403	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.25
7	137995605	A->G	-	ENSG00000182158	CREB3L2	protein_coding	Intergenic	.	.	Alu	0.181818
7	137995606	A->G	-	ENSG00000182158	CREB3L2	protein_coding	Intergenic	.	.	Alu	0.166667
5	137999190	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.181818
5	137999192	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.181818
5	137999211	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.461538
5	137999237	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.5
5	138002273	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.172414
5	138002303	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.241379
5	138002346	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.448276
5	138002358	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.0740741
5	138002359	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.107143
5	138002407	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.181818
5	138002409	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.608696
5	138002419	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.791667
5	138002445	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.485714
5	138002488	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.137931
5	138002774	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.153846
5	138002794	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.25
5	138002798	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.266667
5	138002804	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.428571
5	138002810	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.117647
5	138416312	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.142857
5	138416335	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.142857
5	138416404	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.125
5	138416425	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.111111
5	138416437	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.1
5	138416474	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.25
5	138416475	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.388889
5	138416874	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.25
5	138416885	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.125
5	138416890	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.117647
5	138416947	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.111111
5	138416954	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.5
5	138417095	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.117647
2	138505495	A->G	+	ENSG00000144228	SPOPL	protein_coding	Intergenic	.	.	Alu	0.125
2	138505501	A->G	+	ENSG00000144228	SPOPL	protein_coding	Intergenic	.	.	Alu	0.125
2	138505654	A->G	+	ENSG00000144228	SPOPL	protein_coding	Intergenic	.	.	Alu	0.0816327
7	138509448	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.846154
7	138509449	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.25
7	138509492	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.157895
7	138509512	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.142857
7	138509537	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.2
7	138509584	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.428571
7	138509610	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.181818
5	138524441	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.190476
5	138524444	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.227273
5	138524458	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.181818
5	138524710	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.0869565
5	138524716	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.12
2	138584575	A->G	+	.	.	.	Intergenic	.	.	Alu	0.545455
2	138584617	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
6	138969414	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.05
6	138969526	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.136364
6	138978401	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.15
5	138996616	A->G	-	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.181818
4	139020844	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.153846
4	139020862	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.363636
4	139021224	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.2
4	139021236	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.133333
4	139021237	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.2
4	139021254	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.333333
4	139021263	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.133333
4	139021265	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.307692
4	139021385	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.166667
4	139050993	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.153846
7	139051703	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.2
7	139051710	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.4
7	139056507	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.125
7	139056522	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.4375
7	139056571	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.416667
7	139056625	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.153846
7	139056626	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.142857
7	139056634	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.307692
7	139056688	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.363636
7	139076673	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.272727
4	139088761	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.105263
4	139096516	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0909091
4	139096582	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0769231
4	139096586	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.208333
4	139096590	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.08
4	139096749	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.35
4	139102963	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.454545
7	139103156	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.0571429
7	139103162	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.0555556
7	139103323	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.25
4	139106840	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.166667
4	139106881	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.153846
4	139106882	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.153846
4	139106908	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.117647
4	139106949	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.190476
4	139106953	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0869565
4	139106963	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0689655
4	139106992	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.173913
4	139107018	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.230769
4	139107019	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139114412	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139114421	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.2
4	139114447	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.333333
4	139114457	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.2
4	139114486	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.166667
4	139114487	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.130435
4	139114511	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139114525	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.266667
4	139148012	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.181818
4	139148250	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.05
4	139148449	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0714286
4	139148450	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0731707
5	139284349	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.233333
5	139284494	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.15
5	139284528	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.181818
5	139284573	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.136364
5	139304268	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.266667
5	139304280	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.387097
5	139304324	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.102564
5	139304325	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.236842
5	139338470	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
5	139338603	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
5	139338607	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
4	139341452	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.3
5	139348025	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.2
5	139348047	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.166667
5	139348058	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.181818
5	139349302	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.125
5	139349352	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.1875
5	139349353	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.294118
5	139349382	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.647059
5	139349458	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.25
5	139349521	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.230769
5	139349527	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.142857
5	139349740	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.266667
5	139349742	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.4375
5	139349843	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.133333
5	139349855	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.117647
5	139350107	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.272727
5	139350510	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.166667
5	139350516	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.2
5	139356693	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.230769
7	139368562	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0909091
7	139368585	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0555556
7	139368595	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0952381
7	139368617	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0697674
7	139368618	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0465116
7	139368658	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.285714
7	139368659	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.233333
7	139368663	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	1
7	139370481	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.611111
7	139370497	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.136364
7	139370532	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.15
7	139370544	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.133333
7	139370551	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.529412
7	139370557	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.416667
7	139370558	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.173913
7	139378387	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.5
7	139378392	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.153846
7	139378408	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.153846
7	139378475	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.142857
3	139388658	A->G	-	ENSG00000184432	COPB2	protein_coding	Intergenic	.	.	Alu	0.1875
4	139400788	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.166667
4	139400816	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.2
4	139400829	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0769231
4	139400834	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.115385
4	139400835	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.16
4	139400894	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.125
4	139400915	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0588235
4	139400929	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0526316
4	139400956	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.151515
4	139400957	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0909091
4	139400965	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0909091
4	139401023	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0465116
4	139401024	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.047619
4	139407220	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.1
4	139407226	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.5
4	139407234	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.277778
4	139407255	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.285714
5	139568527	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.1
5	139568537	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.103448
5	139568872	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.142857
5	139573047	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.214286
5	139573141	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.166667
5	139573181	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	139573222	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.12
5	139585889	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.166667
5	139590249	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	139590285	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.210526
5	139590314	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.1
5	139590315	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.105263
5	139603708	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.363636
4	139742260	A->G	-	ENSG00000196782	MAML3	protein_coding	Intergenic	.	.	Alu	0.2
4	139883978	A->G	-	ENSG00000196782	MAML3	protein_coding	Intergenic	.	.	Alu	0.153846
7	140011157	A->G	+	ENSG00000059377	TBXAS1	protein_coding	Intergenic	.	.	Alu	0.8
4	140145739	A->G	-	ENSG00000196782	MAML3	protein_coding	Intergenic	.	.	Alu	0.181818
4	140145835	A->G	-	ENSG00000196782	MAML3	protein_coding	Intergenic	.	.	Alu	0.3
5	140422731	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.105263
5	140422760	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.166667
5	140469390	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	1
5	140469404	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0701754
5	140469451	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.145833
5	140469452	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0612245
5	140469457	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0408163
5	140536155	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.15
5	140536187	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.619048
5	140536193	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.185185
5	140536194	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.142857
5	140536211	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.107143
5	140536223	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0952381
5	140536233	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.105263
5	140536356	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.3
5	140536368	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.4
5	140536769	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.6
5	140536838	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.1875
5	140536858	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.642857
5	140536869	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.111111
5	140536901	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.190476
5	140536910	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.55
5	140536942	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.333333
5	140536946	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.166667
5	140536955	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.117647
5	140536971	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.4
5	140542438	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.25
5	140542444	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.117647
5	140542543	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.181818
5	140542551	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.5
8	140553324	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.272727
8	140553332	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.833333
8	140553547	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.416667
8	140553548	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.818182
8	140553704	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.2
8	140553795	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.333333
8	140553796	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.181818
8	140553810	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.3
8	140633041	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.153846
7	140798339	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0588235
7	140798704	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.146341
7	140815171	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.285714
7	140815173	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.529412
7	140815235	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.421053
7	140815266	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.217391
7	140815270	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.44
7	140815276	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.142857
7	140815347	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0952381
7	140815417	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.538462
7	140815418	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.153846
7	140815466	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0952381
7	140815494	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.315789
7	140815510	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.176471
7	140815522	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.363636
7	140815554	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.2
7	140815566	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.166667
7	140815571	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.111111
7	140815598	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.166667
7	140821372	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.272727
7	140897659	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.3
7	140897728	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.7
7	140897955	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.230769
7	140903085	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.538462
7	140903089	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.384615
7	140907400	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.173913
7	140907426	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.133333
7	140907439	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.1875
7	140907440	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.2
7	140907603	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.166667
7	140909243	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.153846
7	140913551	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	1
7	140913615	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0526316
7	140913647	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0714286
3	141892578	A->G	+	ENSG00000069849	ATP1B3	protein_coding	Intergenic	.	.	Alu	0.0666667
3	141975092	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.3
3	141975093	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.2
3	141975096	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.2
3	142007069	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.133333
3	142018539	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	142090731	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	142090762	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.117647
5	142129783	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.166667
5	142136491	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.2
5	142136497	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.363636
5	142136794	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.133333
5	142136810	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.285714
5	142136811	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	142136977	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	1
3	142316249	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.142857
3	142323092	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.235294
3	142323093	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.117647
3	142323370	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.272727
3	142323375	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.2
3	142323428	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.3
3	142323727	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.4
3	142482602	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.181818
3	142482610	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.25
3	142482614	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.571429
3	142482615	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.153846
3	142483089	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.125
3	142483102	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.272727
3	142483108	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.266667
3	142483138	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.157895
3	142483144	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.25
3	142543724	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.666667
3	142543794	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.526316
3	142543798	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.5
3	142543808	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.944444
3	142543834	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.526316
3	142543874	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.933333
3	142543875	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.8125
3	142543898	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.25
3	142543950	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.214286
5	142998759	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.1
5	143048654	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.181818
5	143048660	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.3
5	143048661	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.166667
5	143048666	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.416667
5	143048892	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.25
2	143239911	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.2
2	143272510	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.25
2	143272598	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	1
2	143272604	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.230769
2	143272605	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.153846
2	143372195	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.0833333
2	143373375	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.590909
2	143373376	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.863636
2	143373422	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.3125
2	143373442	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.148148
2	143373445	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.115385
2	143373448	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.142857
2	143373452	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.222222
2	143373464	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.148148
2	143373483	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.129032
2	143373509	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.842105
2	143373515	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.368421
2	143373575	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.111111
2	143373584	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.0666667
4	143394019	A->G	+	ENSG00000109458	GAB1	protein_coding	Intergenic	.	.	Alu	0.181818
2	143605750	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.483871
2	143605827	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.285714
2	143605828	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.733333
2	143605899	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.5
2	143605915	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.1
2	143605921	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.318182
2	143605925	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.0952381
2	143605933	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.238095
2	143605956	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.4
2	143605957	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.3125
2	143605958	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.117647
2	143605968	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.117647
2	143606023	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.153846
2	143736124	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.3
2	143736305	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.2
8	144292847	A->G	+	ENSG00000185122	HSF1	protein_coding	Intergenic	.	.	Alu	0.153846
6	144657156	A->G	+	ENSG00000152818	UTRN	protein_coding	Intergenic	.	.	Alu	0.833333
1	145774514	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.25
1	145775092	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145776233	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.15
1	145776302	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.25
1	145776332	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.25
1	145776337	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145776339	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145776396	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.166667
1	145776410	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.384615
1	145776714	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.2
1	145782014	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.676471
1	145782059	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0769231
1	145782124	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.111111
1	145782151	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.133333
1	145782172	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.4
1	145782177	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.3125
1	145782178	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.3125
1	145793981	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.166667
1	145793982	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.16129
1	145793992	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.136364
1	145794008	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.176471
1	145799206	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.166667
1	145809279	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145809423	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.133333
1	145809430	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.142857
1	145835199	A->G	+	ENSG00000186141	POLR3C	protein_coding	Intergenic	.	.	Alu	0.454545
5	146249579	A->G	+	ENSG00000275740	AC091959.3	protein_coding	Intergenic	.	.	Alu	0.25
5	146258898	A->G	+	ENSG00000275740	AC091959.3	protein_coding	Intergenic	.	.	Alu	0.2
5	146260038	A->G	+	ENSG00000275740	AC091959.3	protein_coding	Intergenic	.	.	Alu	0.142857
5	146260044	A->G	+	ENSG00000275740	AC091959.3	protein_coding	Intergenic	.	.	Alu	0.125
1	146941347	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.5
1	146941660	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.272727
1	146941675	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.235294
1	146941709	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.421053
1	146941711	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.238095
1	147288071	A->G	+	ENSG00000131778	CHD1L	protein_coding	Intergenic	.	.	Alu	0.272727
6	147290127	A->G	+	ENSG00000164506	STXBP5	protein_coding	Intergenic	.	.	Alu	0.181818
6	147290133	A->G	+	ENSG00000164506	STXBP5	protein_coding	Intergenic	.	.	Alu	0.2
1	147963363	A->G	+	ENSG00000188092	GPR89B	protein_coding	Intergenic	.	.	Alu	0.125
2	148293064	A->G	+	ENSG00000204406	MBD5	protein_coding	Intergenic	.	.	Alu	0.3
7	148838213	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.1875
7	148838246	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0571429
7	148838257	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0714286
7	148838268	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.2
7	148869406	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.08
7	148869435	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0909091
7	148869438	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0606061
7	148869443	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0571429
7	148869456	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0967742
7	148869465	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0857143
7	148869632	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.192308
7	148871686	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.2
7	148871699	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.181818
7	149243208	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.0952381
7	149243210	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.333333
7	149243246	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.142857
7	149243250	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.222222
7	149243278	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.1
7	149243299	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.380952
7	149243340	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.230769
7	149245094	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.538462
7	149245120	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.666667
7	149245184	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.416667
7	149245187	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.166667
7	149245188	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.363636
7	149245190	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.2
7	149245205	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.153846
7	149245231	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.266667
7	149245253	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.363636
7	149245257	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.363636
7	149245272	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.363636
6	149334630	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.230769
6	149348121	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.2
6	149348191	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.266667
6	149348211	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.111111
6	149348268	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.136364
6	149348331	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0909091
6	149348708	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.08
6	149350179	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.2
6	149350193	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.181818
6	149350200	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.545455
5	149475076	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
5	149500404	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.104167
5	149500442	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.0571429
5	149500671	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.105263
6	149583356	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.176471
6	149600526	A->G	+	ENSG00000186625	KATNA1	protein_coding	Intergenic	.	.	Alu	0.133333
6	149600534	A->G	+	ENSG00000186625	KATNA1	protein_coding	Intergenic	.	.	Alu	0.5
6	149600535	A->G	+	ENSG00000186625	KATNA1	protein_coding	Intergenic	.	.	Alu	0.181818
6	149600558	A->G	+	ENSG00000186625	KATNA1	protein_coding	Intergenic	.	.	Alu	0.153846
6	149713757	A->G	-	ENSG00000131023	LATS1	protein_coding	Intergenic	.	.	Alu	0.142857
6	149714074	A->G	-	ENSG00000131023	LATS1	protein_coding	Intergenic	.	.	Alu	0.1
6	149729265	A->G	-	ENSG00000120253	NUP43	protein_coding	Intergenic	.	.	Alu	0.3
4	150288587	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.181818
4	150295376	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.3
4	150295379	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.4
4	150295396	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.8
4	150295416	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.384615
4	150295469	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.666667
4	150295470	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.75
4	150295472	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.666667
1	150340778	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.2
1	150340885	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.272727
1	150340941	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.117647
1	150340946	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.111111
5	150365191	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.454545
5	150365195	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.181818
5	150365201	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.2
1	150378728	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.7
1	150378773	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.235294
1	150379036	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.214286
1	150379054	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.133333
1	150393237	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.142857
1	150393327	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.117647
4	150398765	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.416667
1	150570981	A->G	-	ENSG00000203804	ADAMTSL4-AS1	processed_transcript	Intergenic	.	.	Alu	0.107143
1	150572418	A->G	-	ENSG00000203804	ADAMTSL4-AS1	processed_transcript	Intergenic	.	.	Alu	0.181818
3	150586121	A->G	+	ENSG00000120742	SERP1	protein_coding	Intergenic	.	.	Alu	0.142857
3	150586656	A->G	+	ENSG00000120742	SERP1	protein_coding	Intergenic	.	.	Alu	0.117647
1	150602562	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.15
1	150605777	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.181818
1	150614905	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.157895
3	150619276	A->G	+	ENSG00000198843	SELENOT	protein_coding	Intergenic	.	.	Alu	0.2
3	150619382	A->G	+	ENSG00000198843	SELENOT	protein_coding	Intergenic	.	.	Alu	0.3
4	150691041	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
5	150713498	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.166667
5	150713506	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0909091
5	150713546	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.24
5	150713608	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.3125
5	150713612	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.117647
5	150714031	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.181818
5	150714079	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.615385
5	150728908	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0789474
5	150728940	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0689655
5	150728943	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0645161
5	150728970	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0909091
5	150729016	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.09375
5	150729137	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.111111
4	150738076	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.275
4	150738080	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0731707
4	150738083	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.181818
4	150738102	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.15
4	150738135	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.304348
4	150738155	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0909091
4	150738168	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.136364
4	150738170	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.363636
4	150738173	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.428571
4	150738223	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.214286
4	150738228	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.1875
4	150738241	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.25
4	150742274	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
4	150742347	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.384615
4	150742356	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.25
4	150746613	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.111111
4	150746690	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.272727
4	150746715	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.272727
3	150755446	A->G	-	ENSG00000181788	SIAH2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	150756153	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.133333
4	150759037	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
4	150788164	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.15
4	150788170	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.08
4	150788201	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0769231
4	150788211	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.181818
4	150832353	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.5
4	150841715	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0566038
4	150841809	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0410959
4	150841852	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0289855
4	150841853	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.147059
4	150841859	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.285714
4	150841861	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.285714
4	150864743	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.3
4	150865880	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
4	150865895	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.153846
4	150865898	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.3
4	150865909	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.3
1	150930998	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	1
1	150931054	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.454545
1	150931179	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.4
1	150931180	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	150931189	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.2
1	150931322	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	150957942	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	150957952	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.789474
1	150958004	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.35
1	150958021	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.176471
1	150958038	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.142857
1	150958064	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.227273
1	150958069	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	150958074	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	150958077	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	150958103	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.695652
