Chr	Position	Editing	Strand	Ensembl_ID	Gene_name	Gene_type	Genomic_region	AA_change	Amino_Acid	Repeat	AN73_LZ
4	2938299	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.383333
4	2938304	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.Gln->Arg	Alu	0.0923077
19	8492024	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	upstream_gene_variant	.	Alu	0.636364
10	12456631	A->G	+	ENSG00000252118	RNU6ATAC39P	snRNA	Intron	splice_region_variant&non_coding_transcript_exon_variant	.	Alu	0.4375
19	18071320	A->G	-	ENSG00000096996	IL12RB1	protein_coding	CDS	synonymous_variant	p.Ser->Ser	Alu	0.285714
22	19441673	A->G	-	ENSG00000100084	HIRA	protein_coding	CDS	missense_variant	p.Thr->Ala	Alu	0.0512821
3	69076412	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	synonymous_variant	p.Thr->Thr	Alu	0.357143
3	69076414	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Thr->Ala	Alu	0.2
3	69076424	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	synonymous_variant	p.Val->Val	Alu	0.157895
3	69076453	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Ser->Gly	Alu	0.222222
3	69076473	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.133333
3	69076497	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.117647
3	69076502	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	synonymous_variant	p.Glu->Glu	Alu	0.125
X	154011115	A->G	-	ENSG00000184216	IRAK1	protein_coding	CDS	missense_variant&splice_region_variant	p.Gln->Arg	Alu	0.0769231
1	225786910	A->G	+	ENSG00000143742	SRP9	protein_coding	CDS	missense_variant	p.Ile->Val	Alu	0.2
1	225786912	A->G	+	ENSG00000143742	SRP9	protein_coding	CDS	missense_variant	p.Ile->Met	Alu	0.5
1	225786943	A->G	+	ENSG00000143742	SRP9	protein_coding	CDS	missense_variant	p.Ser->Gly	Alu	0.272727
19	2291932	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.2
19	2292005	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.235294
3	9987037	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.0434783
3	9987093	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.0704225
19	11865960	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.0714286
19	11865967	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.192308
21	37410602	A->G	+	ENSG00000157540	DYRK1A	protein_coding	five_prime_utr	.	.	Alu	0.166667
21	37410605	A->G	+	ENSG00000157540	DYRK1A	protein_coding	five_prime_utr	.	.	Alu	0.307692
21	37410607	A->G	+	ENSG00000157540	DYRK1A	protein_coding	five_prime_utr	.	.	Alu	0.142857
21	37410631	A->G	+	ENSG00000157540	DYRK1A	protein_coding	five_prime_utr	.	.	Alu	0.227273
21	37410645	A->G	+	ENSG00000157540	DYRK1A	protein_coding	five_prime_utr	.	.	Alu	0.210526
21	37410657	A->G	+	ENSG00000157540	DYRK1A	protein_coding	five_prime_utr	.	.	Alu	0.08
8	38463157	A->G	-	ENSG00000077782	FGFR1	protein_coding	five_prime_utr	.	.	Alu	0.214286
7	66740101	A->G	-	ENSG00000284461	AC027644.4	protein_coding	five_prime_utr	.	.	Alu	0.111111
10	72220134	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.125
10	72220165	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.1
10	72220179	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.0810811
10	72220182	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.0555556
10	72220248	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.156863
10	72220261	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.142857
16	192593	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.133333
16	192601	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.25
16	192667	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.181818
16	192682	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.25
16	192775	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.3
16	192776	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.3
16	221093	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.470588
9	277209	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.166667
9	277237	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.636364
9	277385	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.105263
9	277387	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.142857
9	277404	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.0769231
9	277407	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.111111
5	278657	A->G	+	ENSG00000249915	PDCD6	protein_coding	Intergenic	.	.	Alu	0.636364
12	306110	A->G	-	ENSG00000073614	KDM5A	protein_coding	Intergenic	.	.	Alu	0.230769
12	306118	A->G	-	ENSG00000073614	KDM5A	protein_coding	Intergenic	.	.	Alu	0.461538
12	306136	A->G	-	ENSG00000073614	KDM5A	protein_coding	Intergenic	.	.	Alu	0.166667
17	398800	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
17	398801	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
17	399238	A->G	-	.	.	.	Intergenic	.	.	Alu	0.631579
17	399241	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
17	399272	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
17	400428	A->G	-	.	.	.	Intergenic	.	.	Alu	0.315789
17	400429	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
17	400449	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
17	400825	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
17	400830	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
16	587945	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
18	684027	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.214286
18	684029	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.307692
18	684132	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.75
18	685110	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.181818
19	688413	A->G	-	ENSG00000185198	PRSS57	protein_coding	Intergenic	.	.	Alu	0.142857
19	688430	A->G	-	ENSG00000185198	PRSS57	protein_coding	Intergenic	.	.	Alu	0.125
19	688872	A->G	-	ENSG00000185198	PRSS57	protein_coding	Intergenic	.	.	Alu	0.545455
18	696483	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.214286
18	697494	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.166667
18	697507	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.166667
18	697627	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.181818
18	697841	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.666667
18	697842	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.4
18	698045	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.272727
12	757871	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.2
12	757914	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.133333
12	757915	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.266667
11	761394	A->G	+	ENSG00000177156	TALDO1	protein_coding	Intergenic	.	.	Alu	0.6
12	764460	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.214286
12	764480	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.08
12	764489	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.0833333
12	764513	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.538462
12	764515	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.333333
12	764525	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.15
12	764588	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.1
12	764591	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.0769231
12	764919	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.25
12	764939	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.230769
12	783522	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.2
18	787176	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.105263
18	787197	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.185185
18	787232	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.145833
18	787238	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.0930233
18	787264	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.535714
18	787268	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.0967742
18	787279	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.0666667
18	787282	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.1
18	787561	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.105263
18	787562	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.111111
18	787566	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.235294
18	787582	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.148148
18	787598	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.136364
18	787628	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.421053
18	787629	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.333333
18	787634	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.3
19	863649	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
19	863655	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
12	923848	A->G	+	ENSG00000002016	RAD52	protein_coding	Intergenic	.	.	Alu	0.2
11	927666	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.1875
11	927667	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.125
11	927688	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.375
11	927752	A->G	+	ENSG00000183020	AP2A2	protein_coding	Intergenic	.	.	Alu	0.5
7	970073	A->G	-	ENSG00000240230	COX19	protein_coding	Intergenic	.	.	Alu	0.130435
16	1322879	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.1875
X	1356689	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1357081	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.125
X	1357090	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.333333
X	1357226	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1357227	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1357233	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.545455
X	1357377	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1360656	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.133333
X	1361489	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.15
X	1361508	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.142857
X	1361570	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.25
X	1361631	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1362908	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.272727
X	1362976	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.230769
X	1363003	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.294118
X	1363018	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.272727
X	1363048	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.214286
X	1363049	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.142857
X	1363336	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.363636
X	1363425	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.133333
X	1363429	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.133333
X	1363465	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.619048
X	1363470	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.105263
X	1363538	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
X	1363539	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.357143
X	1363805	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.35
X	1363812	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.3125
X	1363817	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.117647
X	1363926	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.3
X	1364235	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1364266	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1364563	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.375
X	1364673	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.133333
X	1364674	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.333333
X	1364677	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.26087
X	1364869	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.533333
X	1364885	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.416667
X	1365104	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
X	1382837	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
X	1382863	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
X	1382880	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
X	1382889	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1382890	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
X	1382900	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
X	1382919	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
X	1382959	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
X	1383064	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383097	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
X	1383104	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
X	1383109	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
X	1383123	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383135	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
X	1383160	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
X	1383190	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383206	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
X	1383214	A->G	-	.	.	.	Intergenic	.	.	Alu	0.294118
X	1383215	A->G	-	.	.	.	Intergenic	.	.	Alu	0.176471
X	1383224	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
X	1383237	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383358	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
X	1383364	A->G	-	.	.	.	Intergenic	.	.	Alu	0.461538
X	1383390	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
X	1383408	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0869565
X	1383415	A->G	-	.	.	.	Intergenic	.	.	Alu	0.352941
X	1383451	A->G	-	.	.	.	Intergenic	.	.	Alu	0.238095
X	1383460	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
X	1383461	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
X	1383467	A->G	-	.	.	.	Intergenic	.	.	Alu	0.15
X	1383483	A->G	-	.	.	.	Intergenic	.	.	Alu	0.315789
X	1383515	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383524	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4375
X	1383525	A->G	-	.	.	.	Intergenic	.	.	Alu	0.352941
X	1383567	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
X	1383585	A->G	-	.	.	.	Intergenic	.	.	Alu	0.08
X	1383593	A->G	-	.	.	.	Intergenic	.	.	Alu	0.136364
X	1383594	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
X	1383794	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
X	1383795	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
X	1383919	A->G	-	.	.	.	Intergenic	.	.	Alu	0.636364
X	1383929	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
X	1384034	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
X	1384038	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
X	1385218	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
X	1385222	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
X	1385224	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
17	1388011	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.142857
17	1388022	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.133333
17	1388063	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.176471
17	1388166	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.416667
17	1388167	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.461538
17	1388203	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.214286
17	1388394	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.230769
17	1388662	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.111111
17	1389981	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0952381
1	1396676	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.125
1	1396717	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.466667
X	1398052	A->G	+	ENSG00000236871	LINC00106	lincRNA	Intergenic	.	.	Alu	0.2
17	1447669	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.181818
17	1447732	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.3
17	1447733	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.666667
17	1549178	A->G	-	ENSG00000174238	PITPNA	protein_coding	Intergenic	.	.	Alu	0.105263
16	1653954	A->G	+	ENSG00000007545	CRAMP1	protein_coding	Intergenic	.	.	Alu	0.9
4	1694204	A->G	-	ENSG00000163950	SLBP	protein_coding	Intergenic	.	.	Alu	0.166667
1	1838583	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
6	1846221	A->G	-	ENSG00000112699	GMDS	protein_coding	Intergenic	.	.	Alu	0.2
1	1862559	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	1871343	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	1871371	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.235294
1	1871419	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.590909
1	1871446	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.176471
1	1872107	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1872153	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.357143
1	1872166	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	1872176	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.25
1	1872220	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.384615
1	1883992	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0666667
1	1884103	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.125
1	1884199	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.26087
1	1884260	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1884283	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	1884349	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.157895
1	1884350	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.3
1	1885695	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.181818
17	2038061	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.5
17	2038111	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.153846
17	2038245	A->G	+	ENSG00000108963	DPH1	protein_coding	Intergenic	.	.	Alu	0.857143
19	2096017	A->G	-	ENSG00000172081	MOB3A	protein_coding	Intergenic	.	.	Alu	0.181818
16	2259700	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.272727
16	2260190	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.285714
16	2260218	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.105263
16	2260228	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.1
16	2260241	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.238095
16	2260248	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.304348
16	2260252	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.190476
16	2260253	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.0869565
16	2260320	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.153846
16	2260333	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.15
16	2260337	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.315789
16	2260338	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.578947
16	2260369	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.0769231
19	2284423	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.277778
19	2284853	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.357143
19	2292073	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.130435
19	2292077	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.142857
19	2292081	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.333333
19	2292090	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0833333
19	2292094	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.1
19	2292113	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.363636
19	2292318	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.230769
19	2292323	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.153846
19	2292343	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.214286
19	2292350	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.166667
6	2294443	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.727273
6	2294448	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.5
6	2294458	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.384615
6	2294470	A->G	+	ENSG00000250903	GMDS-DT	lincRNA	Intergenic	.	.	Alu	0.272727
4	2474267	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.125
4	2493526	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.125
4	2493565	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.428571
4	2493582	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.125
4	2493624	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.285714
4	2500011	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
4	2500037	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
4	2502882	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.421053
4	2502899	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0869565
4	2502930	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.65
4	2502963	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.266667
4	2502968	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
4	2540924	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.4
4	2543686	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.125
4	2543692	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.1875
4	2543738	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2543751	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.4
4	2558072	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.153846
4	2558151	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0952381
4	2558152	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.333333
4	2558175	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.111111
17	2611321	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.166667
17	2650405	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.153846
18	2662412	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.0769231
18	2662524	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.135135
18	2662597	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.1
17	2672209	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.3
17	2672241	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	1
18	2702199	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.181818
X	2707075	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.333333
X	2707096	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.2
X	2707227	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.153846
X	2707236	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.153846
X	2707250	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.142857
X	2724505	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.3
X	2724974	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.0666667
X	2724983	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.130435
X	2725318	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.263158
X	2725323	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.272727
X	2730771	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.105263
X	2730776	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.277778
X	2730820	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.15
X	2735948	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.166667
X	2744183	A->G	+	.	.	.	Intergenic	.	.	Alu	0.352941
X	2744186	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
X	2744215	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
X	2744227	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
X	2744255	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
X	2744278	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
X	2744279	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
X	2744287	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
X	2744736	A->G	+	.	.	.	Intergenic	.	.	Alu	0.378378
X	2744737	A->G	+	.	.	.	Intergenic	.	.	Alu	0.457143
X	2744742	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	2744772	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
X	2744773	A->G	+	.	.	.	Intergenic	.	.	Alu	0.103448
X	2744780	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
X	2744794	A->G	+	.	.	.	Intergenic	.	.	Alu	0.173913
X	2744804	A->G	+	.	.	.	Intergenic	.	.	Alu	0.157895
X	2744812	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
X	2744813	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
X	2744870	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0625
X	2744880	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
X	2744893	A->G	+	.	.	.	Intergenic	.	.	Alu	0.157895
X	2744943	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
7	2756910	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.133333
7	2756911	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.111111
7	2756946	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.2
7	2756955	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.111111
7	2756956	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.235294
7	2756979	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.153846
7	2757012	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.0526316
7	2757017	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.047619
7	2757027	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.230769
7	2757028	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.75
7	2757069	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.837209
7	2757071	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.0487805
7	2757299	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.2
7	2757314	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.25
7	2757315	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.333333
7	2757318	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.375
18	2797874	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.230769
12	2840191	A->G	+	ENSG00000111203	ITFG2	protein_coding	Intergenic	.	.	Alu	0.2
12	2840401	A->G	+	ENSG00000111203	ITFG2	protein_coding	Intergenic	.	.	Alu	0.2
4	2846951	A->G	+	ENSG00000087274	ADD1	protein_coding	Intergenic	.	.	Alu	0.333333
4	2846954	A->G	+	ENSG00000087274	ADD1	protein_coding	Intergenic	.	.	Alu	0.25
12	2883351	A->G	+	ENSG00000171792	RHNO1	protein_coding	Intergenic	.	.	Alu	0.181818
20	2886735	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.0909091
20	2886736	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.136364
20	2892211	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.25
20	2892240	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.125
16	2939645	A->G	-	ENSG00000059122	FLYWCH1	protein_coding	Intergenic	.	.	Alu	0.166667
16	2939650	A->G	-	ENSG00000059122	FLYWCH1	protein_coding	Intergenic	.	.	Alu	0.2
4	3140154	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.117647
19	3181274	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
19	3181394	A->G	+	.	.	.	Intergenic	.	.	Alu	0.233333
19	3181462	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16
19	3182378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
19	3182404	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
19	3182445	A->G	+	.	.	.	Intergenic	.	.	Alu	0.235294
19	3182446	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3125
19	3182802	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
19	3182837	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
19	3182863	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3183724	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
4	3190130	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.4
9	3424541	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.142857
9	3424544	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.133333
9	3424565	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.615385
9	3424566	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.538462
16	3462031	A->G	+	ENSG00000122390	NAA60	protein_coding	Intergenic	.	.	Alu	0.272727
9	3470375	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.2
9	3470382	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.105263
19	3484161	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
2	3541908	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.181818
2	3541909	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.166667
2	3541935	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.153846
2	3541961	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.363636
2	3541981	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.142857
2	3541987	A->G	-	ENSG00000255767	AC108488.2	protein_coding	Intergenic	.	.	Alu	0.214286
11	3701328	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.1
11	3701814	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.421053
11	3701818	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.26087
11	3701822	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.181818
11	3701824	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.545455
11	3702116	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.272727
11	3722340	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.181818
11	3782655	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.166667
11	3782680	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.142857
11	3782681	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.142857
11	3782699	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.285714
11	3782707	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.181818
11	3789608	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.272727
11	3789618	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.153846
11	3789632	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.166667
16	3790622	A->G	-	ENSG00000005339	CREBBP	protein_coding	Intergenic	.	.	Alu	0.272727
16	3790638	A->G	-	ENSG00000005339	CREBBP	protein_coding	Intergenic	.	.	Alu	0.214286
16	3802229	A->G	-	ENSG00000005339	CREBBP	protein_coding	Intergenic	.	.	Alu	0.285714
16	3802243	A->G	-	ENSG00000005339	CREBBP	protein_coding	Intergenic	.	.	Alu	0.181818
20	3887543	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
17	3911043	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0869565
17	3911206	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0869565
17	3911207	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.173913
17	3911260	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.115385
17	3911276	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.347826
20	3912696	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.0952381
20	3912702	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.136364
20	3912703	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.478261
20	3912711	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.0909091
20	3912768	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.214286
20	3912794	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.210526
20	3912829	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.269231
20	3912856	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.178571
20	3912865	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.535714
20	3912906	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.1875
17	3934795	A->G	-	ENSG00000074370	ATP2A3	protein_coding	Intergenic	.	.	Alu	0.461538
17	3934796	A->G	-	ENSG00000074370	ATP2A3	protein_coding	Intergenic	.	.	Alu	0.769231
20	3954028	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.3
20	3981573	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.142857
20	3981617	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.833333
20	3981634	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.1875
20	3981644	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.705882
20	3985906	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.117647
20	3986372	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.133333
20	3986390	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.166667
20	3986507	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.166667
20	3986538	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.117647
20	3986787	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.230769
20	3991372	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.545455
20	4003241	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.2
6	4036805	A->G	+	ENSG00000112739	PRPF4B	protein_coding	Intergenic	.	.	Alu	0.909091
11	4097029	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.166667
11	4097030	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.153846
11	4097134	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.272727
11	4097166	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.2
11	4114350	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.181818
11	4114351	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.363636
17	4287273	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.181818
17	4287277	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.4
17	4339357	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.272727
17	4339381	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.3
17	4339443	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.692308
17	4339522	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.214286
17	4339537	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.125
17	4339648	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
17	4346531	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.133333
17	4346546	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.190476
17	4346612	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.25
17	4346613	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.25
17	4347571	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
17	4347572	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.25
17	4347613	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.111111
17	4347639	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.125
16	4348833	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.333333
16	4348935	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.5
16	4349227	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.636364
16	4349228	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.181818
16	4349234	A->G	-	ENSG00000217930	PAM16	protein_coding	Intergenic	.	.	Alu	0.909091
17	4353962	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
16	4816370	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.166667
16	4816803	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.2
16	4816838	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.2
16	4817029	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.307692
16	4817068	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.642857
16	4817082	A->G	-	ENSG00000140632	GLYR1	protein_coding	Intergenic	.	.	Alu	0.4
16	4848986	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.461538
16	4849007	A->G	+	ENSG00000118900	UBN1	protein_coding	Intergenic	.	.	Alu	0.176471
19	4949020	A->G	+	ENSG00000276043	UHRF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	5127722	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0810811
3	5127723	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.166667
3	5127726	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0526316
3	5127752	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.297297
3	5127762	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.107143
3	5127793	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.192308
3	5127823	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.133333
3	5127919	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0952381
3	5127934	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0769231
3	5128010	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0540541
3	5128011	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0555556
3	5128012	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0833333
3	5128075	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0769231
3	5128114	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.153846
3	5159445	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.153846
3	5159450	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.125
3	5159481	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0833333
3	5159482	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.166667
3	5159508	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.15
3	5159552	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.166667
7	5196850	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.125
7	5196902	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.153846
7	5196961	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0625
7	5196991	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0645161
7	5196992	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.28125
7	5196997	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.111111
7	5197005	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.175
7	5197033	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.195122
7	5197037	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0810811
7	5197057	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0625
7	5197061	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0909091
7	5197094	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.352941
7	5325622	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.5
17	5344907	A->G	+	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.25
17	5398178	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.133333
7	5398363	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5398364	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5398373	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.153846
7	5398374	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.230769
7	5398442	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5398451	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.3
7	5398746	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.25
7	5398782	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5398827	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
17	5399021	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.0740741
17	5399027	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.192308
17	5399086	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.137931
17	5399096	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.0689655
17	5399164	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.09375
7	5414545	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.272727
7	5414551	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.25
7	5415444	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5415510	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.470588
7	5415515	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.529412
7	5415516	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.352941
20	5563164	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.133333
7	5611235	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
9	5701466	A->G	+	ENSG00000107036	RIC1	protein_coding	Intergenic	.	.	Alu	0.2
7	5742733	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.133333
7	5742736	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.538462
19	6008465	A->G	-	ENSG00000087903	RFX2	protein_coding	Intergenic	.	.	Alu	0.166667
19	6046974	A->G	-	ENSG00000087903	RFX2	protein_coding	Intergenic	.	.	Alu	0.5
7	6135390	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.2
7	6135392	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.181818
7	6135530	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.266667
10	6153625	A->G	+	ENSG00000170525	PFKFB3	protein_coding	Intergenic	.	.	Alu	0.3
7	6246143	A->G	-	ENSG00000008256	CYTH3	protein_coding	Intergenic	.	.	Alu	0.2
7	6246172	A->G	-	ENSG00000008256	CYTH3	protein_coding	Intergenic	.	.	Alu	0.545455
7	6246173	A->G	-	ENSG00000008256	CYTH3	protein_coding	Intergenic	.	.	Alu	0.461538
7	6386664	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.133333
7	6396767	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.111111
7	6396915	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.153846
7	6397120	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.533333
7	6397398	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.181818
7	6397411	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.3
7	6397423	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.2
7	6397524	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.0833333
7	6397554	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.08
7	6397750	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.15
7	6397779	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.133333
7	6397823	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.142857
7	6397826	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.214286
7	6397973	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.181818
9	6487986	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.2
9	6488054	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.181818
9	6488062	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.181818
9	6488093	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.133333
9	6488096	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.333333
1	6548220	A->G	-	ENSG00000162408	NOL9	protein_coding	Intergenic	.	.	Alu	0.7
1	6844417	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.277778
1	6844418	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.388889
1	6844448	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.166667
1	6844462	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.2
1	6844470	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.3
1	6844549	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.380952
1	6844565	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.0666667
1	6849914	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.272727
1	6849915	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.272727
19	7072023	A->G	+	ENSG00000130544	ZNF557	protein_coding	Intergenic	.	.	Alu	0.2
6	7173595	A->G	+	ENSG00000124782	RREB1	protein_coding	Intergenic	.	.	Alu	0.545455
6	7173596	A->G	+	ENSG00000124782	RREB1	protein_coding	Intergenic	.	.	Alu	0.363636
6	7219149	A->G	+	ENSG00000124782	RREB1	protein_coding	Intergenic	.	.	Alu	0.266667
19	7972681	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.3
19	7976887	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.307692
19	7976891	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.142857
19	7976925	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.285714
20	8229981	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.230769
1	8403929	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.133333
1	8403963	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.1875
1	8403968	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.5
1	8403995	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.388889
1	8403998	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.105263
1	8403999	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.105263
1	8404057	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	1
1	8404062	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.15
1	8404066	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8404079	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.111111
1	8404195	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.5
1	8404208	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.4
1	8404268	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.727273
1	8404269	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.636364
1	8404293	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.4
1	8404295	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.7
1	8404305	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.1
20	8436198	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.272727
19	8471985	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.117647
19	8472000	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.05
19	8472012	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.0540541
19	8472024	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.135135
19	8472060	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.0434783
19	8472077	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.0425532
19	8472092	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.09375
19	8477607	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.111111
19	8492028	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.1
19	8492060	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.111111
19	8493830	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.214286
19	8494705	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.545455
19	8495168	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.2
19	8495172	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.181818
20	8514319	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.0434783
1	8529366	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.263158
1	8529382	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.190476
1	8529444	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.272727
1	8545822	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.153846
1	8546128	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.333333
1	8574547	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.1
1	8574552	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.125
1	8582635	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.208333
1	8582638	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.208333
1	8582645	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.26087
1	8582708	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.15
1	8600924	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.181818
1	8600925	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.166667
1	8600959	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.333333
1	8601157	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.142857
1	8601211	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.230769
1	8607811	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.166667
18	8616814	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.259259
18	8616818	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.433333
18	8616831	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.193548
18	8616838	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0606061
18	8616844	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0967742
18	8616849	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.68
18	8616853	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.185185
18	8616877	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.181818
18	8616889	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.105263
18	8616911	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.290323
18	8616913	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.645161
1	8692548	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.3
12	8711221	A->G	+	ENSG00000166532	RIMKLB	protein_coding	Intergenic	.	.	Alu	0.272727
2	8746251	A->G	-	ENSG00000134313	KIDINS220	protein_coding	Intergenic	.	.	Alu	0.5
1	8813752	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.166667
1	8813753	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.25
20	8834721	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.166667
16	8896038	A->G	-	ENSG00000187555	USP7	protein_coding	Intergenic	.	.	Alu	0.166667
18	9156087	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.357143
18	9156088	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.357143
11	9172883	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1875
11	9194858	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1
11	9194864	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.15
11	9194880	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.111111
11	9194895	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.125
11	9230047	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.125
11	9230369	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.333333
11	9230381	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9230420	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.3
11	9230474	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0952381
11	9238943	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.269231
11	9238952	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0833333
11	9238969	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.347826
11	9239002	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.133333
11	9239605	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1875
11	9239621	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.166667
11	9257830	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.181818
11	9257930	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0666667
11	9257931	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0666667
11	9257933	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.111111
11	9257957	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.105263
11	9263313	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.307692
11	9263345	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.25
11	9263358	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.454545
11	9289173	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.1875
11	9289216	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.3125
11	9289276	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.6875
11	9303800	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.0952381
11	9303895	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.153846
11	9306116	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.2
18	9340181	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.25
18	9340202	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.333333
18	9340221	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.153846
18	9375020	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.230769
18	9375112	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.166667
18	9375119	A->G	+	ENSG00000128791	TWSG1	protein_coding	Intergenic	.	.	Alu	0.181818
11	9444786	A->G	+	ENSG00000205339	IPO7	protein_coding	Intergenic	.	.	Alu	0.25
2	9506469	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.210526
2	9506505	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.105263
2	9506531	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.5
2	9506593	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.166667
2	9506607	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.333333
19	9532421	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.478261
19	9532441	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.227273
19	9532461	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.125
19	9532465	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.210526
19	9532501	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.142857
2	9532537	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.272727
2	9532544	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.4
2	9532548	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.272727
2	9546802	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.153846
2	9597958	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.2
2	9607087	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.0769231
2	9607102	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.0714286
2	9607153	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.08
2	9607154	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.318182
2	9618787	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.2
8	9634923	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.0833333
8	9634988	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.133333
8	9635011	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.142857
8	9635049	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.230769
8	9635059	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.4
8	9635120	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.25
8	9635135	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.125
1	9669919	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.230769
1	9669942	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.333333
1	9696616	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.25
1	9705443	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.142857
1	9705463	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.157895
3	9801986	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.181818
1	9818037	A->G	-	ENSG00000171603	CLSTN1	protein_coding	Intergenic	.	.	Alu	0.166667
1	9927378	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.230769
1	9927412	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.176471
1	9927426	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.333333
1	9927466	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.181818
1	9927518	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.2
1	9927756	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.25
1	9927832	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.2
1	9927874	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.714286
1	9927893	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.25
1	9927894	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.466667
1	9927902	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.153846
1	9927907	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.153846
1	9927924	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.294118
1	9927932	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.111111
1	9927937	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.176471
1	9927945	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.222222
1	9927946	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.105263
1	9927962	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.1875
1	9928072	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.133333
1	9928080	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.25
1	9928089	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.75
3	9998836	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
1	10144519	A->G	+	ENSG00000130939	UBE4B	protein_coding	Intergenic	.	.	Alu	0.181818
3	10152222	A->G	+	.	.	.	Intergenic	.	.	Alu	0.346154
3	10152248	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	10152249	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0416667
3	10152258	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0454545
3	10152281	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0333333
3	10152290	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0422535
3	10152294	A->G	+	.	.	.	Intergenic	.	.	Alu	0.233766
3	10152310	A->G	+	.	.	.	Intergenic	.	.	Alu	0.135135
3	10152314	A->G	+	.	.	.	Intergenic	.	.	Alu	0.025974
3	10152321	A->G	+	.	.	.	Intergenic	.	.	Alu	0.223684
3	10152326	A->G	+	.	.	.	Intergenic	.	.	Alu	0.115942
3	10152356	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	10152557	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10152570	A->G	+	.	.	.	Intergenic	.	.	Alu	0.782609
3	10152573	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10152587	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
3	10152592	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
3	10152593	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	10152622	A->G	+	.	.	.	Intergenic	.	.	Alu	0.344828
3	10152632	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
3	10152645	A->G	+	.	.	.	Intergenic	.	.	Alu	0.137931
3	10152658	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
3	10152689	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
3	10152751	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
3	10152866	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
3	10152871	A->G	+	.	.	.	Intergenic	.	.	Alu	0.56
3	10152879	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
3	10152887	A->G	+	.	.	.	Intergenic	.	.	Alu	0.185185
3	10152888	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
3	10152909	A->G	+	.	.	.	Intergenic	.	.	Alu	0.136364
3	10152910	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
3	10152933	A->G	+	.	.	.	Intergenic	.	.	Alu	0.171429
3	10152942	A->G	+	.	.	.	Intergenic	.	.	Alu	0.131579
3	10152957	A->G	+	.	.	.	Intergenic	.	.	Alu	0.131579
3	10152966	A->G	+	.	.	.	Intergenic	.	.	Alu	0.131579
3	10152967	A->G	+	.	.	.	Intergenic	.	.	Alu	0.131579
3	10152978	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0689655
3	10153021	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0857143
3	10153022	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
3	10153044	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0512821
3	10153060	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0465116
3	10153069	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0535714
3	10153089	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0526316
3	10153100	A->G	+	.	.	.	Intergenic	.	.	Alu	0.145161
3	10153127	A->G	+	.	.	.	Intergenic	.	.	Alu	0.12069
3	10153128	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0491803
3	10153131	A->G	+	.	.	.	Intergenic	.	.	Alu	0.174603
3	10153157	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16129
3	10153167	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0864198
3	10153198	A->G	+	.	.	.	Intergenic	.	.	Alu	0.137931
3	10153199	A->G	+	.	.	.	Intergenic	.	.	Alu	0.130952
3	10153206	A->G	+	.	.	.	Intergenic	.	.	Alu	0.447368
3	10153219	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0746269
3	10153223	A->G	+	.	.	.	Intergenic	.	.	Alu	0.030303
3	10153249	A->G	+	.	.	.	Intergenic	.	.	Alu	0.262295
3	10153260	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
3	10153266	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0434783
3	10153295	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0350877
3	10153298	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0615385
3	10153299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.196721
3	10153300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.266667
3	10153301	A->G	+	.	.	.	Intergenic	.	.	Alu	0.12069
3	10153304	A->G	+	.	.	.	Intergenic	.	.	Alu	0.137931
3	10153349	A->G	+	.	.	.	Intergenic	.	.	Alu	0.173077
3	10153350	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0740741
3	10153370	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0465116
3	10153374	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
3	10153378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.323529
3	10153379	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0857143
3	10153381	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0571429
3	10153384	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10153386	A->G	+	.	.	.	Intergenic	.	.	Alu	0.172414
3	10153408	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0731707
3	10153411	A->G	+	.	.	.	Intergenic	.	.	Alu	0.175
3	10153412	A->G	+	.	.	.	Intergenic	.	.	Alu	1
3	10153414	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0487805
3	10153419	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
19	10167258	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.357143
19	10167292	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.1875
19	10167298	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.15
2	10174653	A->G	+	ENSG00000284681	AC007240.1	protein_coding	Intergenic	.	.	Alu	0.181818
2	10174657	A->G	+	ENSG00000284681	AC007240.1	protein_coding	Intergenic	.	.	Alu	0.2
17	10186051	A->G	-	ENSG00000007237	GAS7	protein_coding	Intergenic	.	.	Alu	0.3
2	10199526	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.357143
2	10199527	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.214286
2	10199689	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.2
2	10199700	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.117647
2	10199928	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.230769
2	10199934	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.3
2	10199998	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.125
2	10200033	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.35
2	10200042	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.0909091
2	10200062	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.0869565
2	10200076	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.15
2	10200085	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.823529
2	10200095	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.153846
2	10200107	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.235294
2	10200956	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.181818
3	10309023	A->G	-	ENSG00000157020	SEC13	protein_coding	Intergenic	.	.	Alu	0.45
3	10309048	A->G	-	ENSG00000157020	SEC13	protein_coding	Intergenic	.	.	Alu	0.272727
3	10309066	A->G	-	ENSG00000157020	SEC13	protein_coding	Intergenic	.	.	Alu	0.214286
5	10368369	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.384615
5	10368371	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.846154
5	10368375	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.769231
5	10368377	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.214286
5	10368423	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.4375
5	10368447	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.4
5	10368557	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.882353
5	10368563	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	1
5	10368673	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.928571
5	10368679	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.363636
5	10368680	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.393939
5	10368719	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.121212
5	10368753	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.15
5	10368782	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.269231
5	10368793	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.380952
5	10368794	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.2
5	10368835	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.136364
5	10368849	A->G	+	ENSG00000145495	6-Mar	protein_coding	Intergenic	.	.	Alu	0.3
1	10500714	A->G	+	ENSG00000142655	PEX14	protein_coding	Intergenic	.	.	Alu	0.636364
1	10500716	A->G	+	ENSG00000142655	PEX14	protein_coding	Intergenic	.	.	Alu	0.2
2	10638888	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.153846
2	10638892	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.5625
2	10639075	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.272727
2	10639076	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.3
5	10759837	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.2
5	10759840	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.3
5	10759892	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.181818
5	10759893	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.333333
5	10759958	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.133333
5	10759973	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.153846
5	10759974	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.25
19	10933226	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.2
19	10933233	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.181818
19	10933234	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.272727
19	10963117	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.166667
19	10963118	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.333333
19	10963191	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.454545
12	11054998	A->G	-	ENSG00000231887	PRH1	protein_coding	Intergenic	.	.	Alu	0.142857
7	11068272	A->G	+	ENSG00000106443	PHF14	protein_coding	Intergenic	.	.	Alu	0.230769
10	11196838	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.028169
10	11196839	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.0298507
12	11245614	A->G	+	ENSG00000275119	AC244131.2	lincRNA	Intergenic	.	.	Alu	0.8
12	11245640	A->G	+	ENSG00000275119	AC244131.2	lincRNA	Intergenic	.	.	Alu	0.722222
12	11245682	A->G	+	ENSG00000275119	AC244131.2	lincRNA	Intergenic	.	.	Alu	0.7
19	11450009	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.210526
19	11450010	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.277778
19	11450020	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.133333
19	11450083	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.181818
19	11450096	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.545455
19	11450217	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.5
19	11450362	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.2
19	11450371	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.125
19	11450380	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.1875
19	11450386	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.315789
19	11450392	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.6
19	11450409	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.923077
19	11450426	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.625
19	11450427	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intergenic	.	.	Alu	0.0833333
10	11583326	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.176471
10	11583386	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.0833333
10	11583387	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.0833333
10	11583464	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.2
12	11660409	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0952381
12	11660452	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.344828
12	11660468	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.263158
12	11660478	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.25
12	11660479	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.555556
12	11660484	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.148148
12	11660519	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.178571
12	11660520	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.115385
12	11660527	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.16
12	11660562	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.272727
16	11709390	A->G	-	ENSG00000153066	TXNDC11	protein_coding	Intergenic	.	.	Alu	0.2
12	11733246	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.153846
12	11734358	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.12
12	11734430	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.133333
12	11734431	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.125
12	11734447	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0909091
12	11734455	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0952381
12	11734460	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.1
12	11777086	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.2
16	11788676	A->G	-	ENSG00000122299	ZC3H7A	protein_coding	Intergenic	.	.	Alu	0.272727
12	11808902	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.2
12	11808939	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0833333
12	11808993	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.107143
12	11809029	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0588235
12	11809034	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.102564
12	11809044	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0833333
12	11818256	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.142857
12	11818408	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.1875
12	11824707	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.181818
8	11825317	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.263158
8	11825355	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.4
8	11825356	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.1
10	11858902	A->G	+	ENSG00000148426	PROSER2	protein_coding	Intergenic	.	.	Alu	0.166667
11	11860006	A->G	+	ENSG00000170242	USP47	protein_coding	Intergenic	.	.	Alu	0.4
19	11865799	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.75
19	11865880	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.285714
19	11865906	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.181818
19	11865907	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.318182
19	11865916	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.541667
19	11865933	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	0.307692
19	11896099	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.307692
19	11896115	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.117647
19	11896134	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.181818
10	11952613	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	11952675	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.133333
19	12004308	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.117647
19	12004371	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.136364
10	12019862	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.5
10	12019863	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.4
19	12029443	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.357143
10	12039871	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.181818
19	12040017	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.153846
19	12040876	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.2
19	12041847	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.166667
19	12289773	A->G	-	ENSG00000197857	ZNF44	protein_coding	Intergenic	.	.	Alu	0.272727
19	12289796	A->G	-	ENSG00000197857	ZNF44	protein_coding	Intergenic	.	.	Alu	0.285714
19	12289808	A->G	-	ENSG00000197857	ZNF44	protein_coding	Intergenic	.	.	Alu	0.142857
10	12356559	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.2
10	12373242	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.3
10	12373455	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.153846
10	12373485	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.125
10	12373512	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.181818
10	12373820	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.142857
10	12373846	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.176471
10	12374021	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.0645161