1	150958104	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.25
1	150958117	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	150958131	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.125
1	150958281	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	150958384	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	150958390	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.4
1	150958416	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	150958525	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.1875
4	150968101	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.1875
4	150968110	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.111111
1	150993382	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.5
1	150993446	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.166667
1	150993479	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.153846
1	150993486	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.2
1	150993526	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.117647
1	150993552	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.133333
1	150993556	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.142857
4	151110630	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0909091
4	151110685	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.142857
4	151110700	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0571429
4	151110730	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0588235
4	151110739	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0930233
4	151110795	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.261905
4	151110798	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0454545
4	151110851	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.137931
4	151115714	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.136364
4	151115804	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0810811
4	151115805	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.108108
4	151115838	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0689655
3	151120114	A->G	+	ENSG00000144893	MED12L	protein_coding	Intergenic	.	.	Alu	0.0869565
4	151120169	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.075
4	151120198	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0588235
4	151126144	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0909091
4	151126187	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.117647
4	151126592	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.117647
4	151127118	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.2
4	151130862	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.157895
4	151130890	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0909091
4	151130928	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0869565
3	151385581	A->G	+	ENSG00000144893	MED12L	protein_coding	Intergenic	.	.	Alu	0.181818
6	151394004	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
6	151394008	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
6	151397956	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
2	151420461	A->G	+	ENSG00000080345	RIF1	protein_coding	Intergenic	.	.	Alu	0.5
2	151420465	A->G	+	ENSG00000080345	RIF1	protein_coding	Intergenic	.	.	Alu	0.307692
2	151420483	A->G	+	ENSG00000080345	RIF1	protein_coding	Intergenic	.	.	Alu	0.133333
2	151420586	A->G	+	ENSG00000080345	RIF1	protein_coding	Intergenic	.	.	Alu	0.2
2	151420587	A->G	+	ENSG00000080345	RIF1	protein_coding	Intergenic	.	.	Alu	0.2
1	151434993	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.1875
1	151435038	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.266667
1	151435100	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.5
1	151436094	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151436504	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.357143
1	151436509	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.142857
1	151436516	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.277778
1	151436555	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.142857
1	151436581	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151447519	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.181818
1	151447549	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.272727
1	151447575	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.294118
1	151447736	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151447765	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.4
1	151449820	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.166667
1	151449833	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.230769
1	151450062	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.133333
1	151450065	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.25
1	151450067	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.125
1	151450128	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.0769231
1	151450134	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.217391
1	151450137	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.15
1	151450170	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.227273
1	151450210	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.142857
1	151450236	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.125
1	151450278	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.181818
1	151450282	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.166667
1	151450312	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.130435
1	151456015	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.133333
1	151456016	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.133333
1	151456024	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
7	151496912	A->G	-	ENSG00000106615	RHEB	protein_coding	Intergenic	.	.	Alu	0.166667
5	151793732	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.105263
5	151793893	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.684211
5	151793907	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.346154
5	151793934	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.681818
7	152158601	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.107143
7	152241338	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0952381
3	152275588	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0243902
7	152309392	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.2
7	152309696	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0833333
7	152309697	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152309698	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0833333
7	152309699	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152309700	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0869565
7	152309722	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0833333
7	152309800	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.1875
3	152329506	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0490196
3	152329528	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0409836
3	152329542	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0583333
3	152329578	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0350877
7	152391380	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.235294
7	152391386	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.117647
7	152391390	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.133333
7	152391406	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.294118
7	152391411	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.117647
7	152391412	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152391418	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.1875
7	152391419	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152391420	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152391438	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.4
7	152401273	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.6
7	152404948	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.285714
7	152404975	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152405039	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.25
7	152405049	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152405347	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.2
7	152405382	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152405383	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152405409	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.277778
7	152405412	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.105263
7	152405438	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0869565
7	152405512	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.190476
7	152405517	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.217391
7	152405518	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.130435
7	152406746	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
7	152414879	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0833333
7	152414888	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0689655
7	152414921	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.08
7	152426316	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.06
7	152426353	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0357143
7	152426436	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.246575
7	152426457	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.196721
7	152426469	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0327869
7	152427081	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152427235	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
4	152521931	A->G	-	ENSG00000109670	FBXW7	protein_coding	Intergenic	.	.	Alu	0.107143
2	152742386	A->G	+	ENSG00000177917	ARL6IP6	protein_coding	Intergenic	.	.	Alu	0.2
4	153490914	A->G	+	ENSG00000121210	TMEM131L	protein_coding	Intergenic	.	.	Alu	0.133333
4	153493267	A->G	+	ENSG00000121210	TMEM131L	protein_coding	Intergenic	.	.	Alu	0.153846
4	153510806	A->G	+	ENSG00000121210	TMEM131L	protein_coding	Intergenic	.	.	Alu	0.2
1	153860048	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
X	154066072	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.2
X	154066362	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.111111
X	154066389	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.125
X	154069011	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.166667
X	154081112	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.1875
X	154081306	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.105263
X	154081309	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.2
X	154081382	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.2
X	154087663	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.125
X	154087668	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.125
X	154087703	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.0740741
X	154087709	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.0740741
X	154087731	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.166667
X	154090276	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.2
6	154738064	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.571429
6	154738074	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.117647
6	154738094	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.166667
5	154764454	A->G	+	ENSG00000155506	LARP1	protein_coding	Intergenic	.	.	Alu	0.25
5	154764455	A->G	+	ENSG00000155506	LARP1	protein_coding	Intergenic	.	.	Alu	0.3
6	154793560	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.133333
6	154793664	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.111111
6	154793665	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.277778
6	154793668	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.166667
6	154793681	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.4
6	154793695	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.210526
5	154866793	A->G	+	ENSG00000155508	CNOT8	protein_coding	Intergenic	.	.	Alu	0.8
3	155093700	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.153846
3	155093717	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.111111
3	155093735	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.8125
3	155093736	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.529412
3	155093741	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.117647
3	155098398	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.2
3	155098409	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.25
3	155098435	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.384615
3	155098445	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.363636
3	155098462	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.214286
3	155098471	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.2
3	155098498	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.357143
3	155098513	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.611111
3	155107328	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.4
3	155107335	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.181818
1	155452760	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.9
1	155452761	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.7
1	155473635	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.142857
1	155527629	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155527639	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.25
1	155527796	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.117647
1	155538469	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155538552	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155553882	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.117647
1	155553951	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.1
1	155553970	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155554037	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.111111
1	155554195	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.153846
1	155558807	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.153846
1	155558821	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.125
1	155558823	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.125
1	155558933	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.227273
1	155558956	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155558983	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155559008	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.272727
1	155559026	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.416667
1	155559037	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.3
1	155559047	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.142857
1	155681099	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.2
1	155681505	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0769231
1	155681529	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.133333
1	155681537	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.909091
1	155681903	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0833333
1	155681904	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.1
1	155681912	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0508475
1	155681928	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0357143
1	155681957	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.109091
1	155681958	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0363636
1	155684633	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.296296
1	155684636	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.178571
1	155684653	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.157895
1	155684701	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.08
1	155684714	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.5
1	155684724	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.285714
1	155684757	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.222222
1	155684779	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.1875
1	155684780	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.1875
1	155684787	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.136364
1	155684813	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.315789
1	155684858	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.25
3	155851309	A->G	-	ENSG00000284952	AC104472.3	protein_coding	Intergenic	.	.	Alu	0.3
3	155851312	A->G	-	ENSG00000284952	AC104472.3	protein_coding	Intergenic	.	.	Alu	0.5
3	155851316	A->G	-	ENSG00000284952	AC104472.3	protein_coding	Intergenic	.	.	Alu	0.5
1	155922235	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.142857
1	155922244	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.347826
1	155922274	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0645161
1	155922278	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.137931
1	155922284	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.12
1	155922294	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.15
1	155922316	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.111111
1	155922328	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.307692
1	155922350	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.107143
1	155922351	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.178571
1	155922382	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.1875
1	155922387	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.375
1	155922417	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.388889
1	155922418	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.222222
1	155922947	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.272727
1	155922949	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.3
1	155924189	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.727273
1	155924195	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	1
1	155924198	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.25
1	155924205	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.909091
1	155924338	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.1
1	155924347	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.116279
1	155924357	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	1
1	155924373	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.151515
1	155924377	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0666667
1	155924413	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.714286
1	155924418	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.34375
1	155937116	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
1	155937122	A->G	-	.	.	.	Intergenic	.	.	Alu	0.190476
1	155937469	A->G	-	.	.	.	Intergenic	.	.	Alu	0.7
1	155937473	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
1	155937495	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
1	155937496	A->G	-	.	.	.	Intergenic	.	.	Alu	0.266667
1	155937552	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
1	155937607	A->G	-	.	.	.	Intergenic	.	.	Alu	0.611111
4	155937685	A->G	-	ENSG00000256043	CTSO	protein_coding	Intergenic	.	.	Alu	0.272727
4	155937707	A->G	-	ENSG00000256043	CTSO	protein_coding	Intergenic	.	.	Alu	0.4
1	155937745	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
4	155937793	A->G	-	ENSG00000256043	CTSO	protein_coding	Intergenic	.	.	Alu	0.142857
1	155937815	A->G	-	.	.	.	Intergenic	.	.	Alu	0.545455
1	155937845	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
1	155937884	A->G	-	.	.	.	Intergenic	.	.	Alu	0.692308
1	155937885	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
1	155938908	A->G	-	.	.	.	Intergenic	.	.	Alu	0.15
1	155939088	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
1	155939095	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
1	155939316	A->G	-	.	.	.	Intergenic	.	.	Alu	0.212121
1	155939503	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
1	155939511	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
1	155939523	A->G	-	.	.	.	Intergenic	.	.	Alu	0.266667
1	155939533	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
1	155939538	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
1	155939550	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
1	155939625	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
1	155939886	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
1	155939890	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
1	155939952	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
1	155939953	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
1	155939956	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	155939992	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
1	155940046	A->G	-	.	.	.	Intergenic	.	.	Alu	1
1	155940047	A->G	-	.	.	.	Intergenic	.	.	Alu	1
6	155943157	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	155943166	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	156129640	A->G	-	.	.	.	Intergenic	.	.	Alu	0.210526
6	156129644	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
6	156129667	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
6	156129691	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
6	156129769	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0571429
6	156140734	A->G	-	.	.	.	Intergenic	.	.	Alu	0.05
6	156177120	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0588235
6	156177143	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0465116
6	156195858	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
6	156195861	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
6	156195875	A->G	-	.	.	.	Intergenic	.	.	Alu	0.35
6	156195954	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	156231275	A->G	+	ENSG00000260238	PMF1-BGLAP	protein_coding	Intergenic	.	.	Alu	0.142857
1	156231289	A->G	+	ENSG00000260238	PMF1-BGLAP	protein_coding	Intergenic	.	.	Alu	0.214286
1	156231303	A->G	+	ENSG00000260238	PMF1-BGLAP	protein_coding	Intergenic	.	.	Alu	0.285714
1	156472911	A->G	-	ENSG00000116604	MEF2D	protein_coding	Intergenic	.	.	Alu	0.307692
1	156472998	A->G	-	ENSG00000116604	MEF2D	protein_coding	Intergenic	.	.	Alu	0.363636
6	156835119	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.125
6	156946124	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.117647
6	156946132	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.2
6	156946257	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.148936
6	157054103	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.363636
6	157054120	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.25
6	157114262	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.416667
6	157114339	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.142857
6	157114346	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.454545
6	157114347	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.545455
6	157127402	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.133333
2	157332153	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
5	157386773	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.192308
5	157386800	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.0952381
5	157386813	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.538462
6	157826445	A->G	+	ENSG00000130340	SNX9	protein_coding	Intergenic	.	.	Alu	0.0909091
5	157830221	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.166667
5	157830659	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.153846
5	157830691	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.166667
5	157830703	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.3
5	157830968	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.142857
5	157830982	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.166667
5	157831285	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.454545
5	157831728	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	157831761	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.125
5	157831791	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.176471
5	157831838	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.285714
5	157831848	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.157895
5	157831856	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.133333
5	157831874	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.111111
5	157831911	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.166667
5	157837782	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.138889
2	158643785	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.25
2	158643809	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.285714
2	158643827	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.5
2	158643865	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.181818
2	158643866	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.416667
2	158643895	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.611111
2	158643909	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.0952381
2	158643946	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.333333
2	158643949	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.636364
2	158643951	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	0.2
2	158644018	A->G	+	ENSG00000144283	PKP4	protein_coding	Intergenic	.	.	Alu	1
7	158789417	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.482759
7	158789449	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0740741
7	158789453	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0769231
7	158789454	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.178571
7	158789459	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.125
7	158789494	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.214286
7	158789495	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.214286
7	158789544	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.333333
7	158792298	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.153846
7	158792306	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.166667
7	158792791	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.166667
7	158792866	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.210526
7	158792880	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.263158
7	158792907	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.666667
7	158792989	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.516129
7	158793005	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0571429
7	158793024	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.114286
7	158793035	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.05
7	158793040	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.05
7	158793041	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0769231
6	158798793	A->G	-	ENSG00000092820	EZR	protein_coding	Intergenic	.	.	Alu	0.1
7	158800437	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.125
4	159121980	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.375
4	159121989	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.578947
6	159685381	A->G	-	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.153846
6	159734197	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.125
6	159734203	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.125
6	159734242	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.8
6	159734266	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.0454545
6	159734288	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.0888889
6	159734602	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.384615
2	159734888	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.137931
2	159734892	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.172414
1	160302687	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.107143
1	160302693	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.214286
1	160302757	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.266667
1	160302759	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	1
1	160302826	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.35
1	160302943	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.615385
1	160302981	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0625
1	160302988	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.735294
1	160302990	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.6
1	160302993	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0857143
1	160303025	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0740741
1	160303033	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.137931
1	160303051	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.111111
1	161033627	A->G	-	ENSG00000270149	AL591806.3	protein_coding	Intergenic	.	.	Alu	0.272727
6	163436667	A->G	+	ENSG00000112531	QKI	protein_coding	Intergenic	.	.	Alu	0.0645161
6	166977399	A->G	-	ENSG00000227598	Z94721.1	antisense	Intergenic	.	.	Alu	0.166667
6	166977410	A->G	-	ENSG00000227598	Z94721.1	antisense	Intergenic	.	.	Alu	0.416667
6	166981880	A->G	-	ENSG00000227598	Z94721.1	antisense	Intergenic	.	.	Alu	0.230769
6	166981890	A->G	-	ENSG00000227598	Z94721.1	antisense	Intergenic	.	.	Alu	0.25
6	167009271	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.222222
6	167009272	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.25
6	167009389	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.285714
6	167009416	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.352941
6	167009422	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.2
6	167009459	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.181818
6	167020722	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.142857
6	167020723	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.133333
6	167020794	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.0769231
6	167020891	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.2
2	168461405	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.230769
2	168728931	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.125
2	168735675	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.111111
2	168735694	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.285714
2	168735856	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.157895
4	168994675	A->G	-	ENSG00000145439	CBR4	protein_coding	Intergenic	.	.	Alu	0.1875
2	169589989	A->G	+	ENSG00000138398	PPIG	protein_coding	Intergenic	.	.	Alu	0.105263
2	169611153	A->G	+	ENSG00000138398	PPIG	protein_coding	Intergenic	.	.	Alu	0.153846
5	169891811	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.125
5	169929724	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.666667
3	169987339	A->G	+	ENSG00000008952	SEC62	protein_coding	Intergenic	.	.	Alu	0.3
3	169987369	A->G	+	ENSG00000008952	SEC62	protein_coding	Intergenic	.	.	Alu	0.272727
3	170146968	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.1
3	170152723	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.230769
3	170152799	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.181818
2	170946819	A->G	+	ENSG00000115806	GORASP2	protein_coding	Intergenic	.	.	Alu	0.117647
1	171492869	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.384615
1	171492932	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.133333
1	171492935	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.214286
1	171492985	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.384615
1	171493689	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.2
1	171493722	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.307692
1	171493732	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.454545
2	171739065	A->G	+	ENSG00000077380	DYNC1I2	protein_coding	Intergenic	.	.	Alu	0.181818
2	171766634	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
2	171935765	A->G	+	ENSG00000115840	SLC25A12	protein_coding	Intergenic	.	.	Alu	0.2
2	171935769	A->G	+	ENSG00000115840	SLC25A12	protein_coding	Intergenic	.	.	Alu	0.2
5	171952591	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
5	171952635	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.142857
5	171998553	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
5	171998579	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
3	172173613	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.142857
3	172179627	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.153846
3	172179644	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.333333
3	172179648	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.117647
3	172179696	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.25
3	172179736	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.235294
3	172179762	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.3
3	172179772	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.142857
3	172179833	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.230769
3	172179840	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.181818
3	172262786	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.0909091
3	172386595	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.214286
3	172386621	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.125
5	173081799	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.2
5	173081800	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.375
5	173081891	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.272727
5	173081892	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.166667
5	173082722	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.1
4	173209886	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.125
4	173210010	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.116279
4	173313496	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.181818
2	173927373	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.153846
2	173936269	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.142857
2	173936283	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.1875
2	173946800	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.0909091
2	173946918	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.125
2	173946978	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.0789474
2	173946982	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.0526316
1	173991173	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.3
1	174003166	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.181818
1	174003204	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.125
1	174003238	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.357143
1	174003239	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.333333
1	174003263	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.2
1	174003265	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.25
1	174003275	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.75
1	174003340	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.333333
1	174003703	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0625
1	174003715	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.192308
1	174003733	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0666667
1	174003737	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0666667
1	174003790	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.222222
1	174003800	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.44
1	174003826	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.15
1	174003856	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.2
1	174003933	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.142857
1	174003934	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.2
1	174003950	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.105263
1	174015502	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intergenic	.	.	Alu	0.2
1	174015503	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intergenic	.	.	Alu	0.5
1	174015741	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intergenic	.	.	Alu	0.4
1	174015747	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intergenic	.	.	Alu	0.272727
1	174015790	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intergenic	.	.	Alu	0.272727
1	174015794	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intergenic	.	.	Alu	0.272727
1	174016505	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0857143
1	174016518	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.375
1	174016539	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0952381
2	174218873	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.166667
2	174218923	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.166667
2	174218959	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.142857
2	174219068	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.181818
2	174219527	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.266667
2	174219584	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.5
2	174219592	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.16129
2	174219595	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.0571429
2	174219596	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.128205
2	174219597	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.0487805
2	174219625	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.0571429
2	174219631	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.0967742
2	174219648	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.375
2	174219649	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.1
2	174219668	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.1875
2	174219689	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.382353
2	174219695	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.09375
1	174832035	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.3
1	174832038	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.3
1	174832111	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.363636
1	174863418	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.6
2	175142221	A->G	-	ENSG00000115966	ATF2	protein_coding	Intergenic	.	.	Alu	0.0909091
1	175937866	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
1	175937908	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	175938243	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
1	175968005	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.230769
1	175968006	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.230769
1	176064716	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.375
1	176064730	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.133333
1	176070533	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	176070562	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176070579	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.3
1	176070706	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.6
1	176070730	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.7
1	176070786	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176070814	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.142857
1	176070815	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.466667
1	176070849	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.5
1	176141828	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.333333
5	176262536	A->G	+	ENSG00000170085	SIMC1	protein_coding	Intergenic	.	.	Alu	0.333333
5	176403102	A->G	-	ENSG00000175416	CLTB	protein_coding	Intergenic	.	.	Alu	0.2
5	176454457	A->G	+	ENSG00000113194	FAF2	protein_coding	Intergenic	.	.	Alu	0.0952381
5	176454458	A->G	+	ENSG00000113194	FAF2	protein_coding	Intergenic	.	.	Alu	0.0952381
5	176454493	A->G	+	ENSG00000113194	FAF2	protein_coding	Intergenic	.	.	Alu	0.12
5	177066844	A->G	+	ENSG00000113761	ZNF346	protein_coding	Intergenic	.	.	Alu	0.4
3	177101060	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.4
3	177188025	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.25
3	177188096	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.5
2	177227997	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.125
2	177228008	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.16
2	177228018	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.0540541
2	177228019	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.0769231
2	177246707	A->G	-	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.185185
2	177246732	A->G	-	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.0769231
2	177246737	A->G	-	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.0869565
5	178217290	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.666667
5	178217314	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.75
5	178217346	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.375
5	178217386	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.125
5	178217401	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.1875
5	178217404	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.133333
5	178217406	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.142857
5	178217412	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.416667
5	178217456	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.111111
5	178217679	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.214286
5	178217680	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.344828
5	178217681	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.5
5	178217695	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.0606061
5	178217737	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.0465116
5	178217738	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.372093
5	178217770	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.263158
2	178435149	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.25
2	178435236	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.5
3	179173377	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.333333
3	179173458	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.357143
3	179173464	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.0967742
3	179205085	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.181818
3	179445350	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.4
3	179445401	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.75
3	179445413	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.352941
3	179445479	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.111111
5	179829840	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.105263
5	179829841	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.111111
5	179829862	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.111111
5	179829871	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.1
5	179829914	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.0833333
5	179829983	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.294118
5	179829987	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.411765
5	179830029	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.176471
5	179830041	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.117647
5	179830051	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.315789
5	179999119	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.3
5	179999120	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.4
5	179999186	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.272727
5	179999189	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.25
5	179999190	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.25
5	180033041	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.333333
5	180033046	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.1875
5	180033102	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.2
5	180033106	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.1875
5	180033268	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.666667
5	180039347	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.133333
5	180039455	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.153846
1	180636931	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.263158
1	180636997	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.1
1	180637623	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.388889
1	180637631	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.111111
1	180637683	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.153846
1	180827225	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.210526
3	180917693	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.15
3	180917836	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.0571429
3	180917844	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	180921221	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.4
3	180921229	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.2
3	180921248	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.142857
3	180930779	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.133333
3	180930856	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.105263
3	180930870	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.2
3	180930887	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.105263
3	180930935	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.115385
3	180930949	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.545455
3	180942123	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.153846
3	180942124	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.625
3	180942132	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.125
3	180942257	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.272727
3	180942319	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.304348
3	182799910	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.2
3	182799911	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.5
3	182830236	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.2
3	182830278	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.157895
3	182841875	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.142857
3	182894860	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.25
3	182894871	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.272727
3	182894908	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.3
3	182906815	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.2
3	182906839	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.153846
3	182906910	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.222222
3	182906950	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.6
2	183140702	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.4
2	183140703	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.727273
2	183140729	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.25
2	183140734	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.153846
2	183140744	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.416667
2	183140773	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.230769
2	183140780	A->G	+	ENSG00000163002	NUP35	protein_coding	Intergenic	.	.	Alu	0.2
3	183637663	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.272727
3	183637728	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.157895
3	183639070	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.142857
3	183639090	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0833333
3	183639122	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0952381
3	183639905	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0526316
3	183641284	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.08
3	183641307	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.666667
3	183641317	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.142857
3	183641357	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.137931
3	183647018	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	1
3	183647073	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0930233
3	183647149	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.36
3	183647174	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0465116
3	183647229	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	1
3	183647230	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0555556
3	183647309	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.166667
3	183647749	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0833333
3	183647813	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.166667
3	183647993	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.166667
3	183656908	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.08
3	183668785	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0363636
3	183673098	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.135135
3	183673137	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.111111
3	183675675	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.104167
3	183675677	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0416667
3	183675678	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0444444
3	183675695	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.105263
3	183675730	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0277778
3	183731179	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.125
3	183764163	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.181818
3	183764224	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.153846
2	184695618	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	1
2	184695620	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.5625
2	184703448	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.923077
2	184703529	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.2
2	184704292	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.272727
2	184704298	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.363636
2	184704318	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	1
2	184704319	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.3
4	184781676	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.5
4	184781677	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.538462
4	184799389	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.466667
4	184799390	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.333333
1	184960757	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.125
1	184960767	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	1
1	184960769	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	1
1	184960833	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.133333
1	184961207	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.105263
1	184961264	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.307692
1	184961266	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.214286
1	184961267	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.285714
3	185620881	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.333333
3	185620884	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.428571
3	185674970	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.0487805
3	185707390	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.3
3	185707412	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.25
3	185757668	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.2
3	185788791	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	185788807	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.26087
3	185788914	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.2
3	185788950	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.4
3	185788968	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	185789023	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185789052	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.25
3	185789922	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185789928	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	185790006	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185790007	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185798969	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	185798999	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.5
3	185799276	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.833333
3	185799286	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	185799289	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	185799298	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.25
2	186181045	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
2	186181046	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
2	186181060	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4375
2	186645748	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.153846
2	186645751	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.166667
2	186645812	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.454545
2	186645825	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.357143
2	186645851	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.333333
2	190886687	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.153846
3	194650017	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.125
3	194650058	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.6
3	194650113	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.384615
3	194650115	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.166667
3	194650121	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.153846
3	194650191	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.7
3	194650192	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.7
3	195321285	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.125
3	195321308	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.214286
3	195321361	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.12
3	195377282	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.1
3	195377309	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.176471
3	195417027	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0740741
3	195417036	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0689655
3	195417050	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0625
3	195417109	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195417159	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	195417204	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.12
3	195417205	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.125
3	195437570	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	195437571	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.148148
3	195438216	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	195438223	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.285714
3	195438307	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.363636
3	195438698	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.25
3	195439300	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.285714
3	195439308	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0909091
3	195439344	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.185185
3	195439424	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.176471
3	195439452	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.2
3	195439723	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.133333
3	195439724	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	195527205	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.25
3	195527220	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.142857
3	195527232	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.5
3	195527278	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.133333
3	195527328	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.2
3	195527338	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.272727
3	195532123	A->G	-	ENSG00000184203	PPP1R2	protein_coding	Intergenic	.	.	Alu	0.0689655
3	195676149	A->G	+	ENSG00000215837	SDHAP2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.4
3	195676158	A->G	+	ENSG00000215837	SDHAP2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
3	195676185	A->G	+	ENSG00000215837	SDHAP2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
3	195703969	A->G	+	ENSG00000283426	SMBD1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.2
3	195890618	A->G	-	ENSG00000061938	TNK2	protein_coding	Intergenic	.	.	Alu	0.666667
3	195890685	A->G	-	ENSG00000061938	TNK2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195890703	A->G	-	ENSG00000061938	TNK2	protein_coding	Intergenic	.	.	Alu	0.133333
2	196161657	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.0909091
2	196161717	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.173913
2	196162715	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.16
2	196162782	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.0833333
3	196424066	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.1
3	196424137	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.0909091
3	196424449	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.272727
3	196424487	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.117647
3	196424521	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.142857
3	196424546	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.153846
3	196484296	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.125
3	196484310	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.0833333
3	196484557	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.117647
3	196484566	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.117647
3	196484584	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.266667
3	196642949	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.153846
3	196642950	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.107143
3	196647768	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.125
3	196648503	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0967742
3	196648552	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.178571
3	196648565	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.233333
3	196648566	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.103448
3	196648582	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0952381
3	196648583	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.105263
3	196648590	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.2
3	196648596	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.153846
3	196648602	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.166667
3	196648623	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.181818
3	196655962	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0810811
3	196657627	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0322581
3	196869304	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.4
3	196869343	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.166667
3	196869680	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.25
3	196869681	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.25
3	196906099	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.181818
3	196906109	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.5
3	196907224	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.105263
3	196907286	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.25
3	196907294	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.142857
3	196907301	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.153846
3	196907327	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.111111
3	196907353	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.111111
3	196908195	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.166667
3	196911632	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.263158
3	196911641	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.142857
3	196911689	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.157895
3	196911690	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.35
3	196911742	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.153846
2	197258238	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.047619
2	197286403	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0666667
2	197286507	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0555556
2	197286513	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.117647
2	197286577	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.189189
2	197289999	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0869565
2	197290005	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.125
2	197290078	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.117647
2	197300901	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0638298
2	197431214	A->G	-	ENSG00000115524	SF3B1	protein_coding	Intergenic	.	.	Alu	0.333333
2	197431215	A->G	-	ENSG00000115524	SF3B1	protein_coding	Intergenic	.	.	Alu	0.125
2	197463210	A->G	+	ENSG00000115520	COQ10B	protein_coding	Intergenic	.	.	Alu	0.142857
2	197463352	A->G	+	ENSG00000115520	COQ10B	protein_coding	Intergenic	.	.	Alu	0.08
2	197468322	A->G	+	ENSG00000115520	COQ10B	protein_coding	Intergenic	.	.	Alu	0.133333
2	197525555	A->G	+	ENSG00000270757	HSPE1-MOB4	protein_coding	Intergenic	.	.	Alu	0.25
2	197548965	A->G	+	ENSG00000270757	HSPE1-MOB4	protein_coding	Intergenic	.	.	Alu	0.181818
1	198173278	A->G	+	ENSG00000151414	NEK7	protein_coding	Intergenic	.	.	Alu	0.181818
1	198173298	A->G	+	ENSG00000151414	NEK7	protein_coding	Intergenic	.	.	Alu	0.230769
1	198877889	A->G	-	ENSG00000229989	MIR181A1HG	lincRNA	Intergenic	.	.	Alu	0.105263
2	200737970	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.857143
2	200737985	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.181818
2	200738069	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.2
2	200738075	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.272727
2	200738118	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.157895
2	200738119	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.1
2	200738139	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.105263
2	200738147	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.15
2	200738173	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.235294
2	200738174	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.444444
2	200738200	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.578947
2	200738239	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.125
2	200738243	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.24
2	200738244	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.208333
2	200738273	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.0740741
2	200738336	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.142857
2	200738375	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.1875
2	200739090	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
2	200739100	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0833333
2	200739154	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.192308
2	200739155	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.259259
2	200739195	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.12
2	200739200	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.172414
2	200915153	A->G	-	ENSG00000115942	ORC2	protein_coding	Intergenic	.	.	Alu	0.0952381
2	200947790	A->G	-	ENSG00000115942	ORC2	protein_coding	Intergenic	.	.	Alu	0.2
2	200964102	A->G	+	ENSG00000183308	AC005037.1	antisense	Intergenic	.	.	Alu	0.181818
2	200966516	A->G	+	ENSG00000183308	AC005037.1	antisense	Intergenic	.	.	Alu	0.5
2	200966618	A->G	+	ENSG00000183308	AC005037.1	antisense	Intergenic	.	.	Alu	0.166667
2	200966626	A->G	+	ENSG00000183308	AC005037.1	antisense	Intergenic	.	.	Alu	0.166667
2	201133752	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.166667
2	201133810	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.296296
2	201142048	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.181818
2	201713261	A->G	-	ENSG00000003393	ALS2	protein_coding	Intergenic	.	.	Alu	0.166667
1	201959880	A->G	+	ENSG00000134375	TIMM17A	protein_coding	Intergenic	.	.	Alu	0.25
1	202139316	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.12
1	202139330	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.181818
1	202139718	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.166667
1	202139776	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.230769
1	202139826	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.272727
1	202139923	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.142857
2	202223354	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.384615
2	202226897	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.0540541
2	202227018	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.65625
2	202227030	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.346154
2	202227031	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.285714
2	202227071	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.111111
2	202227083	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.517241
2	202227096	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.103448
2	202227333	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.09375
2	202227345	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.225806
2	202227346	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.0625
2	202227401	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.0714286
2	202227411	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.571429
2	202227412	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.230769
2	202286276	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.277778
2	202286487	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.142857
2	202288213	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.3
2	202288337	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.142857
2	202288364	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.166667
2	202288399	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.125
2	202288652	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.0869565
2	202288661	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.0869565
2	202288684	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.3125
2	202288695	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.142857
2	202294847	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.166667
2	202741662	A->G	+	ENSG00000138439	FAM117B	protein_coding	Intergenic	.	.	Alu	0.166667
2	202741673	A->G	+	ENSG00000138439	FAM117B	protein_coding	Intergenic	.	.	Alu	1
1	202753808	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.117647
1	202768911	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.142857
1	202768912	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.142857
1	202769175	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.294118
1	202769233	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.272727
1	202769522	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.454545
1	202769557	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.846154
1	202769586	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.25
2	202795922	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.2
2	202795923	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.2
2	202803134	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.333333
2	202803158	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.181818
2	202803183	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.454545
2	202803254	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.538462
2	202803281	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.2
2	202803286	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.105263
2	202803621	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.25
2	202803653	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.3
1	202903490	A->G	-	ENSG00000117153	KLHL12	protein_coding	Intergenic	.	.	Alu	0.181818
2	203298502	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.142857
2	203298581	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.133333
2	203298650	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.153846
2	203298658	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.333333
2	203298766	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.285714
2	203298797	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.307692
2	203298858	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.153846
2	203300769	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.2
2	203300795	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.3
2	203300879	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.153846
2	203303440	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.3
2	203303509	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.105263
2	203303510	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.4
2	203303584	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	1
2	203303729	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.105263
2	203303755	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.214286
2	203303756	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.214286
2	203303822	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.166667
2	203303956	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.285714
2	203303958	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.214286
2	203303964	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.214286
2	203303965	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.142857
2	203304098	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.2
2	203304099	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.8
1	204520022	A->G	+	ENSG00000198625	MDM4	protein_coding	Intergenic	.	.	Alu	0.111111
1	204520023	A->G	+	ENSG00000198625	MDM4	protein_coding	Intergenic	.	.	Alu	0.157895
1	204527210	A->G	+	ENSG00000198625	MDM4	protein_coding	Intergenic	.	.	Alu	0.176471
1	205736225	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.3
1	205736233	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.2
1	205739770	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.111111
1	205739831	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.1
1	205740088	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0967742
1	205740099	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.193548
1	205740108	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.107143
1	205740114	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.291667
1	205740140	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.25
1	205740141	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.148148
1	205740167	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.153846
1	205740277	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.2
1	205740280	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.266667
1	205740362	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.142857
1	205740401	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.3
1	205744695	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.1
1	205744725	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.333333
1	205744729	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.4
1	205744744	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.2
1	205744770	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.210526
1	205744793	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.117647
1	205744869	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.16
1	205744927	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.125
1	205745389	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.133333
1	205745394	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.230769
1	205745407	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.153846
1	205746037	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0689655
1	205746066	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0571429
1	205746074	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	205746079	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.25
1	205746104	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.103448
1	205746124	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.4
1	205746130	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.105263
1	205746139	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.136364
1	205746152	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.272727
1	205746156	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.133333
1	205746212	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.25
1	205746213	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.153846
1	205746232	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.16
1	205746233	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.148148
1	205746248	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.103448
1	205746294	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.470588
1	205746299	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.318182
2	206068828	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0952381
2	206068832	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.1
2	206068909	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.138889
2	206068920	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.107143
2	206070103	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.3
2	206070109	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.25
2	206070154	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.133333
2	206070211	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.111111
2	206070235	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.294118
2	206070236	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.125
2	206070296	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.166667
2	206070308	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0952381
2	206070311	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.153846
2	206070312	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.235294
2	206070664	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.181818
2	206071054	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.142857
2	206071055	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0769231
2	206071087	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0714286
2	206071103	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.12
2	206071191	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.117647
2	206793142	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
2	207540440	A->G	+	ENSG00000118260	CREB1	protein_coding	Intergenic	.	.	Alu	0.2
2	207540524	A->G	+	ENSG00000118260	CREB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	211349165	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intergenic	.	.	Alu	0.181818
1	211825297	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.133333
1	211825312	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.428571
1	212054574	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.153846
1	212054584	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.117647
1	212054648	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.105263
1	212054697	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.111111
1	212054715	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.125
1	212054716	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.111111
1	212054744	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.166667
1	212340052	A->G	+	ENSG00000066027	PPP2R5A	protein_coding	Intergenic	.	.	Alu	0.115385
1	212345128	A->G	+	ENSG00000066027	PPP2R5A	protein_coding	Intergenic	.	.	Alu	0.142857
1	213179304	A->G	+	ENSG00000136643	RPS6KC1	protein_coding	Intergenic	.	.	Alu	0.272727
1	213179372	A->G	+	ENSG00000136643	RPS6KC1	protein_coding	Intergenic	.	.	Alu	0.214286
2	216141939	A->G	+	ENSG00000079246	XRCC5	protein_coding	Intergenic	.	.	Alu	0.142857
2	216141957	A->G	+	ENSG00000079246	XRCC5	protein_coding	Intergenic	.	.	Alu	0.333333
2	218226361	A->G	+	ENSG00000163466	ARPC2	protein_coding	Intergenic	.	.	Alu	0.0952381
2	218526321	A->G	-	ENSG00000135913	USP37	protein_coding	Intergenic	.	.	Alu	0.2
2	222901851	A->G	+	ENSG00000123983	ACSL3	protein_coding	Intergenic	.	.	Alu	0.214286
1	224186606	A->G	+	ENSG00000143753	DEGS1	protein_coding	Intergenic	.	.	Alu	0.181818
1	224415585	A->G	-	ENSG00000162923	WDR26	protein_coding	Intergenic	.	.	Alu	0.0740741
1	224415589	A->G	-	ENSG00000162923	WDR26	protein_coding	Intergenic	.	.	Alu	0.0666667
2	224516351	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.0571429
2	224516414	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.125
2	224516415	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.0769231
2	224516449	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.148148
2	224516455	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.230769
2	224516465	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.166667
2	224516481	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.210526
2	224516557	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.12
2	224516566	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.318182
2	224791500	A->G	-	ENSG00000135905	DOCK10	protein_coding	Intergenic	.	.	Alu	0.105263
2	224791585	A->G	-	ENSG00000135905	DOCK10	protein_coding	Intergenic	.	.	Alu	0.153846
2	224791605	A->G	-	ENSG00000135905	DOCK10	protein_coding	Intergenic	.	.	Alu	0.318182
1	225869927	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.8
1	225869933	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.4
1	225870093	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.230769
1	225870105	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.545455
1	225870106	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.272727
1	226169376	A->G	-	ENSG00000182827	ACBD3	protein_coding	Intergenic	.	.	Alu	0.181818
1	226169903	A->G	-	ENSG00000182827	ACBD3	protein_coding	Intergenic	.	.	Alu	0.818182
1	226169913	A->G	-	ENSG00000182827	ACBD3	protein_coding	Intergenic	.	.	Alu	0.2
2	227503046	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.2
2	227503047	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.3
2	227539610	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.5
2	227539612	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.722222
2	227539684	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.4
2	227539691	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.166667
2	227539708	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.142857
2	227539720	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.153846
2	227539855	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.2
2	227539910	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.470588
2	227539915	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.625
2	229831457	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.133333
2	229831489	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.636364
2	229831545	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.416667
2	229831548	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.583333
2	229831569	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.272727