10	12374084	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.0769231
10	12375032	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.0487805
10	12375044	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.0588235
10	12376078	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.2
19	12523203	A->G	-	ENSG00000196826	AC008758.1	protein_coding	Intergenic	.	.	Alu	0.2
19	12523204	A->G	-	ENSG00000196826	AC008758.1	protein_coding	Intergenic	.	.	Alu	0.3
10	12569486	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.153846
10	12641790	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.166667
3	12654089	A->G	-	ENSG00000132155	RAF1	protein_coding	Intergenic	.	.	Alu	0.2
19	12659413	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.5
19	12660856	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.181818
19	12660864	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.117647
19	12660896	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.52381
18	12721017	A->G	+	ENSG00000128789	PSMG2	protein_coding	Intergenic	.	.	Alu	0.111111
12	12728456	A->G	+	ENSG00000178878	APOLD1	protein_coding	Intergenic	.	.	Alu	0.166667
19	12731878	A->G	-	ENSG00000123144	TRIR	protein_coding	Intergenic	.	.	Alu	0.333333
Y	12772697	A->G	+	ENSG00000114374	USP9Y	protein_coding	Intergenic	.	.	Alu	0.181818
Y	12772714	A->G	+	ENSG00000114374	USP9Y	protein_coding	Intergenic	.	.	Alu	0.142857
Y	12772715	A->G	+	ENSG00000114374	USP9Y	protein_coding	Intergenic	.	.	Alu	0.142857
Y	12772728	A->G	+	ENSG00000114374	USP9Y	protein_coding	Intergenic	.	.	Alu	0.214286
18	12850240	A->G	-	ENSG00000175354	PTPN2	protein_coding	Intergenic	.	.	Alu	0.181818
18	12967699	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.125
18	12967700	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.470588
18	12967704	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.176471
18	12967820	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.125
18	12967847	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.0869565
18	12967864	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.0952381
Y	13385830	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.125
Y	13386916	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.6
Y	13395385	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.3
Y	13395391	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.6
Y	13396003	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.0714286
Y	13396031	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.555556
Y	13396104	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.2
Y	13396184	A->G	-	ENSG00000183878	UTY	protein_coding	Intergenic	.	.	Alu	0.636364
18	13459036	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.727273
18	13459081	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.125
18	13459120	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.15
18	13459138	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.428571
18	13459487	A->G	+	ENSG00000168675	LDLRAD4	protein_coding	Intergenic	.	.	Alu	0.272727
6	13648212	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.15625
6	13648271	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0540541
6	13648278	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.075
6	13648286	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.333333
6	13648308	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0952381
6	13648312	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.12
6	13648411	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0740741
6	13686159	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.1
6	13686212	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0909091
6	13686220	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.1
11	13703789	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.285714
11	13703867	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0689655
11	13703868	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.103448
11	13703891	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0645161
11	13703915	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.419355
11	13703924	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.555556
11	13703950	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0645161
11	13703964	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.107143
11	13703965	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.12
11	13703989	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.137931
11	13703994	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.12
11	13703999	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0769231
11	13704027	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.1
1	13755996	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.75
1	13755997	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.65
19	13837899	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
19	13837925	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0769231
19	13838083	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
19	13838162	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
19	13838166	A->G	-	.	.	.	Intergenic	.	.	Alu	0.533333
6	14121399	A->G	+	ENSG00000112149	CD83	protein_coding	Intergenic	.	.	Alu	0.3
6	14121411	A->G	+	ENSG00000112149	CD83	protein_coding	Intergenic	.	.	Alu	0.125
6	14121412	A->G	+	ENSG00000112149	CD83	protein_coding	Intergenic	.	.	Alu	0.1875
6	14121445	A->G	+	ENSG00000112149	CD83	protein_coding	Intergenic	.	.	Alu	0.2
6	14121570	A->G	+	ENSG00000112149	CD83	protein_coding	Intergenic	.	.	Alu	0.133333
19	14414480	A->G	+	ENSG00000123136	DDX39A	protein_coding	Intergenic	.	.	Alu	0.181818
19	14414490	A->G	+	ENSG00000123136	DDX39A	protein_coding	Intergenic	.	.	Alu	0.727273
19	14414492	A->G	+	ENSG00000123136	DDX39A	protein_coding	Intergenic	.	.	Alu	0.545455
19	14414503	A->G	+	ENSG00000123136	DDX39A	protein_coding	Intergenic	.	.	Alu	0.4
19	14414512	A->G	+	ENSG00000123136	DDX39A	protein_coding	Intergenic	.	.	Alu	0.125
19	14414884	A->G	+	ENSG00000123136	DDX39A	protein_coding	Intergenic	.	.	Alu	0.363636
16	14599105	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.363636
16	14599131	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.272727
16	14599324	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.153846
10	14850168	A->G	+	ENSG00000187522	HSPA14	protein_coding	Intergenic	.	.	Alu	0.142857
10	14850197	A->G	+	ENSG00000187522	HSPA14	protein_coding	Intergenic	.	.	Alu	0.125
21	14973904	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0869565
21	14973911	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0666667
21	14981977	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.117647
21	14982122	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.153846
3	15018617	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.333333
3	15018662	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.384615
3	15018807	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.583333
3	15018838	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.333333
3	15018839	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.181818
3	15018841	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.2
3	15018868	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.166667
3	15019103	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.2
3	15019105	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.6
21	15019691	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0555556
21	15019919	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.0571429
10	15076749	A->G	-	.	.	.	Intergenic	.	.	Alu	0.9
3	15248799	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.384615
3	15248875	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.166667
3	15248911	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.153846
3	15248916	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.363636
6	15254922	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.272727
6	15278807	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.190476
6	15278813	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.266667
19	15339390	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
19	15339391	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
19	15357830	A->G	-	ENSG00000105127	AKAP8	protein_coding	Intergenic	.	.	Alu	0.25
6	15381212	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.142857
19	15385878	A->G	-	ENSG00000011243	AKAP8L	protein_coding	Intergenic	.	.	Alu	0.133333
9	15427990	A->G	+	ENSG00000164975	SNAPC3	protein_coding	Intergenic	.	.	Alu	0.272727
9	15427996	A->G	+	ENSG00000164975	SNAPC3	protein_coding	Intergenic	.	.	Alu	0.181818
9	15497415	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.235294
9	15497432	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.117647
9	15497442	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	1
9	15497443	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	1
9	15497491	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.0833333
9	15497503	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.0909091
9	15497509	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intergenic	.	.	Alu	0.421053
6	15515896	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.4
17	15523597	A->G	-	ENSG00000175106	TVP23C	protein_coding	Intergenic	.	.	Alu	0.25
6	15546203	A->G	-	ENSG00000047579	DTNBP1	protein_coding	Intergenic	.	.	Alu	0.333333
4	15634327	A->G	-	ENSG00000118564	FBXL5	protein_coding	Intergenic	.	.	Alu	0.230769
6	15659645	A->G	-	ENSG00000047579	DTNBP1	protein_coding	Intergenic	.	.	Alu	0.363636
1	15688450	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.166667
1	15689167	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.1875
16	15705815	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.272727
16	15705834	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.166667
16	15705910	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.272727
1	15710052	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.153846
1	15878889	A->G	+	ENSG00000065526	SPEN	protein_coding	Intergenic	.	.	Alu	0.181818
1	15878890	A->G	+	ENSG00000065526	SPEN	protein_coding	Intergenic	.	.	Alu	0.2
1	15879188	A->G	+	ENSG00000065526	SPEN	protein_coding	Intergenic	.	.	Alu	0.181818
1	15879234	A->G	+	ENSG00000065526	SPEN	protein_coding	Intergenic	.	.	Alu	0.181818
1	15879255	A->G	+	ENSG00000065526	SPEN	protein_coding	Intergenic	.	.	Alu	0.307692
12	15901660	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.133333
12	15901740	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.125
12	15902076	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.25
16	15952801	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.111111
16	15952820	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	15952839	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.344828
16	15952929	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.103448
16	15952932	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.148148
16	15952997	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0769231
16	15953025	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.136364
16	15953067	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.125
16	15953135	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.166667
16	15953165	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.166667
16	15953216	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.142857
16	15953225	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.117647
16	15953232	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.117647
16	15953293	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
16	15999426	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.3
12	16016665	A->G	+	ENSG00000023697	DERA	protein_coding	Intergenic	.	.	Alu	0.4
17	16050360	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.142857
17	16050450	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.181818
17	16050469	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.181818
16	16053636	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.461538
16	16053712	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
16	16069814	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.153846
19	16082845	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.181818
19	16085317	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.4
19	16085318	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.272727
19	16086010	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.133333
19	16086024	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.142857
16	16089427	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
17	16092430	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.272727
17	16107090	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.0952381
17	16107098	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.16
17	16107100	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.16
16	16139492	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.272727
19	16156778	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.2
19	16156787	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.230769
19	16156811	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.166667
19	16156823	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.2
19	16156875	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.230769
19	16156911	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.2
1	16241001	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
17	16383909	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
2	16446433	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
2	16446459	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
19	16638013	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.333333
19	16638143	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.272727
19	16638145	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.923077
19	16638181	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.142857
19	16638185	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638215	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638220	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.2
19	16638371	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638389	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638432	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.266667
19	16638440	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.133333
19	16638472	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.142857
19	16638473	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.642857
19	16638474	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.285714
19	16638475	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.142857
19	16638477	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.692308
19	16638568	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.307692
19	16638574	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.1875
19	16640175	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.181818
19	16640176	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.166667
19	16640190	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.363636
19	16644258	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.111111
19	16644259	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.117647
19	16644294	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.214286
11	16740460	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0952381
11	16740482	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.545455
11	16740489	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.235294
11	16740502	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.28
11	16740521	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.125
11	16740562	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.225806
11	16740578	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.392857
11	16740587	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0909091
11	16740602	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0588235
11	16740612	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0645161
11	16740696	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.194444
11	16740839	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0869565
11	16740844	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0909091
11	16740930	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0487805
11	16740938	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0857143
11	16740941	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.111111
11	16740942	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0833333
11	16740943	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.2
11	16740949	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.115385
11	16740962	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.375
11	16756654	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.2
11	16756904	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
1	17042721	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.384615
1	17049817	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.166667
1	17049866	A->G	-	ENSG00000117118	SDHB	protein_coding	Intergenic	.	.	Alu	0.333333
19	17081632	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.153846
19	17081729	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.1
19	17081734	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.136364
19	17081798	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3
19	17084784	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17092650	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.125
19	17098747	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.133333
19	17103794	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.166667
19	17105444	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17105477	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.272727
19	17124667	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17178348	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3
19	17178910	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17178911	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3
11	17285173	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.5
11	17285317	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.142857
11	17285320	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.266667
11	17285363	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0952381
11	17285364	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	1
11	17285387	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.666667
11	17285430	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	17285434	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.428571
11	17285456	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17297829	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.4
11	17297855	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.105263
11	17297896	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.190476
11	17297906	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.105263
11	17298047	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0714286
11	17298198	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.210526
11	17298288	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.25
11	17298325	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0909091
11	17298328	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.4
11	17298364	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.105263
11	17298375	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.464286
11	17298402	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.24
11	17298405	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.08
11	17298447	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.16
11	17298453	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.125
11	17298461	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.4
11	17298464	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0689655
11	17298465	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.266667
11	17298488	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0769231
11	17298493	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.212121
11	17298509	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.176471
11	17298520	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.107143
11	17298523	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.142857
11	17298758	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17298792	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.181818
11	17298798	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.3
11	17298799	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17298838	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.142857
11	17305279	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.272727
11	17306766	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.181818
11	17306815	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17306867	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	17309218	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.1875
11	17336100	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17336104	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	17336123	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.117647
11	17336126	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.307692
11	17336132	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	17336163	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.181818
11	17336171	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.125
11	17336190	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.333333
11	17336499	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17336500	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.208333
11	17336674	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	17336675	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.173913
11	17336994	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.285714
11	17337040	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.133333
11	17337045	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	17337070	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0952381
11	17337082	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.619048
11	17337113	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0869565
11	17337124	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.1875
11	17337126	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	17337175	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.0740741
11	17337176	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	17337193	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.307692
16	17456440	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.166667
16	17456476	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.393939
16	17456487	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.25
3	17464063	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.181818
3	17464073	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.3
3	17464084	A->G	-	ENSG00000131374	TBC1D5	protein_coding	Intergenic	.	.	Alu	0.272727
6	17645372	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.272727
6	17645386	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.214286
6	17645391	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.166667
10	17687219	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.75
10	17687220	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.7
10	17687354	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.230769
10	17687378	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.692308
6	17981529	A->G	-	ENSG00000137177	KIF13A	protein_coding	Intergenic	.	.	Alu	0.181818
4	17990371	A->G	-	ENSG00000178177	LCORL	protein_coding	Intergenic	.	.	Alu	0.181818
4	17990394	A->G	-	ENSG00000178177	LCORL	protein_coding	Intergenic	.	.	Alu	0.125
8	17997838	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.0689655
8	17997839	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.12
6	18239213	A->G	-	ENSG00000124795	DEK	protein_coding	Intergenic	.	.	Alu	0.2
10	18259783	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.2
17	18271812	A->G	-	ENSG00000177302	TOP3A	protein_coding	Intergenic	.	.	Alu	0.3
11	18512775	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.111111
11	18512868	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.269231
11	18512905	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.142857
11	18512906	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.214286
11	18512907	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.2
11	18512910	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.333333
11	18520773	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.181818
11	18520868	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.4
11	18520919	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.181818
11	18521429	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.16129
11	18521431	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.121212
11	18521466	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0740741
11	18521471	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0714286
11	18521522	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0714286
11	18521538	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0909091
11	18521766	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0714286
11	18521774	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.290323
11	18521798	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0769231
11	18521809	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0952381
11	18521874	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.333333
11	18521897	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.222222
11	18521901	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.25
11	18521944	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.117647
20	18616665	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.166667
10	18652656	A->G	-	ENSG00000241058	NSUN6	protein_coding	Intergenic	.	.	Alu	0.25
10	18652657	A->G	-	ENSG00000241058	NSUN6	protein_coding	Intergenic	.	.	Alu	0.166667
20	18660052	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.142857
20	18660091	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.4
20	18660117	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.272727
20	18660118	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.545455
20	18660410	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.5
19	18908849	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.2
19	18908850	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.3
19	18909579	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0810811
19	18909595	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.139535
19	18909608	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0714286
19	18909615	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.138889
19	18909616	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.205128
19	18909630	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.111111
19	18909651	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0625
19	18909656	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0425532
19	18909750	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.111111
19	18909786	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.133333
19	18917551	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.117647
Y	19050806	A->G	-	ENSG00000176728	TTTY14	lincRNA	Intergenic	.	.	Alu	0.166667
Y	19050837	A->G	-	ENSG00000176728	TTTY14	lincRNA	Intergenic	.	.	Alu	0.166667
Y	19050855	A->G	-	ENSG00000176728	TTTY14	lincRNA	Intergenic	.	.	Alu	0.181818
Y	19051035	A->G	-	ENSG00000176728	TTTY14	lincRNA	Intergenic	.	.	Alu	0.363636
12	19149382	A->G	+	ENSG00000253284	AC092828.1	sense_intronic	Intergenic	.	.	Alu	0.1875
12	19149393	A->G	+	ENSG00000253284	AC092828.1	sense_intronic	Intergenic	.	.	Alu	0.2
1	19225553	A->G	+	ENSG00000127463	EMC1	protein_coding	Intergenic	.	.	Alu	0.181818
9	19256911	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.2
9	19291489	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.25
9	19291545	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.2
9	19291554	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.181818
9	19291562	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.3
9	19291626	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.133333
9	19291647	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.166667
9	19295516	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.133333
1	19296369	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
9	19306923	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.7
9	19307169	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.4375
9	19307196	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.166667
9	19307212	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.266667
9	19307248	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.117647
9	19307288	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.15
9	19321667	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.235294
9	19321668	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.235294
9	19321669	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.315789
9	19321738	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.285714
22	19379187	A->G	-	ENSG00000100084	HIRA	protein_coding	Intergenic	.	.	Alu	0.454545
12	19446461	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.428571
19	19456033	A->G	+	ENSG00000167491	GATAD2A	protein_coding	Intergenic	.	.	Alu	0.25
19	19469836	A->G	+	ENSG00000167491	GATAD2A	protein_coding	Intergenic	.	.	Alu	0.2
13	19714580	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.0526316
13	19714635	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.0588235
13	19714691	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.272727
13	19714713	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.125
13	19714714	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.133333
13	19714741	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.285714
10	19766786	A->G	+	ENSG00000204740	MALRD1	protein_coding	Intergenic	.	.	Alu	0.181818
10	19766794	A->G	+	ENSG00000204740	MALRD1	protein_coding	Intergenic	.	.	Alu	0.833333
19	19816269	A->G	-	ENSG00000267419	AC011477.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.117647
8	19825361	A->G	+	ENSG00000104613	INTS10	protein_coding	Intergenic	.	.	Alu	0.3
3	19952093	A->G	+	ENSG00000144566	RAB5A	protein_coding	Intergenic	.	.	Alu	0.214286
13	19976123	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.125
13	19985657	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.117647
13	19985755	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.1875
13	19985957	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.153846
13	19986082	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.133333
13	19986847	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.152174
13	19986874	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0833333
13	19986919	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0454545
13	19986925	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0555556
13	19986927	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0526316
13	19986947	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.105263
13	19986958	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0769231
13	19986998	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.148148
13	19987011	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.130435
13	19987046	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.117647
13	19987050	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.166667
13	19987328	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.333333
13	19987510	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.235294
13	19987703	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.166667
13	19987749	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.285714
13	19987805	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.153846
13	19987864	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0769231
3	20044226	A->G	+	ENSG00000114166	KAT2B	protein_coding	Intergenic	.	.	Alu	0.181818
13	20079066	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.384615
13	20079110	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.166667
19	20227241	A->G	-	ENSG00000267383	AC011447.3	antisense	Intergenic	.	.	Alu	0.272727
19	20227268	A->G	-	ENSG00000267383	AC011447.3	antisense	Intergenic	.	.	Alu	0.166667
19	20227294	A->G	-	ENSG00000267383	AC011447.3	antisense	Intergenic	.	.	Alu	0.25
10	20247423	A->G	+	ENSG00000120594	PLXDC2	protein_coding	Intergenic	.	.	Alu	0.272727
X	20248639	A->G	-	ENSG00000177189	RPS6KA3	protein_coding	Intergenic	.	.	Alu	0.15
2	20292522	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.142857
2	20292527	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.142857
2	20292565	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.1875
2	20292578	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.166667
2	20292582	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.153846
2	20292589	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.538462
22	20527748	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.3
6	20551938	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.357143
6	20551950	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.153846
6	20551981	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.705882
6	20552083	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.75
6	20552084	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.647059
6	20552228	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.153846
6	20552269	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.166667
6	20552275	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.153846
6	20552277	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	20559095	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.125
22	20561475	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.125
1	20647004	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.2
1	20647040	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.153846
1	20647119	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.133333
1	20647262	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.3
1	20647286	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.1875
1	20647290	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.25
1	20647303	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.173913
1	20647595	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.25
1	20647664	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.142857
1	20647715	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.235294
1	20647915	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.176471
1	20647941	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.117647
1	20647980	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.2
16	20697939	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.37931
16	20697940	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.75
16	20698139	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.166667
16	20705252	A->G	+	ENSG00000005187	ACSM3	protein_coding	Intergenic	.	.	Alu	0.272727
16	20705258	A->G	+	ENSG00000005187	ACSM3	protein_coding	Intergenic	.	.	Alu	0.181818
1	20749513	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.384615
1	20751011	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.384615
1	20751012	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.153846
22	20756272	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.230769
1	20758567	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.363636
1	20758618	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.272727
22	20759263	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.2
22	20759662	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.333333
22	20759663	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.363636
1	20760077	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.16
1	20760115	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.133333
1	20760121	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.0714286
13	20811470	A->G	-	ENSG00000132953	XPO4	protein_coding	Intergenic	.	.	Alu	0.4
13	20811560	A->G	-	ENSG00000132953	XPO4	protein_coding	Intergenic	.	.	Alu	0.333333
13	20811567	A->G	-	ENSG00000132953	XPO4	protein_coding	Intergenic	.	.	Alu	0.333333
1	20872781	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.181818
18	21017387	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.25
18	21017393	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.545455
18	21017396	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.166667
18	21017462	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.181818
18	21017485	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.2
18	21027165	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.25
17	21041022	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.181818
17	21041067	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.105263
6	21114061	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.117647
6	21114096	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.133333
6	21114097	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.285714
1	21158236	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.176471
1	21158273	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.214286
1	21158300	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.666667
19	21315938	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.230769
19	21316199	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.5
19	21316206	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.333333
19	21316257	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.222222
19	21316262	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.473684
19	21316263	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.315789
19	21316344	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.2
19	21316376	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.111111
19	21316377	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.111111
19	21316399	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.153846
19	21322439	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.4
19	21322499	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.3
13	21395729	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.117647
19	21406102	A->G	+	ENSG00000196268	ZNF493	protein_coding	Intergenic	.	.	Alu	0.176471
13	21414499	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.105263
13	21414515	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.181818
13	21414576	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.25
13	21426673	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.111111
13	21426874	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0833333
13	21432415	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.12
13	21432458	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0540541
13	21432490	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.1
13	21432494	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.09375
13	21432497	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0540541
13	21432537	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.333333
13	21432538	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.259259
13	21432578	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.133333
13	21432672	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.2
13	21432673	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.133333
13	21441459	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.222222
13	21441478	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0740741
13	21441496	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0487805
13	21441524	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0571429
19	21445760	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.176471
19	21445765	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.235294
14	21447458	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.181818
19	21451659	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.5
19	21451694	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.272727
19	21462945	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.3
14	21470154	A->G	-	ENSG00000129472	RAB2B	protein_coding	Intergenic	.	.	Alu	0.157895
13	21498503	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.181818
13	21498517	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.153846
13	21498567	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.166667
13	21537634	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.153846
19	21538489	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.666667
19	21538496	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.2
19	21538502	A->G	+	ENSG00000197013	ZNF429	protein_coding	Intergenic	.	.	Alu	0.6
13	21549064	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.3
13	21559592	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.111111
13	21559649	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.111111
13	21559692	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.105263
13	21563211	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.166667
13	21563941	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.357143
22	21616531	A->G	+	ENSG00000185651	UBE2L3	protein_coding	Intergenic	.	.	Alu	0.142857
10	21657273	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.4
1	21685503	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.4
1	21685516	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.428571
19	21731535	A->G	-	ENSG00000197020	ZNF100	protein_coding	Intergenic	.	.	Alu	0.5
19	21760868	A->G	-	ENSG00000197020	ZNF100	protein_coding	Intergenic	.	.	Alu	0.2
19	21760895	A->G	-	ENSG00000197020	ZNF100	protein_coding	Intergenic	.	.	Alu	0.363636
19	21760901	A->G	-	ENSG00000197020	ZNF100	protein_coding	Intergenic	.	.	Alu	0.2
1	21780840	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.166667
19	21821034	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.307692
10	21829116	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.181818
22	21834003	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.142857
19	21837702	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.2
22	21863339	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.666667
22	21863399	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.181818
22	21863405	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.7
22	21863546	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.363636
3	21895451	A->G	-	ENSG00000151789	ZNF385D	protein_coding	Intergenic	.	.	Alu	0.125
10	21908984	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.3
10	21909024	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.5
10	21949590	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.117647
10	21949599	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.166667
16	21954773	A->G	+	ENSG00000140740	UQCRC2	protein_coding	Intergenic	.	.	Alu	0.190476
16	21954782	A->G	+	ENSG00000140740	UQCRC2	protein_coding	Intergenic	.	.	Alu	0.0952381
16	21954815	A->G	+	ENSG00000140740	UQCRC2	protein_coding	Intergenic	.	.	Alu	0.111111
16	21955012	A->G	+	ENSG00000140740	UQCRC2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	21985335	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.166667
10	21985452	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.461538
10	21985453	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.153846
10	21986797	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.0909091
10	21986873	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.142857
10	21986943	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.181818
1	22062628	A->G	+	ENSG00000230068	CDC42-IT1	sense_intronic	Intergenic	.	.	Alu	0.1
1	22073317	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.5
1	22073418	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.153846
1	22073419	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.32
6	22081434	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.461538
6	22081469	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.416667
6	22081471	A->G	+	ENSG00000272168	CASC15	lincRNA	Intergenic	.	.	Alu	0.384615
16	22396317	A->G	-	ENSG00000230872	MFSD13B	unitary_pseudogene	Intergenic	.	.	Alu	0.266667
16	22396343	A->G	-	ENSG00000230872	MFSD13B	unitary_pseudogene	Intergenic	.	.	Alu	0.25
16	22396463	A->G	-	ENSG00000230872	MFSD13B	unitary_pseudogene	Intergenic	.	.	Alu	0.615385
16	22411826	A->G	-	ENSG00000140743	CDR2	protein_coding	Intergenic	.	.	Alu	0.3
16	22412143	A->G	-	ENSG00000140743	CDR2	protein_coding	Intergenic	.	.	Alu	0.2
8	22479568	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.272727
8	22479597	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	1
8	22530655	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.7
8	22530681	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.230769
8	22617076	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.2
8	22617093	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.705882
8	22617094	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.470588
8	22632988	A->G	-	ENSG00000147439	BIN3	protein_coding	Intergenic	.	.	Alu	0.230769
14	22916354	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.75
14	22916385	A->G	-	ENSG00000100461	RBM23	protein_coding	Intergenic	.	.	Alu	0.153846
1	23037049	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.5
1	23037183	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	23037184	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.2
1	23037219	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.277778
1	23037236	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.333333
1	23037245	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.411765
14	23082582	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.133333
14	23082583	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.133333
14	23082769	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.307692
14	23082778	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.166667
14	23082878	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.2
14	23082948	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.2
14	23096297	A->G	+	ENSG00000179933	C14orf119	protein_coding	Intergenic	.	.	Alu	0.454545
14	23096310	A->G	+	ENSG00000179933	C14orf119	protein_coding	Intergenic	.	.	Alu	0.166667
1	23152698	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.142857
1	23152699	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.266667
1	23152709	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.153846
1	23154349	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.571429
1	23154411	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	23154417	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.238095
1	23154427	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	23154440	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0769231
1	23154458	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.145833
1	23154464	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.659091
1	23154490	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.0606061
1	23154505	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.275862
1	23154525	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	1
1	23154533	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	1
1	23154759	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.136364
1	23154783	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.382353
1	23154788	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.151515
22	23195514	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.137931
22	23195519	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.1
22	23199066	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.153846
1	23333944	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.142857
1	23334024	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.153846
1	23334090	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.166667
7	23501917	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
7	23515368	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.5
7	23515408	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0740741
7	23515706	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.214286
7	23515710	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.166667
7	23515762	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.461538
7	23515764	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.428571
7	23515778	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.117647
7	23515825	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.3125
7	23515827	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.428571
7	23518891	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.166667
7	23520785	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0967742
7	23520790	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0606061
7	23520872	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0810811
7	23520948	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0833333
2	23701581	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.818182
2	23701589	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.333333
2	23701868	A->G	-	ENSG00000119771	KLHL29	protein_coding	Intergenic	.	.	Alu	0.2
2	23769781	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.333333
2	23769783	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.285714
2	23769788	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
2	23769956	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.272727
2	23769957	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.272727
2	23779279	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
2	23779314	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.214286
2	23779316	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.285714
2	23779447	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23779448	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23781408	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
1	23781412	A->G	+	ENSG00000057757	PITHD1	protein_coding	Intergenic	.	.	Alu	0.2
1	23781413	A->G	+	ENSG00000057757	PITHD1	protein_coding	Intergenic	.	.	Alu	0.2
2	23781537	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.538462
2	23781582	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0869565
2	23781602	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.28
2	23781603	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.107143
2	23781629	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.210526
2	23781915	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.105263
2	23781941	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.105263
2	23781951	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
2	23781957	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.461538
2	23781983	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0869565
2	23781991	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.111111
2	23781992	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.111111
2	23781993	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.111111
2	23782012	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.136364
2	23782044	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0645161
2	23782096	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0740741
3	23817218	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0857143
3	23817233	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.106383
3	23817275	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0357143
3	23832959	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.285714
3	23833017	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.4
2	23834408	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.3
2	23845609	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
2	23845672	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.529412
2	23845677	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.294118
2	23845744	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.25
2	23845747	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.176471
2	23845749	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.111111
3	23846307	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.133333
3	23846617	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0714286
3	23848349	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.454545
3	23848350	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.363636
3	23854179	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.133333
2	23857874	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.181818
2	23857948	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
16	23873250	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.153846
3	23883725	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.153846
2	23899861	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.166667
3	23904045	A->G	+	ENSG00000197885	NKIRAS1	protein_coding	Intergenic	.	.	Alu	0.4
3	23904054	A->G	+	ENSG00000197885	NKIRAS1	protein_coding	Intergenic	.	.	Alu	0.272727
3	23904068	A->G	+	ENSG00000197885	NKIRAS1	protein_coding	Intergenic	.	.	Alu	0.2
2	23981191	A->G	+	ENSG00000173960	UBXN2A	protein_coding	Intergenic	.	.	Alu	0.272727
2	23981375	A->G	+	ENSG00000173960	UBXN2A	protein_coding	Intergenic	.	.	Alu	0.142857
19	24055349	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.2
19	24055396	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.454545
19	24055418	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.153846
19	24055420	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.285714
19	24055529	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.454545
19	24061877	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0714286
19	24061882	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0833333
19	24061883	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.130435
19	24062040	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.230769
X	24078079	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0465116
19	24080962	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.235294
19	24080984	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.272727
19	24082038	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.181818
2	24089854	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.4
2	24089855	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.7
2	24089864	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.363636
2	24089919	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.833333
19	24089935	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0714286
19	24089936	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.111111
2	24089956	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.4
19	24090001	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.705882
19	24090002	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.705882
19	24090010	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.25
19	24090011	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.153846
19	24090012	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.133333
19	24090061	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.461538
19	24090078	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.454545
19	24090087	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.153846
19	24090091	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.357143
2	24090103	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.153846
19	24090110	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.5
19	24090113	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.266667
2	24090122	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.166667
19	24090153	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0833333
19	24090163	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.214286
19	24090182	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.0689655
2	24090904	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.4
19	24091219	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.181818
2	24092050	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24092311	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.117647
2	24092320	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.133333
2	24092367	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.105263
2	24092455	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24092456	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24092495	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.285714
19	24097661	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.12
19	24097702	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.153846
19	24097725	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.4
14	24170956	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
14	24170976	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
14	24170977	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
14	24170988	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
14	24171039	A->G	+	.	.	.	Intergenic	.	.	Alu	0.769231
14	24171040	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
14	24171058	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
14	24171078	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
14	24212512	A->G	-	ENSG00000254505	CHMP4A	protein_coding	Intergenic	.	.	Alu	0.0677966
2	24327431	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.1
2	24327436	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.190476
2	24327493	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.0714286
2	24337623	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.133333
2	24337764	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.25
2	24347003	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.133333
2	24347059	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.307692
2	24347083	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.333333
2	24347092	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.133333
22	24384889	A->G	+	ENSG00000100014	SPECC1L	protein_coding	Intergenic	.	.	Alu	0.2
22	24384953	A->G	+	ENSG00000100014	SPECC1L	protein_coding	Intergenic	.	.	Alu	0.307692
13	24425045	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.692308
13	24425067	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.3
13	24476252	A->G	-	ENSG00000205822	TPTE2P6	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
2	24514534	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.181818
2	24519551	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.2
2	24523352	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.214286
2	24523357	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.285714
2	24523485	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.2
2	24523495	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.166667
2	24523672	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	24523673	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	24523678	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.0714286
4	24531186	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.142857
4	24531227	A->G	-	ENSG00000109606	DHX15	protein_coding	Intergenic	.	.	Alu	0.461538
2	24547868	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.4
2	24547878	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.214286
2	24547895	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.105263
2	24547909	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.133333
22	24573021	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.529412
22	24573093	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.1875
22	24573096	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.222222
22	24573119	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.192308
22	24573124	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.407407
22	24573191	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.12
22	24573660	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.344828
22	24573661	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.25
22	24573702	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.217391
22	24573723	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0869565
22	24573726	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0714286
22	24573787	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.2
22	24573814	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.4
22	24573832	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.181818
22	24573833	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.153846
22	24573838	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.142857
22	24574574	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.366667
22	24574602	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0967742
22	24574608	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.151515
22	24574615	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.15625
22	24574641	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.75
22	24574646	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0625
22	24574654	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0645161
22	24574671	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.527778
22	24574675	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.277778
22	24574678	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.354839
22	24574681	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.117647
22	24574694	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0555556
22	24574703	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.236842
22	24574707	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.175
22	24574708	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0769231
22	24574725	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0555556
22	24574742	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.380952
22	24574751	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.097561
22	24574752	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.47619
22	24574764	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0625
22	24574776	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.111111
22	24574777	A->G	+	ENSG00000100028	SNRPD3	protein_coding	Intergenic	.	.	Alu	0.0384615
1	24768716	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.2
1	24768731	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.214286
1	24768790	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.142857
1	24791970	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.166667
15	24980574	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intergenic	.	.	Alu	0.25
6	25016001	A->G	-	ENSG00000111913	RIPOR2	protein_coding	Intergenic	.	.	Alu	0.2
6	25020919	A->G	-	ENSG00000111913	RIPOR2	protein_coding	Intergenic	.	.	Alu	0.230769
4	25157641	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.105263
4	25157673	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.4
4	25157677	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.285714
4	25157683	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.636364
4	25157740	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.176471
4	25157750	A->G	-	ENSG00000109618	SEPSECS	protein_coding	Intergenic	.	.	Alu	0.368421
12	25231213	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0487805
12	25231226	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.130435
12	25231230	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0416667
12	25231250	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.277778
12	25231266	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.111111
12	25231279	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0444444
12	25231306	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0444444
12	25231314	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0952381
12	25231324	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.25
12	25231355	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0465116
12	25231356	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.139535
12	25231364	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0555556
8	25254565	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.1
8	25254571	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.15
8	25254590	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.142857
8	25254655	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.117647
4	25279905	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
13	25282822	A->G	-	ENSG00000139505	MTMR6	protein_coding	Intergenic	.	.	Alu	0.142857
13	25306373	A->G	+	ENSG00000139496	NUP58	protein_coding	Intergenic	.	.	Alu	0.136364
13	25306374	A->G	+	ENSG00000139496	NUP58	protein_coding	Intergenic	.	.	Alu	0.1
20	25366538	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.272727
22	25377214	A->G	-	ENSG00000100068	LRP5L	protein_coding	Intergenic	.	.	Alu	0.153846
1	25437841	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.272727
1	25437870	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.25
1	25438702	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.142857
1	25438769	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.3
1	25438819	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.171429
1	25438820	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.0714286
1	25451645	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.4
1	25451707	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.2
1	25451712	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.125
1	25451759	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.208333
1	25451763	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	25451785	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.3
1	25451827	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.2
1	25451831	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.1
1	25451838	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.388889
1	25453516	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.181818
1	25453583	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.333333
1	25453584	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.454545
1	25480811	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.214286
1	25480851	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.125
3	25661138	A->G	-	ENSG00000077097	TOP2B	protein_coding	Intergenic	.	.	Alu	0.025
1	25895138	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.25
1	25895165	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.166667
1	25895199	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.5
1	25895200	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.285714
1	25895214	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.5
1	25895218	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.105263
1	25895267	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.16
1	25895301	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.176471
1	25895302	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.117647
1	25895311	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.461538
1	25895379	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.153846
2	26041784	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.166667
18	26044413	A->G	-	ENSG00000141380	SS18	protein_coding	Intergenic	.	.	Alu	0.153846
2	26057290	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.153846
18	26169683	A->G	-	ENSG00000154611	PSMA8	protein_coding	Intergenic	.	.	Alu	0.25
2	26255379	A->G	+	ENSG00000138029	HADHB	protein_coding	Intergenic	.	.	Alu	0.0689655
2	26255424	A->G	+	ENSG00000138029	HADHB	protein_coding	Intergenic	.	.	Alu	0.0540541
8	26306356	A->G	+	ENSG00000221914	PPP2R2A	protein_coding	Intergenic	.	.	Alu	0.0952381
12	26424794	A->G	-	ENSG00000123104	ITPR2	protein_coding	Intergenic	.	.	Alu	0.166667
12	26424845	A->G	-	ENSG00000123104	ITPR2	protein_coding	Intergenic	.	.	Alu	0.214286
12	26424852	A->G	-	ENSG00000123104	ITPR2	protein_coding	Intergenic	.	.	Alu	0.285714
10	26443799	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.166667
22	26449495	A->G	-	ENSG00000100099	HPS4	protein_coding	Intergenic	.	.	Alu	0.2
10	26543346	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.166667
10	26564574	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.142857
10	26564656	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.142857
1	26715951	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0526316
1	26715995	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.075
1	26716059	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0833333
1	26716063	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0857143
1	26716085	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.103448
1	26716086	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.166667
1	26716099	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0625
1	26719904	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26719991	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.25
1	26720006	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	26720089	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.117647
1	26720130	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.1