2	229884385	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.545455
2	229884456	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.25
2	230753551	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.545455
2	230753616	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.7
2	231451292	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
2	231451298	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
1	232030937	A->G	+	ENSG00000162946	DISC1	protein_coding	Intergenic	.	.	Alu	0.3
2	232726116	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.181818
2	232726249	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.105263
2	232726277	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.142857
2	232726278	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.153846
2	232726289	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.142857
2	233073519	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233073520	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233077538	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233077539	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.222222
2	233077579	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.235294
2	233077580	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.133333
2	233095659	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.454545
2	233136277	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233136279	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.333333
2	233136294	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.307692
2	233136352	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.384615
2	233136372	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.15
2	233136400	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.105263
2	233136439	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.214286
2	233137636	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233137653	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.230769
2	233137697	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0952381
2	233138088	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.181818
2	233138164	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.09375
2	233138166	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0967742
2	233138229	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.151515
2	233138230	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	1
2	233138235	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0833333
2	233138243	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0857143
2	233158848	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.363636
2	233158938	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.181818
2	233158949	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233159004	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233159483	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0298507
2	233159489	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.666667
2	233159538	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.226415
2	233159539	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0322581
2	233159540	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.28125
2	233159542	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.174603
2	233159543	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.133333
2	233159544	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.163636
2	233159545	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.14
2	233159547	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.5
2	233159563	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.222222
2	233159566	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0377358
2	233159573	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.265625
2	233159615	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.125
2	233159622	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.305085
2	233159628	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.314815
2	233159635	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.285714
2	233159643	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.68
2	233159651	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.08
2	233174521	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233174563	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.272727
2	233174688	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.115385
2	233175017	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233175028	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0689655
2	233175098	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233175107	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0952381
2	233175133	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.08
2	233175139	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0869565
2	233175163	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.12
2	233175812	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.3
2	233175904	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233205135	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0645161
2	233362431	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.153846
2	233362464	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.181818
2	233362465	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.2
2	233362486	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.181818
2	233362608	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.230769
2	233375193	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.25
2	233375212	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.181818
1	235145883	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.272727
1	235145888	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.111111
1	235236065	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.105263
1	235300916	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0857143
1	235300943	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0645161
1	235301132	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.473684
1	235301161	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.111111
1	235301282	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0681818
1	235301293	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.183673
1	235301294	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0408163
1	235301316	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0338983
1	235301320	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.169492
1	235301321	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0862069
1	235301335	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0769231
1	235301355	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0512821
1	235301358	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0465116
1	235301365	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.361111
1	235301370	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0833333
1	235301371	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0606061
1	235301372	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0909091
1	235301414	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.3
1	235301423	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.219512
1	235301430	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0408163
1	235301501	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0754717
1	235301503	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.773585
1	235301521	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.047619
1	235301670	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0888889
1	235301682	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0540541
1	235301714	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.2
1	235301777	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0606061
1	235301826	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.05
1	235303195	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.227273
1	235303196	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.217391
1	235307886	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0555556
1	235307941	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0740741
1	235307967	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0625
1	235307968	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.204082
1	235308338	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0869565
1	235308357	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.142857
1	235318219	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.533333
1	235318273	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.2
1	235318274	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.347826
1	235318285	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0625
1	235318291	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.1
1	235318297	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0666667
1	235318300	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.75
1	235318313	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0925926
1	235318314	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0754717
1	235318340	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.12
1	235318343	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0350877
1	235318377	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0454545
1	235318392	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.297872
1	235318393	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.125
1	235318701	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.111111
1	235318757	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.190476
1	235318759	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.318182
1	235318769	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.136364
1	235318772	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.45
1	235318773	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.772727
1	235323243	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0833333
1	236263897	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.166667
1	236264287	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.181818
1	236264288	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.181818
1	236264312	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.363636
1	236264381	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.3
1	236600238	A->G	-	ENSG00000119285	HEATR1	protein_coding	Intergenic	.	.	Alu	0.153846
1	236600265	A->G	-	ENSG00000119285	HEATR1	protein_coding	Intergenic	.	.	Alu	0.2
1	236797749	A->G	+	ENSG00000116984	MTR	protein_coding	Intergenic	.	.	Alu	0.142857
1	236797812	A->G	+	ENSG00000116984	MTR	protein_coding	Intergenic	.	.	Alu	0.166667
1	236797835	A->G	+	ENSG00000116984	MTR	protein_coding	Intergenic	.	.	Alu	0.157895
2	237707312	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.6
2	237707326	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.636364
2	237707339	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.181818
2	237707351	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.7
2	237707358	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.583333
2	237707429	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.129032
2	237707437	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.137931
2	238184620	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.0909091
2	238184626	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.0571429
2	238184693	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.0625
2	238184763	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.0952381
2	238184805	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.0869565
2	241326811	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0540541
2	241326833	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0416667
2	241326834	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0612245
2	241326839	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0408163
2	241326842	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0652174
2	241326923	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0625
2	241326927	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0689655
2	241326935	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.115385
2	241327849	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0952381
2	241327892	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.117647
2	241327932	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0769231
1	243242798	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.105263
1	243246343	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.214286
1	243246360	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.0740741
1	243246369	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.185185
1	243246450	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.142857
1	243267067	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.636364
1	243267116	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.466667
1	243267122	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.583333
1	243267128	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.416667
1	243267188	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.416667
1	243267192	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.333333
1	243267206	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.636364
1	243447105	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.2
1	243447115	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.266667
1	243447130	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.4375
1	243447131	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.4
1	243447201	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.6
1	243784899	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.181818
1	243797994	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.2
1	243798198	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.2
1	243798304	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.15
1	243798327	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.0909091
1	243798380	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.166667
1	243798441	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.230769
1	243798445	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.133333
1	243798486	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.0952381
1	243798507	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.166667
1	246185534	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.181818
1	246248738	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.0869565
1	246269634	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.181818
1	246269705	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.25
1	246269799	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.75
1	246269800	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.25
1	246288134	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.818182
1	246288139	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.5
1	246288198	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.615385
1	246288202	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.153846
1	246288211	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.166667
1	246288277	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.3
1	246288278	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.2
1	246288281	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.333333
1	246288292	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.2
1	246316275	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.272727
1	246316287	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.3
1	246543135	A->G	-	ENSG00000162851	TFB2M	protein_coding	Intergenic	.	.	Alu	0.2
1	246576007	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.166667
1	246576010	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.142857
1	246576073	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.125
1	246576075	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.117647
1	246868196	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.210526
1	246892418	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.0571429
1	246892514	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.0769231
1	246892770	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.166667
1	246892772	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.181818
1	246911621	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.111111
1	247072129	A->G	-	ENSG00000135747	ZNF670-ZNF695	protein_coding	Intergenic	.	.	Alu	0.214286
18	669440	A->G	-	ENSG00000176890	TYMS	protein_coding	Intron	.	.	Alu	0.117647
19	4450592	A->G	+	ENSG00000280239	AC011498.7	TEC	Intron	.	.	Alu	0.181818
19	4450644	A->G	+	ENSG00000280239	AC011498.7	TEC	Intron	.	.	Alu	0.25
19	4450665	A->G	+	ENSG00000280239	AC011498.7	TEC	Intron	.	.	Alu	0.0869565
3	9987139	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0512821
19	11040715	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intron	.	.	Alu	0.157895
19	11040797	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intron	.	.	Alu	0.181818
19	11040803	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intron	.	.	Alu	0.25
19	11449901	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.875
19	11449925	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.166667
19	11449948	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.642857
19	11449949	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.666667
19	11449962	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.153846
19	11850780	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.176471
19	11850810	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.0952381
19	11850815	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.105263
19	11850844	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.16
19	11850848	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.521739
19	11850884	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.263158
19	11850910	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.384615
19	11850924	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.166667
19	11850997	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.210526
19	12003412	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.0625
19	12003516	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.0714286
19	12003517	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.148148
10	12456593	A->G	+	ENSG00000252118	RNU6ATAC39P	snRNA	Intron	.	.	Alu	0.181818
10	12456614	A->G	+	ENSG00000252118	RNU6ATAC39P	snRNA	Intron	.	.	Alu	0.142857
19	12660912	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.142857
19	12660923	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.111111
19	12660938	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.125
19	12660977	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.266667
18	12862440	A->G	-	ENSG00000175354	PTPN2	protein_coding	Intron	.	.	Alu	0.333333
3	14944597	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.357143
3	14944603	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.285714
3	14944630	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.571429
19	15348342	A->G	+	ENSG00000273218	AC005776.2	lincRNA	Intron	.	.	Alu	0.2
9	15505203	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intron	.	.	Alu	0.181818
17	15530867	A->G	-	ENSG00000175106	TVP23C	protein_coding	Intron	.	.	Alu	0.307692
17	16024434	A->G	-	ENSG00000011295	TTC19	protein_coding	Intron	.	.	Alu	0.130435
17	16024473	A->G	-	ENSG00000011295	TTC19	protein_coding	Intron	.	.	Alu	0.125
17	16024584	A->G	-	ENSG00000011295	TTC19	protein_coding	Intron	.	.	Alu	0.08
19	16639979	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intron	.	.	Alu	0.153846
19	16640087	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intron	.	.	Alu	0.153846
8	17927609	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.117647
8	17927690	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.142857
14	20450149	A->G	-	ENSG00000092094	OSGEP	protein_coding	Intron	.	.	Alu	0.176471
19	21452101	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.210526
19	21452104	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.105263
19	21452160	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.157895
19	21452161	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.25
19	21452173	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.0833333
19	21452226	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.111111
19	21452247	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.08
16	22419361	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0952381
16	22419381	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.153846
16	22419387	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.117647
16	22419404	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0769231
16	22419421	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.1
16	22419431	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.130435
16	22419441	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.166667
16	22419470	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0833333
16	22419679	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0909091
15	24983593	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.181818
15	24983610	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.4
15	24983646	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.8
15	24983729	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.153846
22	26476388	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.153846
22	26476441	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.733333
22	26476479	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.130435
22	26476511	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.2
22	26476518	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.08
22	26476522	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.142857
22	26476543	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.0869565
22	26476544	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.25
22	26476547	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.56
6	28123147	A->G	-	ENSG00000269293	ZSCAN16-AS1	antisense	Intron	.	.	Alu	0.06
15	28190253	A->G	-	ENSG00000128731	HERC2	protein_coding	Intron	.	.	Alu	0.111111
15	28190291	A->G	-	ENSG00000128731	HERC2	protein_coding	Intron	.	.	Alu	0.272727
1	28509335	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.12426
1	28509422	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.0472103
1	28509425	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.110092
17	28721088	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intron	.	.	Alu	0.1875
17	28722419	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intron	.	.	Alu	0.0909091
17	28722429	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intron	.	.	Alu	0.333333
17	28722449	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intron	.	.	Alu	0.136364
1	29173235	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.225806
1	29173252	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.0869565
1	29173276	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.1875
1	29173302	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.153846
1	29173349	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.115385
16	31123721	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.642857
16	31123746	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.1875
16	31123773	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.166667
16	31123774	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.454545
16	31123786	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.214286
1	32781916	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.0769231
1	32781952	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.105263
1	32781978	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.642857
21	36339150	A->G	+	ENSG00000159256	MORC3	protein_coding	Intron	.	.	Alu	0.181818
21	36339184	A->G	+	ENSG00000159256	MORC3	protein_coding	Intron	.	.	Alu	0.25
21	36339189	A->G	+	ENSG00000159256	MORC3	protein_coding	Intron	.	.	Alu	0.75
19	38844801	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.0689655
19	38844809	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.111111
19	38844902	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.103448
19	38844917	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.589744
19	38845319	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.454545
19	38845324	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.4
5	38969801	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.4
5	38969807	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.4
5	38969842	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.0769231
5	38969862	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.190476
5	38969869	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.130435
19	39491548	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.363636
19	39491564	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.181818
19	39491616	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.142857
19	39491621	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.133333
19	39491636	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.235294
19	39491701	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.266667
19	39491716	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.157895
19	39491748	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.444444
19	39492751	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.3
15	41298676	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.117647
15	41298734	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0714286
15	41298764	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0857143
15	41298775	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.102564
15	41298780	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0882353
15	41298801	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0689655
15	41298807	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.107143
15	41298816	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.08
15	41298823	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.148148
15	41298836	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0833333
15	41299219	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.125
15	41299220	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.2
15	41299237	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.1
15	41299253	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.4
15	41299259	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0833333
15	41302238	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.121951
15	41302240	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0487805
15	41302285	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.142857
15	41302308	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0769231
15	41302310	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.08
15	41302454	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.235294
15	41305286	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.333333
15	41305287	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.333333
15	41305449	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.5625
15	41305459	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.133333
17	41984401	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.181818
17	42014305	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.1
17	42014654	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.0465116
17	42014703	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.185185
17	42014704	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.0769231
17	42014776	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.148148
17	42014838	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.0833333
12	42355604	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.08
12	42355612	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.0384615
10	42516150	A->G	-	ENSG00000234420	ZNF37BP	transcribed_processed_pseudogene	Intron	.	.	Alu	0.153846
10	42516179	A->G	-	ENSG00000234420	ZNF37BP	transcribed_processed_pseudogene	Intron	.	.	Alu	0.166667
8	43070107	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intron	.	.	Alu	0.142857
1	44626819	A->G	+	ENSG00000187147	RNF220	protein_coding	Intron	.	.	Alu	0.25
1	44626828	A->G	+	ENSG00000187147	RNF220	protein_coding	Intron	.	.	Alu	0.538462
1	44626836	A->G	+	ENSG00000187147	RNF220	protein_coding	Intron	.	.	Alu	0.214286
17	45218354	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.357143
17	45218399	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.428571
17	45218464	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.307692
17	45218503	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.411765
17	45218534	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.166667
17	45218536	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.5
17	45218634	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.25
17	45218639	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.181818
17	45218643	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.181818
13	45391602	A->G	+	ENSG00000170919	TPT1-AS1	processed_transcript	Intron	.	.	Alu	0.166667
1	45611605	A->G	-	ENSG00000132780	NASP	protein_coding	Intron	.	.	Alu	0.454545
19	46710383	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intron	.	.	Alu	0.181818
19	46710387	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intron	.	.	Alu	0.272727
19	46710407	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intron	.	.	Alu	0.2
17	47170270	A->G	-	ENSG00000004897	CDC27	protein_coding	Intron	.	.	Alu	0.4
11	47513991	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intron	.	.	Alu	0.357143
17	47596073	A->G	+	ENSG00000141279	NPEPPS	protein_coding	Intron	.	.	Alu	0.208333
19	49804156	A->G	+	ENSG00000196961	AP2A1	protein_coding	Intron	.	.	Alu	0.166667
14	49820192	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.384615
14	49820217	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.5
3	49962985	A->G	+	ENSG00000004534	RBM6	protein_coding	Intron	.	.	Alu	0.2
15	50357435	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50357447	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.214286
15	50357492	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.3
15	50357569	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50358040	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.206897
15	50358041	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.193548
15	50358108	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.178571
15	50358110	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.115385
15	50358118	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0869565
15	50358158	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.142857
15	50358184	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.5
15	50358225	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.08
15	50358246	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0952381
15	50358250	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.15
15	50358293	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.125
15	50360622	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.590909
15	50360623	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.956522
15	50360641	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.625
15	50360646	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.764706
15	50360651	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.230769
15	50360668	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50360681	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.6
15	50360686	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.416667
15	50360698	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.692308
15	50360708	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.666667
15	50360710	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.333333
15	50360724	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.269231
15	50360730	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.185185
15	50360752	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.448276
15	50360778	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.681818
15	50360783	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.545455
15	50360789	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.85
15	50360790	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.235294
15	50360804	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.241379
15	50360816	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	1
15	50360821	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.243902
15	50360830	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0789474
15	50360831	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.108108
15	50360843	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0392157
15	50360981	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0408163
15	50360992	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0377358
15	50360993	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.12963
15	50360995	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.111111
15	50361001	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0652174
15	50361002	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0454545
15	50361015	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	1
15	50361024	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.392857
15	50361028	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.153846
15	50361047	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0769231
15	50361055	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.5
15	50361056	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50361061	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0740741
15	50361073	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.15625
15	50361081	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.107143
15	50361092	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.269231
15	50361105	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.192308
15	50361120	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.72
15	50361126	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0952381
15	50361136	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.24
15	50361137	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.666667
15	50361146	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.176471
15	50361159	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.217391
15	50361163	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	1
15	50361177	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0869565
15	50361178	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.25
15	50361202	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0882353
15	50361206	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.314286
15	50361207	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.147059
15	50365729	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.3
15	50365730	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.7
15	50365779	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.4
15	50365787	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50365832	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.5
15	50365842	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.375
15	50365847	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.4375
15	50365879	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50366419	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.272727
15	50366427	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.538462
15	50366435	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.25
15	50366449	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50366457	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.266667
15	50366470	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.357143
15	50366475	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50366579	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.454545
15	50366581	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50366593	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.533333
15	50366596	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50366616	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.3
15	50366631	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.407407
15	50366647	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.291667
15	50366656	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50366663	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.375
15	50366761	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.266667
15	50366794	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.171429
15	50366807	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.117647
15	50366812	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.21875
15	50366822	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.666667
15	50366828	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0714286
15	50366836	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.225
15	50366842	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0465116
15	50366843	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0465116
15	50366855	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0714286
15	50366895	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.222222
15	50366897	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0571429
15	50366908	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.272727
15	50366921	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.217391
15	50366922	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.238095
15	50366930	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.210526
15	50366937	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.235294
15	50366940	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.421053
15	50366946	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.105263
15	50366962	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.96
15	50367004	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.21875
15	50367009	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0882353
15	50367238	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.657143
15	50367244	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0714286
15	50367252	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50367254	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0869565
15	50367257	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0833333
15	50367267	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.235294
15	50367281	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.133333
15	50367291	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.285714
15	50367301	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.933333
15	50367324	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.111111
15	50367325	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.111111
15	50367330	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.235294
15	50367383	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.153846
15	50367398	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.137931