1	26720131	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	26720144	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.105263
1	26720186	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.235294
1	26720353	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	26720359	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.375
1	26720365	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.333333
1	26720423	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26720425	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.176471
1	26720743	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.266667
1	26720757	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.176471
1	26720818	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26736230	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.461538
1	26736231	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.333333
1	26736258	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.1875
1	26736276	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.272727
1	26758498	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.2
12	27039269	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.388889
12	27039343	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.272727
12	27039409	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.388889
12	27039431	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.115385
12	27039432	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.615385
12	27039482	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.25
12	27039671	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.153846
12	27039714	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0869565
12	27039730	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0952381
12	27039758	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.142857
12	27039780	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.470588
12	27039790	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.5
12	27039816	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.153846
12	27039857	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.9
12	27039902	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.263158
10	27125779	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.290323
10	27125805	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.28
10	27125808	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.08
10	27125821	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.263158
10	27125936	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.375
10	27125958	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.133333
13	27141091	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.2
17	27298045	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.4
17	27302147	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.166667
17	27302153	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.323529
17	27302155	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.0833333
2	27345810	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.166667
2	27346164	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.142857
2	27346172	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.105263
2	27346242	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.230769
2	27346243	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.307692
2	27346519	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.2
2	27346645	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.1875
2	27346914	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.125
2	27346928	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.2
1	27396921	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	27396924	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	27818145	A->G	+	ENSG00000117758	STX12	protein_coding	Intergenic	.	.	Alu	0.125
1	27818195	A->G	+	ENSG00000117758	STX12	protein_coding	Intergenic	.	.	Alu	0.230769
22	27910083	A->G	-	ENSG00000180957	PITPNB	protein_coding	Intergenic	.	.	Alu	0.133333
13	28006883	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.4
13	28006899	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.4
13	28020573	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28020619	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28020627	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.3
13	28028645	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.272727
13	28028836	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28028855	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.176471
13	28028860	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.117647
13	28028867	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.111111
13	28028874	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.388889
13	28028879	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.444444
13	28028920	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.36
13	28028946	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.15
13	28028959	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.176471
13	28028995	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.25
13	28029000	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.105263
13	28029146	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.545455
13	28029147	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28029280	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.181818
10	28092647	A->G	-	ENSG00000150054	MPP7	protein_coding	Intergenic	.	.	Alu	0.111111
10	28092658	A->G	-	ENSG00000150054	MPP7	protein_coding	Intergenic	.	.	Alu	0.1
10	28093571	A->G	-	ENSG00000150054	MPP7	protein_coding	Intergenic	.	.	Alu	0.153846
13	28146716	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.263158
13	28146723	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.157895
13	28146761	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0869565
13	28146766	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.210526
13	28146767	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.5
13	28146821	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0588235
13	28146822	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0909091
13	28146823	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0909091
13	28146828	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.133333
13	28146848	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.117647
13	28146854	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.243243
13	28146860	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0882353
13	28146881	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0666667
13	28146887	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.115385
13	28146895	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.15
13	28146896	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.272727
13	28146965	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.117647
13	28150526	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.111111
13	28150558	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.105263
13	28156725	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0882353
13	28188408	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0689655
13	28188420	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0714286
13	28188521	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0833333
13	28188543	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.240741
13	28188552	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.148148
13	28189254	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.1875
13	28189262	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.214286
13	28189263	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.333333
13	28189268	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28189314	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.166667
13	28189315	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.333333
13	28189320	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.25
13	28189471	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.307692
13	28189497	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28189499	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.214286
13	28189501	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28190528	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.357143
13	28193487	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0714286
13	28193492	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0612245
13	28193513	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.15
13	28193517	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0869565
13	28193522	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.107143
13	28193532	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.196078
13	28193556	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.04
13	28193581	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.037037
13	28193596	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0434783
13	28193612	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0425532
13	28193622	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0754717
13	28193663	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0666667
13	28193902	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.12
13	28193937	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.133333
13	28193992	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.117647
13	28193995	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0526316
13	28194001	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0789474
13	28194036	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.590909
13	28194037	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.695652
13	28194077	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.102564
13	28194078	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.121951
13	28198159	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.5
13	28198165	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.3
13	28198166	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.8
13	28198243	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.2
13	28205569	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.117647
13	28205657	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28205678	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0714286
13	28205722	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0769231
13	28205736	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.173913
13	28205750	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.1875
13	28217326	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0465116
13	28217435	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0869565
12	28238934	A->G	+	ENSG00000123106	CCDC91	protein_coding	Intergenic	.	.	Alu	0.2
12	28238935	A->G	+	ENSG00000123106	CCDC91	protein_coding	Intergenic	.	.	Alu	0.142857
12	28238972	A->G	+	ENSG00000123106	CCDC91	protein_coding	Intergenic	.	.	Alu	0.125
12	28238980	A->G	+	ENSG00000123106	CCDC91	protein_coding	Intergenic	.	.	Alu	0.133333
13	28264448	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28264459	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28264460	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.538462
10	28525763	A->G	-	ENSG00000254635	WAC-AS1	antisense	Intergenic	.	.	Alu	0.6
10	28538319	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0363636
10	28538357	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.153846
10	28538367	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0555556
10	28538405	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0634921
10	28538406	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.555556
10	28538417	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0273973
10	28538420	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.025
10	28538435	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.113402
10	28538468	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0561798
10	28538471	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.1875
10	28538474	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.150685
10	28538488	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.121212
10	28538497	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.121622
10	28538502	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.03125
10	28538532	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0392157
10	28538534	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0555556
10	28538665	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.135593
10	28538676	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0625
10	28538708	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.115942
10	28538711	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0895522
17	28670743	A->G	+	ENSG00000109111	SUPT6H	protein_coding	Intergenic	.	.	Alu	0.111111
17	28679754	A->G	+	ENSG00000109111	SUPT6H	protein_coding	Intergenic	.	.	Alu	0.4
17	28722116	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.125
17	28722308	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.34375
17	28722315	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.0967742
17	28722320	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.192308
1	28753441	A->G	+	ENSG00000198492	YTHDF2	protein_coding	Intergenic	.	.	Alu	0.181818
2	28764206	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0625
2	28764268	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.105263
2	28764326	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.235294
2	28764340	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.238095
2	28764349	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.235294
2	28764439	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0909091
2	28764744	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.117647
2	28764764	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.111111
2	28764766	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.105263
2	28764770	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.111111
2	28764774	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.153846
2	28784733	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0625
2	28784773	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0571429
2	28784814	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0666667
2	28784852	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.136364
2	28786584	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.228571
2	28786641	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0512821
2	28786654	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.318182
2	28792414	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0344828
2	28792466	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0352941
2	28792467	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0229885
17	28797063	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.166667
17	28797100	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.166667
22	28797589	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.25
22	28797613	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.166667
22	28797660	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.416667
22	28798446	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0461538
22	28798516	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0576923
22	28798536	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0784314
22	28798551	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0689655
22	28798848	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0677966
22	28798863	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0517241
17	28831050	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.166667
17	28831133	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.181818
17	28831198	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.3
2	28857071	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.6
2	28857116	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.727273
2	28857207	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.181818
16	28862753	A->G	-	ENSG00000178188	SH2B1	protein_coding	Intergenic	.	.	Alu	0.105263
2	28865972	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.285714
8	28909066	A->G	+	ENSG00000147421	HMBOX1	protein_coding	Intergenic	.	.	Alu	0.2
16	28918244	A->G	-	ENSG00000177548	RABEP2	protein_coding	Intergenic	.	.	Alu	0.166667
17	28934800	A->G	-	ENSG00000109118	PHF12	protein_coding	Intergenic	.	.	Alu	0.133333
8	28952334	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.222222
8	28952351	A->G	+	ENSG00000259196	HMBOX1-IT1	sense_intronic	Intergenic	.	.	Alu	0.857143
16	28957868	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.111111
16	28957877	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.117647
16	28958085	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.2
16	28958172	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.133333
16	28958186	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.176471
16	28958188	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.3125
16	28958221	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.130435
16	28958241	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.285714
16	28958248	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.285714
16	29119897	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.466667
16	29119907	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.461538
16	29119953	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.846154
16	29119954	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.923077
16	29119995	A->G	+	ENSG00000284649	AC009093.8	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
1	29173502	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.411765
1	29173505	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.111111
1	29173549	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.388889
1	29173561	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.125
1	29173565	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.217391
1	29173574	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.611111
1	29173613	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.166667
1	29173626	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.142857
1	29173627	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.266667
1	29173628	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.4
1	29173676	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.111111
1	29173704	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.357143
1	29173729	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.153846
1	29177378	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.0487805
1	29177419	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.0566038
22	29286477	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.133333
22	29286500	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.1875
22	29286501	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.166667
22	29286504	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.117647
22	29286560	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.0909091
22	29286607	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.153846
22	29286608	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.166667
22	29287944	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.3
12	29319263	A->G	-	ENSG00000064763	FAR2	protein_coding	Intergenic	.	.	Alu	0.230769
12	29330195	A->G	-	ENSG00000064763	FAR2	protein_coding	Intergenic	.	.	Alu	0.133333
16	29391058	A->G	+	ENSG00000254206	NPIPB11	protein_coding	Intergenic	.	.	Alu	0.230769
16	29392635	A->G	+	ENSG00000254206	NPIPB11	protein_coding	Intergenic	.	.	Alu	0.3
16	29410741	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
16	29424226	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
16	29424240	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
16	29424241	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
13	29588606	A->G	-	ENSG00000139514	SLC7A1	protein_coding	Intergenic	.	.	Alu	0.136364
13	29588642	A->G	-	ENSG00000139514	SLC7A1	protein_coding	Intergenic	.	.	Alu	0.214286
17	29741681	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.107143
17	29741712	A->G	-	ENSG00000141298	SSH2	protein_coding	Intergenic	.	.	Alu	0.0952381
13	29820323	A->G	-	ENSG00000122042	UBL3	protein_coding	Intergenic	.	.	Alu	0.105263
22	29945535	A->G	+	ENSG00000100330	MTMR3	protein_coding	Intergenic	.	.	Alu	0.2
22	29945649	A->G	+	ENSG00000100330	MTMR3	protein_coding	Intergenic	.	.	Alu	0.176471
8	30099406	A->G	+	ENSG00000104660	LEPROTL1	protein_coding	Intergenic	.	.	Alu	0.5
8	30101547	A->G	+	ENSG00000104660	LEPROTL1	protein_coding	Intergenic	.	.	Alu	0.181818
17	30132295	A->G	+	ENSG00000126653	NSRP1	protein_coding	Intergenic	.	.	Alu	0.5
7	30141295	A->G	+	ENSG00000230751	AC007036.2	sense_intronic	Intergenic	.	.	Alu	0.166667
7	30141300	A->G	+	ENSG00000230751	AC007036.2	sense_intronic	Intergenic	.	.	Alu	0.166667
7	30141656	A->G	+	ENSG00000180354	MTURN	protein_coding	Intergenic	.	.	Alu	0.4
7	30141662	A->G	+	ENSG00000180354	MTURN	protein_coding	Intergenic	.	.	Alu	0.4
8	30167479	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.181818
8	30167495	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.153846
8	30178244	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.272727
16	30252471	A->G	-	ENSG00000198064	NPIPB13	protein_coding	Intergenic	.	.	Alu	0.133333
7	30316027	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.235294
7	30316039	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.409091
7	30316102	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.08
7	30316103	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.24
7	30316167	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.125
7	30316168	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.391304
7	30316173	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.08
7	30316208	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.111111
7	30316209	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.176471
7	30316217	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.111111
7	30373818	A->G	+	ENSG00000281593	AC006978.2	protein_coding	Intergenic	.	.	Alu	0.111111
17	30485632	A->G	+	ENSG00000108587	GOSR1	protein_coding	Intergenic	.	.	Alu	0.5
17	30486465	A->G	+	ENSG00000108587	GOSR1	protein_coding	Intergenic	.	.	Alu	0.230769
17	30486469	A->G	+	ENSG00000108587	GOSR1	protein_coding	Intergenic	.	.	Alu	0.25
17	30486481	A->G	+	ENSG00000108587	GOSR1	protein_coding	Intergenic	.	.	Alu	0.176471
7	30622922	A->G	+	ENSG00000106105	GARS	protein_coding	Intergenic	.	.	Alu	0.181818
7	30622923	A->G	+	ENSG00000106105	GARS	protein_coding	Intergenic	.	.	Alu	0.181818
7	30623021	A->G	+	ENSG00000106105	GARS	protein_coding	Intergenic	.	.	Alu	0.3
7	30623080	A->G	+	ENSG00000106105	GARS	protein_coding	Intergenic	.	.	Alu	0.105263
17	30714032	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
17	30720576	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
17	30740605	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
1	30752939	A->G	-	ENSG00000162511	LAPTM5	protein_coding	Intergenic	.	.	Alu	0.105263
1	30752978	A->G	-	ENSG00000162511	LAPTM5	protein_coding	Intergenic	.	.	Alu	0.266667
17	30764098	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
8	30809064	A->G	-	ENSG00000104695	PPP2CB	protein_coding	Intergenic	.	.	Alu	0.166667
17	30975088	A->G	+	ENSG00000181481	RNF135	protein_coding	Intergenic	.	.	Alu	0.2
1	31015470	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.111111
1	31015474	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.176471
1	31015480	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	1
1	31025619	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.363636
1	31025623	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.166667
1	31025652	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.142857
1	31025667	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.25
1	31025694	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.157895
1	31025744	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.166667
1	31039361	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.266667
1	31039490	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.142857
1	31039495	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.142857
1	31048747	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
8	31070773	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.125
8	31070790	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.153846
8	31070795	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.125
8	31070861	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0952381
8	31070869	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0740741
8	31070899	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.384615
8	31070925	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0606061
8	31070926	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.333333
8	31070931	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0833333
8	31072568	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.166667
8	31075621	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.12
8	31075661	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.1
8	31075672	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0606061
16	31122003	A->G	+	ENSG00000103510	KAT8	protein_coding	Intergenic	.	.	Alu	0.3
16	31122692	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.25
16	31122694	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.333333
16	31122707	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.2
16	31122734	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.363636
16	31122760	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.8
16	31122802	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.3
16	31123286	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.5625
16	31123310	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.5
16	31123342	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.266667
16	31123343	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.142857
16	31123346	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.428571
16	31123356	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.285714
16	31123362	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.307692
16	31123406	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.5
16	31123443	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.294118
16	31123530	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.3125
16	31123560	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.230769
16	31123641	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.291667
16	31123646	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.192308
16	31123668	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intergenic	.	.	Alu	0.285714
16	31124939	A->G	+	ENSG00000103510	KAT8	protein_coding	Intergenic	.	.	Alu	0.153846
14	31137168	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.153846
14	31137207	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.181818
14	31137268	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.8
14	31137269	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.2
14	31137664	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.4
14	31142700	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.363636
12	31305971	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.2
12	31309798	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.157895
12	31309830	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.166667
12	31309833	A->G	-	ENSG00000139146	SINHCAF	protein_coding	Intergenic	.	.	Alu	0.2
22	31331546	A->G	-	ENSG00000100105	PATZ1	protein_coding	Intergenic	.	.	Alu	0.636364
10	31348302	A->G	+	ENSG00000148516	ZEB1	protein_coding	Intergenic	.	.	Alu	0.4
10	31348309	A->G	+	ENSG00000148516	ZEB1	protein_coding	Intergenic	.	.	Alu	0.181818
16	31452253	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.272727
16	31452255	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.2
3	31542865	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.357143
3	31542866	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.266667
20	31563571	A->G	+	ENSG00000235313	HM13-IT1	sense_intronic	Intergenic	.	.	Alu	0.5
20	31563576	A->G	+	ENSG00000235313	HM13-IT1	sense_intronic	Intergenic	.	.	Alu	0.666667
20	31563955	A->G	+	ENSG00000235313	HM13-IT1	sense_intronic	Intergenic	.	.	Alu	0.272727
20	31563956	A->G	+	ENSG00000235313	HM13-IT1	sense_intronic	Intergenic	.	.	Alu	0.2
20	31564313	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.166667
20	31564438	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.2
20	31564977	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0740741
20	31564978	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.103448
20	31565045	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0625
20	31565250	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.222222
20	31565318	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.117647
20	31565358	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.117647
14	31612425	A->G	+	ENSG00000151413	NUBPL	protein_coding	Intergenic	.	.	Alu	0.363636
14	31612431	A->G	+	ENSG00000151413	NUBPL	protein_coding	Intergenic	.	.	Alu	0.153846
22	31638714	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.166667
22	31638733	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.125
22	31638910	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.117647
22	31638932	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.333333
22	31638978	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	1
22	31639070	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.357143
22	31639090	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.2
22	31639105	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.55
22	31640673	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.307692
22	31640718	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.166667
22	31640741	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.133333
22	31640745	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.125
22	31640763	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.2
22	31641025	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.142857
22	31641026	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.166667
22	31641052	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0909091
6	31752292	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.2
6	31752468	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.2
6	31752476	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.2
6	31752533	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.166667
6	31752534	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.166667
6	31752538	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.461538
6	31752599	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.352941
2	31906039	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0606061
2	31906058	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0625
2	31906065	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.133333
2	31906069	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.333333
2	31906084	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.44
2	31906105	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0967742
2	31906110	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.518519
2	31906149	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.263158
2	31906150	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.368421
2	31906151	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.285714
2	31906171	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.52381
2	31906186	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	31906242	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.380952
1	31922752	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.285714
1	31922821	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.230769
1	31922888	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.2
1	31923214	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.153846
2	31930680	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	31930713	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.192308
2	31930714	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0769231
2	31930718	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.130435
2	31930774	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	31930778	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31930784	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.428571
2	31930854	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.3
2	31930926	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31990549	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	31990628	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.3
2	31990702	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.266667
2	31993996	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31994046	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	31994058	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.5
2	31994093	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	31999428	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.5
2	31999561	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	31999575	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.75
2	31999587	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	31999613	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.111111
2	31999618	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.538462
2	31999639	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.785714
2	31999938	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.583333
2	31999988	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.833333
2	31999998	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	32000067	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0909091
2	32000153	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	32000167	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	32000369	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	32000647	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.125
1	32020351	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.181818
1	32053010	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.727273
1	32053012	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.5
1	32053032	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.4
18	32056430	A->G	+	ENSG00000101695	RNF125	protein_coding	Intergenic	.	.	Alu	0.153846
1	32065736	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.142857
1	32065737	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.214286
1	32065738	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.214286
1	32065795	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.166667
1	32066186	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.181818
1	32066192	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.357143
1	32066197	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.153846
1	32066218	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.5
18	32098733	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	1
18	32120975	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.2
18	32120976	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.2
18	32120993	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.2
18	32121050	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.2
1	32122701	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.15
1	32122731	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.133333
1	32122732	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.2
1	32123780	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.181818
1	32123781	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.25
1	32123786	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.230769
1	32123825	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.142857
1	32143167	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.166667
1	32143225	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.153846
1	32143248	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.6
1	32143327	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.470588
1	32143328	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.941176
1	32143420	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.5
1	32143446	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.2
5	32152326	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.181818
5	32152638	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.2
5	32165028	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.166667
5	32165044	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.166667
5	32165048	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.384615
5	32165082	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.2
5	32165093	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.272727
5	32165172	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.25
2	32300319	A->G	+	ENSG00000119820	YIPF4	protein_coding	Intergenic	.	.	Alu	0.153846
2	32300327	A->G	+	ENSG00000119820	YIPF4	protein_coding	Intergenic	.	.	Alu	0.142857
10	32300488	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.230769
10	32336072	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.2
10	32336136	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.133333
10	32352183	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.3
10	32355677	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.0666667
10	32355682	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.222222
10	32355716	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.307692
10	32355722	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.363636
10	32357917	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.125
10	32357920	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.2
10	32357966	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.133333
10	32357983	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.0571429
10	32357992	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.388889
10	32358011	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.0769231
10	32358048	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.277778
10	32358049	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.333333
10	32358127	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.277778
20	32361455	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.5
20	32361476	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.153846
10	32364100	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.111111
10	32364131	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.115385
10	32364152	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.166667
10	32364153	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.1
10	32364260	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.16
10	32364261	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.0769231
2	32367695	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.2
2	32371048	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.578947
2	32371092	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.181818
2	32371145	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.190476
1	32371383	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.333333
2	32371439	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.153846
2	32371444	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.230769
2	32371455	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.142857
2	32371474	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.153846
2	32371475	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.142857
2	32371492	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.375
1	32373659	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.142857
1	32373812	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.235294
20	32375406	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.25
17	32391945	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
17	32392339	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
17	32392434	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
17	32392544	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
17	32392548	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
17	32392574	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
17	32392575	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
17	32392616	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
20	32407224	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.272727
20	32407229	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.2
5	32432853	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.133333
17	32450803	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.125
17	32450820	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.181818
17	32450844	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.142857
17	32451050	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.142857
17	32451054	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.285714
2	32455538	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0526316
17	32461217	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.6
2	32462695	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.25
2	32462772	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.153846
2	32462778	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.615385
2	32462780	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.153846
15	32468276	A->G	-	.	.	.	Intergenic	.	.	Alu	0.176471
2	32520678	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.5
2	32520683	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.727273
2	32520690	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.181818
2	32520732	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.214286
2	32520756	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.75
3	32533985	A->G	-	ENSG00000144635	DYNC1LI1	protein_coding	Intergenic	.	.	Alu	0.2
1	32547728	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.384615
1	32547879	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.272727
1	32547905	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.1875
1	32547954	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	1
1	32548013	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.3
2	32553491	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.133333
9	32557608	A->G	-	ENSG00000235453	SMIM27	protein_coding	Intergenic	.	.	Alu	0.153846
1	32567607	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.2
1	32583219	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.2
13	32665468	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.142857
13	32665474	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.538462
1	32676150	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.363636
1	32676349	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.133333
1	32676356	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.2
1	32676385	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.285714
1	32676423	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.583333
1	32676463	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.0909091
1	32676489	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.45
1	32676490	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.380952
1	32676516	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.117647
1	32676535	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.0952381
1	32676822	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.133333
1	32676868	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.181818
1	32676895	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.2
12	32702057	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.5
12	32702058	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.615385
12	32723508	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.142857
3	32732676	A->G	+	ENSG00000182973	CNOT10	protein_coding	Intergenic	.	.	Alu	0.117647
7	32758802	A->G	+	ENSG00000229358	DPY19L1P1	unprocessed_pseudogene	Intergenic	.	.	Alu	0.214286
1	32785654	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.153846
1	32785715	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.115385
1	32785720	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.111111
1	32785721	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.111111
1	32785743	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.157895
1	32785791	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.583333
1	32790087	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.647059
1	32790088	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.588235
1	32790129	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.384615
1	32803050	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.117647
1	32803107	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.125
1	32803115	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.230769
1	32803121	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.153846
1	32803177	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.153846
1	32803208	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.133333
1	32803246	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.238095
1	32803250	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.136364
11	32924480	A->G	+	ENSG00000060749	QSER1	protein_coding	Intergenic	.	.	Alu	0.3
9	33027432	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.272727
9	33027791	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.0952381
9	33027946	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.272727
11	33265496	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	33265518	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	33265572	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.157895
11	33265573	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	33265588	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.2
11	33265647	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	33265693	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0512821
11	33265698	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.102564
11	33265723	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0714286
11	33265730	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.107143
11	33265898	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0571429
11	33265933	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.05
11	33265934	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.05
11	33265963	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.137931
11	33267625	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.25
11	33267635	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.454545
11	33267703	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.8
11	33268091	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.333333
11	33268117	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.357143
11	33268136	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	33268332	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.222222
11	33268353	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.4
11	33268363	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.157895
11	33268381	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.178571
11	33268385	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	33268470	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	33268500	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.208333
11	33268516	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	33270760	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.272727
11	33273317	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.130435
11	33273319	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.130435
11	33273388	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	33273394	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	33273398	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	33279143	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	33279154	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	33279167	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	33279171	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	33279203	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.136364
11	33279229	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	33279270	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33282563	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.307692
11	33282604	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	33282611	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.363636
6	33302221	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.08
6	33302608	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.153846
9	33315771	A->G	+	ENSG00000086102	NFX1	protein_coding	Intergenic	.	.	Alu	0.272727
3	33434375	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.15
3	33434377	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.111111
3	33434426	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.107143
3	33434435	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.290323
3	33434436	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0666667
3	33434449	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.517241
3	33434462	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0769231
3	33434465	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.1
3	33434500	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0689655
3	33434537	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0606061
3	33434559	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.136364
3	33434784	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0869565
3	33434880	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0606061
3	33434890	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.277778
3	33434891	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0555556
3	33434951	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	33434960	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.15
21	33503335	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
21	33525127	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.117647
21	33525142	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.153846
21	33525152	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.130435
21	33525164	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.130435
21	33525493	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.6
21	33526136	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.214286
21	33526231	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.416667
21	33526292	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.2
21	33526295	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.5
21	33526375	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.181818
21	33526416	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.636364
21	33526423	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.153846
21	33526469	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.0952381
3	33547956	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0645161
3	33548035	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0869565
3	33548442	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0425532
3	33549058	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.0625
21	33594226	A->G	-	ENSG00000205758	CRYZL1	protein_coding	Intergenic	.	.	Alu	0.3
3	33696594	A->G	-	ENSG00000163539	CLASP2	protein_coding	Intergenic	.	.	Alu	0.133333
9	33824449	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.4
9	33824729	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.363636
9	33828182	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.2
9	33828222	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.2
11	33877527	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.166667
9	33990777	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.6
9	33990804	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.230769
9	33990813	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.166667
9	33990819	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.230769
20	33998940	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.166667
20	33999010	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.166667
20	34029252	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.181818
20	34029310	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.166667
20	34029330	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.176471
11	34089178	A->G	+	ENSG00000135387	CAPRIN1	protein_coding	Intergenic	.	.	Alu	0.3
11	34122097	A->G	+	ENSG00000135372	NAT10	protein_coding	Intergenic	.	.	Alu	0.181818
5	34182993	A->G	-	ENSG00000215158	AC138409.2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0952381
9	34183356	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.461538
9	34183507	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.2
9	34192239	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.1875
9	34192262	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.384615
19	34192420	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.230769
19	34192425	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.181818
19	34192459	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	1
19	34192465	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.636364
19	34192510	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.3
9	34192687	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.2
19	34192737	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.9
19	34192793	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.8
19	34192850	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.1875
19	34192858	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.769231
19	34192859	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	1
19	34192864	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.461538
19	34192885	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.266667
19	34192905	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.176471
19	34192918	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.190476
19	34192920	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0952381
19	34202373	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34202784	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.533333
19	34202794	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.214286
19	34203598	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0833333
19	34203613	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0714286
19	34203614	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.206897
19	34203683	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.36
19	34203688	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.148148
19	34203728	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0714286
19	34204874	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.307692
19	34204989	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.153846
19	34205052	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.133333
19	34205064	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.2
19	34205232	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0769231
19	34205322	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0833333
19	34205355	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.08
19	34205366	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.148148
19	34205407	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.103448
19	34206614	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.125
9	34228363	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.181818
20	34364980	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0555556
20	34365048	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0930233
20	34365115	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.179487
20	34365495	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34365532	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.153846
20	34365544	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.4
20	34365619	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.384615
20	34366317	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.107143
20	34366460	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.1
20	34366472	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0869565
20	34370382	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.2
20	34370592	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.130435
20	34370608	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.09375
20	34378285	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0714286
20	34378309	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0714286
20	34378311	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0769231
20	34378351	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0555556
20	34378353	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0571429
20	34378421	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0526316
20	34378425	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0714286
6	34385849	A->G	-	ENSG00000272325	NUDT3	protein_coding	Intergenic	.	.	Alu	0.3
6	34385866	A->G	-	ENSG00000272325	NUDT3	protein_coding	Intergenic	.	.	Alu	0.272727
20	34410247	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.111111
20	34410248	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.105263
20	34410316	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.105263
6	34415764	A->G	-	ENSG00000270800	RPS10-NUDT3	protein_coding	Intergenic	.	.	Alu	0.166667
20	34431151	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.333333
20	34431155	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34431189	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.307692
20	34431348	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34431776	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34431785	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34431854	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.368421
20	34431923	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.08
20	34431924	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0740741
20	34431950	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34432004	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34434077	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34436893	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.333333
20	34436894	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
19	34439651	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.1
19	34440689	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.142857
19	34440695	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.111111
19	34440725	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.133333
19	34440726	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.142857
19	34440732	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.125
19	34440837	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.111111
19	34440838	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.111111
19	34440913	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.105263
19	34440914	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.1
19	34441980	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.2
19	34441993	A->G	+	ENSG00000126261	UBA2	protein_coding	Intergenic	.	.	Alu	0.125
20	34451169	A->G	+	ENSG00000231795	ITCH-IT1	sense_intronic	Intergenic	.	.	Alu	0.153846
14	34537093	A->G	-	ENSG00000129518	EAPP	protein_coding	Intergenic	.	.	Alu	0.133333
6	34758867	A->G	+	ENSG00000124562	SNRPC	protein_coding	Intergenic	.	.	Alu	0.333333
6	34808223	A->G	+	ENSG00000065060	UHRF1BP1	protein_coding	Intergenic	.	.	Alu	0.2
21	34853945	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.210526
21	34863692	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.0425532
21	34863749	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.09375
21	34863755	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.236842
21	34961955	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.263158
21	34962031	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.214286
21	34962110	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.133333
21	34962126	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.153846
15	34967108	A->G	-	ENSG00000021776	AQR	protein_coding	Intergenic	.	.	Alu	0.142857
10	35011280	A->G	-	ENSG00000108094	CUL2	protein_coding	Intergenic	.	.	Alu	0.2
20	35028293	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.166667
20	35031315	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.222222
20	35031491	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.153846
20	35032568	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.133333
20	35032744	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.2
20	35032751	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.545455
9	35047391	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
18	35055874	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.166667
17	35059065	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.2
18	35063738	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0833333
18	35063739	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.148148
18	35063791	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.1
18	35063806	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.526316
18	35063877	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0666667
18	35063905	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.103448
18	35063968	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0666667
18	35064088	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.142857
18	35064090	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.190476
18	35064130	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.105263
17	35076088	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.681818
17	35076154	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.1
17	35076170	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.142857
17	35076217	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.166667
17	35076221	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.133333
17	35076261	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.214286
17	35076437	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.307692
17	35076451	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.181818
9	35087602	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
9	35087623	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
14	35098283	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.0909091
14	35098452	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.190476
14	35098458	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.0952381
14	35098515	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.117647
14	35109276	A->G	-	ENSG00000151327	FAM177A1	protein_coding	Intergenic	.	.	Alu	0.153846
14	35115332	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.2
14	35115437	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.3125
14	35115441	A->G	-	ENSG00000092020	PPP2R3C	protein_coding	Intergenic	.	.	Alu	0.444444
22	35266774	A->G	+	ENSG00000100281	HMGXB4	protein_coding	Intergenic	.	.	Alu	0.2
10	35411471	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.133333
6	35683576	A->G	-	ENSG00000096060	FKBP5	protein_coding	Intergenic	.	.	Alu	0.3
20	35725775	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.03
20	35726243	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.181818
20	35727865	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.142857
9	35765536	A->G	+	.	.	.	Intergenic	.	.	Alu	0.538462
9	35765554	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
19	35770622	A->G	+	ENSG00000167595	PROSER3	protein_coding	Intergenic	.	.	Alu	0.4
19	35770623	A->G	+	ENSG00000167595	PROSER3	protein_coding	Intergenic	.	.	Alu	0.2
19	35770710	A->G	+	ENSG00000167595	PROSER3	protein_coding	Intergenic	.	.	Alu	0.9
20	35775502	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.117647
20	35775572	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.333333
20	35775602	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.117647
20	35775603	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.235294
20	35775604	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.411765
20	35775633	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.529412
20	35775634	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.176471
20	35775674	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.2
20	35775675	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.8
7	35812076	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.3
1	35813555	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.4
1	35813556	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.4
1	35813888	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.15
1	35813928	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.0952381
7	35814818	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.166667
7	35814854	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.0952381
7	35814920	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.0689655
1	35816546	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35816589	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.125
1	35816623	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35816634	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.157895
1	35816637	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.105263
1	35816639	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.105263
1	35816643	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.1
1	35816656	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.391304
1	35816727	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.263158
1	35816781	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.153846
1	35816788	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.181818
1	35818448	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.2
1	35819327	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.470588
1	35819334	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35819354	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.176471
1	35819513	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.117647
1	35819550	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.285714
1	35819551	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.461538
1	35819552	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.5
1	35819612	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.8
1	35819622	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.2
1	35819674	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.1875
1	35819678	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.166667
17	35827221	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.105263
17	35827323	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.153846
17	35827518	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.166667
17	35827559	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.111111
17	35827585	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.08
17	35827586	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.166667
17	35827662	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.125
1	35829582	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.363636
1	35829769	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.272727
1	35829829	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.384615
1	35829905	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.166667
1	35829994	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.25
1	35830016	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.0952381
1	35830029	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.185185
1	35830070	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.272727
1	35830088	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.136364
1	35831212	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35833103	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.2
1	35833181	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.2
1	35833199	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35833211	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
6	35838063	A->G	-	ENSG00000096063	SRPK1	protein_coding	Intergenic	.	.	Alu	0.538462
6	35838064	A->G	-	ENSG00000096063	SRPK1	protein_coding	Intergenic	.	.	Alu	0.642857
6	35838065	A->G	-	ENSG00000096063	SRPK1	protein_coding	Intergenic	.	.	Alu	0.133333
6	35838073	A->G	-	ENSG00000096063	SRPK1	protein_coding	Intergenic	.	.	Alu	0.142857
7	35888618	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.428571
7	35888619	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.142857
7	35888634	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.117647
7	35888658	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.125
7	35888664	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.235294
7	35888699	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.111111
7	35888713	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.105263
7	35888722	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.142857
7	35888740	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.25
7	35888777	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.0952381
18	36016290	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.4
18	36019205	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.1875
18	36019246	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.888889
18	36019272	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.222222
18	36019302	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.357143
18	36019312	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.285714
18	36019317	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.533333
18	36019374	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.333333
18	36019379	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	1
18	36019380	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	1
18	36019402	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.272727
6	36030433	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.1875
6	36030576	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.142857
6	36035968	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.3
6	36035969	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.166667
6	36037724	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.0833333
6	36037858	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.0833333
6	36037868	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.115385
6	36093679	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.44186
1	36255513	A->G	+	ENSG00000054118	THRAP3	protein_coding	Intergenic	.	.	Alu	0.2
1	36255514	A->G	+	ENSG00000054118	THRAP3	protein_coding	Intergenic	.	.	Alu	0.2
1	36255519	A->G	+	ENSG00000054118	THRAP3	protein_coding	Intergenic	.	.	Alu	0.181818
9	36371727	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.166667
9	36371731	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.181818
22	36375820	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.5
22	36376099	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.0740741
22	36376160	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.125
9	36391746	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.25
9	36391752	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.266667
21	36396209	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.285714
21	36396220	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.357143
9	36451534	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.2
9	36454685	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.181818
1	36476745	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0272109
1	36476768	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0542636
1	36476785	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0225564
1	36476825	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0458716
1	36476869	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0543478
1	36476878	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.136986
1	36476916	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0530973
1	36476919	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.133929
1	36476943	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0526316
1	36477897	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.5
9	36480800	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.111111
9	36480801	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.111111
9	36481218	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.166667
9	36482235	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.272727
6	36498726	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.0952381
6	36541914	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.0666667
6	36541925	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.0833333
6	36541926	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.111111
6	36541993	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.133333
6	36542039	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.117647
6	36542061	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.333333
6	36542086	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.230769
6	36542108	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.125
17	36558156	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.181818
17	36558185	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.384615
17	36559038	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.25
17	36559042	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.25
17	36559100	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.125
17	36562695	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.285714
17	36562742	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.2
17	36562749	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.222222
17	36562750	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.176471
17	36562818	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.222222
17	36562850	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.105263
17	36562886	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.25
17	36562891	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.6
17	36563119	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.133333
17	36563145	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.1
17	36563146	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.15
17	36566556	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.0833333
20	36575971	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.153846
20	36576067	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.136364
17	36576397	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.0666667
17	36576493	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.230769
20	36578158	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.142857
20	36578188	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.142857
20	36578211	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.133333
20	36578235	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.105263
20	36578236	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36578271	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.181818
20	36578293	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.153846
20	36578328	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36580550	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.333333
20	36580570	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.333333
20	36580583	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.117647
20	36580630	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.28
20	36580683	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.105263
20	36580689	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.15
20	36583832	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.117647
20	36583838	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.129032
20	36583847	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0714286
20	36583974	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0869565
20	36584024	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.166667
20	36585007	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.4
20	36585090	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36611225	A->G	+	ENSG00000101084	RAB5IF	protein_coding	Intergenic	.	.	Alu	0.6
20	36611355	A->G	+	ENSG00000101084	RAB5IF	protein_coding	Intergenic	.	.	Alu	0.8
19	36681562	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
19	36804483	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.263158
19	36804488	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.176471
19	36804569	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.125
7	36805637	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	36805747	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
19	36809196	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.6
19	36809262	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.181818
19	36809294	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.153846
19	36809316	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.3125
19	36809322	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.133333
19	36809326	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.466667
19	36809357	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.111111
19	36809358	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.176471
19	36828617	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.583333
19	36833988	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.4
19	36834175	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.363636
19	36834200	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.333333
5	36909925	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.2
5	36909926	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.2
5	36909955	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.111111
20	36913135	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.181818
20	36913850	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.272727
20	36913918	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.2
5	36968659	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.37037
5	36968665	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.0769231
5	36968675	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.269231
5	36968677	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.0714286
5	36968683	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.125
5	36968707	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.272727
20	37033750	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.333333
20	37033776	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.2
20	37033810	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.142857
20	37034079	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.230769
20	37085270	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.3
7	37092517	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0425532
3	37098455	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.214286
3	37098484	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.375
3	37098499	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	37098630	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.333333
3	37102551	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	37102556	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.105263
3	37102595	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.294118
3	37102596	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.411765
3	37102643	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.166667
2	37115334	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.153846
9	37161524	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.333333
9	37164347	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.181818
9	37164400	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.181818
9	37164402	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.416667
9	37164635	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.9375
9	37164643	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.722222
7	37200146	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.291667
7	37200147	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.318182
7	37200185	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.217391
7	37200189	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0833333
7	37200206	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.153846
7	37200212	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.714286
7	37200300	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.384615
7	37200308	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.266667
7	37200313	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.272727
7	37200318	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.5
5	37208077	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.142857
5	37208148	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.2
5	37208153	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
5	37208200	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.133333
5	37208217	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.352941
5	37208218	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.473684
5	37208421	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
5	37208529	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.363636
5	37208590	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.3
5	37215867	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.105263
5	37215939	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.333333
5	37215960	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
5	37215970	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37215987	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37215996	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.416667
5	37216030	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.3
5	37216055	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.6
5	37216109	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.125
5	37216110	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.105263
5	37216116	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.888889
5	37216300	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.5
5	37216326	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37216547	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
7	37227510	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
5	37238337	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.454545
2	37238340	A->G	+	ENSG00000003509	NDUFAF7	protein_coding	Intergenic	.	.	Alu	0.545455
2	37238403	A->G	+	ENSG00000003509	NDUFAF7	protein_coding	Intergenic	.	.	Alu	0.2
3	37246118	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0714286
3	37246187	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.08
3	37246201	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0967742
3	37253937	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.166667
3	37260379	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.1
3	37260392	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.176471
3	37260421	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.142857
3	37260475	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.111111
3	37260493	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.304348
3	37260587	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.153846
3	37260588	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.181818
3	37261064	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0689655
3	37261065	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0689655
3	37262273	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0952381
3	37262379	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0930233
3	37262386	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0625
3	37265906	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.8
3	37265946	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.272727
3	37265951	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.538462
3	37273923	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.105263
3	37273993	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0666667
3	37274002	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0740741
3	37274003	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.142857
3	37274463	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0606061
3	37274573	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0833333
3	37274638	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.153846
3	37274967	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.08
19	37328183	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.230769
19	37328184	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.153846
21	37372244	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0689655
21	37372321	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0434783
21	37372327	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.133333
21	37410544	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.230769
21	37410556	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.384615
21	37410564	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.285714
21	37410673	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.125
21	37410928	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0857143
21	37410941	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.40625
21	37410951	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0689655
21	37411102	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.28125
21	37411103	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.242424
21	37411233	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.428571
21	37411297	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.190476
21	37426647	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.05
21	37427130	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.756757
21	37427131	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.675676
21	37427186	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0338983
21	37427191	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0333333
21	37427210	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0377358
21	37427241	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.392857
21	37427245	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.793103
21	37427253	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0666667
21	37427257	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.121212
21	37427385	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.047619
21	37427386	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0638298
21	37427398	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0487805
21	37467466	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.25
4	37618517	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.0714286
4	37618942	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.0925926
4	37618977	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.0392157
4	37619017	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.108108
17	37622361	A->G	-	ENSG00000278053	DDX52	protein_coding	Intergenic	.	.	Alu	0.181818
4	37681625	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.153846
4	37681657	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.125
4	37681667	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.111111
4	37681708	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.2
4	37681711	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.133333
4	37681800	A->G	-	ENSG00000181826	RELL1	protein_coding	Intergenic	.	.	Alu	0.1875
6	37829311	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.105263
6	37829357	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.166667
6	37829416	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.153846
6	37829433	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.166667
6	37829439	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
6	37833679	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.333333
6	37833747	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.4
6	37842979	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
6	37843366	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.133333
6	37843372	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.181818
22	37857243	A->G	+	ENSG00000100129	EIF3L	protein_coding	Intergenic	.	.	Alu	0.2
6	37870178	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.235294
6	37870188	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.318182
6	37870234	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.0869565
6	37870346	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.105263
6	37870520	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.103448
6	37870549	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.117647
6	37870581	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.333333
6	37870732	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.761905
6	37870748	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.166667
6	37870753	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.25
6	37870797	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.352941
6	37870806	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.166667
6	37874395	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.133333
6	37884444	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.230769
8	37888913	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.166667
8	37892611	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.230769
8	37892670	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.153846
8	37893212	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.411765
8	37893213	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.25
8	37893269	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.181818
8	37893668	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.8
6	37934576	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
6	37934780	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
22	37946694	A->G	+	ENSG00000128346	C22orf23	protein_coding	Intergenic	.	.	Alu	0.181818
6	37976386	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.125
6	37976406	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.181818
6	37976504	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.25
10	38022402	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0952381
10	38022447	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.0869565
10	38022448	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.192308
10	38022492	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.444444
10	38022501	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.12
10	38022550	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.217391
10	38022599	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.25
10	38023093	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.2
10	38023901	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.153846
10	38031374	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.2
10	38031375	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.272727
10	38031495	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.1875
10	38031514	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.333333
3	38166671	A->G	+	ENSG00000172939	OXSR1	protein_coding	Intergenic	.	.	Alu	0.153846
8	38219756	A->G	+	.	.	.	Intergenic	.	.	Alu	0.8
8	38219760	A->G	+	.	.	.	Intergenic	.	.	Alu	1
8	38239105	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.6875
8	38239118	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.166667
8	38239140	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.0909091
8	38239141	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.190476
8	38239240	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.125
8	38239289	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.08
8	38239349	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.1
8	38239439	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.2
8	38239540	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.176471
8	38239544	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.176471
8	38239566	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.588235
8	38239572	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.25
8	38239576	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.214286
8	38239922	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.2
8	38239984	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.181818
8	38239997	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.214286
17	38255909	A->G	-	ENSG00000274487	AC244154.1	unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
8	38310731	A->G	-	ENSG00000147548	NSD3	protein_coding	Intergenic	.	.	Alu	0.166667
2	38356382	A->G	-	ENSG00000119787	ATL2	protein_coding	Intergenic	.	.	Alu	0.142857
2	38367892	A->G	-	ENSG00000119787	ATL2	protein_coding	Intergenic	.	.	Alu	0.272727
2	38368099	A->G	-	ENSG00000119787	ATL2	protein_coding	Intergenic	.	.	Alu	0.5
2	38368103	A->G	-	ENSG00000119787	ATL2	protein_coding	Intergenic	.	.	Alu	0.3
8	38376564	A->G	-	ENSG00000147548	NSD3	protein_coding	Intergenic	.	.	Alu	0.153846
8	38462741	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.25
8	38462768	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.153846
8	38462786	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.1875
8	38463043	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.272727
6	38563849	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.3
6	38563920	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.8
22	38711722	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.2
22	38711723	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.272727
22	38711758	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.142857
8	38815926	A->G	+	ENSG00000147526	TACC1	protein_coding	Intergenic	.	.	Alu	0.133333
20	38817950	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.25
8	38818088	A->G	+	ENSG00000147526	TACC1	protein_coding	Intergenic	.	.	Alu	0.285714
8	38818150	A->G	+	ENSG00000147526	TACC1	protein_coding	Intergenic	.	.	Alu	0.157895
19	38844936	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.0625
19	38844958	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.238095
19	38844997	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.142857
19	38844999	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.0714286
20	38851977	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38884800	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38884810	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.2
20	38885145	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.166667
1	38993710	A->G	+	ENSG00000174574	AKIRIN1	protein_coding	Intergenic	.	.	Alu	0.111111
1	39030285	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.2
1	39030584	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.416667
1	39044187	A->G	+	.	.	.	Intergenic	.	.	Alu	0.411765
1	39044299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
1	39044305	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
1	39044306	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
5	39050451	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intergenic	.	.	Alu	0.0909091
5	39050466	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intergenic	.	.	Alu	0.0952381
5	39050469	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intergenic	.	.	Alu	0.0909091
3	39058996	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.2
3	39059025	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.192308
2	39097655	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.125
2	39097656	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.08
2	39111764	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.166667
2	39111797	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.130435
2	39111868	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.25
2	39111888	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.25
2	39112436	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.388889
2	39112442	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.235294
2	39113288	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.333333
2	39113305	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.384615
2	39113315	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.157895
2	39113329	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.1
2	39113406	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.181818
2	39115553	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.111111
2	39115631	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.111111
2	39115636	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.111111
2	39115637	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0740741
2	39115646	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.3
2	39115664	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.225806
2	39115687	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.107143
2	39115697	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.32
4	39116976	A->G	+	ENSG00000109790	KLHL5	protein_coding	Intergenic	.	.	Alu	0.8
4	39117174	A->G	+	ENSG00000109790	KLHL5	protein_coding	Intergenic	.	.	Alu	0.7
14	39178410	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.2
14	39178439	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.3125
14	39178837	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.181818
21	39243521	A->G	-	ENSG00000185658	BRWD1	protein_coding	Intergenic	.	.	Alu	0.2
21	39243566	A->G	-	ENSG00000185658	BRWD1	protein_coding	Intergenic	.	.	Alu	0.2
17	39250054	A->G	-	ENSG00000265460	AC015910.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.25
17	39250078	A->G	-	ENSG00000265460	AC015910.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
17	39250145	A->G	-	ENSG00000265460	AC015910.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.3
17	39286980	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.142857
19	39334181	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.181818
19	39335030	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.2
22	39356122	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.333333
22	39356128	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.5
18	39382793	A->G	-	ENSG00000267374	AC016205.1	lincRNA	Intergenic	.	.	Alu	0.307692
18	39382819	A->G	-	ENSG00000267374	AC016205.1	lincRNA	Intergenic	.	.	Alu	0.153846
18	39382845	A->G	-	ENSG00000267374	AC016205.1	lincRNA	Intergenic	.	.	Alu	0.181818
17	39387353	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.166667
17	39387358	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.3
17	39387670	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.2
17	39387797	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.181818
17	39394670	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.117647
17	39394689	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.210526
19	39491447	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intergenic	.	.	Alu	0.2
17	39504630	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.166667
17	39504728	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.2
17	39504781	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.2
17	39559930	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.153846
17	39559932	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.166667
4	39724711	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39724712	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.583333
4	39725125	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.153846
4	39725126	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.214286
4	39725131	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.153846
4	39725148	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.285714
4	39725152	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.866667
4	39725156	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.266667
4	39725227	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.157895
4	39725230	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.157895
4	39725236	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.117647
4	39725237	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.25
4	39725244	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.105263
4	39725256	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39725262	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.117647
4	39725743	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.217391
4	39725782	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0869565
4	39725784	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.15
4	39742955	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39744813	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39748538	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.235294
4	39748542	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0606061
4	39759912	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.125
4	39759921	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.133333
4	39759927	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39759942	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.230769
4	39760011	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.153846
4	39760014	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.285714
4	39760015	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.285714
4	39760029	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.105263
4	39760056	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.111111
4	39760626	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39768260	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39768302	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.272727
4	39768311	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.428571
4	39768396	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1875
4	39768397	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.235294
4	39768591	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3
4	39768617	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39768634	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.214286
4	39768656	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.272727
4	39772302	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.545455
4	39772358	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39772359	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.4
4	39772454	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.4
4	39772460	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3
4	39774106	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.3125
4	39774183	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39774189	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.117647
4	39774193	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39774258	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39774352	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.133333
4	39774353	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.125
4	39774492	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.25
4	39774570	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39836946	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.176471
4	39872301	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.210526
4	39872314	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.222222
4	39872315	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.266667
4	39895856	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.153846
4	39896127	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.25
4	39896187	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.3125
4	39896207	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.111111
4	39896269	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.230769
4	39896318	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.5
4	39896521	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.0833333
4	39896574	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.76
4	39896595	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.133333
4	39896617	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.2
4	39896618	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.2
4	39896644	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.272727
4	39915449	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.181818
4	39915484	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.3
4	39915654	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.25
4	39952791	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.3
4	39952937	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.214286
4	39970891	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.166667
4	39970923	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.181818
4	39970975	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.125
22	40048337	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.1
22	40048338	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.210526
22	40048430	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.173913
22	40048437	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0869565
22	40048482	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0909091
22	40048493	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.157895
22	40048864	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.181818
22	40048896	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.153846
22	40056530	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40056584	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.142857
22	40072644	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.142857
22	40072725	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0952381
22	40073930	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.357143
22	40073990	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.2
4	40081991	A->G	+	ENSG00000078177	N4BP2	protein_coding	Intergenic	.	.	Alu	0.181818
22	40098131	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.4
22	40098307	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.230769
22	40130594	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.142857
22	40130604	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40130693	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.117647
22	40130703	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.3125
22	40130732	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.333333
22	40133695	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40144554	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.272727
22	40144564	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.2
22	40149407	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.4
22	40149413	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.153846
22	40151309	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.111111
22	40151377	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0869565
22	40151378	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.136364
22	40154720	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.2
22	40163267	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.1
22	40163348	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.181818
1	40185121	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.384615
1	40185331	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.5
1	40185404	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.285714
1	40214789	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.307692
1	40214843	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.153846
1	40215648	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.0588235
1	40215650	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.117647
1	40215655	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.1
4	40226379	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.125
4	40229387	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.2
4	40229397	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.25
4	40229523	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.142857
4	40229586	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.25
1	40275496	A->G	+	ENSG00000084073	ZMPSTE24	protein_coding	Intergenic	.	.	Alu	0.117647
1	40275497	A->G	+	ENSG00000084073	ZMPSTE24	protein_coding	Intergenic	.	.	Alu	0.176471
19	40276636	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.2
19	40276637	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.2
19	40276643	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.7
19	40276645	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.272727
22	40558020	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.125
22	40610175	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	40610185	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.2
22	40610251	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.230769
22	40615822	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.142857
22	40615864	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	40615873	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.272727
22	40620096	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.266667
22	40620155	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.3
13	40621001	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.272727
13	40621065	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.2
13	40636659	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.230769
13	40652340	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0789474
13	40652371	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0416667
13	40652415	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0434783
13	40652420	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0465116
13	40652431	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0930233
13	40652433	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.0731707
13	40652510	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.12
13	40652511	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.12
13	40656923	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.2
13	40656969	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.272727
13	40657461	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.125
13	40657471	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.2
13	40657507	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.105263
13	40657509	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.105263
13	40657512	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.210526
13	40657576	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.285714
13	40657607	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.1875
15	40693662	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.214286
1	40707783	A->G	+	ENSG00000066136	NFYC	protein_coding	Intergenic	.	.	Alu	0.363636
15	40750316	A->G	-	ENSG00000137824	RMDN3	protein_coding	Intergenic	.	.	Alu	0.166667
5	40778928	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.25
5	40778934	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.333333
5	40778994	A->G	-	ENSG00000132356	PRKAA1	protein_coding	Intergenic	.	.	Alu	0.2
13	40934558	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0645161
13	40997325	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.166667
13	40997366	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.12766
13	40997369	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0961538
13	40997396	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.037037
13	40997422	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0416667
13	40997428	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.04
13	40997493	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0625
13	40997528	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0588235
13	40997571	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0857143
13	40997625	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.25
13	40997664	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.1
1	40998211	A->G	+	ENSG00000171793	CTPS1	protein_coding	Intergenic	.	.	Alu	0.272727
13	41000438	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0576923
13	41000454	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0285714
15	41007279	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.2
15	41007320	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.357143
13	41012664	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.1875
13	41012757	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0714286
13	41012782	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0487805
13	41012813	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.121212
13	41012814	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0571429
15	41037725	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.133333
15	41037929	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.25
15	41038080	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.230769
15	41038087	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.25
15	41038117	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.142857
15	41038152	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.352941
15	41038153	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.111111
15	41038175	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.2
15	41038179	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.166667
15	41038198	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.181818
15	41038296	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.266667
20	41040659	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.2
20	41041214	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.315789
20	41041216	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.237288
20	41041289	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0235294
20	41041290	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0705882
20	41041291	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0731707
20	41041298	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.03125
20	41041299	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0744681
20	41041300	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0319149
20	41041303	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0337079
20	41041308	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0243902
20	41041323	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.091954
20	41041339	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0217391
20	41041356	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0804598
20	41041365	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.147727
20	41041970	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0909091
20	41041973	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0952381
20	41042009	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0769231
20	41042013	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.166667
20	41042050	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.36
20	41042054	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.291667
20	41042090	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.272727
20	41042130	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.1
13	41052043	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.117647
13	41055781	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.142857
13	41057249	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.166667
13	41057273	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.125
13	41057278	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.08
13	41057487	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0952381
13	41057499	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.142857
13	41057504	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.4
13	41078566	A->G	+	ENSG00000120688	WBP4	protein_coding	Intergenic	.	.	Alu	0.181818
13	41078777	A->G	+	ENSG00000120688	WBP4	protein_coding	Intergenic	.	.	Alu	0.2
15	41091782	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.166667
22	41137168	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.133333
22	41137237	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.0689655
22	41137251	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.190476
X	41198931	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.142857
X	41199077	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.478261
X	41199144	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.142857
1	41234224	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.2
1	41234381	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.142857
1	41234540	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.153846
1	41234607	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.333333
1	41234613	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.1875
19	41284961	A->G	+	ENSG00000105323	HNRNPUL1	protein_coding	Intergenic	.	.	Alu	0.2
22	41336921	A->G	+	ENSG00000100403	ZC3H7B	protein_coding	Intergenic	.	.	Alu	0.4
13	41337422	A->G	+	ENSG00000172766	NAA16	protein_coding	Intergenic	.	.	Alu	0.142857
9	41379594	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
9	41380720	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
15	41424862	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.2
15	41424882	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.3
15	41443812	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.166667
22	41520885	A->G	+	ENSG00000100412	ACO2	protein_coding	Intergenic	.	.	Alu	0.210526
22	41520887	A->G	+	ENSG00000100412	ACO2	protein_coding	Intergenic	.	.	Alu	0.105263
20	41609924	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.25
20	41609929	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.190476
20	41609955	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.1
20	41609985	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.142857
20	41609989	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.342105
20	41609994	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.972222
20	41609995	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.628571
20	41610035	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0487805
20	41610036	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.341463
20	41610051	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.297872
20	41610052	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0638298
20	41610075	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.1
20	41610099	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.666667
20	41610122	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.666667
20	41610123	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0566038
20	41610128	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.297872
22	41627488	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.272727
22	41627491	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.181818
22	41638664	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.384615
17	41762469	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.142857
15	41810443	A->G	+	ENSG00000137802	MAPKBP1	protein_coding	Intergenic	.	.	Alu	0.181818
22	41838478	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.2
22	41858955	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.111111
22	41859003	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.153846
17	41986254	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.2
17	41986349	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.2
8	41995786	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.117647
17	42004018	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.117647
17	42004052	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.25
17	42004058	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.142857
17	42004093	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.105263
17	42006082	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.2
17	42006196	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.181818
17	42007662	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.153846
17	42007723	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.181818
17	42007727	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intergenic	.	.	Alu	0.25
3	42018866	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.214286
3	42018877	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.266667
3	42019011	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	42019018	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	1
3	42019072	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.583333
3	42023037	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.105263
6	42031928	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.153846
8	42033102	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.1875
6	42034074	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.5
6	42034589	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.454545
6	42034610	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.285714
6	42034616	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.388889
6	42034626	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.133333
6	42034641	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.214286
6	42035639	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.142857
6	42035815	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.210526
6	42035816	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.157895
6	42035871	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.266667
6	42035879	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.111111
6	42036212	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.2
6	42036568	A->G	-	ENSG00000112576	CCND3	protein_coding	Intergenic	.	.	Alu	0.333333
8	42044287	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.272727
8	42044382	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.3
4	42053610	A->G	+	ENSG00000014824	SLC30A9	protein_coding	Intergenic	.	.	Alu	0.0952381
15	42170811	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.4
15	42170817	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.153846
15	42170834	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.272727
15	42183226	A->G	-	ENSG00000166887	VPS39	protein_coding	Intergenic	.	.	Alu	0.153846
15	42238347	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.3
15	42238470	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.2
15	42238625	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.153846
15	42238633	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.266667
21	42241718	A->G	+	ENSG00000160179	ABCG1	protein_coding	Intergenic	.	.	Alu	0.166667
15	42243657	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.4
2	42281165	A->G	+	ENSG00000143924	EML4	protein_coding	Intergenic	.	.	Alu	0.4
1	42301333	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.272727
1	42301360	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.1
1	42301394	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.416667
1	42301429	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.230769
1	42301469	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.176471
1	42301489	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.166667
12	42340057	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.3
8	42344829	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.166667
8	42362969	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.12
8	42363045	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.181818
8	42363317	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.153846
8	42363325	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.214286
8	42363326	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.142857
8	42363341	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.142857
8	42363449	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.111111
8	42366028	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.133333
17	42368545	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.0769231
17	42368639	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.0952381
17	42368642	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.105263
17	42370107	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.181818
17	42370108	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.181818
17	42384189	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.142857
17	42384240	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.142857
17	42384267	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.117647
17	42384828	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.272727
8	42531826	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.142857
8	42531827	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.136364
8	42531891	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.30303
8	42531895	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0625
8	42531902	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0625
8	42531915	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.129032
8	42531924	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.09375
8	42531930	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0967742
8	42531957	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.380952
8	42531963	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.153846
8	42531967	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.166667
8	42532032	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.2
8	42532100	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.217391
8	42532106	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.136364
8	42532116	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0952381
8	42532122	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0952381
8	42533433	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.5
8	42533530	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.727273
8	42533533	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.909091
8	42533534	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.454545
8	42533581	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.2
8	42533722	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.2
8	42533784	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.454545
8	42533832	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.166667
8	42533859	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.666667
8	42533887	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.153846
8	42534059	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.153846
8	42534072	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.153846
8	42534082	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.285714
22	42598389	A->G	-	ENSG00000100227	POLDIP3	protein_coding	Intergenic	.	.	Alu	0.181818
3	42618088	A->G	+	ENSG00000114857	NKTR	protein_coding	Intergenic	.	.	Alu	0.2
3	42618293	A->G	+	ENSG00000114857	NKTR	protein_coding	Intergenic	.	.	Alu	0.545455
3	42618296	A->G	+	ENSG00000114857	NKTR	protein_coding	Intergenic	.	.	Alu	0.181818
1	42699715	A->G	+	ENSG00000065978	YBX1	protein_coding	Intergenic	.	.	Alu	0.133333
10	42806615	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.272727
10	42806663	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.272727
22	42828849	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.2
22	42828853	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.153846
22	42835565	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.142857
22	42836222	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.181818
21	42843471	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.105263
21	42843483	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.388889
21	42843484	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.333333
21	42843549	A->G	-	ENSG00000160193	WDR4	protein_coding	Intergenic	.	.	Alu	0.133333
6	42943148	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.545455
6	42943193	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.181818
6	42943221	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.166667
6	42943239	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.1
6	42943240	A->G	+	ENSG00000231113	AL035587.1	antisense	Intergenic	.	.	Alu	0.0952381
22	42987735	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.583333
22	42987739	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.166667
22	42987763	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.714286
22	42987806	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.7
22	42987807	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.9
22	42987884	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.111111
22	43010007	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.3
22	43010073	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.125
8	43060489	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.105263
8	43060510	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.117647
8	43069998	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.266667
8	43069999	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.266667
8	43070029	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.125
8	43070068	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.181818
8	43070092	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.769231
8	43070093	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.357143
8	43070098	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.133333
5	43076789	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.117647
5	43128393	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0967742
5	43128401	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0571429
5	43128402	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0571429
5	43128470	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0833333
5	43128472	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.08
5	43128477	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0909091
5	43128495	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.105263
5	43128775	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.611111
5	43128850	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.263158
5	43128851	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0952381
5	43128883	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.357143
5	43128963	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43129034	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43129038	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43129074	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43129188	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.3
5	43129706	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.272727
5	43130056	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.333333
5	43130059	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.2
5	43130090	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.1
5	43130112	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.125
5	43130113	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.125
5	43130117	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.12
5	43130130	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0952381
5	43130143	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.3
5	43130190	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.1
10	43140047	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.214286
10	43140051	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.235294
10	43140083	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.111111
5	43153370	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.181818
5	43153516	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.272727
5	43153544	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.117647
5	43153548	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.4
5	43153586	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.615385
5	43153587	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.230769
5	43153591	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.214286
5	43153631	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
15	43155108	A->G	+	ENSG00000137842	TMEM62	protein_coding	Intergenic	.	.	Alu	0.2
15	43155114	A->G	+	ENSG00000137842	TMEM62	protein_coding	Intergenic	.	.	Alu	0.181818
2	43171708	A->G	-	.	.	.	Intergenic	.	.	Alu	0.304348
2	43171709	A->G	-	.	.	.	Intergenic	.	.	Alu	0.148148
2	43171739	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
2	43171755	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1
8	43177437	A->G	+	ENSG00000165102	HGSNAT	protein_coding	Intergenic	.	.	Alu	0.2
3	43324453	A->G	+	ENSG00000163788	SNRK	protein_coding	Intergenic	.	.	Alu	0.166667
11	43388869	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.166667
15	43419452	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.153846
15	43419457	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.583333
15	43419458	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.545455
15	43419488	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.2
15	43442714	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.214286
11	43473055	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.153846
11	43473104	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.142857
11	43473790	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.153846
19	43573137	A->G	-	ENSG00000073050	XRCC1	protein_coding	Intergenic	.	.	Alu	0.2
1	43661140	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.272727
1	43661155	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.142857
1	43661175	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.181818
1	43661243	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.909091
1	43661249	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.166667
1	43661472	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.615385
1	43661485	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.615385
1	43661491	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.153846
1	43661495	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.285714
1	43675826	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.3
1	43676232	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.230769
15	43759143	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.0869565
15	43759902	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.307692
15	43759932	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.142857
15	43759935	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.166667
15	43760228	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.108108
15	43760270	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.44
15	43760284	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.1
15	43760346	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.433333
15	43761121	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.133333
2	43991226	A->G	-	ENSG00000138095	LRPPRC	protein_coding	Intergenic	.	.	Alu	0.5
2	43991235	A->G	-	ENSG00000138095	LRPPRC	protein_coding	Intergenic	.	.	Alu	0.181818
2	44199055	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.181818
2	44199075	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.230769
2	44199137	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.225
2	44199138	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.184211
2	44199199	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44199368	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.107143
2	44209600	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44209614	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.142857
2	44209638	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44212823	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.272727
2	44222910	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.214286
2	44222943	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.142857
2	44222948	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.153846
2	44222960	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.333333
2	44222970	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.461538
2	44222972	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.384615
2	44223079	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.1875
2	44223084	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.214286
2	44223094	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.181818
2	44223554	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.204545
2	44223624	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.117647
2	44223631	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.5625
2	44223632	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.5625
2	44223669	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0625
2	44223673	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.125
2	44223695	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.27027
2	44223722	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0588235
2	44223737	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.193548
2	44223766	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.178571
2	44223768	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0689655
2	44223773	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.09375
2	44224289	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.363636
2	44224292	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.2
1	44431354	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.272727
1	44431371	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44431422	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44434596	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.190476
1	44434637	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.111111
1	44434638	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.111111
1	44434893	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.142857
1	44434960	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.4
1	44434961	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44434969	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.4
17	44445631	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44445699	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
1	44475759	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.307692
1	44475885	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.181818
1	44475891	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0909091
1	44475905	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.285714
1	44475927	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.142857
1	44475944	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0909091
1	44475975	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.111111