15	50367426	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.106383
15	50367431	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0357143
15	50367442	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.145161
15	50368041	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.115385
15	50368047	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0740741
15	50368094	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.117647
15	50368096	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0606061
15	50368100	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0810811
15	50368110	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0606061
15	50368112	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0909091
15	50368114	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.413793
15	50368172	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.107143
15	50368174	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.133333
15	50368176	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0645161
15	50368182	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.16129
15	50368196	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50368210	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.097561
15	50368215	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0612245
15	50368239	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0338983
15	50368267	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.114286
15	50368309	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0555556
15	50368325	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0576923
15	50368336	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50368345	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0645161
15	50368358	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0606061
15	50368363	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0967742
15	50368368	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0645161
15	50368383	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.130435
15	50368393	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0689655
15	50368400	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.193548
15	50368401	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0967742
15	50368403	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.111111
15	50368432	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.148148
15	50368449	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50368452	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.5
15	50368458	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0869565
15	50368459	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.24
15	50368468	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50368485	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.157895
15	50368486	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.45
15	50368491	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.130435
15	50368534	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.107143
15	50368623	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.257143
15	50368624	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.243243
15	50368646	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0606061
15	50368674	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.15
15	50368675	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.105263
15	50368761	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50368782	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.583333
15	50368837	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.272727
15	50369508	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50369517	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50369578	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	1
15	50369581	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.214286
15	50369597	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50369616	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.142857
15	50369661	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.421053
15	50369666	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.117647
15	50369686	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.210526
15	50369692	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.105263
15	50369730	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.15
15	50369814	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.129032
15	50369828	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.212121
15	50369836	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0740741
15	50369852	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.181818
15	50369857	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.111111
15	50369876	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.133333
15	50369900	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50369940	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.157895
15	50369966	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.393939
15	50369967	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.228571
15	50369972	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.147059
15	50369981	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.212121
15	50370001	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0625
15	50370014	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.0740741
15	50370038	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.108108
13	50939105	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intron	.	.	Alu	0.105263
3	52414753	A->G	+	ENSG00000010318	PHF7	protein_coding	Intron	.	.	Alu	0.2
3	52414754	A->G	+	ENSG00000010318	PHF7	protein_coding	Intron	.	.	Alu	0.166667
14	52721545	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.111111
14	52721546	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.166667
14	52721822	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.230769
19	52723449	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intron	.	.	Alu	0.230769
19	52723523	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intron	.	.	Alu	0.2
19	52927245	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intron	.	.	Alu	0.272727
2	53870446	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0645161
2	53870465	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.105263
2	53870470	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0606061
2	53870471	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0588235
2	53870502	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0526316
2	53870635	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0571429
2	53870662	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.2
2	53870882	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.2
2	53870886	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.2
14	55285291	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intron	.	.	Alu	0.333333
14	55285295	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intron	.	.	Alu	0.230769
2	55332243	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intron	.	.	Alu	0.166667
4	55412140	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intron	.	.	Alu	0.15625
18	55551082	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.333333
18	55551108	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.153846
18	55551132	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.454545
18	55551137	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.166667
18	55551138	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.307692
18	55551148	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.153846
18	55551172	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.285714
18	55551201	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.230769
7	56073940	A->G	+	ENSG00000129103	SUMF2	protein_coding	Intron	.	.	Alu	0.142857
12	56312844	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intron	.	.	Alu	0.4
19	56379466	A->G	+	ENSG00000240225	ZNF542P	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.2
14	58258252	A->G	+	ENSG00000100567	PSMA3	protein_coding	Intron	.	.	Alu	0.5
14	58258333	A->G	+	ENSG00000100567	PSMA3	protein_coding	Intron	.	.	Alu	0.105263
14	58295747	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intron	.	.	Alu	0.181818
19	58582393	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.142857
19	58582577	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.166667
19	58584115	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.9
19	58584165	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.176471
19	58584206	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.363636
17	62004993	A->G	-	ENSG00000279133	AC018628.1	TEC	Intron	.	.	Alu	0.416667
17	62004996	A->G	-	ENSG00000279133	AC018628.1	TEC	Intron	.	.	Alu	0.272727
12	62482841	A->G	+	ENSG00000061987	MON2	protein_coding	Intron	.	.	Alu	0.181818
12	62482850	A->G	+	ENSG00000061987	MON2	protein_coding	Intron	.	.	Alu	0.2
17	64782811	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.75
17	64783157	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.6
17	64783222	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.272727
11	65441347	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.217391
11	65441403	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0869565
11	65441418	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.222222
11	65441426	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.1
11	65441427	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.142857
11	65441439	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0909091
15	65753911	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intron	.	.	Alu	0.136364
11	66271548	A->G	+	ENSG00000174903	RAB1B	protein_coding	Intron	.	.	Alu	0.142857
17	67355342	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.0338983
17	67355343	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.0862069
17	67355365	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.0666667
17	67355371	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.2
17	67956443	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.545455
17	67956570	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.3
17	67956592	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.3
17	67956857	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.166667
16	70035686	A->G	-	ENSG00000255185	PDXDC2P	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.636364
2	73457954	A->G	+	ENSG00000230002	ALMS1-IT1	sense_intronic	Intron	.	.	Alu	0.105263
2	73458009	A->G	+	ENSG00000230002	ALMS1-IT1	sense_intronic	Intron	.	.	Alu	0.6
10	73778867	A->G	+	ENSG00000196968	FUT11	protein_coding	Intron	.	.	Alu	0.2
X	73947010	A->G	+	ENSG00000225470	JPX	lincRNA	Intron	.	.	Alu	0.08
X	73947054	A->G	+	ENSG00000225470	JPX	lincRNA	Intron	.	.	Alu	0.111111
X	73947127	A->G	+	ENSG00000225470	JPX	lincRNA	Intron	.	.	Alu	0.125
X	74278391	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.7
X	74278476	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.3
X	74278485	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.333333
X	74278491	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.833333
16	74915532	A->G	-	ENSG00000103091	WDR59	protein_coding	Intron	.	.	Alu	0.363636
16	75394807	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.380952
16	75394827	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.125
16	75394837	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.142857
16	75394857	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.166667
16	75394860	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.294118
11	76441475	A->G	-	ENSG00000255135	AP002360.1	lincRNA	Intron	.	.	Alu	0.0454545
11	76441484	A->G	-	ENSG00000255135	AP002360.1	lincRNA	Intron	.	.	Alu	0.0652174
11	76441485	A->G	-	ENSG00000255135	AP002360.1	lincRNA	Intron	.	.	Alu	0.0930233
11	76441592	A->G	-	ENSG00000255135	AP002360.1	lincRNA	Intron	.	.	Alu	0.0833333
11	76441618	A->G	-	ENSG00000255135	AP002360.1	lincRNA	Intron	.	.	Alu	0.0833333
11	77762141	A->G	-	ENSG00000048649	RSF1	protein_coding	Intron	.	.	Alu	0.176471
11	77762158	A->G	-	ENSG00000048649	RSF1	protein_coding	Intron	.	.	Alu	0.157895
1	93337871	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0434783
1	93337903	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0517241
1	93337965	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.08
1	93337969	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0666667
1	93337973	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0263158
1	93337979	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.28
1	93337985	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0405405
1	93337997	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0689655
1	93338054	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.166667
1	93338065	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0952381
1	93338073	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0540541
1	93338078	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.05
14	94053259	A->G	-	ENSG00000089737	DDX24	protein_coding	Intron	.	.	Alu	0.172414
14	94053289	A->G	-	ENSG00000089737	DDX24	protein_coding	Intron	.	.	Alu	0.121212
14	94053348	A->G	-	ENSG00000089737	DDX24	protein_coding	Intron	.	.	Alu	0.238095
14	94053355	A->G	-	ENSG00000089737	DDX24	protein_coding	Intron	.	.	Alu	0.133333
8	94497303	A->G	-	ENSG00000164944	VIRMA	protein_coding	Intron	.	.	Alu	0.2
12	95483349	A->G	+	ENSG00000111142	METAP2	protein_coding	Intron	.	.	Alu	0.0392157
2	96281368	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intron	.	.	Alu	0.166667
8	98043194	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0882353
8	98043199	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.09375
8	98043209	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.605263
8	98043224	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.153846
8	98043264	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.384615
8	98043265	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.564103
8	98043294	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0377358
8	98043319	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0930233
8	98043320	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0444444
8	98043657	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.189189
8	98043669	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0487805
8	98043991	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.727273
8	98044058	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.7
8	98044059	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.2
8	98044109	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.1
8	98044110	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.727273
9	98075268	A->G	+	ENSG00000095380	NANS	protein_coding	Intron	.	.	Alu	0.363636
12	100033591	A->G	-	ENSG00000280088	AC126474.2	TEC	Intron	.	.	Alu	0.153846
13	100086556	A->G	-	ENSG00000274605	AL355338.1	lincRNA	Intron	.	.	Alu	0.272727
X	101392877	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.166667
X	101392933	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.307692
X	101392994	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.166667
X	101393003	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.28
X	101393016	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.148148
X	101393069	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.111111
4	102810506	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.0246914
4	102810541	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.0545455
4	102810546	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.0307692
4	102810582	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.0714286
14	103682429	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.125
14	103682430	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.1875
14	103682499	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.125
14	103682551	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.363636
14	103682554	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.181818
14	103682604	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	1
14	103682605	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	1
14	103682606	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.461538
4	108623222	A->G	+	ENSG00000109475	RPL34	protein_coding	Intron	.	.	Alu	0.133333
1	111686570	A->G	+	ENSG00000197852	INKA2	protein_coding	Intron	.	.	Alu	0.333333
1	111686584	A->G	+	ENSG00000197852	INKA2	protein_coding	Intron	.	.	Alu	0.153846
10	112449589	A->G	+	ENSG00000151532	VTI1A	protein_coding	Intron	.	.	Alu	0.272727
10	112449594	A->G	+	ENSG00000151532	VTI1A	protein_coding	Intron	.	.	Alu	0.181818
10	112449595	A->G	+	ENSG00000151532	VTI1A	protein_coding	Intron	.	.	Alu	0.181818
11	117159811	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intron	.	.	Alu	0.363636
11	117212550	A->G	-	ENSG00000160613	PCSK7	protein_coding	Intron	.	.	Alu	0.153846
11	117212551	A->G	-	ENSG00000160613	PCSK7	protein_coding	Intron	.	.	Alu	0.153846
11	117216569	A->G	-	ENSG00000160613	PCSK7	protein_coding	Intron	.	.	Alu	0.153846
11	118788940	A->G	-	ENSG00000110367	DDX6	protein_coding	Intron	.	.	Alu	0.0952381
12	121320678	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.230769
12	121320780	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.2
12	122883560	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.05
12	122883618	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.1
12	122883624	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.125
12	122883751	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.461538
8	123344552	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intron	.	.	Alu	0.0571429
12	123473421	A->G	+	ENSG00000188026	RILPL1	protein_coding	Intron	.	.	Alu	0.181818
7	128527100	A->G	-	ENSG00000273270	AC090114.2	lincRNA	Intron	.	.	Alu	0.153846
9	129504304	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.1875
9	129504376	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.111111
9	129504387	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.235294
9	129506678	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.333333
9	129506681	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.266667
9	129506703	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.684211
9	129506718	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	1
9	129506758	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	1
9	129506786	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.166667
12	131897654	A->G	+	ENSG00000279283	AC131009.4	TEC	Intron	.	.	Alu	0.142857
12	131897664	A->G	+	ENSG00000279283	AC131009.4	TEC	Intron	.	.	Alu	0.25
12	132651069	A->G	-	ENSG00000177084	POLE	protein_coding	Intron	.	.	Alu	0.2
12	132651070	A->G	-	ENSG00000177084	POLE	protein_coding	Intron	.	.	Alu	0.3
12	132651142	A->G	-	ENSG00000177084	POLE	protein_coding	Intron	.	.	Alu	0.230769
3	132681471	A->G	-	ENSG00000113971	NPHP3	protein_coding	Intron	.	.	Alu	0.08
5	132926759	A->G	-	ENSG00000072364	AFF4	protein_coding	Intron	.	.	Alu	0.0606061
9	133044025	A->G	+	ENSG00000148308	GTF3C5	protein_coding	Intron	.	.	Alu	0.2
10	133301853	A->G	-	ENSG00000130640	TUBGCP2	protein_coding	Intron	.	.	Alu	0.2
6	137857428	A->G	-	ENSG00000237499	AL357060.1	antisense	Intron	.	.	Alu	0.2
5	140535795	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.103448
5	140535829	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.136364
5	140535847	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.0638298
5	150405998	A->G	-	ENSG00000019582	CD74	protein_coding	Intron	.	.	Alu	0.363636
4	151012973	A->G	-	ENSG00000198589	LRBA	protein_coding	Intron	.	.	Alu	0.333333
7	155004523	A->G	+	ENSG00000273344	PAXIP1-AS1	lincRNA	Intron	.	.	Alu	0.117647
1	155670930	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.416667
1	155670942	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.285714
1	155670951	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.153846
1	155784583	A->G	-	ENSG00000116580	GON4L	protein_coding	Intron	.	.	Alu	0.214286
4	158679794	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.133333
4	158679938	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.285714
4	158679981	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.0740741
4	158680006	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.206897
4	158680035	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.0869565
2	174676430	A->G	-	ENSG00000115935	WIPF1	protein_coding	Intron	.	.	Alu	0.272727
2	174676549	A->G	-	ENSG00000115935	WIPF1	protein_coding	Intron	.	.	Alu	0.125
1	185292561	A->G	-	ENSG00000279838	AL356273.3	TEC	Intron	.	.	Alu	0.214286
1	211358562	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.111111
1	211358585	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.4
1	211358586	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.4
1	224269835	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.5
1	224269847	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.2
2	233140577	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.4
2	233140607	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.1875
2	233140608	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.25
2	233140652	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.2
2	233140681	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.25
2	233140725	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.6
2	233140738	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.2
2	233141298	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.844444
2	233141311	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.244444
2	233141312	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	1
2	233141366	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0392157
2	233141381	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0333333
2	233141383	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0338983
2	233141402	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0444444
2	233141416	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.102564
2	233141417	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0512821
2	233141420	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.117647
2	233141424	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0689655
2	233141446	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.107143
2	233141447	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0833333
2	233141469	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0689655
2	233141473	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.103448
2	233141487	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.25
2	233141517	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.142857
2	233141527	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.214286
2	233141532	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0714286
1	235180333	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intron	.	.	Alu	0.25
9	277048	A->G	+	ENSG00000107099	DOCK8	protein_coding	three_prime_utr	.	.	Alu	0.416667
X	299636	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.153846
X	299646	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.384615
X	299663	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.133333
X	299678	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.636364
X	299702	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	299733	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.166667
X	300140	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.153846
17	441982	A->G	-	ENSG00000183688	RFLNB	protein_coding	three_prime_utr	.	.	Alu	0.0666667
17	1422240	A->G	-	ENSG00000167193	CRK	protein_coding	three_prime_utr	.	.	Alu	0.0666667
17	2417277	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.333333
17	2417351	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.105263
17	2417357	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.466667
17	2418312	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.588235
17	2418382	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.25
17	2418394	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.5
7	2434556	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	2434737	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	2434863	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.2
7	2434868	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.15
7	2434873	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.153846
7	2434886	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.133333
7	2434906	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.222222
7	2434974	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.125
7	2434983	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.1
7	2435014	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.352941
7	2435015	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.111111
7	2435034	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.272727
7	2435095	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	2448013	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	2906270	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.230769
X	2906276	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.666667
4	2938358	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.764706
4	2938364	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.176471
4	2938371	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.117647
4	2938372	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.111111
4	2938396	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.0555556
4	2938398	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.307692
4	2938408	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.486486
4	2938420	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.176471
4	2938437	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.675
4	2938538	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.242424
4	2938620	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.266667
4	2938637	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.393939
4	2938638	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.235294
4	2938644	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.965517
4	2938670	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	1
4	2938674	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.0444444
4	2938682	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.097561
4	2938686	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.0454545
4	2938703	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.285714
4	2938707	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.1875
4	2938711	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.186047
4	2938735	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.794872
4	2938750	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.4
4	2938758	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.5
2	3545012	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.3
2	3545017	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.208333
2	3545047	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.103448
2	3545048	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.0645161
20	3824811	A->G	+	ENSG00000125843	AP5S1	protein_coding	three_prime_utr	.	.	Alu	0.1
20	3824812	A->G	+	ENSG00000125843	AP5S1	protein_coding	three_prime_utr	.	.	Alu	0.157895
20	3870544	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.277778
20	3870545	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.236842
20	3870550	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.0454545
20	3870562	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.829787
20	3870567	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.159091
20	3870574	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.142857
20	3870585	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.0540541
20	3870586	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.111111
20	3870590	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.222222
20	3870616	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.111111
20	3870622	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.142857
20	3870629	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.235294
20	3870955	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.153846
20	3870960	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.125
20	3870961	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.2
20	3870974	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.214286
20	3870981	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.285714
20	3870985	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.166667
20	3871020	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.25
20	3871090	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.230769
20	3871115	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.3
20	3871144	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.166667
20	3871157	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.133333
20	3875295	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.142857
20	3928990	A->G	+	ENSG00000125779	PANK2	protein_coding	three_prime_utr	.	.	Alu	0.2
19	4653604	A->G	+	ENSG00000185361	TNFAIP8L1	protein_coding	three_prime_utr	.	.	Alu	0.2
19	4653661	A->G	+	ENSG00000185361	TNFAIP8L1	protein_coding	three_prime_utr	.	.	Alu	0.6
19	4653713	A->G	+	ENSG00000185361	TNFAIP8L1	protein_coding	three_prime_utr	.	.	Alu	0.166667
9	4710414	A->G	-	ENSG00000147853	AK3	protein_coding	three_prime_utr	.	.	Alu	0.176471
16	4750599	A->G	-	ENSG00000103199	ZNF500	protein_coding	three_prime_utr	.	.	Alu	0.181818
16	4750609	A->G	-	ENSG00000103199	ZNF500	protein_coding	three_prime_utr	.	.	Alu	0.166667
7	5389583	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.529412
7	5389587	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.666667
7	5389592	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.692308
7	5389673	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.4
7	5389674	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.3
12	6531658	A->G	+	ENSG00000010292	NCAPD2	protein_coding	three_prime_utr	.	.	Alu	0.0294118
12	6531685	A->G	+	ENSG00000010292	NCAPD2	protein_coding	three_prime_utr	.	.	Alu	0.03125
17	8270007	A->G	+	ENSG00000178921	PFAS	protein_coding	three_prime_utr	.	.	Alu	0.2
17	8270058	A->G	+	ENSG00000178921	PFAS	protein_coding	three_prime_utr	.	.	Alu	0.176471
11	8686360	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.136364
11	8686361	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.166667
11	8686370	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.25
11	8686396	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0666667
11	8686397	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0645161
11	8687224	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0555556
11	8687235	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.78125
11	8687238	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.137931
11	8687239	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0714286
11	8687249	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0833333
11	8687252	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.25
11	8687278	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.866667
11	8687279	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.625
11	8687288	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.157895
11	8687295	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.235294
11	8687317	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.117647
11	8687342	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.363636
11	8687344	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	1
1	9268015	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	9268033	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.117647
1	9268047	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.2
1	9268141	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.125
1	9268154	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.15
1	9268164	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.173913
1	9268183	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.6
1	9268184	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.538462
1	9271016	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.25
1	9271035	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.6
1	9271042	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.454545
1	9271071	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.15
1	9271117	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.105263
19	9648529	A->G	-	ENSG00000171466	ZNF562	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	10150912	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.2
3	10150933	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.25
3	10150958	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.375
3	10151010	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.238095
3	10151020	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	10151022	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.125
3	10151033	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.25
3	10151127	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.5
3	10151132	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.416667
3	10151810	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0869565
3	10151882	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0645161
3	10151940	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0714286
3	10151946	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0666667
3	10151981	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0857143
3	10152113	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	10152143	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.105263
3	10152182	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0909091
3	10152189	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.322581
3	10152206	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.05
3	10152216	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0425532
1	10457219	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.222222
1	10457233	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	10457243	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	10457257	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.230769
1	10457556	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.916667
1	10457615	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10457616	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10458631	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0967742
1	10458635	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	10458750	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0714286
1	10458764	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0740741
1	10458769	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.08
1	10458774	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	10458787	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.115385
1	10458801	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.08
1	10458804	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0769231
1	10458816	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	10458865	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0714286
1	10458866	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0740741
1	10458919	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0909091
1	10458991	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.285714
1	10459853	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	10459855	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.1875
1	10459875	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.266667
1	10459889	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	10459925	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.266667
1	10460096	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.3
1	10460097	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.3
1	10460117	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.230769
1	10460121	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.214286
1	10460123	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.642857
1	10460133	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.538462
1	10460145	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	10460169	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10460176	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.266667
1	10460207	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.125
1	10460321	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.631579
1	10460393	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.130435
1	10460402	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	10460475	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0714286
1	10460592	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0769231
1	10460626	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.136364
1	10460627	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.210526
1	10460645	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0645161
1	10460658	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0833333
1	10460668	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0810811
1	10460694	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.28
1	10460707	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.08
1	10460710	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.107143
1	10460762	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	10461113	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.285714
1	10461115	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	10461143	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.409091
1	10461180	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0952381
1	10461181	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.25
19	11040472	A->G	+	ENSG00000127616	SMARCA4	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	11145950	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	11145996	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.0731707
19	11146006	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.0697674
19	11146011	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.0512821
19	11146013	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.292683
19	11146049	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.393939
19	11449612	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.833333
19	11449617	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	11449668	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	11449669	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	11449715	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	11449718	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.363636
19	11449769	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.111111
19	11449778	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.15
16	11834868	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.1
16	11834879	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.105263
16	11834956	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	11834963	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.272727
16	11834989	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.818182
16	11835094	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.6
16	11835314	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.1875
16	11835319	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.538462
16	11835320	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.166667
8	11842704	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.178571
8	11842722	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.233333
8	11842734	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.1
8	11842742	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0833333
8	11842745	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0555556
8	11842752	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.138889
8	11842775	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.133333
8	11842796	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.179487
8	11842813	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0526316
8	11842815	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0789474
8	11842818	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.114286
8	11842854	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.2
8	11842910	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.2
8	11842918	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.272727
8	11843017	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.3
8	11843128	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.2
8	11843167	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.521739
8	11843168	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.521739
8	11843176	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.611111
8	11843228	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.133333
8	11843883	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.2
8	11843945	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0857143
8	11843949	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.40625
8	11843964	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.193548
8	11843970	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.117647
8	11843971	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0909091
8	11843981	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.782609
8	11843995	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.107143
8	11844000	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.172414
10	12121033	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.0740741
10	12121034	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.0740741
10	12121127	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.104167
10	12121175	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.103448
10	12121177	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.107143
19	13773189	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	13773192	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.384615
19	13773206	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.230769
19	13773209	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	13773260	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.416667
19	13773288	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	13773376	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	13773384	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.416667
19	13773385	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.666667
19	13773445	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.454545
19	13773477	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	13773505	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.277778
19	13773511	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.1
19	13773525	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.294118
19	13773532	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.857143
19	13773594	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.461538
19	13773604	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	1
19	13773605	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.933333
19	13773608	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	13773797	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	13773855	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.5
19	13773911	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
19	13773913	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	13773925	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.217391
19	13773934	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.105263
10	14907927	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	three_prime_utr	.	.	Alu	0.0588235
10	14907959	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	three_prime_utr	.	.	Alu	0.05
10	14908022	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	three_prime_utr	.	.	Alu	0.0606061
10	14908118	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	three_prime_utr	.	.	Alu	0.137931
10	14908123	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	three_prime_utr	.	.	Alu	0.09375
19	16158414	A->G	+	ENSG00000196684	HSH2D	protein_coding	three_prime_utr	.	.	Alu	0.0810811
19	16551815	A->G	-	ENSG00000127526	SLC35E1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
19	16551892	A->G	-	ENSG00000127526	SLC35E1	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	16551893	A->G	-	ENSG00000127526	SLC35E1	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	16551903	A->G	-	ENSG00000127526	SLC35E1	protein_coding	three_prime_utr	.	.	Alu	0.1875
19	16552016	A->G	-	ENSG00000127526	SLC35E1	protein_coding	three_prime_utr	.	.	Alu	0.0606061
X	16760962	A->G	+	ENSG00000169895	SYAP1	protein_coding	three_prime_utr	.	.	Alu	0.117647
22	17110377	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.147059
22	17110574	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.0869565
22	17110591	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.307692
22	17110647	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.133333
4	17801160	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.545455
4	17801356	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.4
4	17801396	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.7
4	17803117	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0882353
4	17803162	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0833333
4	17803224	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0588235
4	17803229	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0606061
17	18274075	A->G	-	ENSG00000177302	TOP3A	protein_coding	three_prime_utr	.	.	Alu	0.2
19	18366600	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.4
19	18366651	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.636364
19	18366943	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.285714
19	18367041	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.357143
19	18367049	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.6
19	18367091	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.545455
19	18367101	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	18367113	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.416667
19	18367932	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
19	18367943	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.136364
19	18367958	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.2
19	18367966	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.222222
19	18368006	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.0740741
19	18368012	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.321429
19	18368018	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.103448
19	18368022	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.0689655
19	18368035	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
19	18368048	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
19	18368075	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.285714
19	18368093	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.117647
19	18368098	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	18368319	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.105263
1	19215816	A->G	-	ENSG00000127463	EMC1	protein_coding	three_prime_utr	.	.	Alu	0.285714
1	19216137	A->G	-	ENSG00000127463	EMC1	protein_coding	three_prime_utr	.	.	Alu	0.2
1	19258999	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.0461538
1	19259008	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.0363636
1	19259025	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.214286
1	19259059	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.163265
1	19259943	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	19259961	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.230769
1	19259964	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.764706
1	19260007	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.85
1	19260026	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	19260038	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	1
16	19502434	A->G	-	ENSG00000006007	GDE1	protein_coding	three_prime_utr	.	.	Alu	0.0571429
13	19672195	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.166667
13	19672245	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.166667
13	19672262	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.357143
13	19672378	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.0967742
13	19672883	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.3125
13	19672884	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.266667
13	19672889	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.105263
13	19672935	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.545455
13	19672976	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.5
1	20651958	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0267857
1	20651964	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0560748
1	20651990	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0238095
1	20652022	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.025
1	20652030	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0228311
1	20652097	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0290698
19	21119242	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	21119296	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	21119314	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	21119317	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	21187573	A->G	+	ENSG00000196705	ZNF431	protein_coding	three_prime_utr	.	.	Alu	0.130435
19	21187576	A->G	+	ENSG00000196705	ZNF431	protein_coding	three_prime_utr	.	.	Alu	0.08
19	21187578	A->G	+	ENSG00000196705	ZNF431	protein_coding	three_prime_utr	.	.	Alu	0.08
16	21640646	A->G	+	ENSG00000140749	IGSF6	protein_coding	three_prime_utr	.	.	Alu	0.352941
16	21640647	A->G	+	ENSG00000140749	IGSF6	protein_coding	three_prime_utr	.	.	Alu	0.25
16	21640656	A->G	+	ENSG00000140749	IGSF6	protein_coding	three_prime_utr	.	.	Alu	0.0952381
19	21806237	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0833333
19	21806239	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.666667
19	21806242	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0377358
19	21806265	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.047619
19	21806288	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	21806298	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0740741
19	21806344	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0740741
19	21806358	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.176471
19	21806359	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.352941
19	21806360	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	21806437	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.1
19	21806438	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.2
19	21806440	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.25
14	22834767	A->G	+	ENSG00000172590	MRPL52	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	23388781	A->G	-	ENSG00000168434	COG7	protein_coding	three_prime_utr	.	.	Alu	0.166667
X	24077103	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0454545
X	24077168	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0535714
X	24077169	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0632911
X	24077208	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0784314
X	24077252	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0333333
X	24077266	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0559441
22	24572603	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.117647
22	24572606	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.176471
22	24572607	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.1
22	24572610	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.111111
22	24572611	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.166667
22	24572634	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.0714286
22	24572640	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.166667
22	24572646	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	1
22	24572667	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.205882
22	25725763	A->G	+	ENSG00000100077	GRK3	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	25986386	A->G	+	ENSG00000112343	TRIM38	protein_coding	three_prime_utr	.	.	Alu	0.142857
6	25986395	A->G	+	ENSG00000112343	TRIM38	protein_coding	three_prime_utr	.	.	Alu	0.0967742
1	26876298	A->G	-	ENSG00000142751	GPN2	protein_coding	three_prime_utr	.	.	Alu	0.4
2	27156582	A->G	-	ENSG00000163792	TCF23	protein_coding	three_prime_utr	.	.	Alu	0.545455
17	27312856	A->G	+	ENSG00000109046	WSB1	protein_coding	three_prime_utr	.	.	Alu	0.0666667
17	27312930	A->G	+	ENSG00000109046	WSB1	protein_coding	three_prime_utr	.	.	Alu	0.030303
1	28497848	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.0576923
1	28497917	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.0606061
16	28965572	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.030303
16	28965612	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.030303
16	29665112	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0701754
16	29665124	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.025641
16	29665135	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0227273
16	29665154	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0307692
16	29665184	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0416667
16	29665185	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0434783
16	29665239	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0285714
16	29665253	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0307692
16	29665308	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0307692
16	29665318	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0254237
16	29666269	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0363636
16	29667514	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.101449
16	29667522	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.241935
16	29667523	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.873016
16	29667531	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0377358
16	29667544	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29667553	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0588235
16	29667566	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.28
16	29667577	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.09375
16	29667595	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.21875
16	29667599	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0588235
16	29667600	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29667614	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.106383
16	29667615	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0425532
16	29667616	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0909091
16	29667617	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0930233
16	29667618	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0681818
16	29667620	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0444444
16	29667625	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.06
16	29667629	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0638298
16	29667655	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.163934
16	29667656	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.109375
16	29667665	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.112903
16	29667669	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.155172
16	29667683	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0384615
16	29667696	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0461538
16	29667697	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0555556
16	29667717	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0307692
16	29667731	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.4
16	29667741	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0344828
16	29667759	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0943396
16	29667760	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0566038
16	29667782	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0294118
16	29667791	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.028169
16	29668212	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.30303
16	29668220	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29668229	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.05
16	29668238	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.103448
16	29668252	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.514286
16	29668255	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.631579
16	29668290	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.103448
16	29668298	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	29668307	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.454545
16	29668315	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.105263
16	29668316	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.157895
16	29668317	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.526316
16	29668318	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.411765
16	29668335	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.2
16	29668481	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.138889
16	29668493	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0789474
16	29668501	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.447368
16	29668510	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.636364
16	29668526	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.129032
16	29668529	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.129032
16	29668531	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.151515
16	29668539	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0526316
16	29668541	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.108108
16	29668565	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.269231
16	29668578	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.296296
16	29668580	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29668637	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.363636
16	29668669	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.129032
16	29668670	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0909091
16	29668683	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.184211
16	29668695	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	29668699	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0555556
16	29668700	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0857143
16	29668710	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.333333
16	29668711	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0967742
16	29668713	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29668724	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0681818
16	29668876	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0485437
16	29668884	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29668892	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.101852
16	29668893	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0803571
16	29668913	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0212766
16	29668946	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29668947	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1
16	29668962	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29668964	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0384615
16	29668966	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.264151
16	29668995	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0724638
16	29668996	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.188406
16	29668997	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0882353
16	29668998	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0441176
16	29669001	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.337838
16	29669005	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.106667
16	29669027	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.541667
16	29669030	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0210526
16	29669037	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.141414
16	29669042	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.144231
16	29669045	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.146789
16	29669050	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0288462
16	29669054	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0480769
16	29669069	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0610687
16	29669073	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0852713
16	29669084	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0631579
16	29669096	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.04
16	29669097	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0731707
16	29669101	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.189655
16	29669128	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0315789
16	29669241	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	29669258	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.461538
16	29669276	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29669279	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	29669306	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	29669319	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29669327	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	29669331	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	29669341	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.625
16	29669386	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	29669398	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0540541
16	29669401	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.375
16	29669410	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.41791
16	29669411	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.911765
16	29669440	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.113636
16	29669462	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0289855
16	29669463	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.75
16	29669475	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669484	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.027027
16	29669601	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669615	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0253165
16	29669616	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0506329
16	29669624	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669625	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.454545
16	29669630	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0512821
16	29669633	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0789474
16	29669647	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0465116
16	29669651	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.05
16	29669670	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.85
16	29669678	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.521739
16	29669679	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.708333
16	29669684	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0784314
16	29669690	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29669717	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0322581
16	29669719	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0307692
16	29669724	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0307692
16	29669729	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.2
16	29669756	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.44
16	29669782	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29669797	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.357143
16	29669817	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.25
16	29669821	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.230769
16	29669826	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.172414
16	29669828	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1875
16	29669831	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29669859	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0645161
16	29669866	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	29669867	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	29669872	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0588235
16	29669948	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0408163
16	29669959	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0774194
16	29669967	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0915493
16	29669972	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0206897
16	29669977	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0425532
16	29669982	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.375
16	29670010	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.112782
16	29670018	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0921053
16	29670046	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.062201
16	29670047	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0829268
16	29670050	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.292308
16	29670054	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0761421
16	29670060	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0740741
16	29670090	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0375587
16	29670099	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.037234
16	29670103	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0421053
16	29670108	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0726257
16	29670123	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0801688
16	29670137	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.308824
16	29670139	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.394089
16	29670150	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0900901
16	29670153	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107759
16	29670177	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.201031
16	29670186	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0328638
16	29670200	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.03
16	29670201	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0703518
16	29670216	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.035533
16	29670232	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.138393
16	29670238	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125604
16	29670239	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.268519
16	29670244	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0555556
16	29670288	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.222222
16	29670289	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.251208
16	29670290	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.123596
16	29670303	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0219298
16	29670305	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0265487
16	29670311	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.026455
16	29670312	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0412371
16	29670313	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.109195
16	29670324	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.052356
16	29670327	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0612245
16	29670328	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.078125
16	29670329	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0638298
16	29670336	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0208333
16	29670338	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0213904
16	29670342	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0532544
16	29670346	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.222222
16	29670368	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.223404
16	29670369	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.154255
16	29670374	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0512821
16	29670378	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.208791
16	29670395	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0454545
16	29670397	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0225989
16	29670398	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.027933
16	29670401	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0265957
16	29670421	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0533333
16	29670430	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0866142
16	29670439	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.12037
16	29670441	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0265487
16	29670459	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0995025
16	29670477	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0218978
13	30457256	A->G	-	ENSG00000189403	HMGB1	protein_coding	three_prime_utr	.	.	Alu	0.1
13	30457483	A->G	-	ENSG00000189403	HMGB1	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	30678436	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0909091
8	30678458	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.102564
8	30678463	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.540541
8	30678499	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.117647
8	30678561	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.225806
8	30678608	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.115385
8	30678626	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0487805
8	30678634	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.219512
8	30678635	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.121951
8	30678984	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0833333
8	30679027	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.1875
8	30679049	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.142857
18	32068941	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.117647
18	32068976	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.12
18	32068978	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.08
18	32068979	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.36
18	32068984	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.36
18	32069036	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.148148
18	32069039	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.103448
18	32069040	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0689655
18	32069041	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0714286
18	32069054	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.142857
18	32069081	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.105263
18	32069140	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.25
18	32069158	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.230769
18	32069164	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	32231344	A->G	+	ENSG00000084623	EIF3I	protein_coding	three_prime_utr	.	.	Alu	0.0218978
2	32307650	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	32307672	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.103448
2	32307673	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0967742
2	32307740	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.25
2	32307741	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.296296
2	32307749	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	32307771	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.105263
2	32307796	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0645161
2	32307809	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.242424
2	32307814	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0909091
2	32307818	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.1875
2	32307880	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.1
2	32308458	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	32308459	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	32308464	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.538462
2	32308485	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.25
2	32308527	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.4
2	32308528	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.357143
2	32308549	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.266667
2	32308552	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.2
2	32308553	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	32308558	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.416667
2	32308566	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	32308592	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.4
2	32312277	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.153846
2	32312322	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.153846
2	32312326	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.230769
2	32312327	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	32312328	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	32312367	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	32312440	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.117647
2	32312826	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.363636
2	32312870	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.125
2	32312876	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.125
2	32313628	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	32313922	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.230769
2	32315538	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	32315602	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.125
1	32682585	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	32682595	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	32682681	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.3
1	32683022	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.384615
1	32683090	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.545455
1	32683095	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	32683105	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.125
1	32683162	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	32683188	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	32683194	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.0833333
6	33005238	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.130435
6	33005250	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.117647
6	33005300	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	33005368	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.0869565
6	33005380	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.96
6	33005409	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.157895
6	33005440	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.846154
6	33005453	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.117647
6	33005646	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.7
6	33005675	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	33005780	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.3
6	33005853	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.166667
6	33005854	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.2
6	33300776	A->G	-	ENSG00000231925	TAPBP	protein_coding	three_prime_utr	.	.	Alu	0.0925926
6	33300844	A->G	-	ENSG00000231925	TAPBP	protein_coding	three_prime_utr	.	.	Alu	0.0555556
6	33300858	A->G	-	ENSG00000231925	TAPBP	protein_coding	three_prime_utr	.	.	Alu	0.0714286
21	33355830	A->G	+	ENSG00000142166	IFNAR1	protein_coding	three_prime_utr	.	.	Alu	0.142857
15	34231650	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.294118
15	34231666	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.277778
15	34231722	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.142857
15	34231728	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.454545
15	34231754	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.444444
15	34231863	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	35601198	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.25
1	35601199	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	35601204	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.285714
1	35601289	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	35602076	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0444444
1	35602148	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.212121
1	35602151	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	35602159	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.428571
1	35602183	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	35602216	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.692308
1	35602232	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0816327
1	35602237	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	1
1	35602249	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0425532
1	35602285	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.783784
1	35602324	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.423077
1	35602583	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.666667
1	35602595	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0833333
1	35602609	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.666667
1	35602630	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.552632
1	35602636	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	35602642	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.135135
1	35602674	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	35602675	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.125
1	35602677	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	35602694	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	35602724	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	35602768	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	35602769	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.428571
22	35661159	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.416667
22	35661178	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.214286
22	35661201	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.153846
22	35661204	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.307692
22	35661214	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.416667