1	44475986	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0740741
1	44475994	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.172414
1	44490363	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44490366	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.181818
2	44490493	A->G	-	ENSG00000143919	CAMKMT	protein_coding	Intergenic	.	.	Alu	1
1	44493951	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.3
1	44493952	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.3
1	44493965	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.4
1	44493997	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44494006	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44494045	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.176471
1	44494085	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44502866	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.4
1	44502870	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44503158	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.133333
1	44503214	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.384615
1	44503322	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.333333
15	44505675	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.142857
20	44515766	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.166667
20	44515767	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.5
20	44515789	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.125
20	44515795	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.166667
20	44515849	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.2
20	44515851	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.230769
20	44515875	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.214286
20	44515879	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.2
20	44515883	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.307692
20	44516428	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.181818
20	44516485	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.333333
20	44516527	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.357143
20	44516563	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.25
20	44516595	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.166667
20	44516596	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.166667
20	44516615	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.181818
20	44516634	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.153846
15	44521615	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.230769
15	44522073	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.166667
15	44522085	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.12
15	44522092	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.321429
15	44522097	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0588235
15	44522110	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0606061
15	44522134	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0833333
15	44522167	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.4
15	44522268	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0769231
15	44522270	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.115385
15	44522286	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.518519
15	44522297	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.1
15	44522308	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.0869565
1	44527542	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.3
1	44527664	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.75
1	44527670	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.153846
1	44527671	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.285714
1	44527701	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44527749	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44527761	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44527805	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.428571
1	44527811	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	1
1	44527815	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.153846
1	44527828	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
1	44527883	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.5
1	44529468	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.3
15	44549620	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.0952381
15	44549647	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.185185
15	44549687	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.142857
15	44549688	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.176471
15	44601634	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.285714
15	44601640	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.3125
15	44601674	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.454545
15	44601682	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.846154
15	44601686	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.25
15	44601729	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.285714
15	44601735	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.818182
15	44601786	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.133333
15	44601801	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.583333
15	44602617	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.142857
15	44603292	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.1
1	44627097	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.103448
7	44807834	A->G	-	ENSG00000196262	PPIA	protein_coding	Intergenic	.	.	Alu	0.333333
7	44809611	A->G	-	ENSG00000196262	PPIA	protein_coding	Intergenic	.	.	Alu	0.3
7	44832692	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0714286
7	44832701	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.416667
7	44832705	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0769231
7	44832820	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.642857
7	44832822	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.166667
7	44832828	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.4
7	44832838	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.153846
7	44832867	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.166667
7	44832874	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.615385
7	44832881	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.235294
7	44832888	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.35
7	44832906	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.294118
7	44832912	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.111111
7	44832917	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.153846
7	44833133	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.08
7	44833228	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.227273
7	44833263	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0909091
7	44833264	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.136364
7	44833371	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.833333
7	44833499	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.181818
7	44833507	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.769231
7	44833508	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.307692
7	44833516	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.142857
7	44833578	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.133333
7	44834894	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0333333
7	44834911	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0441176
7	44834921	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.103448
7	44836028	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.105263
7	44836032	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0909091
7	44836213	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.105263
7	44836230	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.142857
7	44838063	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.2
7	44838082	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.607143
17	44867357	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.133333
17	44867411	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.2
17	44867470	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.136364
17	44867508	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.5
17	44867532	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.230769
17	44874240	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.333333
17	44874244	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.181818
17	44874248	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.3
17	44874331	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.181818
X	44883925	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.153846
X	44883932	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.142857
X	44883955	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.25
X	44883982	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.1875
X	44883987	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.214286
X	44884016	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.2
X	44892838	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.142857
X	44893060	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0645161
X	44893064	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.2
X	44893081	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0571429
X	44893104	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.2
X	44893107	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.518519
X	44893109	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.192308
X	44893116	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.387097
X	44893118	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0666667
X	44893138	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0689655
X	44964241	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.153846
X	44964328	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.166667
19	45006304	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.2
19	45006760	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.105263
19	45006802	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.115385
19	45006803	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.0769231
19	45012582	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.111111
19	45012999	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.153846
19	45015588	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.3
19	45016758	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.166667
19	45016766	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.105263
19	45017369	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.2
19	45030033	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.25
14	45037772	A->G	+	ENSG00000198718	TOGARAM1	protein_coding	Intergenic	.	.	Alu	1
14	45037773	A->G	+	ENSG00000198718	TOGARAM1	protein_coding	Intergenic	.	.	Alu	0.846154
19	45043265	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.3
X	45045421	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.117647
19	45065183	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.133333
19	45065430	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.125
17	45065503	A->G	+	ENSG00000136448	NMT1	protein_coding	Intergenic	.	.	Alu	0.181818
19	45065506	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.1
17	45065509	A->G	+	ENSG00000136448	NMT1	protein_coding	Intergenic	.	.	Alu	0.181818
19	45066544	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.5
19	45066582	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.230769
19	45095642	A->G	+	ENSG00000104866	PPP1R37	protein_coding	Intergenic	.	.	Alu	0.3125
19	45095648	A->G	+	ENSG00000104866	PPP1R37	protein_coding	Intergenic	.	.	Alu	0.2
14	45208533	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.0952381
14	45208604	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.185185
14	45208605	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.307692
14	45209453	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.125
14	45209531	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.166667
17	45217857	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.153846
17	45218235	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.153846
12	45250446	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.181818
12	45250526	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.4
12	45250612	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.421053
12	45250665	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.384615
12	45250668	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.428571
12	45250958	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.142857
12	45250961	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.166667
17	45304173	A->G	-	ENSG00000006062	MAP3K14	protein_coding	Intergenic	.	.	Alu	0.230769
17	45304174	A->G	-	ENSG00000006062	MAP3K14	protein_coding	Intergenic	.	.	Alu	0.166667
17	45305235	A->G	-	ENSG00000006062	MAP3K14	protein_coding	Intergenic	.	.	Alu	0.3
13	45342831	A->G	+	ENSG00000170919	TPT1-AS1	processed_transcript	Intergenic	.	.	Alu	0.333333
17	45505641	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
17	45505642	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
17	45506626	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
17	45506631	A->G	-	.	.	.	Intergenic	.	.	Alu	0.255814
17	45506636	A->G	-	.	.	.	Intergenic	.	.	Alu	0.238095
17	45506660	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0769231
17	45506702	A->G	-	.	.	.	Intergenic	.	.	Alu	0.289474
17	45506728	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0740741
17	45563714	A->G	-	.	.	.	Intergenic	.	.	Alu	0.545455
17	45563908	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
1	45625115	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
1	45648065	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.166667
1	45648121	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.153846
1	45653304	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.125
1	45653316	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.25
1	45653331	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
1	45653537	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	45653587	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.3125
1	45653606	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.105263
1	45653917	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.21875
1	45653918	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.235294
1	45653954	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.409091
1	45656777	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.16
1	45656781	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.21875
1	45656782	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.375
1	45656794	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.212121
1	45656884	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.235294
1	45656885	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.176471
1	45656889	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.125
1	45656944	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.136364
1	45656950	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.166667
1	45671252	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
1	45671321	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.1
1	45671330	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.473684
1	45671413	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
1	45671423	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.142857
1	45671428	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.444444
1	45671429	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.333333
1	45671478	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
1	45671479	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.466667
1	45671486	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.181818
1	45671562	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.272727
1	45671616	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.363636
1	45680341	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.1
12	45801218	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.4
X	45847335	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
12	45899063	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.307692
12	45899086	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.307692
12	45899151	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.6
12	45899161	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.117647
12	45899221	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.0909091
12	45899229	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.0869565
12	45899252	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.272727
12	45936175	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.1875
12	45936280	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.103448
12	45936319	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.117647
12	45936324	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.117647
12	45936360	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.133333
12	45936361	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.3125
12	45936423	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.153846
12	45954487	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0434783
12	45954654	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0344828
12	45954662	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0357143
12	45954668	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.05
12	45957971	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.107143
10	45994144	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.166667
10	45994169	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.125
10	45994179	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.153846
10	45994205	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.181818
10	45994219	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.166667
10	45994224	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.166667
10	45994289	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.416667
18	46059139	A->G	-	ENSG00000152229	PSTPIP2	protein_coding	Intergenic	.	.	Alu	0.166667
17	46077759	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.08
17	46148672	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.285714
17	46149141	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.2
18	46189038	A->G	+	ENSG00000152242	C18orf25	protein_coding	Intergenic	.	.	Alu	0.166667
21	46271402	A->G	-	ENSG00000160294	MCM3AP	protein_coding	Intergenic	.	.	Alu	0.636364
21	46271413	A->G	-	ENSG00000160294	MCM3AP	protein_coding	Intergenic	.	.	Alu	0.5
1	46293989	A->G	-	ENSG00000132128	LRRC41	protein_coding	Intergenic	.	.	Alu	0.2
1	46294232	A->G	-	ENSG00000132128	LRRC41	protein_coding	Intergenic	.	.	Alu	0.166667
1	46294246	A->G	-	ENSG00000132128	LRRC41	protein_coding	Intergenic	.	.	Alu	0.153846
21	46461177	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.909091
21	46461183	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.3
21	46468305	A->G	+	ENSG00000223692	DIP2A-IT1	sense_intronic	Intergenic	.	.	Alu	0.105263
11	46479027	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.363636
11	46479033	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.416667
17	46496418	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
16	46608672	A->G	-	ENSG00000171241	SHCBP1	protein_coding	Intergenic	.	.	Alu	0.3
16	46608732	A->G	-	ENSG00000171241	SHCBP1	protein_coding	Intergenic	.	.	Alu	0.272727
11	46625086	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.25
11	46625142	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.2
11	46648646	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.272727
11	46648656	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.416667
16	46654797	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	46655217	A->G	-	ENSG00000065923	SLC9A7	protein_coding	Intergenic	.	.	Alu	0.454545
X	46655227	A->G	-	ENSG00000065923	SLC9A7	protein_coding	Intergenic	.	.	Alu	0.3
19	46681152	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.153846
11	46683137	A->G	-	ENSG00000175220	ARHGAP1	protein_coding	Intergenic	.	.	Alu	0.153846
11	46683167	A->G	-	ENSG00000175220	ARHGAP1	protein_coding	Intergenic	.	.	Alu	0.25
11	46685482	A->G	-	ENSG00000175220	ARHGAP1	protein_coding	Intergenic	.	.	Alu	0.5
19	46708462	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46708478	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.2
19	46708533	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.210526
19	46709044	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.153846
19	46709053	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.214286
19	46709202	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46709245	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.263158
19	46709246	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.176471
19	46709562	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.285714
19	46710269	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.357143
2	46733453	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.166667
10	46813985	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
10	46814023	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
10	46814025	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
10	46814032	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
10	46814051	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
10	46814158	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
11	46831653	A->G	-	ENSG00000175216	CKAP5	protein_coding	Intergenic	.	.	Alu	0.3
11	46831953	A->G	-	ENSG00000175216	CKAP5	protein_coding	Intergenic	.	.	Alu	0.181818
2	46961695	A->G	+	ENSG00000068724	TTC7A	protein_coding	Intergenic	.	.	Alu	0.166667
11	47053900	A->G	+	ENSG00000149179	C11orf49	protein_coding	Intergenic	.	.	Alu	0.833333
11	47053919	A->G	+	ENSG00000149179	C11orf49	protein_coding	Intergenic	.	.	Alu	0.75
3	47099712	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.166667
3	47100071	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.153846
3	47131548	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.2
3	47131875	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.125
3	47131960	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.153846
3	47132359	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.333333
3	47132375	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.214286
3	47132404	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.2
3	47132405	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.142857
3	47132430	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.333333
3	47132468	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.5
17	47158783	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.08
17	47160365	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0454545
17	47160366	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0454545
3	47160412	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.136364
3	47160429	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.263158
3	47160438	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.266667
3	47160503	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.125
3	47160513	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.230769
17	47169115	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.125
17	47169129	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.133333
17	47169210	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.181818
17	47169234	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.272727
19	47179589	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.166667
20	47288531	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.133333
20	47288572	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.176471
20	47288595	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.4375
20	47288630	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.25
20	47288648	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.115385
20	47288660	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.137931
20	47288662	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.142857
1	47299468	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.285714
1	47299504	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.1875
1	47299557	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.272727
1	47299572	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.25
1	47299575	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.166667
1	47299586	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.571429
1	47299587	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.428571
16	47301486	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.363636
16	47301525	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.181818
16	47301668	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.272727
16	47301669	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.181818
1	47305860	A->G	-	ENSG00000123473	STIL	protein_coding	Intergenic	.	.	Alu	0.2
11	47367825	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47367882	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.294118
11	47367896	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.157895
11	47367952	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47367960	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.666667
11	47367981	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.75
11	47367982	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.125
11	47368025	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47368253	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.470588
11	47480817	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.392857
11	47480818	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.275862
11	47480879	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.297297
11	47480887	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.285714
11	47480912	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.1
11	47480924	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.175
11	47480957	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.171429
11	47481147	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.388889
11	47481172	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.133333
11	47481292	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.190476
11	47481299	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0434783
11	47481300	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.075
11	47481323	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.102564
11	47481362	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.214286
11	47481411	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.190476
17	47488813	A->G	-	ENSG00000228782	MRPL45P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.176471
17	47488830	A->G	-	ENSG00000228782	MRPL45P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.105263
11	47490090	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47512226	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47512249	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
20	47512309	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.125
11	47512313	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
20	47512404	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.166667
20	47512416	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.125
20	47512439	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.263158
20	47512447	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.0833333
20	47512509	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.0967742
20	47513471	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.2
20	47513501	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.133333
20	47513511	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.133333
20	47513547	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.25
11	47513588	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0740741
11	47513598	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0769231
11	47514096	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.388889
11	47514097	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.105263
11	47514102	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.105263
11	47514105	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.15
11	47514108	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.15
11	47514109	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.25
20	47519233	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.375
20	47519371	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47519827	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.1
20	47519841	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.111111
20	47519842	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.125
20	47519879	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.142857
20	47519887	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.0909091
20	47519891	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.173913
20	47519944	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.130435
20	47532849	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47532854	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.363636
20	47532884	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47532985	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.125
11	47534121	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.294118
11	47534125	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.25
11	47534132	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.157895
11	47534157	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0606061
11	47534166	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.37037
11	47534167	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.107143
11	47534177	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47534203	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0666667
11	47534209	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0689655
11	47534233	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.238095
11	47534234	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0952381
11	47534302	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0952381
11	47534303	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0952381
11	47534325	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.111111
11	47537993	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.266667
11	47537998	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.3125
11	47538044	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.105263
11	47538054	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.642857
11	47538060	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47538172	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47542552	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47542560	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.384615
11	47542565	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47542569	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47542590	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.333333
11	47542606	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47542630	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.277778
11	47542656	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47542658	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47542662	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47542680	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47542749	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47542771	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47542779	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.333333
11	47542915	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.181818
20	47548281	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
17	47596032	A->G	+	ENSG00000141279	NPEPPS	protein_coding	Intergenic	.	.	Alu	0.111111
3	47601837	A->G	-	ENSG00000214773	AC112512.1	sense_intronic	Intergenic	.	.	Alu	0.2
3	47708279	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.3
3	47708305	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.285714
3	47727997	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.166667
3	47728154	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.285714
3	47728155	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.266667
3	47728289	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.166667
3	47728290	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.258065
3	47728291	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.15625
11	47738984	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.2
8	47779714	A->G	-	ENSG00000253729	PRKDC	protein_coding	Intergenic	.	.	Alu	0.3
11	47825656	A->G	-	ENSG00000030066	NUP160	protein_coding	Intergenic	.	.	Alu	0.461538
11	47825657	A->G	-	ENSG00000030066	NUP160	protein_coding	Intergenic	.	.	Alu	0.307692
2	47825669	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.08
2	47843895	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.153846
2	47874673	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.166667
2	47874717	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.181818
2	47874807	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.133333
2	47877757	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.2
2	47877813	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.142857
2	47877817	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.136364
2	47878434	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.314286
2	47878468	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0444444
2	47878485	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.12
2	47878489	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.25
2	47878494	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0454545
2	47878527	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.1
2	47878530	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.142857
2	47878532	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.323529
2	47878533	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.225806
2	47878534	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0689655
2	47878539	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.428571
2	47878550	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0555556
2	47878569	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0444444
2	47878576	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0714286
2	47878629	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0638298
2	47878634	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0487805
2	47878641	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.181818
2	47878651	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.294118
2	47878721	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.166667
2	47878732	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.315789
2	47878733	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.2
2	47878734	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.238095
2	47878735	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.136364
2	47878786	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.1875
2	47878815	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.375
2	47878824	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.102564
2	47878832	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0526316
2	47878833	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0588235
2	47878838	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.363636
2	47878879	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.175
2	47878896	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.217391
2	47878897	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0434783
2	47878919	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.25
2	47878927	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.139535
2	47890950	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.2
2	47896408	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0810811
2	47896427	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0526316
2	47896454	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0444444
2	47896468	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0731707
13	47937172	A->G	-	ENSG00000136143	SUCLA2	protein_coding	Intergenic	.	.	Alu	0.2
3	48070301	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.4
3	48070308	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.3
3	48070310	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.3
13	48085124	A->G	-	ENSG00000136146	MED4	protein_coding	Intergenic	.	.	Alu	0.181818
19	48119667	A->G	-	ENSG00000105486	LIG1	protein_coding	Intergenic	.	.	Alu	0.363636
4	48128661	A->G	-	ENSG00000074966	TXK	protein_coding	Intergenic	.	.	Alu	0.2
4	48141772	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0869565
4	48141785	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.470588
4	48141788	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0740741
4	48141811	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.133333
4	48141820	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.407407
4	48141821	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.12
4	48141877	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0606061
4	48141878	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.457143
4	48141886	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.636364
4	48141900	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.521739
4	48141917	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0714286
4	48141920	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0666667
4	48141926	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.241379
4	48142352	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.666667
10	48355415	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.1
10	48356584	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.176471
10	48356586	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.333333
10	48356613	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.111111
10	48356633	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.105263
10	48356640	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.105263
10	48356695	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.225806
10	48356705	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.0689655
10	48356706	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.0666667
10	48356722	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.34375
10	48356739	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.0588235
10	48356748	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.137931
16	48366999	A->G	-	ENSG00000196470	SIAH1	protein_coding	Intergenic	.	.	Alu	0.166667
10	48380103	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.166667
19	48458590	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.25
19	48458821	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.2
19	48459121	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.6
X	48580629	A->G	+	ENSG00000228343	AC115618.2	antisense	Intergenic	.	.	Alu	0.166667
12	48664052	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	48664092	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0606061
12	48664094	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0645161
12	48664097	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0967742
12	48664718	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.1
12	48664779	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	48664787	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.25
12	48664788	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0833333
3	48697153	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.181818
3	48697159	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.181818
3	48697363	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.138889
3	48697364	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0540541
3	48697423	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.22449
3	48697426	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.136364
3	48697431	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0789474
3	48697437	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0789474
3	48697454	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0454545
3	48697464	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0967742
3	48697560	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.176471
3	48697627	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.818182
3	48697790	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.111111
3	48697794	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.235294
3	48697817	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0740741
3	48702608	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.4
17	48845452	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.3
17	48845488	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.416667
17	48845528	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.181818
17	48866627	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
17	48866652	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
17	48866678	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
17	48866688	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
17	48866839	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
17	48866853	A->G	+	.	.	.	Intergenic	.	.	Alu	0.315789
17	48866855	A->G	+	.	.	.	Intergenic	.	.	Alu	0.315789
17	48866856	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
17	48866882	A->G	+	.	.	.	Intergenic	.	.	Alu	0.115385
17	48866910	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
17	48866922	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0606061
17	48866923	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0606061
17	48866932	A->G	+	.	.	.	Intergenic	.	.	Alu	0.103448
17	48866933	A->G	+	.	.	.	Intergenic	.	.	Alu	0.233333
17	48866938	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
17	48867176	A->G	+	.	.	.	Intergenic	.	.	Alu	0.210526
17	48867276	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
17	48867342	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
17	48867409	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
17	48867413	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
17	48867453	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
17	48867542	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	48867598	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
17	48867675	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	48867687	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
17	48867860	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
20	48927609	A->G	+	ENSG00000124198	ARFGEF2	protein_coding	Intergenic	.	.	Alu	0.2
3	48937814	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.166667
3	48939037	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.166667
3	48939097	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.153846
3	48939107	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.214286
3	48939168	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.5
13	48990641	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.0952381
13	48990687	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.15
13	48991423	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.105263
13	48991431	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.0952381
13	48991608	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.142857
13	48991609	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.142857
13	48991675	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.142857
X	48994291	A->G	-	ENSG00000068400	GRIPAP1	protein_coding	Intergenic	.	.	Alu	0.2
X	48994388	A->G	-	ENSG00000068400	GRIPAP1	protein_coding	Intergenic	.	.	Alu	0.166667
15	49034889	A->G	-	ENSG00000138593	SECISBP2L	protein_coding	Intergenic	.	.	Alu	0.263158
3	49063727	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.153846
3	49063732	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.384615
3	49064044	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.833333
3	49064045	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.153846
3	49064203	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49064204	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
3	49064351	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.153846
3	49069637	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
20	49071515	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.181818
20	49071563	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.117647
20	49071585	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.153846
20	49071597	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.153846
20	49071602	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.166667
20	49071847	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.2
20	49071874	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.1875
20	49072018	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.136364
3	49078567	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.153846
3	49078576	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
3	49088159	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
3	49088421	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.230769
3	49088434	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
3	49088584	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
3	49089180	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.142857
3	49089228	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.133333
3	49089229	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
3	49089230	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.142857
20	49163488	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.136364
20	49163498	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.291667
20	49163499	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.375
20	49163676	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49299158	A->G	-	ENSG00000114316	USP4	protein_coding	Intergenic	.	.	Alu	0.181818
17	49336462	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.230769
17	49336498	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.2
17	49336601	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.2
17	49336723	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.166667
17	49339244	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.428571
17	49347837	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.181818
17	49348019	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.272727
3	49368819	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.3
3	49368824	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.15
3	49368846	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.272727
3	49368936	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.5
3	49368973	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.214286
3	49368979	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.307692
3	49368980	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.142857
3	49369188	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.153846
3	49407330	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.258065
3	49407331	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.142857
3	49407336	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0869565
3	49407339	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0681818
3	49407358	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0545455
3	49407371	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0638298
3	49407374	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0754717
3	49407414	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.12766
3	49407417	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.204545
3	49407428	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0857143
3	49407429	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.125
17	49606791	A->G	-	ENSG00000121067	SPOP	protein_coding	Intergenic	.	.	Alu	0.461538
14	49646375	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.333333
14	49646432	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.333333
14	49646433	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.583333
14	49646516	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.166667
14	49646524	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.166667
14	49646558	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.181818
14	49658241	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.2
14	49658281	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.230769
14	49658331	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.153846
14	49658340	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.357143
14	49658348	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.615385
14	49658349	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.384615
20	49683531	A->G	-	ENSG00000158470	B4GALT5	protein_coding	Intergenic	.	.	Alu	0.416667
20	49683558	A->G	-	ENSG00000158470	B4GALT5	protein_coding	Intergenic	.	.	Alu	0.285714
3	49737044	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.583333
12	49745605	A->G	+	ENSG00000139644	TMBIM6	protein_coding	Intergenic	.	.	Alu	0.3
13	49770389	A->G	-	ENSG00000102753	KPNA3	protein_coding	Intergenic	.	.	Alu	0.166667
13	49788607	A->G	-	ENSG00000102753	KPNA3	protein_coding	Intergenic	.	.	Alu	0.2
13	49788636	A->G	-	ENSG00000102753	KPNA3	protein_coding	Intergenic	.	.	Alu	0.2
14	49819987	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.0833333
14	49820019	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.0909091
14	49820020	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.181818
14	49820084	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.0740741
14	49823074	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.7
14	49823075	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.7
14	49831445	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.583333
14	49838677	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.05
14	49839215	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.25
14	49839286	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.125
14	49839318	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.125
14	49839367	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.166667
22	49869030	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.117647
22	49869039	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.235294
22	49869078	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.133333
20	49873606	A->G	+	ENSG00000197818	SLC9A8	protein_coding	Intergenic	.	.	Alu	0.214286
20	49873651	A->G	+	ENSG00000197818	SLC9A8	protein_coding	Intergenic	.	.	Alu	0.133333
22	49878140	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.2
20	49939890	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	1
20	49939893	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.272727
20	49939894	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.181818
20	49939963	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.2
3	49947131	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
10	49963795	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.181818
10	49963801	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.0869565
10	49965060	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.133333
10	49966655	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.125
10	49966705	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.125
10	49966731	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.142857
10	49969508	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.142857
13	50008882	A->G	+	ENSG00000204977	TRIM13	protein_coding	Intergenic	.	.	Alu	0.166667
3	50038646	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.3
13	50058032	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.142857
13	50065621	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.5
3	50097275	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.2
15	50098368	A->G	-	ENSG00000104043	ATP8B4	protein_coding	Intergenic	.	.	Alu	0.142857
15	50098483	A->G	-	ENSG00000104043	ATP8B4	protein_coding	Intergenic	.	.	Alu	0.181818
3	50099040	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.272727
3	50099076	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.181818
3	50099134	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.333333
3	50099148	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.545455
3	50099512	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
3	50099546	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
3	50099577	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.117647
3	50099578	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.133333
3	50111451	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.363636
3	50111477	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.25
3	50111481	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.363636
3	50111636	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.181818
3	50111642	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.285714
3	50111648	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
3	50111654	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.208333
3	50112155	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.111111
3	50112216	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.12
3	50112217	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0769231
3	50112221	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
3	50112226	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0952381
3	50112269	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.409091
3	50112273	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.115385
3	50112274	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0740741
3	50112295	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.25
3	50112305	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.121212
3	50112318	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.075
3	50112322	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0714286
3	50112337	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.102564
3	50112360	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.666667
13	50118674	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.0833333
13	50118675	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.114286
13	50118744	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.222222
13	50118813	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.133333
13	50118814	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.133333
13	50118866	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.114286
3	50119578	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.153846
3	50119579	A->G	+	ENSG00000235016	SEMA3F-AS1	antisense	Intergenic	.	.	Alu	0.153846
12	50153372	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.214286
12	50153377	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.285714
12	50153408	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.1
12	50153418	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.173913
12	50153444	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.166667
12	50153453	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.294118
12	50153457	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.133333
12	50153481	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.3125
12	50153483	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.105263
12	50153506	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.416667
12	50153512	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.285714
12	50161661	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.6
12	50161691	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.5
12	50161694	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.5
12	50161695	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.4
12	50161967	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.4375
12	50162007	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.333333
12	50162054	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.111111
12	50162148	A->G	-	ENSG00000139624	CERS5	protein_coding	Intergenic	.	.	Alu	0.294118
14	50193314	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.25
14	50193315	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.25
14	50193948	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.538462
16	50197008	A->G	+	ENSG00000121274	TENT4B	protein_coding	Intergenic	.	.	Alu	0.272727
14	50197781	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0789474
14	50197785	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.1
14	50197804	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0588235
14	50197821	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.219512
14	50197826	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.25
14	50197827	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.5
14	50197884	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.148148
14	50197886	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0714286
14	50197887	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.137931
14	50197892	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0666667
14	50197899	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.42
14	50197923	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0392157
14	50197962	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.097561
14	50214908	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.136364
15	50300644	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.1875
17	50321998	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
15	50324641	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.307692
15	50324682	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.166667
15	50324683	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.176471
15	50330176	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	50331967	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0833333
15	50331971	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	50331972	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	50332012	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.09375
15	50332013	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0625
15	50332028	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.136364
15	50332121	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.418605
15	50332147	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0888889
15	50332150	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0425532
15	50334575	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.166667
15	50334600	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.1
15	50334605	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.15
15	50334640	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0555556
15	50334646	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.322581
15	50334672	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.09375
3	50335389	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0465116
3	50335409	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0769231
3	50335662	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.12
15	50345850	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.1
15	50346887	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0555556
22	50396375	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.117647
22	50396401	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.142857
12	50409427	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.181818
12	50409439	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.363636
12	50409959	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.166667
12	50409972	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.2
15	50494878	A->G	+	ENSG00000138592	USP8	protein_coding	Intergenic	.	.	Alu	0.272727
15	50582028	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.272727
15	50582177	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.166667
15	50582178	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.153846
15	50582186	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.133333
15	50582208	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.631579
20	50588893	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.166667
20	50588920	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.142857
20	50588961	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.153846
17	50727997	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.193548
17	50730023	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.533333
17	50730115	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.55
17	50730117	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.714286
17	50730138	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.421053
17	50730139	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.2
17	50730368	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.242424
17	50730398	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.111111
17	50730400	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.259259
17	50730401	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.821429
17	50730450	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.404762
17	50730464	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.324324
17	50730472	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0526316
17	50730889	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.157895
17	50735110	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.2
17	50735150	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.235294
17	50735155	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.125
17	50735162	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.272727
17	50735180	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.181818
14	50800875	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.166667
14	50800920	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.117647
14	50800921	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.117647
14	50801002	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.125
14	50801363	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.142857
14	50801364	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.285714
14	50801366	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.307692
14	50803964	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.294118
14	50803965	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.470588
14	50803988	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.176471
14	50804001	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.181818
14	50804079	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.181818
14	50804124	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.235294
14	50811310	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.125
14	50811312	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.1875
14	50811708	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.166667
20	50907033	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.142857
20	50907036	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.142857
20	50907106	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.333333
20	50907156	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.133333
20	50907186	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.142857
20	50907199	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.1875
20	50907352	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.181818
20	50907364	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.230769
20	50907391	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.181818
20	50922658	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.0833333
20	50922704	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.0769231
20	50922717	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.0952381
20	50922854	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.0952381
13	50939210	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.1875
13	50939236	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.222222
13	50939435	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.384615
13	50939440	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.5
13	50939459	A->G	+	ENSG00000136104	RNASEH2B	protein_coding	Intergenic	.	.	Alu	0.166667
1	50954695	A->G	-	ENSG00000185104	FAF1	protein_coding	Intergenic	.	.	Alu	0.3
17	50971206	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.2
17	50971225	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.3
17	50971564	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.363636
17	50971600	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.2
17	50992125	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.166667
17	50998095	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.08
17	50998128	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.111111
17	50998143	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.125
17	50998160	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.103448
17	50998166	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.107143
17	50998202	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.117647
17	50998210	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.357143
17	50998211	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.538462
17	50998214	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.307692
17	50998325	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.166667
17	51027214	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.307692
17	51027227	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	51027320	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.384615
17	51027349	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.181818
17	51054195	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.142857
17	51054219	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.272727
17	51054231	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.214286
17	51054241	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.142857
17	51054277	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.285714
17	51054324	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.272727
17	51054356	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.125
17	51083332	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0869565
17	51086060	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.416667
17	51086065	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.166667
17	51086066	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.25
17	51086083	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.285714
1	51251785	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.230769
1	51251986	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.2
1	51253006	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.166667
1	51253309	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.181818
1	51264136	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.153846
1	51264150	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.153846
1	51374955	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.25
1	51384501	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.2
3	51469424	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.3
3	51486020	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.105263
3	51486030	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.133333
3	51486071	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.133333
3	51486085	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.428571
3	51486093	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.214286
3	51486095	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.133333
3	51486290	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.2
3	51486445	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	51486772	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.2
3	51487110	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.181818
3	51487198	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.571429
1	51643897	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.25
1	51643933	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.166667
1	51643959	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.166667
1	51644019	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.285714
13	51713631	A->G	+	ENSG00000139668	WDFY2	protein_coding	Intergenic	.	.	Alu	0.125
13	51713695	A->G	+	ENSG00000139668	WDFY2	protein_coding	Intergenic	.	.	Alu	0.2
8	51874078	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.0909091
8	51874118	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.0571429
8	51874119	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.0571429
15	51916974	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.2
15	51917237	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.1875
15	51917291	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.285714
15	51917374	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.190476
15	51933514	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.181818
15	51933515	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.545455
15	51934527	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.5
15	51934888	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.333333