22	35661237	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.75
22	35661238	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.181818
22	36488301	A->G	-	ENSG00000100350	FOXRED2	protein_coding	three_prime_utr	.	.	Alu	0.117647
22	36488379	A->G	-	ENSG00000100350	FOXRED2	protein_coding	three_prime_utr	.	.	Alu	0.2
2	37103225	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.3
2	37103288	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	37103292	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.2
2	37103293	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	37103360	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	37103471	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.357143
2	37103895	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.190476
2	37103922	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.1
2	37103934	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	37103973	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.1875
2	37103976	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.1875
2	37104028	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.7
2	37104382	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.727273
2	37104388	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.3
2	37104502	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.136364
2	37104568	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.09375
2	37104602	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.294118
2	37104607	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.176471
2	37202383	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.28
2	37202390	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	37202525	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.0434783
2	37202534	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.134615
2	37202546	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.0465116
2	37202590	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.342105
2	37202594	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.15
2	37202595	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.102564
2	37204342	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.16
2	37204443	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	37204458	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.0869565
2	37204461	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.176471
2	37204538	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.1
9	37503316	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.0731707
9	37503349	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.0487805
9	37503370	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.0606061
9	37503395	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.137931
9	37503457	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.148936
9	37503493	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.125
9	37503541	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.0526316
19	37540198	A->G	+	ENSG00000188227	ZNF793	protein_coding	three_prime_utr	.	.	Alu	0.2
1	37860922	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.466667
1	37860971	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.4375
1	37860993	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	37861028	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	37861032	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	37861033	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	37861056	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.461538
1	37861101	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.125
1	37861118	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.2
9	37864318	A->G	+	ENSG00000122741	DCAF10	protein_coding	three_prime_utr	.	.	Alu	0.545455
17	38849507	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.117647
17	38849532	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.3
17	38849582	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.3
17	38849586	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.75
17	38849587	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	38849890	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.25
8	38973005	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	38973012	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.153846
8	38973017	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.25
22	39018748	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0322581
22	39018749	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0314961
22	39018767	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0357143
22	39018871	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.165138
22	39018877	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.15
22	39018907	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0763359
22	39019867	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.4
22	39019869	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.111111
22	39019886	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0869565
22	39019900	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.26087
22	39019906	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.347826
22	39020030	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0869565
22	39020070	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0384615
22	39020076	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	39257148	A->G	-	ENSG00000108306	FBXL20	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	39491905	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	39491907	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	39491951	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	39491952	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	39491953	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.230769
19	39491979	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.363636
19	39492231	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.2
7	40067964	A->G	+	ENSG00000065883	CDK13	protein_coding	three_prime_utr	.	.	Alu	0.25
7	40070353	A->G	+	ENSG00000065883	CDK13	protein_coding	three_prime_utr	.	.	Alu	0.230769
17	40283050	A->G	+	ENSG00000171475	WIPF2	protein_coding	three_prime_utr	.	.	Alu	0.6
3	40466407	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.235294
3	40466425	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.142857
3	40466426	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.173913
3	40466431	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.333333
3	40466434	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.421053
3	40466452	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.269231
3	40466470	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	40466484	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.235294
3	40466485	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.125
3	40466494	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.125
5	40825782	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.0869565
5	40825843	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.1
5	40826916	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.08
5	40827849	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.0645161
8	41542277	A->G	+	ENSG00000147536	GINS4	protein_coding	three_prime_utr	.	.	Alu	0.9
8	41543950	A->G	+	ENSG00000147536	GINS4	protein_coding	three_prime_utr	.	.	Alu	0.545455
19	41871472	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.2
19	41871486	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	41872634	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.384615
19	41872642	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.461538
19	41872643	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	41872649	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	41872774	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.2
19	41872775	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.52
19	41872804	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.666667
19	41872816	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.666667
6	42886943	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0526316
6	42888216	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.5
6	42888224	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.916667
6	42888234	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.25
6	42888241	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.461538
6	42888269	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.125
6	42888291	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.615385
6	42888418	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.3
6	42888438	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.214286
6	42889167	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0652174
6	42889179	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.72549
6	42889199	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0681818
6	42889216	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0571429
6	42889240	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0625
6	42889245	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.189189
6	42889285	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0681818
6	42889290	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.075
6	42889293	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.365854
6	42889319	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0714286
6	42889329	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0625
6	42889361	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0425532
6	42889373	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.180328
6	42889382	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0483871
6	42889391	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0322581
6	42889398	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0757576
6	42889406	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0307692
8	43020436	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	43020458	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.384615
8	43020459	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.307692
8	43020505	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.2
8	43020514	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.153846
8	43020529	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.272727
8	43020553	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3
8	43020639	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.266667
8	43020646	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	43020671	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.133333
8	43020837	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.4
8	43020843	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.409091
8	43020845	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.297872
8	43020846	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.23913
8	43020872	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
8	43020905	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.12766
8	43020915	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.295455
8	43020924	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
8	43020925	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.5
8	43020939	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.097561
8	43020945	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0540541
8	43020952	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0789474
8	43020955	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	43020959	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0857143
8	43020963	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0571429
8	43020981	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.255814
8	43021014	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.166667
8	43021023	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.125
8	43021034	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	43021368	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0571429
8	43021378	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0571429
8	43021383	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.114286
8	43021403	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
8	43021404	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0909091
8	43021443	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.705882
8	43021470	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.130435
8	43021483	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.105263
8	43021486	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.736842
8	43021500	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.166667
8	43021503	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.117647
8	43021544	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.173913
8	43021562	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.1
8	43021575	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.333333
8	43021577	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
8	43021798	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3
8	43021808	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.133333
8	43023095	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.454545
8	43023150	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.25
8	43023151	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.230769
17	43044901	A->G	-	ENSG00000012048	BRCA1	protein_coding	three_prime_utr	.	.	Alu	0.0645161
17	43219682	A->G	+	ENSG00000184988	TMEM106A	protein_coding	three_prime_utr	.	.	Alu	0.5
17	43219689	A->G	+	ENSG00000184988	TMEM106A	protein_coding	three_prime_utr	.	.	Alu	0.133333
3	44749144	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.375
3	44749265	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	44749267	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.444444
3	44749281	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.2
3	44749289	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.333333
3	44749367	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.363636
3	44749387	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.357143
7	44801890	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.727273
7	44801920	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.384615
7	44802329	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.586207
7	44802332	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.227273
7	44802334	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.136364
7	44802423	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.0444444
7	44835063	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.2
20	45079130	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.105263
20	45079135	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.705882
20	45079150	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.133333
20	45079200	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.125
20	45079201	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.1875
20	45079204	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.133333
3	45680835	A->G	+	ENSG00000144791	LIMD1	protein_coding	three_prime_utr	.	.	Alu	0.2
3	45680849	A->G	+	ENSG00000144791	LIMD1	protein_coding	three_prime_utr	.	.	Alu	0.272727
3	45680850	A->G	+	ENSG00000144791	LIMD1	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	45703697	A->G	+	ENSG00000011478	QPCTL	protein_coding	three_prime_utr	.	.	Alu	0.818182
12	45954852	A->G	-	ENSG00000139218	SCAF11	protein_coding	three_prime_utr	.	.	Alu	0.0697674
12	45954853	A->G	-	ENSG00000139218	SCAF11	protein_coding	three_prime_utr	.	.	Alu	0.047619
12	45955209	A->G	-	ENSG00000139218	SCAF11	protein_coding	three_prime_utr	.	.	Alu	0.125
1	46364225	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.0769231
1	46364438	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.0909091
1	46364494	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.0689655
1	46364552	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.08
1	46364561	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	46364621	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	46364622	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	46364626	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.148148
11	46677677	A->G	-	ENSG00000175220	ARHGAP1	protein_coding	three_prime_utr	.	.	Alu	1
8	47977073	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0531915
8	47977099	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0434783
8	47977112	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.021978
8	47977549	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.283019
8	47977554	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0322581
8	47977687	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.113333
8	47977728	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0352113
16	48353290	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.230769
16	48353304	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	48353359	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.2
16	48353385	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.230769
19	48453396	A->G	+	ENSG00000105447	GRWD1	protein_coding	three_prime_utr	.	.	Alu	0.25
19	48453467	A->G	+	ENSG00000105447	GRWD1	protein_coding	three_prime_utr	.	.	Alu	0.111111
X	48577960	A->G	+	ENSG00000102317	RBM3	protein_coding	three_prime_utr	.	.	Alu	0.0332717
3	48748204	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.0588235
3	48749558	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.8
3	48749685	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	48750129	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.272727
3	48750147	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.142857
3	48750241	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	48750251	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.666667
3	48750300	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.285714
12	50153854	A->G	-	ENSG00000139624	CERS5	protein_coding	three_prime_utr	.	.	Alu	0.3
14	50325958	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.384615
14	50325998	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.153846
14	50326005	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.125
14	50326055	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0952381
14	50326069	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.296296
14	50326070	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.142857
14	50326083	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.214286
14	50326089	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0769231
14	50326109	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0833333
14	50326110	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.105263
14	50326115	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0714286
14	50326119	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.157895
14	50326145	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0540541
14	50326179	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0740741
14	50326859	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.285714
14	50326985	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.266667
14	50327149	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.272727
14	50327150	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.181818
14	50327185	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.166667
14	50327198	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.615385
14	50327214	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.25
14	50327322	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.545455
14	50327323	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.181818
14	50327535	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.6
14	50327566	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.25
14	50327569	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.142857
14	50327590	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.4
14	50327604	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.785714
14	50327606	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.142857
14	50327665	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.4
14	50327674	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	50930419	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.2
12	50930475	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.416667
12	50930530	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.1875
12	50930540	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.133333
12	50930713	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	50930723	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.2
12	50930844	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.2
12	50930856	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.4
12	50931454	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.666667
12	50931455	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.133333
12	50931497	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.21875
12	50931504	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	50931505	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.162162
12	50931523	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.294118
12	50931564	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.419355
12	50931568	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.28
12	50931590	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.244898
12	50931591	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0980392
12	50931596	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	50931600	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0714286
12	50931607	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.214286
12	50931617	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0816327
12	50931632	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.047619
12	50931636	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.06
12	50931657	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.209302
12	50931694	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0666667
12	50931754	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.4375
12	50931800	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0416667
12	50931812	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.04
12	50931827	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.04
13	51444637	A->G	-	ENSG00000102786	INTS6	protein_coding	three_prime_utr	.	.	Alu	0.2
15	51913757	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.142857
15	51913775	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.307692
15	51913919	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.166667
15	51913933	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.142857
15	51913938	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.357143
19	52031741	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.235294
19	52031763	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	52031832	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	52031835	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.642857
19	52031898	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.473684
19	52031913	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.0909091
19	52031934	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.125
19	52031953	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	52031956	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.941176
19	52031958	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.117647
1	52373126	A->G	-	ENSG00000085840	ORC1	protein_coding	three_prime_utr	.	.	Alu	0.117647
14	52775699	A->G	-	ENSG00000100522	GNPNAT1	protein_coding	three_prime_utr	.	.	Alu	0.2
14	52775707	A->G	-	ENSG00000100522	GNPNAT1	protein_coding	three_prime_utr	.	.	Alu	0.461538
1	52825736	A->G	+	ENSG00000162378	ZYG11B	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	54099505	A->G	+	ENSG00000116205	TCEANC2	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	54353871	A->G	-	ENSG00000167613	LAIR1	protein_coding	three_prime_utr	.	.	Alu	0.0625
X	54560763	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.789474
X	54560777	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.1875
X	54560786	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.4375
X	54560907	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	1
X	54560917	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.583333
X	54560919	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.666667
X	54560920	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.583333
X	54560925	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.166667
X	54560946	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.454545
X	54560992	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	1
X	54561013	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0833333
X	54561029	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0869565
X	54561032	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.173913
X	54561061	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0882353
1	54638952	A->G	+	ENSG00000162390	ACOT11	protein_coding	three_prime_utr	.	.	Alu	0.25
4	55960647	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.2
4	55960669	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.172414
4	55960670	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	55960678	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.0769231
4	55960738	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.0689655
4	55960739	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.0714286
4	55960747	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.0666667
8	56067496	A->G	-	ENSG00000008988	RPS20	protein_coding	three_prime_utr	.	.	Alu	0.363636
12	56229614	A->G	+	ENSG00000139579	NABP2	protein_coding	three_prime_utr	.	.	Alu	0.0350877
4	56459960	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.28125
4	56459965	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.212121
4	56459993	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.15625
4	56460020	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0740741
4	56460084	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0851064
4	56460096	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.156863
4	56460109	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0377358
4	56460125	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.690909
4	56460126	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0612245
4	56460147	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.216216
4	56460149	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.193548
4	56460155	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0512821
4	56460163	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0769231
4	56460167	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.125
4	56460707	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.027027
4	56460709	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.443038
4	56460713	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.27027
4	56460751	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.5
4	56460794	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0684932
4	56460851	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.379747
4	56460856	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0285714
4	56460883	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0357143
4	56460892	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.169492
4	56460912	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.171429
4	56460916	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.4
4	56460921	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.931034
4	56460926	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0348837
4	56460931	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.043956
4	56460950	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0873786
3	58318551	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0606061
3	58318611	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0625
3	58318745	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.08
3	58318911	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.142857
17	59203477	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.5
17	59203501	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.181818
17	59203603	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.148148
17	59203604	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.107143
17	59203649	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0833333
17	59203659	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0909091
17	59203660	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.130435
17	59203694	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.111111
17	59203697	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.294118
17	59203698	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.5625
17	59203703	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.125
17	59203706	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.230769
17	59203711	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.230769
17	59203715	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.25
17	59203753	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.148148
17	59203764	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.421053
17	59203789	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0625
17	59204130	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0377358
17	59204152	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0555556
17	59204234	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0454545
17	59204275	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0588235
17	59204328	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.117647
17	59204446	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0571429
17	59204583	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0461538
17	59204661	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0322581
15	63152590	A->G	-	ENSG00000185088	RPS27L	protein_coding	three_prime_utr	.	.	Alu	0.4
11	63956833	A->G	+	ENSG00000110583	NAA40	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	64322886	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.105263
17	64322887	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.128205
17	64322997	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
15	64364763	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.131579
15	64364869	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0487805
15	64365079	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0606061
15	64365091	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.2
15	64365274	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0769231
15	64365275	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.05
15	64365331	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0689655
15	64365340	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0588235
15	64365348	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0465116
17	64468339	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.133333
17	64468347	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	1
17	64468418	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.25
17	64468498	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.2
17	64468523	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.125
15	65659396	A->G	-	ENSG00000074621	SLC24A1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
15	65659409	A->G	-	ENSG00000074621	SLC24A1	protein_coding	three_prime_utr	.	.	Alu	0.08
7	66153875	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.217391
7	66153883	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.15
7	66153899	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.0833333
7	66153981	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.133333
7	66153982	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.133333
7	66153993	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.136364
7	66154256	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	66154305	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.666667
7	66154357	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.25
7	66154360	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.166667
7	66154366	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	66154379	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.25
15	66333542	A->G	+	ENSG00000166938	DIS3L	protein_coding	three_prime_utr	.	.	Alu	0.176471
15	66333543	A->G	+	ENSG00000166938	DIS3L	protein_coding	three_prime_utr	.	.	Alu	0.117647
15	66333608	A->G	+	ENSG00000166938	DIS3L	protein_coding	three_prime_utr	.	.	Alu	0.0454545
1	67409006	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.714286
1	67409013	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.315789
1	67409014	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.235294
1	67409048	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.5
1	67409142	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	67409166	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.266667
11	68755439	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.108696
11	68755457	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0571429
11	68755482	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.3
11	68755548	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0588235
11	68755577	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0493827
11	68755579	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0357143
11	68755580	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0240964
11	68755586	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0394737
11	68755587	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0394737
11	68755604	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.123077
11	68755606	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.046875
11	68755612	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.222222
11	68755614	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0508475
11	68755659	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0309278
11	68755660	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0392157
11	68755681	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0247934
11	68755869	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.149533
11	68755879	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0873786
11	68755888	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0952381
11	68755929	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.310345
11	68755931	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0724638
11	68755948	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0215054
11	68755951	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0280374
11	68755957	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0258621
11	68755965	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.092437
11	68755966	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.254098
11	68755990	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0555556
11	68756000	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.576923
11	68756003	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0588235
11	68756004	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.447761
11	68756025	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0487805
11	68756029	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.108108
11	68756065	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.103448
11	68756066	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.214286
11	68756074	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.1
12	68766291	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.2
12	68767396	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.363636
12	68767410	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.583333
12	68767413	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.153846
12	68767419	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.384615
5	69210139	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0344828
5	69210179	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0444444
5	69210182	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0253165
5	69210267	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.12
5	69280917	A->G	-	ENSG00000183323	CCDC125	protein_coding	three_prime_utr	.	.	Alu	0.272727
16	70248674	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.583333
16	70248678	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	70248685	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	70248707	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.0909091
16	70248718	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.111111
16	70248723	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.1875
16	70248733	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.363636
16	70372975	A->G	+	ENSG00000168872	DDX19A	protein_coding	three_prime_utr	.	.	Alu	0.193548
16	70372977	A->G	+	ENSG00000168872	DDX19A	protein_coding	three_prime_utr	.	.	Alu	0.0689655
16	70372978	A->G	+	ENSG00000168872	DDX19A	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	70373115	A->G	+	ENSG00000168872	DDX19A	protein_coding	three_prime_utr	.	.	Alu	0.0377358
6	70589188	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	70589226	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.9
12	71703142	A->G	+	ENSG00000139291	TMEM19	protein_coding	three_prime_utr	.	.	Alu	0.181818
10	72234879	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.181818
10	72234934	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.4
10	72234949	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.3
10	72235004	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.416667
10	72235380	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.2
11	72286035	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.2
11	72286142	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.333333
11	72286143	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.416667
11	72286537	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.545455
11	72286539	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.545455
11	72286562	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.2
11	72289708	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.153846
15	72590969	A->G	+	ENSG00000260534	AC100827.3	sense_overlapping	three_prime_utr	.	.	Alu	0.454545
15	72591038	A->G	+	ENSG00000260534	AC100827.3	sense_overlapping	three_prime_utr	.	.	Alu	0.166667
15	72591101	A->G	+	ENSG00000260534	AC100827.3	sense_overlapping	three_prime_utr	.	.	Alu	0.363636
15	72591102	A->G	+	ENSG00000260534	AC100827.3	sense_overlapping	three_prime_utr	.	.	Alu	0.3
10	73249034	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0327869
10	73249057	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.180851
10	73249059	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.228261
10	73249083	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.166667
10	73249086	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0266667
10	73249087	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.04
10	73249088	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.04