15	51934930	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.133333
15	51934940	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.153846
15	51934941	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.153846
15	51934985	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.2
15	51940000	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.5
15	51940001	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.416667
15	51940306	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.2
15	51943606	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.142857
15	51943645	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.117647
15	51945179	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.117647
15	51945202	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.4
15	51956162	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.636364
15	51956163	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.272727
15	51974741	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.125
15	51974779	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.3
1	52040205	A->G	-	ENSG00000117862	TXNDC12	protein_coding	Intergenic	.	.	Alu	0.166667
1	52040206	A->G	-	ENSG00000117862	TXNDC12	protein_coding	Intergenic	.	.	Alu	0.166667
19	52193650	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.315789
19	52193669	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.1
19	52193670	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.35
19	52193687	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.230769
19	52193703	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.875
19	52193750	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.833333
19	52193770	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.533333
19	52193857	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.3125
19	52193910	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.6
19	52193929	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.5
19	52194006	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.142857
19	52194033	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.142857
19	52194034	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.6875
19	52270885	A->G	+	ENSG00000196214	ZNF766	protein_coding	Intergenic	.	.	Alu	0.2
19	52298462	A->G	+	ENSG00000198464	ZNF480	protein_coding	Intergenic	.	.	Alu	0.454545
3	52414903	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.272727
3	52414951	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.368421
3	52414953	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.5
3	52414959	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.157895
1	52440330	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.130435
1	52440350	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.0555556
1	52441316	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.470588
1	52441317	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.133333
1	52441322	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.217391
1	52441344	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.130435
1	52441380	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.736842
1	52441381	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.117647
1	52441390	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.411765
1	52441415	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.133333
1	52441539	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.222222
1	52441560	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.1
1	52441565	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.55
1	52441566	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.75
1	52531976	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.285714
1	52531985	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.111111
1	52532016	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.222222
1	52532026	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.75
1	52532034	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.25
1	52532058	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.157895
15	52563004	A->G	-	ENSG00000128989	ARPP19	protein_coding	Intergenic	.	.	Alu	0.125
15	52563013	A->G	-	ENSG00000128989	ARPP19	protein_coding	Intergenic	.	.	Alu	0.235294
3	52591582	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.133333
3	52591634	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.25
3	52591644	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.307692
3	52591657	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.25
3	52592194	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.181818
19	52639582	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.181818
19	52639588	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.3
19	52639589	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.2
19	52639660	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.3
19	52647527	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.2
8	52698391	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0555556
8	52698483	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0416667
8	52698514	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0377358
8	52698533	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0322581
8	52698534	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0491803
8	52698576	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0740741
8	52698797	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0294118
8	52698802	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0757576
8	52698828	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.03125
8	52698854	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.458333
8	52698857	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0363636
8	52698862	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0298507
8	52698865	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0333333
8	52698871	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.046875
8	52698884	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0322581
8	52698899	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.310811
8	52698909	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0769231
8	52698923	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0652174
8	52698928	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.433962
8	52698933	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.185185
8	52701215	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.1875
8	52701260	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.1
8	52701338	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.176471
8	52701391	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0833333
8	52701397	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0645161
8	52701398	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.09375
8	52701420	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0666667
8	52706401	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0909091
8	52706796	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.571429
8	52706799	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.357143
8	52706844	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.125
8	52706855	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.470588
8	52706856	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.176471
8	52706857	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.5
8	52706866	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.947368
8	52706889	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.315789
8	52706904	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.25
8	52708395	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.142857
14	52714287	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.454545
14	52714314	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.142857
14	52714607	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.0769231
14	52714633	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.424242
14	52714642	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.633333
14	52714645	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.129032
14	52714715	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.0526316
14	52714723	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.0645161
14	52714746	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.125
14	52714787	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.294118
14	52714811	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.1
19	52723395	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.153846
19	52726323	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.111111
19	52726575	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.416667
19	52926495	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.25
19	52926523	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.181818
19	52941024	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.230769
19	52941044	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
19	52941054	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.272727
19	52941090	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.384615
12	53026006	A->G	+	ENSG00000063046	EIF4B	protein_coding	Intergenic	.	.	Alu	0.142857
3	53308373	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.2
3	53308527	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.142857
3	53314745	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.2
3	53314944	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.2
3	53315892	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.166667
6	53320069	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.272727
6	53320079	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.416667
6	53320112	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.2
6	53320202	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.545455
6	53320504	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.153846
6	53320507	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.181818
6	53330636	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.170732
6	53330660	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.102564
3	53330983	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.117647
3	53330997	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.111111
3	53331007	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.1875
3	53331038	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.133333
3	53331041	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.142857
3	53333278	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.214286
3	53333289	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.181818
3	53333340	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.166667
3	53333349	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.230769
3	53333350	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.153846
3	53335414	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.157895
3	53335887	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.0869565
3	53336079	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.12
4	53419473	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
4	53419534	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.235294
4	53419541	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.0952381
4	53419558	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.304348
4	53419893	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.0869565
4	53419906	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.0645161
4	53420030	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.2
4	53420051	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.136364
4	53420283	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.103448
4	53420285	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
4	53420312	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.125
4	53436943	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.2
6	53533920	A->G	-	ENSG00000001084	GCLC	protein_coding	Intergenic	.	.	Alu	0.153846
5	53605759	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.5
5	53605760	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.461538
5	53605837	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.166667
5	53605893	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.705882
5	53605899	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.722222
5	53605907	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.277778
12	53668400	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.5
12	53668401	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.230769
12	53668498	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.142857
2	53789828	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.583333
2	53789925	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.272727
2	53789939	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.181818
2	53790163	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.214286
2	53790198	A->G	+	ENSG00000068912	ERLEC1	protein_coding	Intergenic	.	.	Alu	0.142857
16	53881004	A->G	+	ENSG00000140718	FTO	protein_coding	Intergenic	.	.	Alu	0.181818
2	53951220	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.2
2	53965291	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.384615
2	53965327	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.214286
8	53981877	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.235294
8	53981881	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.133333
8	53990436	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.176471
8	53990439	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.105263
8	53990490	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.117647
8	53992450	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.416667
8	53992486	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.352941
8	53992498	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.611111
8	53993015	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.0689655
8	53993020	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.0689655
8	53993038	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.366667
8	53993093	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.294118
8	53993176	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.380952
8	53993200	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.466667
8	53997180	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.5
16	54004868	A->G	+	ENSG00000140718	FTO	protein_coding	Intergenic	.	.	Alu	0.3
1	54032988	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.411765
1	54032994	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.133333
1	54033039	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.4
1	54033043	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.230769
1	54050317	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.0555556
1	54050390	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.153846
1	54050395	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.216216
1	54050396	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.111111
1	54050834	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.117647
1	54051009	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.08
5	54055493	A->G	-	ENSG00000185305	ARL15	protein_coding	Intergenic	.	.	Alu	0.2
5	54055507	A->G	-	ENSG00000185305	ARL15	protein_coding	Intergenic	.	.	Alu	0.3
8	54060804	A->G	-	ENSG00000120992	LYPLA1	protein_coding	Intergenic	.	.	Alu	0.25
19	54175687	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.2
19	54177434	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.3
19	54177567	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.153846
19	54177568	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.285714
19	54177570	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.4
19	54177687	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.133333
19	54177714	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.15
19	54177715	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.190476
19	54177717	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.190476
19	54177864	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.111111
19	54178049	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.208333
19	54178191	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.333333
19	54178196	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.684211
X	54562329	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
X	54562651	A->G	+	.	.	.	Intergenic	.	.	Alu	0.352941
X	54562666	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	54562672	A->G	+	.	.	.	Intergenic	.	.	Alu	0.222222
X	54562673	A->G	+	.	.	.	Intergenic	.	.	Alu	0.411765
X	54562708	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
X	54562748	A->G	+	.	.	.	Intergenic	.	.	Alu	0.15
X	54562750	A->G	+	.	.	.	Intergenic	.	.	Alu	0.409091
X	54563515	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	54563522	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
X	54563528	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
X	54563529	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
X	54563711	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
X	54563731	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
X	54563736	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
X	54564971	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
X	54564972	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
X	54564978	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	54564982	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
1	54647784	A->G	+	ENSG00000184313	MROH7	protein_coding	Intergenic	.	.	Alu	0.2
14	55058576	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.130435
14	55058669	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0833333
14	55058670	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.125
14	55058709	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.114286
14	55058712	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.1875
14	55058752	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0689655
14	55059383	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.075
14	55059560	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.136364
14	55059561	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0909091
14	55278711	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.205882
14	55278741	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0833333
14	55278752	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.108108
14	55278767	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0487805
14	55278780	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0666667
14	55278826	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.333333
14	55278828	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.153846
14	55278859	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.130435
14	55278870	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.4
14	55278877	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.631579
14	55278901	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0952381
14	55279055	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.576923
14	55279093	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0434783
14	55279112	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.155556
14	55279113	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.133333
14	55279125	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0434783
14	55279128	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0851064
14	55279129	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0625
14	55279131	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0416667
14	55279137	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0697674
14	55279140	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.111111
14	55279148	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.138889
14	55279166	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.314815
14	55279167	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0740741
14	55279183	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.196078
14	55279207	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.228571
14	55281120	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.2
14	55281133	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.521739
14	55281219	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.125
14	55285159	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.181818
2	55369634	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.166667
2	55369635	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.166667
18	55376146	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.08
18	55376193	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.136364
18	55376252	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.08
18	55376285	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.117647
18	55376317	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.133333
4	55401907	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.2
4	55401952	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.2
2	55407997	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.166667
7	55408542	A->G	+	ENSG00000132434	LANCL2	protein_coding	Intergenic	.	.	Alu	0.181818
7	55408549	A->G	+	ENSG00000132434	LANCL2	protein_coding	Intergenic	.	.	Alu	0.583333
7	55408624	A->G	+	ENSG00000132434	LANCL2	protein_coding	Intergenic	.	.	Alu	0.173913
4	55412183	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.166667
4	55412218	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.133333
4	55412229	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.642857
4	55412241	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.181818
4	55412243	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.153846
4	55412274	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.235294
4	55412300	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.166667
5	55433053	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.125
5	55433054	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.68
5	55433084	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.125
5	55433099	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.1875
5	55433192	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.181818
5	55433208	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.294118
5	55433220	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.166667
5	55433245	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.454545
5	55433246	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.166667
5	55433286	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	55433291	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.333333
5	55433704	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.615385
5	55433749	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.315789
5	55433758	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.4
5	55433759	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.2
5	55433881	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.625
5	55433882	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.625
5	55433887	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.1875
5	55434008	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.363636
5	55434025	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.416667
5	55434081	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.2
5	55434086	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.545455
5	55434121	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.133333
2	55573971	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.037037
2	55573991	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.12
2	55574662	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.153846
2	55574883	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.3
19	55638760	A->G	+	ENSG00000213015	ZNF580	protein_coding	Intergenic	.	.	Alu	0.6
12	55787574	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.222222
12	55787645	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.166667
12	55792509	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.15
12	55792510	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.15
8	55889437	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55889438	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55890004	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.257143
8	55890005	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.162162
8	55890019	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.130435
8	55890063	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0789474
8	55890075	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0857143
8	55890076	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0540541
8	55890189	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0740741
8	55890198	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0714286
8	55890218	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.208333
8	55890232	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.208333
8	55890237	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.15625
8	55891231	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.333333
8	55891232	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.722222
8	55891241	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.111111
8	55891258	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3
8	55891272	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.16
8	55891273	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0952381
8	55891343	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.153846
7	55892199	A->G	+	ENSG00000249773	AC092647.5	protein_coding	Intergenic	.	.	Alu	0.181818
8	55896173	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.25641
8	55896195	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0769231
8	55896778	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55896819	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.217391
8	55896879	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.294118
8	55896881	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.125
8	55904670	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.142857
8	55906537	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.5
8	55906540	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55906687	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.121212
8	55906691	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.181818
8	55906694	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.272727
8	55906695	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.205882
8	55916927	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.153846
8	55917056	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.5
8	55917057	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.666667
8	55917070	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55917098	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.428571
8	55917126	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.181818
8	55917279	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.1875
8	55917311	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3125
8	55917325	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.266667
8	55917333	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.583333
8	55917347	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.181818
8	55917357	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.125
8	55917373	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.133333
8	55917384	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.470588
8	55922647	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3
8	55922652	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3
4	55960985	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0666667
4	55960986	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.258065
4	55960999	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0606061
4	55961045	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.172414
4	55961503	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.235294
4	55961526	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0833333
4	55961537	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0487805
4	55961575	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.114286
4	55961578	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0645161
4	55961594	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.28
4	55961600	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.157895
4	55961603	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.111111
4	55961607	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.111111
4	55961644	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.190476
4	55961716	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.133333
4	55961719	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.2
4	55962180	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.166667
4	55962229	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.25
4	55962239	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.666667
4	55962347	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.352941
4	55962361	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.133333
4	55962370	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.133333
4	55962374	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.166667
4	55976150	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.692308
7	55985499	A->G	+	ENSG00000146729	NIPSNAP2	protein_coding	Intergenic	.	.	Alu	0.1
7	55985558	A->G	+	ENSG00000146729	NIPSNAP2	protein_coding	Intergenic	.	.	Alu	0.142857
7	55986127	A->G	+	ENSG00000146729	NIPSNAP2	protein_coding	Intergenic	.	.	Alu	0.0555556
8	56000657	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
7	56010712	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
4	56056648	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	0.388889
7	56064695	A->G	+	ENSG00000129103	SUMF2	protein_coding	Intergenic	.	.	Alu	0.166667
7	56064763	A->G	+	ENSG00000129103	SUMF2	protein_coding	Intergenic	.	.	Alu	0.2
8	56068901	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.181818
8	56068904	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.166667
8	56068914	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.75
8	56068968	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.181818
8	56068973	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.285714
8	56068976	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.133333
8	56068991	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.615385
8	56069001	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.142857
7	56097999	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
7	56098004	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
7	56098721	A->G	-	.	.	.	Intergenic	.	.	Alu	0.176471
7	56099399	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0869565
7	56099416	A->G	-	.	.	.	Intergenic	.	.	Alu	0.12
12	56313682	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.333333
12	56313711	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.111111
12	56313731	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.24
12	56313735	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.0909091
12	56313739	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	56313745	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.85
12	56314104	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.266667
12	56314106	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.142857
12	56352540	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.2
12	56353046	A->G	-	ENSG00000170581	STAT2	protein_coding	Intergenic	.	.	Alu	0.3
16	56443207	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.181818
16	56443215	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.181818
16	56443244	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.166667
16	56443309	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.2
16	56443314	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.7
16	56443389	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.153846
16	56443446	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.125
16	56443453	A->G	-	ENSG00000167005	NUDT21	protein_coding	Intergenic	.	.	Alu	0.307692
4	56473740	A->G	+	ENSG00000174780	SRP72	protein_coding	Intergenic	.	.	Alu	0.181818
12	56608947	A->G	-	ENSG00000076108	BAZ2A	protein_coding	Intergenic	.	.	Alu	0.230769
12	56608989	A->G	-	ENSG00000076108	BAZ2A	protein_coding	Intergenic	.	.	Alu	0.142857
12	56609012	A->G	-	ENSG00000076108	BAZ2A	protein_coding	Intergenic	.	.	Alu	0.1875
18	56611761	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0714286
18	56611783	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.05
18	56611791	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0625
18	56611799	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.075
18	56611818	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.108108
18	56611822	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0588235
18	56611946	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.133333
18	56611973	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.214286
18	56611987	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.272727
18	56612113	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.173913
18	56612123	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0952381
18	56612139	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.222222
18	56612146	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.15
12	56731292	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.15
12	56731344	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.105263
12	56731348	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.166667
12	56731351	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.631579
12	56731356	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.166667
12	56731396	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.45
12	56731397	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.157895
12	56731426	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.111111
12	56731436	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.4
12	56731437	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.272727
12	56731460	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.133333
12	56731462	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.625
12	56731463	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.5625
4	56940106	A->G	+	ENSG00000084093	REST	protein_coding	Intergenic	.	.	Alu	0.166667
15	56970386	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.384615
4	56992338	A->G	+	ENSG00000047315	POLR2B	protein_coding	Intergenic	.	.	Alu	0.142857
15	56998407	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.117647
12	57068420	A->G	-	ENSG00000166881	NEMP1	protein_coding	Intergenic	.	.	Alu	0.133333
4	57084883	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.1
4	57084923	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.166667
4	57084929	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.3
4	57084935	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.272727
4	57085039	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.0952381
15	57097885	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.105263
15	57097946	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.133333
15	57098110	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.105263
15	57098145	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.111111
15	57098180	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.105263
4	57108679	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.166667
15	57153950	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.214286
16	57177328	A->G	-	ENSG00000172775	FAM192A	protein_coding	Intergenic	.	.	Alu	0.2
5	57219867	A->G	+	ENSG00000062194	GPBP1	protein_coding	Intergenic	.	.	Alu	0.105263
5	57229054	A->G	+	ENSG00000062194	GPBP1	protein_coding	Intergenic	.	.	Alu	0.285714
5	57229084	A->G	+	ENSG00000062194	GPBP1	protein_coding	Intergenic	.	.	Alu	0.181818
5	57229111	A->G	+	ENSG00000062194	GPBP1	protein_coding	Intergenic	.	.	Alu	0.153846
17	57304095	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.190476
17	57304103	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.176471
17	57304104	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.421053
17	57304192	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.545455
17	57304201	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
12	57325648	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.3
17	57409775	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.117647
17	57409845	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.25
17	57409861	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.176471
17	57409887	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.117647
17	57409888	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.210526
17	57409897	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	57409914	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.318182
17	57409929	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.130435
17	57409968	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.227273
17	57450591	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57450592	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.411765
17	57450610	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.357143
17	57450626	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.454545
17	57460221	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.214286
17	57504766	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.357143
17	57504793	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.333333
17	57504800	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.333333
17	57504820	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.222222
17	57504824	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.105263
3	57567921	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
3	57567948	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
3	57569409	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
3	57569439	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
3	57569446	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
3	57569456	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	57569482	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
3	57569590	A->G	+	.	.	.	Intergenic	.	.	Alu	0.409091
3	57569617	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
3	57569618	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
3	57569624	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	57569630	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
3	57569711	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
3	57569761	A->G	+	.	.	.	Intergenic	.	.	Alu	0.357143
3	57569764	A->G	+	.	.	.	Intergenic	.	.	Alu	0.642857
3	57569765	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
3	57579068	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.153846
3	57579077	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.428571
3	57579405	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.285714
3	57579453	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.4
3	57580611	A->G	-	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.166667
3	57587140	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.2
3	57587141	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.133333
3	57587196	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.142857
3	57591605	A->G	-	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.5
17	57618472	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.6
17	57647167	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.2
17	57647228	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.230769
17	57647338	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.35
17	57647361	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.115385
17	57647370	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.09375
17	57647393	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.916667
17	57647394	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.75
17	57647401	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57647409	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0833333
17	57647414	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.130435
3	57677533	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.105263
3	57677551	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.08
3	57677552	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.217391
3	57677557	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.0740741
3	57677574	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.25
3	57677611	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.166667
3	57677612	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.166667
3	57677682	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.263158
11	57723362	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.210526
11	57723363	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.105263
11	57723403	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.2
11	57724778	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.166667
11	57724907	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.2
11	57730307	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.2
11	57734490	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.181818
11	57736767	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.142857
11	57748468	A->G	+	ENSG00000233436	BTBD18	protein_coding	Intergenic	.	.	Alu	0.2
19	57750364	A->G	+	ENSG00000269026	AC003006.1	protein_coding	Intergenic	.	.	Alu	0.454545
3	57762114	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.133333
3	57762115	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.235294
3	57762157	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.285714
3	57762183	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.153846
3	57762211	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.153846
11	57770400	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.181818
3	57775471	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.133333
3	57775603	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.272727
3	57775609	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.166667
3	57775635	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.263158
3	57775825	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.454545
3	57775838	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.153846
19	57812107	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.2
19	57812186	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.6
3	57855298	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.0952381
3	57855299	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.1
19	57866820	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.2
19	57866876	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.181818
19	57866878	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.2
19	57866917	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.4
19	57866918	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.5
19	57866969	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.230769
19	57866981	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.538462
19	57866997	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.3
14	58217459	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.0833333
14	58222715	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.125
14	58222720	A->G	+	ENSG00000131966	ACTR10	protein_coding	Intergenic	.	.	Alu	0.1875
19	58265950	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.25
19	58265998	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.181818
19	58266034	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.307692
19	58266040	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.153846
19	58266085	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.230769
19	58266086	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.384615
19	58267136	A->G	+	ENSG00000268201	AC020915.2	sense_intronic	Intergenic	.	.	Alu	0.363636
19	58272103	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.166667
19	58272400	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.181818
19	58272814	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.2
19	58272823	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.363636
19	58275984	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.3
14	58276960	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.105263
14	58276966	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.214286
14	58277077	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.0714286
14	58277084	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.153846
14	58277110	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.0869565
14	58277350	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.105263
14	58277374	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.444444
14	58277375	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.368421
19	58314500	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.333333
19	58314506	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.538462
19	58314520	A->G	+	ENSG00000283515	AC020915.5	protein_coding	Intergenic	.	.	Alu	0.166667
14	58322855	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.181818
20	58324715	A->G	+	ENSG00000124209	RAB22A	protein_coding	Intergenic	.	.	Alu	0.25
20	58324716	A->G	+	ENSG00000124209	RAB22A	protein_coding	Intergenic	.	.	Alu	0.25
20	58324720	A->G	+	ENSG00000124209	RAB22A	protein_coding	Intergenic	.	.	Alu	0.166667
20	58324746	A->G	+	ENSG00000124209	RAB22A	protein_coding	Intergenic	.	.	Alu	0.238095
17	58340588	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58340593	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58340842	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.166667
17	58340886	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.384615
17	58340952	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.125
17	58341519	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58341681	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.4375
17	58341750	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.1875
17	58341780	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.117647
17	58341782	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.111111
17	58341783	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.333333
17	58341786	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.111111
17	58341815	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.75
17	58341830	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.214286
17	58341856	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
3	58342444	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.1875
17	58346677	A->G	+	ENSG00000213246	SUPT4H1	protein_coding	Intergenic	.	.	Alu	0.117647
17	58346678	A->G	+	ENSG00000213246	SUPT4H1	protein_coding	Intergenic	.	.	Alu	0.117647
14	58363535	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.4
14	58363541	A->G	+	ENSG00000032219	ARID4A	protein_coding	Intergenic	.	.	Alu	0.272727
14	58374320	A->G	+	ENSG00000258658	AL139021.2	antisense	Intergenic	.	.	Alu	0.2
14	58374408	A->G	+	ENSG00000258658	AL139021.2	antisense	Intergenic	.	.	Alu	0.117647
14	58374435	A->G	+	ENSG00000258658	AL139021.2	antisense	Intergenic	.	.	Alu	0.1
14	58374500	A->G	+	ENSG00000258658	AL139021.2	antisense	Intergenic	.	.	Alu	0.3
14	58374797	A->G	+	ENSG00000258658	AL139021.2	antisense	Intergenic	.	.	Alu	0.2
3	58389753	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.181818
19	58564981	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.133333
19	58565045	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.285714
20	58683624	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	0.2
20	58684010	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	0.636364
20	58684029	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	0.125
15	58904065	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.133333
15	58924042	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.142857
15	58924047	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.142857
15	58926645	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.0689655
15	58926717	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.05
15	58926841	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.133333
15	58926846	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.166667
8	59086107	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.111111
8	59086114	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.111111
8	59086124	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.15
8	59086264	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.142857
8	59086266	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.133333
14	59201494	A->G	+	ENSG00000100592	DAAM1	protein_coding	Intergenic	.	.	Alu	0.2
14	59201495	A->G	+	ENSG00000100592	DAAM1	protein_coding	Intergenic	.	.	Alu	0.181818
17	59203459	A->G	+	ENSG00000068489	PRR11	protein_coding	Intergenic	.	.	Alu	0.434783
17	59204795	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.0491803
11	59583740	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.285714
11	59583779	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.241379
11	59583784	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.172414
17	59586545	A->G	+	ENSG00000108406	DHX40	protein_coding	Intergenic	.	.	Alu	0.3
17	59588152	A->G	+	ENSG00000108406	DHX40	protein_coding	Intergenic	.	.	Alu	0.181818
11	59592868	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.166667
11	59593001	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.105263
11	59593017	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.142857
11	59593087	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.166667
17	59739577	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.2
17	59744299	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.176471
13	59762151	A->G	-	ENSG00000139734	DIAPH3	protein_coding	Intergenic	.	.	Alu	0.3
17	59774323	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.25
17	59901411	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.166667
17	59901423	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.25
17	59901782	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.25
17	59901835	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.416667
10	59902490	A->G	-	ENSG00000108091	CCDC6	protein_coding	Intergenic	.	.	Alu	0.166667
17	59961201	A->G	-	ENSG00000189050	RNFT1	protein_coding	Intergenic	.	.	Alu	0.2
14	60272473	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.0869565
14	60272588	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.107143
3	60377300	A->G	-	ENSG00000189283	FHIT	protein_coding	Intergenic	.	.	Alu	0.2
3	60377385	A->G	-	ENSG00000189283	FHIT	protein_coding	Intergenic	.	.	Alu	0.214286
8	60518535	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.129032
8	60518536	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.129032
8	60518571	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.1
17	60519094	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.133333
17	60519214	A->G	-	ENSG00000062725	APPBP2	protein_coding	Intergenic	.	.	Alu	0.333333
8	60526798	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.2
8	60526849	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.1875
8	60586699	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.25
8	60586826	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.263158
8	60586829	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.157895
8	60586831	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.105263
8	60586854	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.2
2	60904632	A->G	+	ENSG00000162924	REL	protein_coding	Intergenic	.	.	Alu	0.2
2	60904633	A->G	+	ENSG00000162924	REL	protein_coding	Intergenic	.	.	Alu	0.2
17	61175971	A->G	+	ENSG00000141376	BCAS3	protein_coding	Intergenic	.	.	Alu	0.2
2	61196404	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.2
2	61196497	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
2	61196583	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.3
2	61201441	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.3
2	61269369	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.222222
2	61269439	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
11	61319440	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.136364
11	61319620	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.142857
11	61319703	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.545455
11	61320338	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.0625
2	61353452	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
2	61353507	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.105263
2	61359882	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.142857
2	61359891	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.111111
2	61359896	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.333333
2	61359913	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.111111
2	61359984	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.357143
14	61360385	A->G	+	ENSG00000027075	PRKCH	protein_coding	Intergenic	.	.	Alu	0.117647
14	61362193	A->G	+	ENSG00000027075	PRKCH	protein_coding	Intergenic	.	.	Alu	0.142857
5	61378830	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.6
5	61378906	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.133333
5	61378916	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.647059
5	61378925	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.166667
5	61378938	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.733333
5	61378952	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.1875
5	61378960	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.111111
5	61378970	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.1
5	61379031	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.285714
5	61379102	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.277778
5	61379106	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.777778
5	61379113	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.777778
5	61379114	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.111111
5	61379122	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.263158
5	61382755	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.2
2	61454687	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.25
2	61454688	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.1
2	61454743	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.142857
2	61454822	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.133333
2	61503051	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	61503151	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.2
2	61503175	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.214286
2	61503176	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.214286
2	61503243	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.2
2	61511931	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	61512002	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	61528055	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	61528094	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.125
2	61528103	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	61528109	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	61528162	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	1
1	61697471	A->G	-	ENSG00000162604	TM2D1	protein_coding	Intergenic	.	.	Alu	0.181818
1	61697484	A->G	-	ENSG00000162604	TM2D1	protein_coding	Intergenic	.	.	Alu	0.125
14	61742676	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.181818
14	61742685	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.181818
14	61742753	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.2
17	61787756	A->G	-	ENSG00000136492	BRIP1	protein_coding	Intergenic	.	.	Alu	0.181818
17	61836243	A->G	-	ENSG00000136492	BRIP1	protein_coding	Intergenic	.	.	Alu	0.153846
17	61998657	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.107143
17	61998660	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.153846
17	61998665	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0869565
17	61998672	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0769231
17	61998696	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.111111
17	61998697	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.117647
17	61998721	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0625
17	61998724	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.393939
17	61998744	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0882353
17	61998746	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0625
17	61998815	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.148148
17	61998817	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.178571
17	61998836	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0952381
17	61998880	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.388889
17	61998885	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.470588
17	62020521	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.2
12	62262158	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.3
5	62323113	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.181818
5	62323136	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.137931
5	62323145	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0869565
5	62323205	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.25
5	62323244	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0625
5	62323402	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.0645161
5	62323465	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.117647
5	62330104	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.181818
12	62330507	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0625
12	62330692	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0769231
12	62330783	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0769231
12	62330823	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0434783
12	62330859	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0784314
12	62330868	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0363636
12	62332043	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.227273
12	62332053	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.105263
12	62394657	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.25
17	62497115	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.4
17	62497119	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.2
17	62497167	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.133333
17	62518457	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.153846
17	62518528	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.153846
11	62619629	A->G	-	ENSG00000149541	B3GAT3	protein_coding	Intergenic	.	.	Alu	0.666667
11	62619639	A->G	-	ENSG00000149541	B3GAT3	protein_coding	Intergenic	.	.	Alu	0.272727
11	62619670	A->G	-	ENSG00000149541	B3GAT3	protein_coding	Intergenic	.	.	Alu	0.181818
11	62819831	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
11	62820660	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
11	62820673	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
11	62820715	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
11	62822280	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.3
11	62823197	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.3
11	62823205	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.0909091
11	62823208	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.210526
11	62823272	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.421053
11	62823273	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.375
11	62823442	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.142857
11	62823448	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.157895
11	62823450	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.111111
11	62823789	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
2	62956657	A->G	+	ENSG00000115504	EHBP1	protein_coding	Intergenic	.	.	Alu	0.2
8	63195941	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.25
8	63196137	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.2
8	63196306	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.130435
8	63196307	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.26087
8	63196442	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.0882353
8	63196468	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.0869565
15	63229660	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.08
15	63229661	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.2
15	63229674	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.115385
10	63249748	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.363636
14	63489548	A->G	-	ENSG00000154001	PPP2R5E	protein_coding	Intergenic	.	.	Alu	0.230769
14	63489628	A->G	-	ENSG00000154001	PPP2R5E	protein_coding	Intergenic	.	.	Alu	0.25
14	63489629	A->G	-	ENSG00000154001	PPP2R5E	protein_coding	Intergenic	.	.	Alu	0.416667
10	63493358	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.25
10	63493359	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.214286
10	63493446	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.25
10	63510132	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.2
10	63510284	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.4
15	63545714	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.363636
15	63545736	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.3
15	63545762	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.142857
15	63545785	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.1875
15	63545793	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63545850	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.277778
15	63545873	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.133333
15	63545891	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.125
15	63545896	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.210526
15	63545910	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.4
15	63546807	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.6
15	63546870	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.230769
15	63546882	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.333333
15	63547458	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.15
15	63547475	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63547490	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0952381
15	63547491	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.190476
15	63547548	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.190476
15	63547609	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0645161
15	63547655	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.294118
15	63547923	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63548000	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.117647
15	63548026	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0967742
15	63548031	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	1
15	63548194	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.142857
15	63548234	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63548283	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.25
15	63548419	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.3
15	63548426	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.125
15	63548590	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.105263
15	63548811	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.111111
15	63548812	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.1875
15	63548833	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
17	63551973	A->G	+	ENSG00000136485	DCAF7	protein_coding	Intergenic	.	.	Alu	0.125
15	63578491	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.133333
12	63588850	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.666667
12	63588882	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.291667
12	63588892	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	1
12	63589048	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.3
17	63642861	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.285714
17	63642884	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.3
17	63642891	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.416667
17	63643032	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.266667
17	63672099	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.214286
15	63675996	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.277778
15	63676000	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.1875
15	63676001	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.1875
15	63676015	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.133333
15	63676058	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.166667
15	63693408	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.2
15	63693412	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.153846
17	63724322	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.117647
17	63724325	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.133333
17	63725531	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.7
17	63725534	A->G	-	ENSG00000125695	AC046185.1	protein_coding	Intergenic	.	.	Alu	0.272727
15	63739319	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.153846
15	63739704	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.272727
15	63739727	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.3
15	63740079	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.181818
15	63773799	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.909091
15	63789362	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.117647
15	63789363	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.411765
9	63819075	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	63840417	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.230769
17	63840420	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.461538
17	63840446	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.266667
17	63840453	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.928571
17	63840455	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.153846
20	63881112	A->G	+	ENSG00000101150	TPD52L2	protein_coding	Intergenic	.	.	Alu	0.2
20	63881241	A->G	+	ENSG00000101150	TPD52L2	protein_coding	Intergenic	.	.	Alu	0.2
15	64098432	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64098461	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.2
15	64098466	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.181818
15	64098515	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.111111
15	64098605	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0833333
15	64098611	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.136364
15	64098665	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64099886	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.2
15	64100324	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.294118
15	64100330	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.111111
15	64100347	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0625
15	64100390	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.142857
15	64100423	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.142857
15	64100424	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	64100438	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	64100440	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	64100453	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.1875
15	64100479	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.166667
15	64100480	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.15
15	64100485	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.105263
15	64100506	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.142857
15	64100526	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	64100546	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.148148
15	64101070	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.307692
15	64105088	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.2
15	64108894	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.125
15	64108900	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.1875
15	64109121	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.115385
15	64109187	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.36
15	64109206	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.117647
15	64109252	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.263158
15	64109275	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	64109797	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64109798	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.153846
2	64139341	A->G	-	ENSG00000197329	PELI1	protein_coding	Intergenic	.	.	Alu	0.1
2	64139568	A->G	-	ENSG00000197329	PELI1	protein_coding	Intergenic	.	.	Alu	0.272727
11	64187858	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.2
11	64187894	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	1
11	64187920	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.142857
11	64188411	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.4
11	64188437	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.181818
11	64188488	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.133333
11	64188543	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.181818
7	64345476	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.133333
7	64345481	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.285714
7	64345519	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.166667
7	64345567	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.6
7	64345568	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.8
7	64345655	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.2
7	64345659	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.538462
15	64370193	A->G	-	ENSG00000166803	PCLAF	protein_coding	Intergenic	.	.	Alu	0.181818
15	64370322	A->G	-	ENSG00000166803	PCLAF	protein_coding	Intergenic	.	.	Alu	0.272727
12	64460574	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.214286
12	64460607	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.0740741
12	64460611	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.08
12	64460657	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.16
12	64460687	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.1
12	64463251	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.142857
12	64463257	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.2
12	64463312	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.605263
12	64463363	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.142857
12	64463430	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.142857
12	64463492	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.352941
12	64463517	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.25
12	64463544	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.384615
15	64469143	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.142857
15	64537457	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.357143
2	64546032	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.2
2	64547839	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.266667
2	64547855	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.272727
2	64547924	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.181818
2	64547950	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.2
2	64547953	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.2
2	64564515	A->G	+	ENSG00000119844	AFTPH	protein_coding	Intergenic	.	.	Alu	0.4
17	64576963	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.3
12	64629843	A->G	+	ENSG00000225195	AC078962.1	sense_intronic	Intergenic	.	.	Alu	0.2
12	64629844	A->G	+	ENSG00000225195	AC078962.1	sense_intronic	Intergenic	.	.	Alu	0.5
17	64638163	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.181818
17	64638168	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.3
17	64646203	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.272727
17	64650287	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.133333
17	64650296	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.391304
17	64650309	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.117647
17	64655366	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.25
17	64655395	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.277778
17	64655396	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.277778
17	64655422	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.2
17	64655461	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.142857
17	64655462	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	64655471	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.157895
17	64655491	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.176471
5	64756723	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.333333
5	64756829	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.3
5	64758037	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.235294
11	64795017	A->G	-	ENSG00000168067	MAP4K2	protein_coding	Intergenic	.	.	Alu	0.2
7	64916392	A->G	+	ENSG00000198039	ZNF273	protein_coding	Intergenic	.	.	Alu	0.2
1	64940413	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.157895
1	64940427	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.125
1	64951854	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	64951855	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	64951886	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.142857
1	64951913	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.24
1	64951929	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	64955254	A->G	-	ENSG00000166839	ANKDD1A	protein_coding	Intergenic	.	.	Alu	0.181818
15	65011598	A->G	-	ENSG00000103707	MTFMT	protein_coding	Intergenic	.	.	Alu	0.416667
14	65052000	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.8
14	65052068	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.117647
14	65059295	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.142857
14	65067657	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.157895
14	65067746	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.133333
14	65067865	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.142857
14	65067866	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.25
14	65068190	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.2
11	65099073	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.4
2	65125934	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.230769
2	65127473	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.0833333
2	65127475	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.125
2	65127604	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.2
2	65229677	A->G	+	ENSG00000138071	ACTR2	protein_coding	Intergenic	.	.	Alu	0.1
12	65286783	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.153846
12	65286787	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.5
12	65286806	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.4
12	65393486	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.166667
12	65393512	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.105263
12	65395205	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.153846
12	65395233	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.1
15	65542020	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.166667
15	65542114	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.214286
15	65542376	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.105263
15	65542393	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.0909091
15	65542397	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.458333
15	65542453	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.105263
15	65544901	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.333333
15	65549520	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.153846
15	65549583	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.4
15	65549584	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.2
15	65707913	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.307692
15	65707937	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65707967	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65708234	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.166667
15	65719030	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.25
15	65728258	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.153846
15	65728689	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.230769
8	65729596	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.125
8	65729687	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.1875
8	65730235	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.391304
8	65730278	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	65730279	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.5625
8	65730283	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.6875
8	65730286	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.533333
8	65730348	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.142857
8	65730349	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.142857
8	65730350	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.266667
8	65730356	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.461538
8	65730459	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.117647
15	65736356	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.181818
15	65736398	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.111111
8	65736518	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.181818
15	65746472	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.7
15	65746551	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65746555	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65746556	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65753972	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.0909091
11	65774442	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
11	65774509	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
11	65970002	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.153846
11	65974108	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.166667
11	65974151	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.166667
11	65974160	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.153846
11	65974423	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.133333
11	65974425	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.166667
11	65974585	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.166667
11	65974842	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.142857
7	65981118	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.185185
7	65981128	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.0769231
7	65981143	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.285714
7	65981155	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.186047
7	65981343	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.142857
5	65998840	A->G	+	ENSG00000112851	ERBIN	protein_coding	Intergenic	.	.	Alu	0.1
11	66081161	A->G	+	ENSG00000175115	PACS1	protein_coding	Intergenic	.	.	Alu	0.2
11	66081162	A->G	+	ENSG00000175115	PACS1	protein_coding	Intergenic	.	.	Alu	0.2
5	66097239	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
5	66149098	A->G	+	ENSG00000153914	SREK1	protein_coding	Intergenic	.	.	Alu	0.133333
5	66149099	A->G	+	ENSG00000153914	SREK1	protein_coding	Intergenic	.	.	Alu	0.1875
5	66149166	A->G	+	ENSG00000153914	SREK1	protein_coding	Intergenic	.	.	Alu	0.2
7	66155155	A->G	+	ENSG00000234185	AC068533.3	antisense	Intergenic	.	.	Alu	0.3
7	66155156	A->G	+	ENSG00000234185	AC068533.3	antisense	Intergenic	.	.	Alu	0.4
12	66194618	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.272727
12	66194784	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.2
12	66202503	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.115385
12	66202516	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.08
12	66202517	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.111111
12	66202591	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.0666667
12	66202776	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.115385
2	66558098	A->G	+	ENSG00000143995	MEIS1	protein_coding	Intergenic	.	.	Alu	0.153846
2	66558159	A->G	+	ENSG00000143995	MEIS1	protein_coding	Intergenic	.	.	Alu	0.25
11	66629960	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0952381
11	66632772	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.125
11	66635027	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.552632
11	66635032	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0731707
11	66635045	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0731707
11	66635088	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0652174
11	66635105	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.673077
11	66635117	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.107143
11	66635133	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0350877
11	66635154	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.21875
11	66635167	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.241379
11	66635174	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.111111
11	66635248	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.105263
11	66635249	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.307692
11	66635261	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.804348
11	66635263	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.170213
11	66635345	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0526316
11	66635353	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.446809
11	66635360	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.653061
11	66635397	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0363636
11	66635414	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0298507
11	66635423	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.223881
11	66635424	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.521739
11	66635425	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.514706
11	66635436	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.106667
11	66635439	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0571429
11	66635454	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0655738
11	66635467	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.253731
11	66635481	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0375
11	66635490	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.025974
11	66635494	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.138889
11	66635503	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0526316
11	66635507	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.05
11	66635513	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0394737
11	66635521	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0350877
11	66635643	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0625
11	66635644	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.142857
11	66635650	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.346154
11	66635659	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.09375
11	66635692	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0454545
11	66635720	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0327869
11	66635739	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0338983
11	66635746	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0740741
11	66635747	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0377358
11	66635754	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.122807
11	66635772	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.183333
11	66635774	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.12069
11	66635780	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0588235
11	66635781	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0784314
11	66635801	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0555556
11	66636053	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.08
11	66636065	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0833333
11	66636090	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.107143
11	66636109	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0689655
11	66636110	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0967742
11	66636139	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0769231
11	66636149	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.272727
11	66636175	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.142857
11	66636193	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.375
11	66636213	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.333333
11	66636413	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.333333
7	66659297	A->G	+	ENSG00000226824	AC006001.2	sense_intronic	Intergenic	.	.	Alu	0.25
11	66671805	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.181818
11	66671815	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.615385
11	66671821	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.357143
11	66671869	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.153846
11	66671874	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.166667
11	66671879	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.142857
11	66671949	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.166667
11	66671963	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.277778
11	66671999	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.181818
11	66672010	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.117647
11	66672138	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.692308
11	66672151	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.25
11	66672152	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.1875
11	66672221	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.133333
11	66672229	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.230769
11	66672230	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.384615
11	66672231	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.5
11	66672281	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.461538
11	66672289	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.125
11	66672295	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.117647
11	66672307	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.142857
11	66672325	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.416667
11	66672331	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.2
11	66672576	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.307692
11	66672706	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.3
8	66717272	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.2
8	66717449	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.166667
16	66738455	A->G	-	ENSG00000135720	DYNC1LI2	protein_coding	Intergenic	.	.	Alu	0.6
16	66738632	A->G	-	ENSG00000135720	DYNC1LI2	protein_coding	Intergenic	.	.	Alu	0.2
8	66740786	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.166667
8	66740800	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.181818
7	66741883	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.6
7	66741903	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.136364
7	66741948	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.15
7	66742036	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.230769
7	66742040	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.0769231
7	66742057	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.15
7	66742707	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.3
7	66742719	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.272727
7	66743055	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.4
7	66743143	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.3
7	66743146	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.6
7	66743147	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.4
7	66743148	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.3
7	66743386	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.3
7	66744609	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.235294
8	66843761	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.166667
8	66843765	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.272727
8	66843832	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.5
1	66936466	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.107143
1	66936494	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.24
1	66936495	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.304348
1	66936501	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.285714
1	66936507	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.44
1	66936737	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.047619
1	66936745	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	66936746	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.222222
1	66936751	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0638298
1	66936784	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.294118
1	66936789	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.4
1	66936792	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.194444
1	66936813	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.342857
1	66936824	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.5
1	66936872	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.535714
1	66936878	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.37931
1	66936919	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.2
1	66936927	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.142857
1	66936944	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	66937353	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	66937355	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.151515
1	66937377	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.114286
1	66937411	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	66937464	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.146341
1	66937465	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.047619
1	66937505	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.111111
1	66937535	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.122449
1	66975420	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.2
14	67011489	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.117647
11	67125601	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.2
11	67126060	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.142857
11	67126061	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.142857
11	67141546	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.166667
8	67151861	A->G	+	ENSG00000104218	CSPP1	protein_coding	Intergenic	.	.	Alu	0.7
11	67156169	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.105263
15	67160620	A->G	+	ENSG00000166949	SMAD3	protein_coding	Intergenic	.	.	Alu	0.166667
15	67160640	A->G	+	ENSG00000166949	SMAD3	protein_coding	Intergenic	.	.	Alu	0.4
15	67163802	A->G	+	ENSG00000166949	SMAD3	protein_coding	Intergenic	.	.	Alu	0.153846
15	67163805	A->G	+	ENSG00000166949	SMAD3	protein_coding	Intergenic	.	.	Alu	0.230769
15	67163836	A->G	+	ENSG00000166949	SMAD3	protein_coding	Intergenic	.	.	Alu	0.181818
15	67163859	A->G	+	ENSG00000166949	SMAD3	protein_coding	Intergenic	.	.	Alu	0.2
11	67184329	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.2
11	67188271	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.181818
11	67188688	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.2
17	67191679	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	1
17	67195963	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.09375
17	67195989	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.192308
17	67196111	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.105263
17	67196127	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.136364
7	67304128	A->G	-	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	67304138	A->G	-	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	67312468	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.307692
7	67312489	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	67312534	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.363636
7	67312874	A->G	+	ENSG00000106610	STAG3L4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
8	67327378	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.166667
8	67327383	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.125
8	67327401	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.105263
8	67327456	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.125
8	67335178	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.181818
8	67335203	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.2
8	67335217	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.181818
8	67335234	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.1875
17	67351864	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.181818
17	67351914	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.157895
17	67351969	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.7
17	67351988	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.416667
17	67352011	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.166667
17	67353482	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.230769
17	67353579	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.166667
17	67354755	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.173913
17	67354760	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.136364
17	67354810	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.1
17	67354833	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.125
17	67354862	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.142857
17	67354943	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.318182
17	67354946	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.15
17	67355178	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.108108
17	67355224	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0392157
17	67355229	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.155556
17	67355230	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.288889
17	67355246	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.258065
17	67355268	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0487805
17	67355269	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0769231
17	67355271	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.075
17	67355319	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.0701754
1	67397017	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
16	67566228	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.125
16	67566242	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.285714
16	67566248	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.545455
16	67566249	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.363636
16	67566348	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.444444
16	67566351	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.176471
16	67566353	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.157895
16	67566354	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.111111
16	67566357	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.2
16	67566403	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0909091
16	67566670	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.208333
16	67566681	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.228571
16	67566755	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.181818
16	67566761	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.52381
16	67566786	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.913043
16	67566832	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.136364
16	67566833	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0952381
16	67566845	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.3
16	67567042	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.133333
16	67594263	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.142857
14	67672391	A->G	-	ENSG00000100568	VTI1B	protein_coding	Intergenic	.	.	Alu	0.2
17	67876610	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.538462
17	67876620	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.307692
17	67876793	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.2
17	67882918	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.166667
17	67882923	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.153846
10	67890792	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.153846
10	67890845	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.3
17	67897072	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.230769
17	67897073	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.538462
17	67897078	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.538462
17	67897103	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.263158
17	67897121	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.368421
17	67897140	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.5
17	67897151	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.1875
17	67897194	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.384615
17	67897195	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.166667
17	67897221	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.4
17	67898120	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.214286
17	67898169	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.214286
17	67898247	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.0952381
17	67898303	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.142857
11	68093216	A->G	-	ENSG00000110721	CHKA	protein_coding	Intergenic	.	.	Alu	0.181818
11	68093217	A->G	-	ENSG00000110721	CHKA	protein_coding	Intergenic	.	.	Alu	0.125
17	68117510	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
17	68117591	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
15	68119145	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.1
17	68121585	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
17	68123823	A->G	+	.	.	.	Intergenic	.	.	Alu	0.636364
15	68132348	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.181818
15	68132354	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.307692
15	68138029	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	68138039	A->G	+	ENSG00000033800	PIAS1	protein_coding	Intergenic	.	.	Alu	0.133333
2	68202497	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.135135
2	68202563	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0416667
2	68202931	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.115385
2	68202935	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.05
2	68202941	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.119048
2	68202959	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0967742
2	68202967	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0666667
11	68204659	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.3
11	68204712	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.454545
11	68204754	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.5
11	68204755	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.2
2	68205328	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0833333
2	68205380	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.121212
2	68205381	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.114286
2	68205412	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	68205445	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0714286
2	68205451	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0740741
2	68205508	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.125
2	68245114	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.3
2	68245179	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.6
2	68245188	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.25
2	68245275	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.363636
2	68245336	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.3
2	68246142	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.137931
2	68246151	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0769231
2	68246171	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.08
2	68246186	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.12
2	68246199	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.375
2	68246212	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.241379
2	68246213	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.137931
2	68246239	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.3125
2	68246244	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0769231
2	68246288	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0810811
2	68246295	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.368421
2	68246345	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.545455
2	68246346	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.44186
10	68399272	A->G	-	ENSG00000204130	RUFY2	protein_coding	Intergenic	.	.	Alu	0.2
11	68463222	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	68463249	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0769231
11	68486403	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.2
11	68493565	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.133333
11	68493988	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.162162
11	68494348	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0909091
10	68497754	A->G	-	ENSG00000122912	SLC25A16	protein_coding	Intergenic	.	.	Alu	0.307692
10	68497888	A->G	-	ENSG00000122912	SLC25A16	protein_coding	Intergenic	.	.	Alu	0.2
11	68533450	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.105263
11	68533451	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.1
11	68533594	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.238095
11	68533601	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	68533620	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.26087
11	68533637	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.157895
11	68533646	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.238095
11	68533650	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.133333
12	68613100	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0444444
12	68613174	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0540541
12	68613176	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0540541
12	68613213	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0454545
12	68613239	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0909091
12	68613240	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.113636
12	68623751	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.117647
12	68637326	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0606061
12	68637348	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0434783
12	68637365	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.159091
12	68637396	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0666667
12	68637401	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.133333
12	68637402	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0588235
12	68637414	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0882353
12	68637422	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0666667
12	68637433	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.25
12	68637437	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.176471
12	68637438	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.176471
12	68637439	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.117647
12	68637440	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0588235
12	68637445	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.138889
12	68637450	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.162162
12	68637454	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.2
12	68637466	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.142857
12	68637476	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0943396
12	68637477	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.148148
12	68637512	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0833333
12	68637517	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.314286
12	68637518	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.242424
12	68637587	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0952381
12	68694652	A->G	+	ENSG00000111581	NUP107	protein_coding	Intergenic	.	.	Alu	0.2
10	68760613	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.125
10	68760614	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.1875
10	68760640	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.105263
10	68760652	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.2
10	68760668	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.230769
10	68760677	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.214286
10	68760681	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.153846
10	68760683	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.142857
10	68760702	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.1875
10	68760711	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.1
10	68760743	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.407407
10	68760744	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.481481
10	68760749	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.0769231
10	68760770	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.210526
11	68769352	A->G	-	ENSG00000110090	CPT1A	protein_coding	Intergenic	.	.	Alu	0.181818
11	68769353	A->G	-	ENSG00000110090	CPT1A	protein_coding	Intergenic	.	.	Alu	0.363636
11	68769375	A->G	-	ENSG00000110090	CPT1A	protein_coding	Intergenic	.	.	Alu	0.181818
10	68769826	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.142857
10	68920900	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.3
10	68976093	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.333333
10	68976097	A->G	+	ENSG00000165732	DDX21	protein_coding	Intergenic	.	.	Alu	0.142857
3	69075834	A->G	-	ENSG00000144744	UBA3	protein_coding	Intergenic	.	.	Alu	0.142857
3	69075883	A->G	-	ENSG00000144744	UBA3	protein_coding	Intergenic	.	.	Alu	0.2
3	69076695	A->G	-	ENSG00000144744	UBA3	protein_coding	Intergenic	.	.	Alu	0.142857
10	69151332	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.230769
3	69215430	A->G	-	ENSG00000114541	FRMD4B	protein_coding	Intergenic	.	.	Alu	0.4
12	69244997	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.214286
16	69323748	A->G	+	ENSG00000132612	VPS4A	protein_coding	Intergenic	.	.	Alu	0.3
16	69323749	A->G	+	ENSG00000132612	VPS4A	protein_coding	Intergenic	.	.	Alu	0.25
16	69323829	A->G	+	ENSG00000132612	VPS4A	protein_coding	Intergenic	.	.	Alu	0.6
16	69345552	A->G	+	ENSG00000157315	TMED6	protein_coding	Intergenic	.	.	Alu	0.272727
16	69345562	A->G	+	ENSG00000157315	TMED6	protein_coding	Intergenic	.	.	Alu	0.6
16	69345563	A->G	+	ENSG00000157315	TMED6	protein_coding	Intergenic	.	.	Alu	0.5
16	69345576	A->G	+	ENSG00000157315	TMED6	protein_coding	Intergenic	.	.	Alu	0.416667
16	69354824	A->G	-	ENSG00000260371	AC026464.3	protein_coding	Intergenic	.	.	Alu	0.75
16	69354835	A->G	-	ENSG00000260371	AC026464.3	protein_coding	Intergenic	.	.	Alu	0.545455
12	69540132	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.0833333
12	69545600	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.181818
12	69545610	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.111111
12	69545637	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.0769231
12	69545681	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.111111
16	69598319	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.25
16	69598335	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.285714
16	69598955	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.142857
16	69598965	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.111111
16	69643146	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.0769231
7	69695230	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.166667
16	69807539	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.2
16	69809648	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.166667
16	69809657	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.2
16	69809683	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.166667
2	69858892	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.153846
2	69858893	A->G	+	ENSG00000087338	GMCL1	protein_coding	Intergenic	.	.	Alu	0.153846
2	69928803	A->G	+	ENSG00000059728	MXD1	protein_coding	Intergenic	.	.	Alu	0.25
16	69995493	A->G	-	ENSG00000226232	NPIPB14P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.117647
16	69995499	A->G	-	ENSG00000226232	NPIPB14P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.263158
16	69999929	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.125
16	69999985	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.166667
16	70009759	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.454545
16	70009763	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.272727
16	70009772	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.272727
16	70009786	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.692308
16	70009812	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.181818
16	70009822	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.4375
16	70010040	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.545455
16	70010409	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.272727
16	70010445	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.416667
16	70010447	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.2
16	70035597	A->G	-	ENSG00000255185	PDXDC2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
X	70137855	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.0909091
X	70137878	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.194444
X	70137904	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.181818
X	70137931	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.375
X	70137947	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.214286
X	70138016	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.133333
X	70138056	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.291667
X	70138366	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.25
X	70138456	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.125
7	70213471	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.12
2	70217530	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.0869565
2	70217536	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.173913
2	70219563	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.238095
2	70219596	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.230769
2	70219599	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.428571
2	70219849	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.0952381
2	70219850	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.190476
2	70219852	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.428571
2	70219869	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.181818
2	70236337	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.2
2	70236775	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.3
2	70237899	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.2
2	70238376	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.1875
2	70238382	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.214286
2	70238403	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.176471
2	70238409	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.235294
2	70238435	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.25
2	70238443	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.111111
2	70238451	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.105263
2	70238452	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.15
2	70238477	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.142857
12	70254802	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.181818
12	70254861	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.166667
12	70283374	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.25
12	70283447	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.388889
12	70283448	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.166667
2	70290064	A->G	-	ENSG00000143977	SNRPG	protein_coding	Intergenic	.	.	Alu	0.272727
2	70290068	A->G	-	ENSG00000143977	SNRPG	protein_coding	Intergenic	.	.	Alu	0.363636
9	70308473	A->G	+	ENSG00000198887	SMC5	protein_coding	Intergenic	.	.	Alu	0.272727
9	70308515	A->G	+	ENSG00000198887	SMC5	protein_coding	Intergenic	.	.	Alu	0.230769
9	70308527	A->G	+	ENSG00000198887	SMC5	protein_coding	Intergenic	.	.	Alu	0.272727
16	70362272	A->G	+	ENSG00000260537	AC012184.2	protein_coding	Intergenic	.	.	Alu	0.181818
10	70413397	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.142857
10	70414658	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.272727
10	70415108	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.04
10	70415145	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.0588235
7	70440208	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.2
7	70440265	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.363636
7	70440297	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.25
7	70440301	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.416667
7	70440310	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.153846
7	70440314	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.428571
7	70507784	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.166667
4	70715463	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.142857
4	70715464	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.214286
4	70715473	A->G	+	ENSG00000018189	RUFY3	protein_coding	Intergenic	.	.	Alu	0.166667
7	70728489	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.333333
7	70728494	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.3
4	70923687	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.142857
4	70923695	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.133333
4	70923716	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.125
14	70924066	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.230769
14	70924069	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.214286
14	70924098	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.230769
4	70965029	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.166667
4	70965150	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.181818
4	70965218	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.2
4	70965543	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.125
4	70965610	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.181818
X	71057789	A->G	-	ENSG00000147164	SNX12	protein_coding	Intergenic	.	.	Alu	0.6
3	71260707	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71266378	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71266388	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71267869	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0689655
3	71267890	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.125
3	71267894	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.103448
3	71267906	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0769231
3	71267935	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.115385
3	71267936	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	71267941	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.25
3	71267942	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.388889
3	71267966	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.636364
3	71268187	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.416667
3	71268188	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.666667
3	71268231	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.153846
3	71268255	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.111111
3	71277056	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.125
3	71277097	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.190476
3	71277123	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.153846
3	71277163	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.347826
3	71277184	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.0952381
3	71277187	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.0952381
3	71289739	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.15
3	71289744	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.15
3	71289745	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.157895
2	71336291	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.133333
3	71343589	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71343590	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.363636
3	71343648	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.4
3	71343708	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.75
3	71343709	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.727273
3	71343710	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.4
3	71343762	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.117647
3	71343771	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.1875
3	71343801	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	1
3	71343802	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	1
3	71371694	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.454545
3	71371707	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.363636
2	71386219	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.0689655
2	71386254	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.0740741
14	71416937	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.2
14	71417255	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.2
14	71440095	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.3
14	71440105	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.363636
14	71440106	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.727273
14	71440210	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.75
14	71440289	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.9
14	71440295	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.818182
14	71440381	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.285714
14	71440433	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.647059
14	71440498	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.12
14	71440499	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.125
14	71440500	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.166667
14	71440528	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.363636
14	71440563	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.52381
14	71441916	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71441996	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71451498	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71451538	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.111111
14	71451560	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.0909091
14	71453803	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.647059
14	71453808	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.555556
14	71453847	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.368421
14	71453874	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.473684
14	71453890	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.176471
14	71453927	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.333333
14	71453929	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.583333
14	71453940	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.142857
3	71476596	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.142857
3	71476704	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.153846
14	71480687	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.5
5	71537103	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.272727
5	71546436	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	71546497	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.25
5	71546530	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.133333
5	71546538	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.25
5	71546539	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.352941
5	71546543	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.222222
5	71546567	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.214286
5	71546568	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.357143
3	71558606	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.166667
3	71558623	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.157895
3	71558659	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.125
3	71558664	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.105263
3	71558769	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.210526
3	71558941	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.263158
12	71661620	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.266667
12	71661650	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.181818
12	71661653	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.181818
12	71661686	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.333333
12	71774381	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.0714286
12	71774398	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.0540541
12	71774416	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.5
12	71774468	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.0392157
3	71776450	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.2
3	71776456	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.1875
3	71776516	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.208333
3	71776560	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.5
3	71776574	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.384615
3	71776644	A->G	-	ENSG00000163421	PROK2	protein_coding	Intergenic	.	.	Alu	0.166667
12	71850482	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.117647
12	71850487	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0606061
12	71850490	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.09375
12	71850513	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0967742
12	71850525	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.105263
12	71850530	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.333333
12	71850546	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	1
12	71850552	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	1
12	71850554	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.333333
12	71850558	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.1
12	71850734	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.09375
12	71850777	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.111111
12	71850829	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0882353
12	71850836	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0714286
12	71850864	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.576923
12	71850866	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.5
12	71850872	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.266667
12	71850873	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.0689655
12	71850888	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.266667
12	71850889	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.1875
12	71850893	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.178571
12	71850908	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.125
16	71898598	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.111111
16	71898602	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.0952381
16	71900046	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.133333
16	71900123	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.181818
7	72014225	A->G	-	ENSG00000183166	CALN1	protein_coding	Intergenic	.	.	Alu	0.545455
11	72061563	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.666667
11	72061564	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.833333
11	72061602	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.454545
11	72061615	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.5
11	72061651	A->G	-	ENSG00000137497	NUMA1	protein_coding	Intergenic	.	.	Alu	0.2
10	72347103	A->G	-	ENSG00000148719	DNAJB12	protein_coding	Intergenic	.	.	Alu	0.176471
3	72394674	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.2
3	72416140	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.3
3	72416166	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.461538
3	72416657	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.107143
3	72416686	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.148148
3	72416692	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.179487
3	72416695	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.05
3	72416696	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0789474
3	72416701	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.142857
3	72416710	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.097561
3	72416754	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0555556
15	72488979	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	72488987	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.08
15	72488988	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	72505830	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.131579
15	72505853	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0425532
15	72505862	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0454545
15	72505865	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.08
15	72505875	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.122449
15	72505916	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0789474
15	72505936	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.111111
15	72505999	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.210526
15	72506229	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.166667
15	72506230	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0697674
15	72506243	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.452381
15	72506292	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.206897
15	72506295	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0882353
15	72510557	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.15625
15	72510590	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0731707
15	72510616	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.1875
15	72510622	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0816327
15	72510626	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0816327
15	72510643	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0465116
15	72510646	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0434783
15	72510658	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.138889
15	72522285	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.333333
15	72522328	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.105263
15	72522338	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.133333
15	72522361	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.111111
15	72522362	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.111111
15	72522371	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.181818
15	72522394	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.185185
15	72522399	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	72522499	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.166667
15	72575000	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.2
15	72575018	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.210526
15	72575032	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.136364
15	72575443	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0740741
15	72575913	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.642857
15	72575944	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.176471
6	72744690	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.230769
15	72763250	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.222222
15	72779341	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.0952381
15	72779373	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.235294
15	72779381	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.411765
15	72779386	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.125
15	72779433	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.142857
15	72779438	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.181818
15	72779446	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.666667
15	72779509	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.133333
15	72779518	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.2
15	72779540	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.142857
6	72817851	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.15
5	72868311	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.125
13	72957822	A->G	+	ENSG00000083535	PIBF1	protein_coding	Intergenic	.	.	Alu	0.2
7	72981981	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	72981982	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
7	72982000	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	72994477	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.157895
7	72995694	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.111111
7	72995704	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.294118
7	72996913	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.176471
7	72996921	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0952381
7	72996924	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0909091
7	72996927	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.136364
7	72996930	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.333333
7	72996955	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.565217
7	72996966	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.176471
7	72996967	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.176471
7	72996980	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
6	73050096	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.130435
11	73053040	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.125
3	73053648	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.157895
10	73070365	A->G	-	ENSG00000122884	P4HA1	protein_coding	Intergenic	.	.	Alu	0.214286
11	73097147	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.133333
10	73116679	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.7
10	73116946	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.166667
10	73116951	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.181818
10	73129310	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.545455
10	73129337	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.272727
10	73129440	A->G	-	ENSG00000166321	NUDT13	protein_coding	Intergenic	.	.	Alu	0.2
14	73137820	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.133333
11	73138732	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0952381
11	73138740	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0833333
14	73139029	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.357143
14	73139030	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.142857
14	73139105	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.166667
14	73139106	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.166667
14	73139505	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.1
14	73139535	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.157895
10	73143438	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.214286
10	73143439	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.142857
10	73145777	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.125
14	73150859	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.2
14	73150890	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.181818
14	73150921	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.25
14	73150947	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.4
10	73155737	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.375
10	73155738	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.25
10	73155764	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.142857
10	73155803	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.125
10	73155807	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.529412
10	73155808	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.3125
10	73155860	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.4
9	73157385	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.421053
9	73157429	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.1
9	73157434	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.277778
9	73157453	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.2
9	73157463	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.263158
9	73157496	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.1
9	73157534	A->G	+	ENSG00000135046	ANXA1	protein_coding	Intergenic	.	.	Alu	0.130435
10	73165490	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.0952381
6	73165905	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.2
4	73189465	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.307692
4	73189468	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.272727
4	73189489	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.307692
4	73189493	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.181818
4	73189504	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.333333
4	73189521	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.571429
4	73189535	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.846154
4	73189593	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.166667
4	73189598	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.357143
4	73189599	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.357143
4	73189607	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.333333
4	73196137	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.647059
4	73196141	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.384615
4	73196192	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.285714
4	73196193	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.214286
4	73196199	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.384615
4	73196206	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.466667
4	73196264	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.272727
4	73196270	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.5
4	73196271	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.5
4	73226180	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.5
4	73226181	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.230769
4	73226221	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.571429
4	73226491	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.108108
4	73226598	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0909091
4	73226614	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.136364
4	73240989	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.125
4	73241066	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.5
7	73281283	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
14	73286135	A->G	-	ENSG00000133961	NUMB	protein_coding	Intergenic	.	.	Alu	0.7
14	73286162	A->G	-	ENSG00000133961	NUMB	protein_coding	Intergenic	.	.	Alu	0.2
2	73457930	A->G	+	ENSG00000230002	ALMS1-IT1	sense_intronic	Intergenic	.	.	Alu	0.2
10	73480687	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.363636
10	73480740	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.384615
10	73490921	A->G	-	ENSG00000107758	PPP3CB	protein_coding	Intergenic	.	.	Alu	0.2
6	73514305	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	73514311	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
6	73514337	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	73514451	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
6	73514594	A->G	-	.	.	.	Intergenic	.	.	Alu	0.217391
6	73514596	A->G	-	.	.	.	Intergenic	.	.	Alu	0.318182
6	73514607	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
6	73514880	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
11	73574630	A->G	-	ENSG00000054965	FAM168A	protein_coding	Intergenic	.	.	Alu	0.3
11	73574652	A->G	-	ENSG00000054965	FAM168A	protein_coding	Intergenic	.	.	Alu	0.363636
7	73684762	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.3
7	73684803	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.266667
11	73685427	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.214286
7	73685474	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.666667
11	73685488	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.8
11	73693479	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.272727
11	73693506	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.181818
8	73743638	A->G	-	ENSG00000040341	STAU2	protein_coding	Intergenic	.	.	Alu	0.25
8	73855599	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.153846
8	73855600	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.153846
8	73855601	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.142857
8	73855609	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.153846
8	73872998	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.333333
8	73873017	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.461538
8	73873029	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.166667
8	73873043	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.384615
8	73873050	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.428571
8	73873091	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.357143
8	73873181	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.214286
8	73957916	A->G	-	ENSG00000154582	ELOC	protein_coding	Intergenic	.	.	Alu	0.272727
8	73957917	A->G	-	ENSG00000154582	ELOC	protein_coding	Intergenic	.	.	Alu	0.181818
11	73966817	A->G	-	ENSG00000187726	DNAJB13	protein_coding	Intergenic	.	.	Alu	0.7
X	73989748	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.272727
X	73989896	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.5
X	73989897	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.6
2	74052749	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.272727