10	73249096	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.05
10	73249097	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0666667
10	73249114	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0357143
10	73249118	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.202703
10	73249122	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0266667
10	73249155	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0379747
10	73249197	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.488372
10	73249827	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.176471
10	73249833	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.117647
10	73249962	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.2
10	73249963	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.137931
10	73250023	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0869565
10	73250086	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.125
10	73250163	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.461538
6	73594290	A->G	-	ENSG00000119899	SLC17A5	protein_coding	three_prime_utr	.	.	Alu	0.25
14	74060272	A->G	-	ENSG00000119711	ALDH6A1	protein_coding	three_prime_utr	.	.	Alu	0.1875
14	74060273	A->G	-	ENSG00000119711	ALDH6A1	protein_coding	three_prime_utr	.	.	Alu	0.1875
7	74231776	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0392157
7	74231791	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.030303
7	74231808	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.025641
7	74231817	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0561798
7	74231844	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.027027
7	74231856	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0285714
7	74231859	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0416667
7	74231862	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0294118
7	74231883	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0684932
7	74231884	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0684932
7	74231966	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0576923
14	74735829	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.25
14	74735841	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.142857
14	74736031	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.153846
14	74736145	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.09375
14	74736153	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.40625
14	74736154	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.322581
14	74736353	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.133333
14	74736362	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.210526
14	74736364	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.555556
14	74736394	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.3125
12	75496002	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	75496033	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.157895
12	75496034	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.588235
12	75496066	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.153846
12	75496100	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.611111
12	75496101	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.611111
12	75496115	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.16
12	75496132	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.16
12	75496272	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.586207
12	75496273	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.111111
12	75496341	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.333333
16	75599219	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.0909091
17	75889152	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.0769231
17	75889193	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.0625
17	75889326	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.0740741
17	75889858	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.2
17	76779132	A->G	+	ENSG00000092931	MFSD11	protein_coding	three_prime_utr	.	.	Alu	0.153846
7	77781926	A->G	+	ENSG00000187257	RSBN1L	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	77827502	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0545455
X	77827509	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0338983
X	77827510	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.192982
X	77827544	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.109091
X	77827557	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0754717
X	77827566	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0298507
X	77827570	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0434783
X	77827621	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0961538
X	77827624	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.163265
X	77827635	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.157895
X	77827682	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0697674
X	77827690	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.047619
X	77827712	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0465116
X	77827729	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.105263
X	77828077	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.230769
X	77828176	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.133333
X	77828226	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.357143
X	77828331	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.363636
11	78068663	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.7
11	78068904	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.272727
11	78069026	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.3
11	78069027	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.1
11	78069057	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.25
9	78273692	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.153846
9	78273704	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.8
9	78275836	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.133333
9	78275840	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.133333
5	80627466	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.05
5	80627470	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.05
5	80627474	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.166667
5	80627492	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.131579
5	80627510	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.194444
5	80627542	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.09375
5	80627549	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.0714286
5	80627559	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.26087
5	80627611	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.4
5	80628007	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.333333
5	80628036	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.142857
5	80628087	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.2
15	83005409	A->G	-	ENSG00000169609	C15orf40	protein_coding	three_prime_utr	.	.	Alu	0.428571
15	83005413	A->G	-	ENSG00000169609	C15orf40	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	85319250	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0406504
2	85319328	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0217391
2	85319334	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0533333
2	85319351	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0666667
2	85319394	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0555556
2	85319396	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0326087
2	85610279	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	85610674	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.384615
2	85610675	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	85610702	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.222222
2	85610721	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	88261759	A->G	-	ENSG00000163644	PPM1K	protein_coding	three_prime_utr	.	.	Alu	0.0833333
1	89182709	A->G	-	ENSG00000162654	GBP4	protein_coding	three_prime_utr	.	.	Alu	0.25
16	89533285	A->G	+	ENSG00000197912	SPG7	protein_coding	three_prime_utr	.	.	Alu	0.2
16	89563498	A->G	+	ENSG00000167526	RPL13	protein_coding	three_prime_utr	.	.	Alu	0.176471
16	89563618	A->G	+	ENSG00000167526	RPL13	protein_coding	three_prime_utr	.	.	Alu	0.384615
15	90083229	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0731707
15	90083265	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0204082
15	90083271	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0408163
15	90083277	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0208333
15	90083297	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0253165
15	90083360	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0535714
15	90083406	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0434783
15	90083408	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0652174
7	92090369	A->G	+	ENSG00000127914	AKAP9	protein_coding	three_prime_utr	.	.	Alu	0.416667
7	92090370	A->G	+	ENSG00000127914	AKAP9	protein_coding	three_prime_utr	.	.	Alu	0.25
7	92090432	A->G	+	ENSG00000127914	AKAP9	protein_coding	three_prime_utr	.	.	Alu	0.5
5	96917825	A->G	+	ENSG00000164308	ERAP2	protein_coding	three_prime_utr	.	.	Alu	0.0263158
8	97726929	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0952381
8	97727253	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0952381
8	97727366	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0545455
8	97727380	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0322581
12	98548843	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.142857
12	98549042	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.176471
12	98549046	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.454545
12	98549053	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.105263
12	98549108	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	98549233	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.117647
12	98549255	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.95
12	98549318	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.380952
12	98549324	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.2
12	98549325	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.178571
12	98549404	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.0526316
12	98549424	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.047619
10	100232927	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.2
10	100233036	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.3
X	101009570	A->G	-	ENSG00000188917	TRMT2B	protein_coding	three_prime_utr	.	.	Alu	0.142857
15	101070748	A->G	+	ENSG00000154237	LRRK1	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	101090367	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.105263
7	101091477	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.235294
7	101091512	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.0740741
7	101091517	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.444444
7	101091531	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.25
7	101091550	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.111111
7	101091551	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.117647
7	101091569	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.125
7	101091571	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.133333
7	101091573	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.222222
7	101091574	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.111111
7	101091593	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.625
7	101091606	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.266667
7	101091607	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.642857
7	101091612	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.263158
7	101093709	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.228571
7	101093710	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.2
7	101093715	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.0487805
7	101095124	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.047619
7	101096069	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.0666667
2	101271537	A->G	-	ENSG00000163162	RNF149	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	101823970	A->G	+	ENSG00000144815	NXPE3	protein_coding	three_prime_utr	.	.	Alu	0.181818
14	102036891	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.25
14	102036976	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.1875
14	102037222	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.125
7	102448755	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0408163
7	102448761	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.08
7	102448767	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0338983
7	102449586	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0416667
7	102449596	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.05
7	102449648	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0769231
7	102449860	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0540541
7	102449947	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.047619
7	102450004	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.114286
7	102450045	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0461538
7	102450050	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0588235
7	102450075	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0350877
7	102450951	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0689655
7	102450991	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0416667
7	102451036	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0697674
7	102451064	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0571429
7	102451080	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.113208
7	102451081	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0363636
10	102863124	A->G	+	ENSG00000166275	BORCS7	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	103335826	A->G	-	ENSG00000105821	DNAJC2	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	103335942	A->G	-	ENSG00000105821	DNAJC2	protein_coding	three_prime_utr	.	.	Alu	0.142857
6	106666052	A->G	+	ENSG00000130348	QRSL1	protein_coding	three_prime_utr	.	.	Alu	0.0689655
11	108231519	A->G	+	ENSG00000149311	ATM	protein_coding	three_prime_utr	.	.	Alu	0.4
11	108231520	A->G	+	ENSG00000149311	ATM	protein_coding	three_prime_utr	.	.	Alu	0.4
11	108365908	A->G	+	ENSG00000149311	ATM	protein_coding	three_prime_utr	.	.	Alu	0.166667
4	109689081	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.0571429
4	109689108	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.0714286
6	111271131	A->G	+	ENSG00000173214	MFSD4B	protein_coding	three_prime_utr	.	.	Alu	0.2
9	112685199	A->G	-	ENSG00000148153	INIP	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	119538678	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.2
X	119538708	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.5
X	119538709	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.6875
X	119539273	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.133333
X	119539275	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.357143
X	119539287	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.6
X	119539288	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.142857
X	119539306	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.363636
X	120437994	A->G	-	ENSG00000005893	LAMP2	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	123411180	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.6
12	123411181	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.454545
12	123411236	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	123411277	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.545455
12	123411476	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.466667
12	123411593	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.230769
12	123411605	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.136364
12	123411625	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.12
12	123411796	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.2
12	123412177	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.2
12	123412196	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	123412239	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.636364
12	123412280	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.210526
12	123412306	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	123412337	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.25
12	123412340	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	123412349	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.153846
12	123412414	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.2
12	123413113	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.5
12	123413114	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.363636
12	123661520	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.108108
12	123661530	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0555556
12	123661547	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0606061
12	123661548	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.485714
12	123661768	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.133333
12	123661770	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.05
12	123661809	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.03125
12	123661824	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0519481
12	123661825	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.025974
12	123661849	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.12
12	123661870	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0757576
12	123661874	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.031746
12	123662050	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.190476
X	123910682	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.230769
X	123910708	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.1
X	123910747	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.153846
X	123912456	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.142857
X	123912457	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.142857
X	123912479	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.133333
X	123912488	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	1
X	123912514	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.0952381
12	125029327	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	125029332	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.111111
12	125029452	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.05
12	125029464	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.0540541
12	125029466	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.0571429
12	125029478	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.0769231
11	125656230	A->G	+	ENSG00000149554	CHEK1	protein_coding	three_prime_utr	.	.	Alu	0.181818
11	125675961	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.318182
11	125675988	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.148148
11	125676008	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.142857
11	125676034	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.130435
5	126625741	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.2
5	126625771	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.4
5	126625776	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.166667
5	126625840	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.636364
5	126625842	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.5
5	126625856	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.25
5	126625862	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.384615
5	126625931	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.2
5	126626338	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.125
5	126626387	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.2
5	126626483	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.291667
5	126626484	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	127843890	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.5
2	127845461	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.2
2	127845504	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	127845513	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.363636
2	127845514	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.2
4	128036907	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	128036916	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.153846
4	128036930	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	128036972	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.166667
4	128037228	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.25
2	128192901	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.047619
2	128192915	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.0444444
2	128192917	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.555556
2	128192923	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.886364
2	128192924	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.431818
2	128192941	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.116279
2	128192968	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.789474
2	128192974	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.473684
2	128192991	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.3
2	128193122	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.3
2	128193132	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.666667
2	128193272	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.285714
2	128193283	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	128193316	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.6
2	128193326	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	128193351	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	128193352	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.5
2	128193356	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	128193381	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.916667
2	128193391	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.8
2	128193418	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	1
2	128193426	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.529412
2	128193432	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.222222
2	128193435	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.222222
2	128193452	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.323529
2	128193465	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.15
2	128193471	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.0487805
2	128193506	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.587302
2	128193520	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.177419
2	128193521	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.370968
2	128193533	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.469388
9	128305815	A->G	-	ENSG00000167112	TRUB2	protein_coding	three_prime_utr	.	.	Alu	0.2
9	128309254	A->G	-	ENSG00000167112	TRUB2	protein_coding	three_prime_utr	.	.	Alu	0.16
7	128505148	A->G	+	ENSG00000165055	METTL2B	protein_coding	three_prime_utr	.	.	Alu	0.333333
7	128505153	A->G	+	ENSG00000165055	METTL2B	protein_coding	three_prime_utr	.	.	Alu	0.166667
5	131201055	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.166667
5	131201061	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.375
5	131201062	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.411765
5	131201104	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.3
5	131201137	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.157895
5	131201149	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.0909091
5	131201152	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.0952381
5	131201153	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.0952381
5	131201193	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.227273
5	131201199	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.142857
5	131201453	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.263158
5	131201461	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.3
5	131201462	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.333333
5	131201527	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.181818
5	131201598	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.210526
5	131201599	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.789474
5	131201647	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.2
5	131201694	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.4
5	132482167	A->G	-	ENSG00000125347	IRF1	protein_coding	three_prime_utr	.	.	Alu	0.0408163
12	132721318	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.611111
12	132721348	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0833333
12	132721370	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.4
12	132721388	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.304348
12	132721433	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.12
12	132721467	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0909091
12	132721471	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.130435
12	132721473	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.08
12	132721509	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.25
12	132721535	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.3125
12	132721668	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.294118
12	132721669	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.263158
12	132721689	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	132721831	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.454545
12	132721837	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.416667
12	132721879	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.142857
12	132722416	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0869565
12	132722472	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.270833
3	141947445	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0526316
3	141947482	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.115385
3	141947553	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	141947579	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.08
3	141947582	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.125
3	141947583	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.12
3	141947588	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.142857
3	141949870	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	141949872	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.222222
3	141949877	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.263158
3	141949916	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.266667
3	141949978	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.190476
3	141949986	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.125
3	141949989	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.611111
3	141950026	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.428571
3	141950034	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.45
3	141950039	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.4
3	141950079	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.222222
3	141950080	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.206897
3	141950096	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.666667
1	145921994	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.153846
1	145921998	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.333333
1	145922061	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.166667
1	145922075	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.454545
1	145922076	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.3
1	145922100	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.166667
1	145922141	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.7
1	145922162	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.454545
6	149591171	A->G	+	ENSG00000055211	GINM1	protein_coding	three_prime_utr	.	.	Alu	0.230769
6	149724782	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.4
6	149724783	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.272727
6	149724784	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.272727
6	149724792	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.4
6	149724815	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.642857
6	149724821	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.117647
6	149724861	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.285714
6	149724862	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.642857
1	150308716	A->G	+	ENSG00000266472	MRPS21	protein_coding	three_prime_utr	.	.	Alu	0.3
1	150731276	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.7
1	150731311	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.25
1	150732736	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0851064
1	150732767	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0571429
1	150732772	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.128205
1	150732797	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0425532
1	150732802	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0888889
1	150732810	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0612245
1	150732829	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0857143
1	151123394	A->G	+	ENSG00000143458	GABPB2	protein_coding	three_prime_utr	.	.	Alu	0.4
1	151123420	A->G	+	ENSG00000143458	GABPB2	protein_coding	three_prime_utr	.	.	Alu	0.2
X	154011217	A->G	-	ENSG00000184216	IRAK1	protein_coding	three_prime_utr	.	.	Alu	0.0333333
6	154396964	A->G	-	ENSG00000153721	CNKSR3	protein_coding	three_prime_utr	.	.	Alu	0.25
3	156540484	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.947368
3	156540494	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.764706
3	156540506	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.363636
3	156540519	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.5625
3	156540530	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.785714
3	156541499	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.155556
3	156541506	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.208333
3	156541551	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.193548
3	156541552	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	156541574	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.193548
3	156541578	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.129032
3	156541617	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.512821
3	156541618	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.538462
1	156722886	A->G	-	ENSG00000143319	ISG20L2	protein_coding	three_prime_utr	.	.	Alu	1
7	156970054	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.545455
7	156970068	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	156970078	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.181818
5	157740793	A->G	+	ENSG00000113272	THG1L	protein_coding	three_prime_utr	.	.	Alu	0.272727
4	158709347	A->G	-	ENSG00000171503	ETFDH	protein_coding	three_prime_utr	.	.	Alu	0.0769231
6	159679813	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0333333
6	159679849	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0350877
6	159679850	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.107143
6	159679878	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.119048
6	159680701	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.210526
1	160996561	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.473684
1	160996562	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.4
1	160996563	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.263158
1	160996603	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	160996644	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.833333
1	160998026	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.266667
1	160998027	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	160998043	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.307692
1	160998066	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.2
1	160998067	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.2
1	160998109	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	160998148	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.133333
4	165075134	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.333333
4	165075135	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.538462
4	165075136	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.5
4	165075137	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.357143
4	165075163	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.166667
4	165075533	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.75
4	176331637	A->G	+	ENSG00000129128	SPCS3	protein_coding	three_prime_utr	.	.	Alu	0.0344828
2	177227889	A->G	+	ENSG00000116044	NFE2L2	protein_coding	three_prime_utr	.	.	Alu	0.15
1	179101512	A->G	-	ENSG00000143322	ABL2	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	179399245	A->G	-	ENSG00000114450	GNB4	protein_coding	three_prime_utr	.	.	Alu	0.125
3	179399314	A->G	-	ENSG00000114450	GNB4	protein_coding	three_prime_utr	.	.	Alu	0.230769
3	179399340	A->G	-	ENSG00000114450	GNB4	protein_coding	three_prime_utr	.	.	Alu	0.272727
3	183491274	A->G	-	ENSG00000172578	KLHL6	protein_coding	three_prime_utr	.	.	Alu	0.307692
3	183672819	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	185292158	A->G	+	ENSG00000073803	MAP3K13	protein_coding	three_prime_utr	.	.	Alu	0.0571429
3	188883665	A->G	+	ENSG00000145012	LPP	protein_coding	three_prime_utr	.	.	Alu	0.2
3	196352735	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	196352737	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.363636
3	196352750	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.454545
3	196353660	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.1
3	196353682	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.102564
3	196353688	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.047619
3	196353694	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.0465116
3	196353729	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.40625
3	196353753	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.395349
3	196353754	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.0697674
3	196353759	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.186047
3	196734363	A->G	+	ENSG00000163964	PIGX	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	196734412	A->G	+	ENSG00000163964	PIGX	protein_coding	three_prime_utr	.	.	Alu	0.0555556
3	196735156	A->G	+	ENSG00000163964	PIGX	protein_coding	three_prime_utr	.	.	Alu	0.1
2	200977600	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.7
2	200978506	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.1875
2	200978572	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.533333
2	200978573	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.125
2	200978587	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.266667
2	200978741	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.428571
2	200978747	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.785714
2	200978748	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.8125
2	203297791	A->G	+	ENSG00000119004	CYP20A1	protein_coding	three_prime_utr	.	.	Alu	0.2
2	203297807	A->G	+	ENSG00000119004	CYP20A1	protein_coding	three_prime_utr	.	.	Alu	0.2
2	206122217	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	0.25
2	206122221	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	0.266667
2	206122225	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	206122372	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	0.25
2	206122504	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	1
2	206122529	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	0.416667
2	206122546	A->G	-	ENSG00000023228	NDUFS1	protein_coding	three_prime_utr	.	.	Alu	0.866667
2	207612372	A->G	-	ENSG00000144401	METTL21A	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	207612373	A->G	-	ENSG00000144401	METTL21A	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	216501776	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.243902
2	216501792	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.465517
2	216501798	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0588235
2	216501804	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0344828
2	216501811	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0862069
2	216501817	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.107143
2	216501818	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.403509
2	216501847	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0697674
2	216501857	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.789474
2	216501867	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.296875
2	216501875	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.186047
2	216501892	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.04
2	216501901	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0666667
2	216501903	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.113636
2	216501921	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.075
2	216501951	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0606061
2	216501976	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.375
2	216501990	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.823529
2	216502063	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	216502070	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.09375
2	216502071	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.15625
2	216502080	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.119048
2	216502098	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0769231
2	216502143	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.116279
2	216502145	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.292683
2	216502162	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0810811
2	216502174	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.5
2	216502175	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.258065
2	216502196	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.194444
2	216502198	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.529412
2	216502206	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	216502207	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.135135
2	216502216	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.129032
2	216502235	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0681818
2	216502236	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.108696
2	216502242	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.145455
2	216502248	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0862069
1	220057921	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.727273
1	228180035	A->G	+	ENSG00000181873	IBA57	protein_coding	three_prime_utr	.	.	Alu	0.272727
1	228180036	A->G	+	ENSG00000181873	IBA57	protein_coding	three_prime_utr	.	.	Alu	0.5
2	233205624	A->G	+	ENSG00000168918	INPP5D	protein_coding	three_prime_utr	.	.	Alu	0.0740741