14	74086424	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.181818
14	74086462	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.818182
14	74086488	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.181818
14	74086491	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.454545
14	74086493	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.181818
14	74086527	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.363636
14	74086604	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.363636
14	74086638	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.263158
14	74086643	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.105263
14	74091583	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.214286
14	74091654	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.157895
14	74091659	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.1
2	74096877	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.3
7	74178318	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.2
7	74178340	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.125
7	74178343	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.333333
7	74178413	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.285714
7	74178423	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.166667
7	74178450	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.25
7	74178465	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.333333
10	74185948	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	1
10	74185987	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.235294
10	74204877	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.25
10	74204878	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.45
10	74204879	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.1
10	74204880	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.15
10	74204929	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.277778
10	74204942	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.533333
10	74204946	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.111111
10	74205555	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.115385
10	74205556	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.0769231
X	74208259	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.214286
X	74208330	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.1875
X	74208349	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.642857
X	74208350	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.8
X	74223730	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.181818
X	74265462	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.5
X	74265468	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.142857
X	74265484	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.230769
X	74265497	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.25
X	74265501	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.1
X	74265502	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.3
X	74265521	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.15
X	74265939	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.297297
X	74265942	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0697674
X	74265949	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0652174
X	74265964	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0540541
X	74265969	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0555556
X	74265972	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.212121
X	74265977	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.3
X	74265998	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.315789
X	74266004	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.37037
X	74266012	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.138889
X	74266028	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0434783
X	74266034	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.116279
X	74266046	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0540541
X	74266054	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.266667
X	74266070	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0625
X	74266090	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.2
X	74266093	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.5
X	74266097	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.142857
X	74266110	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0540541
X	74266120	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.333333
X	74266131	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.103448
X	74266144	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.142857
X	74266145	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.142857
X	74266153	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.5
X	74266158	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.107143
X	74266294	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.173913
X	74266317	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.208333
X	74266318	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.428571
X	74266333	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.16
X	74266339	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
X	74266394	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.111111
X	74266407	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.111111
X	74266408	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.190476
X	74266411	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.708333
X	74266428	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0740741
X	74266463	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.321429
X	74266476	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0714286
X	74266484	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.2
X	74266485	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0952381
X	74266507	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.185185
11	74395510	A->G	-	ENSG00000165434	PGM2L1	protein_coding	Intergenic	.	.	Alu	0.222222
11	74396686	A->G	-	ENSG00000165434	PGM2L1	protein_coding	Intergenic	.	.	Alu	0.5
16	74642201	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.2
16	74642403	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.142857
16	74645632	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.2
16	74645954	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.15
16	74645958	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.105263
16	74646020	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.357143
16	74646029	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.230769
14	74677457	A->G	-	ENSG00000119682	AREL1	protein_coding	Intergenic	.	.	Alu	0.2
7	74704368	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	0.7
7	74704635	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	0.571429
7	74704640	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	0.4
7	74704643	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	1
7	74704688	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	0.3
7	74704705	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	0.2
7	74704733	A->G	+	ENSG00000263001	GTF2I	protein_coding	Intergenic	.	.	Alu	0.3
11	74752466	A->G	+	ENSG00000166439	RNF169	protein_coding	Intergenic	.	.	Alu	0.153846
14	74834115	A->G	+	ENSG00000119596	YLPM1	protein_coding	Intergenic	.	.	Alu	0.0869565
14	74834116	A->G	+	ENSG00000119596	YLPM1	protein_coding	Intergenic	.	.	Alu	0.0869565
14	74834120	A->G	+	ENSG00000119596	YLPM1	protein_coding	Intergenic	.	.	Alu	0.08
10	74845035	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.4
10	74845053	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.428571
10	74845108	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.117647
10	74845610	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.0909091
10	74845663	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.166667
10	74845670	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.363636
10	74856780	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.136364
10	74856790	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.214286
10	74856845	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.363636
7	74878777	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	74878778	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	74879105	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
7	74879175	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3125
7	74880354	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
7	74880419	A->G	-	.	.	.	Intergenic	.	.	Alu	0.642857
7	74880420	A->G	-	.	.	.	Intergenic	.	.	Alu	0.357143
7	74880505	A->G	-	.	.	.	Intergenic	.	.	Alu	0.727273
7	74880515	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
7	74880525	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
9	74951429	A->G	-	ENSG00000135045	C9orf40	protein_coding	Intergenic	.	.	Alu	0.166667
9	74951438	A->G	-	ENSG00000135045	C9orf40	protein_coding	Intergenic	.	.	Alu	0.2
7	74986344	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	1
7	74986370	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.363636
7	74986371	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.416667
7	74986380	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.266667
16	75026749	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.3
16	75026750	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.3
7	75104371	A->G	+	ENSG00000174428	GTF2IRD2B	protein_coding	Intergenic	.	.	Alu	0.125
7	75104381	A->G	+	ENSG00000174428	GTF2IRD2B	protein_coding	Intergenic	.	.	Alu	0.166667
17	75323980	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
17	75324019	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
17	75324610	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.153846
17	75324615	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.133333
17	75324954	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.333333
17	75346249	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.117647
17	75346322	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.333333
17	75346331	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.235294
17	75346396	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.173913
17	75346413	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.290323
17	75346414	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.107143
17	75346420	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
17	75346720	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.105263
17	75346764	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.117647
17	75355904	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.176471
17	75355907	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.555556
17	75355914	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.105263
17	75355954	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.176471
17	75355969	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.5
17	75355982	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.357143
17	75400447	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.2
10	75440916	A->G	+	ENSG00000148655	LRMDA	protein_coding	Intergenic	.	.	Alu	0.181818
16	75651439	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.111111
16	75651455	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0606061
16	75651473	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.25
16	75651523	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0740741
16	75651536	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.107143
16	75651568	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.25
16	75651569	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0769231
16	75651610	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.352941
17	75687495	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.272727
17	75687541	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.363636
17	75696429	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.166667
17	75696465	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.363636
17	75805318	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.166667
17	75806348	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.2
17	75806365	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.25
17	75806420	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.272727
17	76055945	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.25
17	76055951	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.15
17	76055976	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.117647
17	76055977	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.117647
17	76056055	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.692308
17	76056059	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.272727
17	76056068	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.181818
17	76056071	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.4
4	76130118	A->G	-	ENSG00000138750	NUP54	protein_coding	Intergenic	.	.	Alu	0.2
4	76130145	A->G	-	ENSG00000138750	NUP54	protein_coding	Intergenic	.	.	Alu	0.125
4	76130201	A->G	-	ENSG00000138750	NUP54	protein_coding	Intergenic	.	.	Alu	0.2
7	76337627	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.0740741
7	76337673	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.185185
7	76337708	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.117647
7	76345324	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.5
7	76348412	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.153846
7	76348457	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.142857
7	76348542	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.75
7	76348548	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.583333
7	76348676	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.272727
7	76348677	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.2
7	76348722	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.125
12	76483538	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.2
12	76483757	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.25
12	76498796	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.214286
5	76512935	A->G	+	ENSG00000145703	IQGAP2	protein_coding	Intergenic	.	.	Alu	0.25
5	76512948	A->G	+	ENSG00000145703	IQGAP2	protein_coding	Intergenic	.	.	Alu	0.4
12	76526723	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0625
12	76526774	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0833333
12	76526779	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0410959
12	76526788	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0322581
12	76526789	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0491803
12	76766810	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.2
12	76766899	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.166667
12	76766909	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.166667
12	76766939	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.230769
12	76767006	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.166667
12	76824722	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.117647
12	76824763	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.153846
12	76824792	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.111111
12	76824793	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.111111
5	76957904	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.3
5	76957905	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.380952
5	76957920	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.1875
5	76957930	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.352941
5	76957982	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.125
5	76957983	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.125
5	76957997	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.111111
5	76958038	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.25
5	76958052	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.166667
5	76958074	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.461538
5	76958100	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.2
5	76962517	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.166667
4	76974921	A->G	+	ENSG00000138758	11-Sep	protein_coding	Intergenic	.	.	Alu	0.117647
4	77070156	A->G	-	ENSG00000118816	CCNI	protein_coding	Intergenic	.	.	Alu	0.136364
17	77202755	A->G	+	ENSG00000129657	SEC14L1	protein_coding	Intergenic	.	.	Alu	0.2
14	77526906	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.2
14	77528369	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.153846
1	77602717	A->G	-	ENSG00000036549	AC118549.1	protein_coding	Intergenic	.	.	Alu	0.285714
1	77602738	A->G	-	ENSG00000036549	AC118549.1	protein_coding	Intergenic	.	.	Alu	0.1875
1	77602743	A->G	-	ENSG00000036549	AC118549.1	protein_coding	Intergenic	.	.	Alu	0.384615
1	77698192	A->G	-	ENSG00000077254	USP33	protein_coding	Intergenic	.	.	Alu	0.166667
7	77737875	A->G	+	ENSG00000187257	RSBN1L	protein_coding	Intergenic	.	.	Alu	0.142857
11	77761056	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.133333
11	77761898	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.107143
11	77761899	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.321429
11	77761958	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	1
11	77761970	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.157895
11	77761973	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	1
4	77790777	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.357143
4	77790786	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.214286
4	77790787	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.307692
4	77790803	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.153846
4	77790855	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.2
9	77837909	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.5
9	77837960	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.25
9	77838022	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.153846
9	77838063	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.333333
9	77838249	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
9	77838350	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.181818
X	77851170	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.181818
9	77870464	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.3125
9	77870474	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.538462
9	77870532	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.25
9	77870555	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.181818
9	77870560	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.153846
X	77883597	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.117647
X	77883679	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.363636
X	77883723	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.285714
9	77951377	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
17	77970867	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.214286
17	77972312	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.1875
9	77975660	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0769231
9	77975808	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.133333
9	77975817	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
17	77976738	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.230769
17	77976835	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.1875
17	77982645	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.142857
9	77984328	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.176471
9	77984332	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.173913
9	77984357	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.1
9	77984364	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.111111
9	77984365	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.352941
9	77984441	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.26087
9	77985658	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.538462
9	77985672	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.125
9	77985751	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.368421
9	77985766	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.133333
9	77985787	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.461538
17	77986295	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.133333
9	77986584	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0689655
9	77986603	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0540541
9	77986622	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0731707
9	77986670	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0344828
9	77986688	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0491803
9	77986706	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.4
9	77986708	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0704225
9	77986775	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.155556
9	77986776	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0888889
9	78021134	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0444444
5	78249675	A->G	-	ENSG00000132842	AP3B1	protein_coding	Intergenic	.	.	Alu	0.3
5	78249852	A->G	-	ENSG00000132842	AP3B1	protein_coding	Intergenic	.	.	Alu	0.2
11	78342537	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0588235
11	78389417	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	78389435	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	78389439	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.333333
11	78389444	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.363636
11	78389445	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.3
11	78389515	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.266667
11	78396694	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0731707
11	78396695	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.05
11	78405237	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0689655
15	78454964	A->G	+	ENSG00000136381	IREB2	protein_coding	Intergenic	.	.	Alu	0.2
16	78455476	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.533333
16	78455481	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.1875
15	78455483	A->G	+	ENSG00000136381	IREB2	protein_coding	Intergenic	.	.	Alu	0.357143
15	78455497	A->G	+	ENSG00000136381	IREB2	protein_coding	Intergenic	.	.	Alu	0.25
16	78455522	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.384615
16	78457769	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.454545
16	78457818	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	1
16	78457822	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.375
16	78472553	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.266667
16	78472576	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.363636
16	78472599	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.363636
16	78472644	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.166667
16	78472658	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.0952381
16	78472662	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.136364
16	78472666	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.272727
16	78472688	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.1
16	78472729	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.3
16	78546994	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78619308	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.190476
16	78652201	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
16	78667508	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78667603	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.357143
16	78683678	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.105263
16	78712998	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78753593	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
17	78757072	A->G	-	ENSG00000108669	CYTH1	protein_coding	Intergenic	.	.	Alu	0.3
4	78793289	A->G	+	ENSG00000138756	BMP2K	protein_coding	Intergenic	.	.	Alu	0.2
16	78802666	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.416667
16	78802683	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.214286
16	78802687	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.285714
16	78802691	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.230769
16	78802696	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.416667
16	78802715	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
16	78802730	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78802739	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
16	78842265	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.285714
16	78842285	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.285714
16	78879649	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78884151	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.153846
15	78888232	A->G	+	ENSG00000185787	MORF4L1	protein_coding	Intergenic	.	.	Alu	0.3
15	78888310	A->G	+	ENSG00000185787	MORF4L1	protein_coding	Intergenic	.	.	Alu	0.166667
15	78898243	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
15	78898315	A->G	+	.	.	.	Intergenic	.	.	Alu	0.421053
15	78898337	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
15	78898379	A->G	+	.	.	.	Intergenic	.	.	Alu	0.147059
15	78898392	A->G	+	.	.	.	Intergenic	.	.	Alu	0.09375
15	78898489	A->G	+	.	.	.	Intergenic	.	.	Alu	0.148148
15	78899058	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
15	78899260	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
15	78899267	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
15	78899273	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
15	78899285	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
15	78899331	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
15	78899362	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
15	78899416	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
15	78899417	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
15	78899431	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
15	78899500	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
15	78899549	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
17	78987524	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
6	78992242	A->G	-	ENSG00000146247	PHIP	protein_coding	Intergenic	.	.	Alu	0.166667
10	79094767	A->G	+	ENSG00000108175	ZMIZ1	protein_coding	Intergenic	.	.	Alu	0.153846
10	79094859	A->G	+	ENSG00000108175	ZMIZ1	protein_coding	Intergenic	.	.	Alu	0.272727
9	79586295	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.210526
9	79586312	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.157895
9	79598199	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.0666667
12	79601447	A->G	-	ENSG00000177425	PAWR	protein_coding	Intergenic	.	.	Alu	0.181818
12	79846558	A->G	-	ENSG00000058272	PPP1R12A	protein_coding	Intergenic	.	.	Alu	0.133333
4	79933827	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.230769
4	79933831	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.214286
4	79933873	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.565217
4	79933899	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.1
4	79933913	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.117647
4	79933916	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.117647
4	79933917	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.133333
4	79933919	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.235294
4	79933933	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.125
4	79933935	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.133333
4	79933943	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.166667
4	79934010	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.2
4	79934011	A->G	-	ENSG00000163297	ANTXR2	protein_coding	Intergenic	.	.	Alu	0.2
15	80066688	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.1875
15	80066701	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.129032
15	80066737	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.3
15	80066738	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.7
15	80066739	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.15
15	80066776	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.173913
15	80066777	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.272727
15	80066786	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.333333
15	80066812	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.2
15	80066818	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.2
15	80066860	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.37931
15	80092385	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	1
15	80092386	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	1
7	80155845	A->G	+	ENSG00000127955	GNAI1	protein_coding	Intergenic	.	.	Alu	0.133333
7	80155871	A->G	+	ENSG00000127955	GNAI1	protein_coding	Intergenic	.	.	Alu	0.0952381
7	80155877	A->G	+	ENSG00000127955	GNAI1	protein_coding	Intergenic	.	.	Alu	0.117647
7	80155945	A->G	+	ENSG00000127955	GNAI1	protein_coding	Intergenic	.	.	Alu	0.315789
7	80156000	A->G	+	ENSG00000127955	GNAI1	protein_coding	Intergenic	.	.	Alu	0.3
10	80484010	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.1
5	80699372	A->G	+	ENSG00000113318	MSH3	protein_coding	Intergenic	.	.	Alu	0.181818
5	80699464	A->G	+	ENSG00000113318	MSH3	protein_coding	Intergenic	.	.	Alu	0.25
5	81439638	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0952381
5	81439810	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.153846
5	81463443	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.157895
5	81463455	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0322581
5	81463482	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.08125
5	81463483	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0551724
5	81463488	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.037594
5	81463495	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0629371
5	81463508	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.025641
5	81463532	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0425532
5	81463543	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.430556
5	81463551	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0211268
5	81463552	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.027027
5	81463576	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.666667
5	81463578	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0368098
5	81463591	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.75
5	81463600	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0434783
5	81463613	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.666667
5	81463617	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	1
5	81463618	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.256
5	81463643	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0560748
5	81463659	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.7
5	81463811	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0833333
5	81463866	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0819672
5	81463906	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0847458
5	81463907	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	1
5	81463944	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.111111
5	81463946	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.111111
5	81463951	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.433333
5	81463952	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.290323
5	81463953	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	81463968	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.304348
5	81463996	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.666667
5	81464001	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.486486
5	81464015	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.75
5	81464019	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.5
5	81464020	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.183908
5	81464036	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0754717
5	81464041	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0517241
5	81464042	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0634921
5	81464060	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.084507
5	81464063	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.121622
5	81464064	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0933333
5	81501687	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.2
5	81501695	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.285714
5	81643845	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.103448
5	81712888	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.125
17	81847878	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.166667
17	81856400	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.114286
17	81856435	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.0645161
17	81856755	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.0869565
17	82264861	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.2
17	82264870	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.117647
17	82264883	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.25
17	82264936	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.133333
4	82365883	A->G	-	ENSG00000138668	HNRNPD	protein_coding	Intergenic	.	.	Alu	0.0240964
4	82366669	A->G	-	ENSG00000138668	HNRNPD	protein_coding	Intergenic	.	.	Alu	0.0238095
4	82884083	A->G	-	ENSG00000138674	SEC31A	protein_coding	Intergenic	.	.	Alu	0.333333
4	82884124	A->G	-	ENSG00000138674	SEC31A	protein_coding	Intergenic	.	.	Alu	0.3
4	82884125	A->G	-	ENSG00000138674	SEC31A	protein_coding	Intergenic	.	.	Alu	0.2
15	83052742	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.08
15	83052759	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.148148
15	83052763	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.269231
15	83052769	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.434783
15	83052841	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.166667
15	83052845	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.166667
15	83052882	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.0769231
4	83057775	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.235294
4	83057801	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.103448
4	83057828	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.291667
4	83106164	A->G	-	ENSG00000145287	PLAC8	protein_coding	Intergenic	.	.	Alu	0.272727
11	83184005	A->G	+	ENSG00000254676	AP000873.4	sense_overlapping	Intergenic	.	.	Alu	0.4
15	84685360	A->G	-	ENSG00000140612	SEC11A	protein_coding	Intergenic	.	.	Alu	0.166667
16	84702828	A->G	+	ENSG00000103194	USP10	protein_coding	Intergenic	.	.	Alu	0.25
16	84702831	A->G	+	ENSG00000103194	USP10	protein_coding	Intergenic	.	.	Alu	0.25
16	84702846	A->G	+	ENSG00000103194	USP10	protein_coding	Intergenic	.	.	Alu	0.181818
16	84702851	A->G	+	ENSG00000103194	USP10	protein_coding	Intergenic	.	.	Alu	0.181818
16	84702872	A->G	+	ENSG00000103194	USP10	protein_coding	Intergenic	.	.	Alu	0.142857
15	84796038	A->G	+	ENSG00000166716	ZNF592	protein_coding	Intergenic	.	.	Alu	0.230769
2	84984947	A->G	+	ENSG00000176407	KCMF1	protein_coding	Intergenic	.	.	Alu	0.3
2	84984959	A->G	+	ENSG00000176407	KCMF1	protein_coding	Intergenic	.	.	Alu	0.3
6	85569229	A->G	-	ENSG00000135317	SNX14	protein_coding	Intergenic	.	.	Alu	0.133333
16	85597108	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.181818
16	85597299	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.363636
2	85609845	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.5
2	85609849	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.181818
2	85610080	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.181818
2	85610153	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.133333
2	85610179	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.153846
6	85628152	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.176471
6	85628158	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.277778
6	85633747	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.166667
6	85633760	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.3
6	85633777	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.176471
6	85633800	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.142857
16	85671534	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.6
9	85672859	A->G	-	ENSG00000135049	AGTPBP1	protein_coding	Intergenic	.	.	Alu	0.3
16	85798315	A->G	-	ENSG00000131148	EMC8	protein_coding	Intergenic	.	.	Alu	0.1875
16	85798317	A->G	-	ENSG00000131148	EMC8	protein_coding	Intergenic	.	.	Alu	0.1875
9	85984208	A->G	+	ENSG00000135040	NAA35	protein_coding	Intergenic	.	.	Alu	0.181818
11	86028934	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.105263
11	86028935	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.111111
11	86028936	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.166667
11	86028949	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.105263
11	86028997	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.333333
10	86491268	A->G	-	ENSG00000062650	WAPL	protein_coding	Intergenic	.	.	Alu	0.4375
10	86491345	A->G	-	ENSG00000062650	WAPL	protein_coding	Intergenic	.	.	Alu	0.4
10	86491368	A->G	-	ENSG00000062650	WAPL	protein_coding	Intergenic	.	.	Alu	0.692308
2	86757026	A->G	+	ENSG00000153561	RMND5A	protein_coding	Intergenic	.	.	Alu	0.0526316
2	86766424	A->G	+	ENSG00000153561	RMND5A	protein_coding	Intergenic	.	.	Alu	0.285714
2	86766478	A->G	+	ENSG00000153561	RMND5A	protein_coding	Intergenic	.	.	Alu	0.0909091
2	86766544	A->G	+	ENSG00000153561	RMND5A	protein_coding	Intergenic	.	.	Alu	0.15
1	86869860	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.181818
1	86890805	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.2
1	86898670	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.0454545
1	86898678	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.1875
1	86898687	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.08
1	86898751	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.181818
1	86936886	A->G	+	ENSG00000153936	HS2ST1	protein_coding	Intergenic	.	.	Alu	0.125
1	86954228	A->G	+	ENSG00000153936	HS2ST1	protein_coding	Intergenic	.	.	Alu	0.166667
4	87021948	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.133333
4	87022084	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.214286
4	87022085	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.285714
10	87104293	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.333333
10	87104432	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.0714286
10	87104826	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.2
10	87104844	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.272727
10	87138059	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.181818
6	87187571	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.266667
6	87187630	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.0689655
6	87187635	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.107143
6	87187636	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.190476
6	87195773	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.0869565
6	87195799	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.111111
6	87249787	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.647059
6	87249810	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.333333
6	87249843	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.615385
6	87249849	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.142857
6	87249890	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.727273
6	87249978	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.181818
6	87250188	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.142857
6	87250344	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.454545
6	87250349	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.384615
6	87250364	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.2
6	87250431	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.08
10	87315597	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.111111
6	87378898	A->G	+	ENSG00000111850	SMIM8	protein_coding	Intergenic	.	.	Alu	0.2
9	87501457	A->G	+	ENSG00000196730	DAPK1	protein_coding	Intergenic	.	.	Alu	0.0833333
6	87547764	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.6
6	87547778	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.2
3	87864731	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
3	87864734	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
3	87864735	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	87864816	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
10	87891585	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.142857
10	87891612	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.263158
10	87891613	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.142857
10	87891630	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.166667
10	87891659	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0810811
10	87891726	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0357143
10	87891739	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.08
10	87891740	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.037037
3	87937803	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
10	87947815	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0789474
4	88013529	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.3
4	88013544	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.181818
4	88013617	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.181818
4	88013622	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.217391
4	88016699	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.421053
4	88016751	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	88016770	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.357143
4	88016779	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.117647
4	88016799	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.125
4	88016800	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.133333
4	88016801	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.3125
4	88016802	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.266667
4	88016827	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.111111
4	88016840	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.294118
4	88016886	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.214286
4	88017118	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.2
4	88023147	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.0769231
4	88023149	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.423077
4	88024857	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.08
4	88024858	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.08
4	88024861	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.0869565
3	88088826	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.4
3	88088877	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	88088902	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.166667
3	88088982	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.0625
3	88089020	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.326923
3	88089025	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.226415
3	88089035	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.0555556
4	88602139	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.347826
4	88602199	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.318182
4	88602200	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.0909091
4	88602282	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.0769231
4	88602362	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.388889
4	88602514	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.153846
4	88602536	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.615385
4	88602557	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.142857
4	88602604	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.307692
4	88602619	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.142857
4	88602677	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.545455
4	88602700	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.4
4	88602748	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.666667
2	88608846	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.0666667
2	88608960	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.12
2	88608989	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.181818
2	88622035	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.153846
1	88722676	A->G	+	ENSG00000065243	PKN2	protein_coding	Intergenic	.	.	Alu	0.272727
1	88722680	A->G	+	ENSG00000065243	PKN2	protein_coding	Intergenic	.	.	Alu	0.181818
1	88722698	A->G	+	ENSG00000065243	PKN2	protein_coding	Intergenic	.	.	Alu	0.25
6	88760965	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.727273
1	88855497	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.153846
1	88857820	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.0833333
1	88857928	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.230769
1	88866254	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	1
1	88866272	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	1
1	88866680	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.5
1	88873253	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.133333
1	88873318	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.125
1	88873395	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.272727
1	88874404	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.1
1	88874417	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.075
1	88874551	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.0769231
1	88874561	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.115385
1	88884095	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.142857
6	88902807	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.230769
6	88902811	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.272727
6	88902834	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.416667
6	88902873	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.307692
6	88902874	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.333333
6	88902876	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.357143
6	88902879	A->G	-	ENSG00000111880	RNGTT	protein_coding	Intergenic	.	.	Alu	0.75
15	89094967	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.461538
15	89094979	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.0810811
15	89095013	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.0769231
14	89318341	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.3
14	89392752	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.4
14	89392778	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.307692
14	89392785	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.454545
16	89393409	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.166667
16	89393429	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.133333
16	89393614	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
16	89451469	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
16	89451552	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.117647
16	89451590	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.181818
16	89451592	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.363636
14	89467736	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.8
16	89477424	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.136364
16	89477530	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.636364
16	89477533	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.363636
16	89477534	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.181818
16	89477535	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.3
14	89510831	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.363636
16	89516627	A->G	+	ENSG00000197912	SPG7	protein_coding	Intergenic	.	.	Alu	0.272727
14	89584850	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.0869565
14	89584851	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.0869565
1	89642647	A->G	+	ENSG00000230735	AC093423.2	sense_intronic	Intergenic	.	.	Alu	0.4
1	89642891	A->G	+	ENSG00000230735	AC093423.2	sense_intronic	Intergenic	.	.	Alu	0.3
1	89643293	A->G	+	ENSG00000230735	AC093423.2	sense_intronic	Intergenic	.	.	Alu	0.727273
16	89786116	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.272727
16	89786121	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.142857
16	89786157	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.117647
16	89803719	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.4
16	89803720	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.416667
16	89803737	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.166667
15	89873983	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.285714
15	89874005	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.117647
15	89874019	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.25
16	89876765	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.181818
15	89884724	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.2
16	89886499	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.181818
16	89886615	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.384615
16	89886619	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.384615
16	89886672	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.25
16	89886674	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.181818
16	89886683	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.538462
16	89886857	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.272727
16	89886858	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.826087
16	89887133	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.416667
15	90082826	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
15	90082864	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
15	90082885	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
15	90082890	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
15	90082903	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
15	90082904	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
15	90082928	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
6	90141292	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	90141345	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.0869565
6	90141363	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.137931
6	90141374	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.0869565
6	90141460	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.0666667
6	90167470	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.2
6	90167494	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.222222
6	90167632	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.2
6	90167634	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.4
6	90243012	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.333333
6	90243017	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.5
6	90243018	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.181818
6	90243112	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.2
6	90243125	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.5
6	90247364	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.166667
6	90247428	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.384615
6	90247448	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.733333
6	90247456	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.416667
14	90265568	A->G	+	ENSG00000100764	PSMC1	protein_coding	Intergenic	.	.	Alu	0.125
14	90265609	A->G	+	ENSG00000100764	PSMC1	protein_coding	Intergenic	.	.	Alu	0.142857
7	90612595	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.3125
7	90612596	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.117647
7	90612651	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.2
7	90612652	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.2
7	90612722	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.166667
14	90622267	A->G	-	ENSG00000165914	TTC7B	protein_coding	Intergenic	.	.	Alu	0.272727
7	90626819	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.272727
9	90876193	A->G	+	ENSG00000165025	SYK	protein_coding	Intergenic	.	.	Alu	0.2
1	90928410	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.181818
1	90928455	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.166667
4	90932552	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.181818
4	90932567	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.307692
4	90932574	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.8
14	90957141	A->G	-	ENSG00000100784	RPS6KA5	protein_coding	Intergenic	.	.	Alu	0.153846
14	90957247	A->G	-	ENSG00000100784	RPS6KA5	protein_coding	Intergenic	.	.	Alu	0.181818
15	90985371	A->G	-	ENSG00000198901	PRC1	protein_coding	Intergenic	.	.	Alu	0.142857
14	91056972	A->G	-	ENSG00000100784	RPS6KA5	protein_coding	Intergenic	.	.	Alu	0.153846
9	91292416	A->G	-	ENSG00000148090	AUH	protein_coding	Intergenic	.	.	Alu	0.3
9	91292443	A->G	-	ENSG00000148090	AUH	protein_coding	Intergenic	.	.	Alu	0.3
9	91292452	A->G	-	ENSG00000148090	AUH	protein_coding	Intergenic	.	.	Alu	0.2
14	91460796	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.2
14	91460798	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.235294
14	91460799	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.111111
10	91807740	A->G	+	ENSG00000107854	TNKS2	protein_coding	Intergenic	.	.	Alu	0.166667
10	91807875	A->G	+	ENSG00000107854	TNKS2	protein_coding	Intergenic	.	.	Alu	0.2
10	91807881	A->G	+	ENSG00000107854	TNKS2	protein_coding	Intergenic	.	.	Alu	0.133333
10	91807885	A->G	+	ENSG00000107854	TNKS2	protein_coding	Intergenic	.	.	Alu	0.142857
10	91938741	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.107143
7	91988364	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.133333
10	91998006	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.111111
10	91998061	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.214286
14	92068869	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.272727
14	92069459	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.2
14	92069463	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.133333
14	92069521	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.2
14	92069604	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.307692
14	92069614	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.454545
14	92069647	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.384615
14	92070718	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.2
14	92085263	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.133333
14	92085289	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.136364
14	92085325	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.157895
14	92085432	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.235294
14	92091044	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.272727
7	92091332	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.428571
7	92091333	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.304348
7	92091382	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.1875
7	92091415	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.333333
7	92091421	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.222222
7	92091424	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.111111
7	92091465	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.181818
7	92091466	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.529412
7	92091492	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.354839
7	92091506	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.0714286
7	92091507	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.107143
7	92091518	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.0645161
7	92091527	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.176471
7	92091528	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.272727
14	92091730	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.166667
12	92094065	A->G	-	ENSG00000257242	LINC01619	processed_transcript	Intergenic	.	.	Alu	0.133333
12	92094088	A->G	-	ENSG00000257242	LINC01619	processed_transcript	Intergenic	.	.	Alu	0.294118
7	92103203	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.181818
7	92103471	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.272727
12	92127398	A->G	-	ENSG00000257242	LINC01619	processed_transcript	Intergenic	.	.	Alu	0.117647
12	92127404	A->G	-	ENSG00000257242	LINC01619	processed_transcript	Intergenic	.	.	Alu	0.25
7	92220955	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.333333
7	92220960	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.461538
7	92220961	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.384615
1	92259866	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.5
1	92259872	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.545455
1	92292499	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.454545
1	92292526	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.1875
1	92292549	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.222222
1	92292880	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.2
1	92292899	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.909091
1	92292902	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.2
1	92292940	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.307692
1	92292947	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.538462
1	92292965	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.272727
10	92300346	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.181818
10	92300373	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.166667
10	92313640	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.133333
10	92313925	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.0857143
10	92314816	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.111111
10	92314820	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.111111
10	92314828	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.133333
10	92314849	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.125
10	92322117	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.5
10	92322121	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.272727
10	92322124	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.2
9	92442278	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.2
9	92442283	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.3
9	92442313	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.4
9	92497503	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.4
9	92497504	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.3
9	92525770	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.166667
9	92525842	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.181818
7	92573246	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.222222
7	92573266	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.133333
7	92573388	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.0952381
7	92573427	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.285714
7	92573428	A->G	-	ENSG00000234545	FAM133B	protein_coding	Intergenic	.	.	Alu	0.153846
10	92671150	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
10	92671213	A->G	-	.	.	.	Intergenic	.	.	Alu	0.266667
7	92673942	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.142857
7	92674022	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.130435
7	92711660	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.842105
7	92711675	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.166667
7	92711732	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0444444
7	92711736	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.44898
7	92711737	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.06
7	92711740	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0638298
7	92711761	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0789474
7	92711763	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0526316
7	92711764	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.589744
7	92711766	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.194444
7	92711771	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.242424
7	92711994	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.62963
7	92711999	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.714286
7	92712007	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.230769
7	92712024	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0769231
7	92712030	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.205882
7	92712040	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.121212
7	92712073	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.15625
7	92712097	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.135135
7	92712103	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0909091
7	92871737	A->G	+	ENSG00000237819	AC002454.1	antisense	Intergenic	.	.	Alu	0.230769
15	92889208	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0483871
15	92889234	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	92889276	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0517241
15	92889277	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.152542
15	92889281	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.125
15	92889355	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0428571
15	92889365	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.117647
15	92889396	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0526316
15	92889397	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0425532
15	92889408	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.214286
15	92889425	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0681818
15	92889426	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.136364
15	92909031	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0645161
15	92909040	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.1
7	92931827	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
7	92931870	A->G	+	.	.	.	Intergenic	.	.	Alu	0.857143
7	92931887	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
7	92931888	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
7	92949379	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
1	93086344	A->G	+	ENSG00000143033	MTF2	protein_coding	Intergenic	.	.	Alu	0.272727
1	93174096	A->G	-	ENSG00000117500	TMED5	protein_coding	Intergenic	.	.	Alu	0.0606061
14	93290787	A->G	-	ENSG00000011114	BTBD7	protein_coding	Intergenic	.	.	Alu	0.142857
12	93418269	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.3
12	93421313	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.12
12	93421334	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.08
11	93720253	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.153846
11	93720352	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.3
11	93720353	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.636364
11	93720366	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720670	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.8
11	93720672	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.3
11	93720673	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.2
11	93720714	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.153846
11	93720736	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.428571
11	93748890	A->G	+	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.1875
11	93748891	A->G	+	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.133333
5	93918559	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.125
5	93918598	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.230769
5	93918599	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
5	93918601	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
5	93981232	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.125
5	93981249	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.181818
5	94013315	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.2
5	94013316	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.181818
5	94048325	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.181818
5	94050344	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
5	94050366	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
9	94391108	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.272727
9	94391283	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.2
10	94577671	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.2
10	94577740	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.2
10	94577750	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.2
10	94578153	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.111111
10	94578159	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.125
10	94578179	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.176471
9	94848525	A->G	+	ENSG00000148120	C9orf3	protein_coding	Intergenic	.	.	Alu	0.181818
9	94895293	A->G	+	ENSG00000148120	C9orf3	protein_coding	Intergenic	.	.	Alu	0.2
8	94942175	A->G	-	ENSG00000164938	TP53INP1	protein_coding	Intergenic	.	.	Alu	0.2
12	95053848	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0869565
12	95053888	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.08
12	95057287	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.2
12	95057308	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0740741
12	95057309	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0740741
12	95057312	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0645161
12	95057324	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0833333
12	95057384	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.181818
11	95218850	A->G	-	ENSG00000149212	SESN3	protein_coding	Intergenic	.	.	Alu	0.217391
12	95307606	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
12	95476251	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.176471
12	95476252	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	95476287	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.25
12	95476291	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.117647
12	95476292	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.210526
12	95476409	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.230769
12	95476469	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	95482666	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.181818
12	95482984	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.3
11	95824190	A->G	+	ENSG00000166037	CEP57	protein_coding	Intergenic	.	.	Alu	0.0588235
7	96154394	A->G	-	ENSG00000004864	SLC25A13	protein_coding	Intergenic	.	.	Alu	0.2
7	96154429	A->G	-	ENSG00000004864	SLC25A13	protein_coding	Intergenic	.	.	Alu	0.181818
2	96280678	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.0869565
2	96280687	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.235294
2	96280968	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.153846
12	96355481	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.0833333
12	96355501	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.5
12	96355543	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.333333
12	96355556	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.25
12	96355678	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.142857
12	96355679	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.230769
14	96553563	A->G	+	ENSG00000090060	PAPOLA	protein_coding	Intergenic	.	.	Alu	0.5
14	96553566	A->G	+	ENSG00000090060	PAPOLA	protein_coding	Intergenic	.	.	Alu	0.307692
14	96553642	A->G	+	ENSG00000090060	PAPOLA	protein_coding	Intergenic	.	.	Alu	0.333333
10	96567222	A->G	-	ENSG00000077147	TM9SF3	protein_coding	Intergenic	.	.	Alu	0.117647
5	96676995	A->G	+	ENSG00000153113	CAST	protein_coding	Intergenic	.	.	Alu	0.4
1	96743103	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0869565
1	96745878	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.538462
1	96745879	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.846154
1	96798167	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.105263
1	96798219	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.451613
1	96798220	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.580645
1	96798228	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0740741
1	96798259	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0869565
1	96798263	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.136364
1	96798285	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.25
1	96798286	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.37037
1	96798295	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0833333
1	96798312	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.1875
1	96798318	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.125
1	96798361	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.2
1	96798388	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.166667
10	96888120	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.190476
10	96888258	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.125
5	96942492	A->G	+	ENSG00000113441	LNPEP	protein_coding	Intergenic	.	.	Alu	0.285714
5	96942496	A->G	+	ENSG00000113441	LNPEP	protein_coding	Intergenic	.	.	Alu	0.153846
5	96942543	A->G	+	ENSG00000113441	LNPEP	protein_coding	Intergenic	.	.	Alu	0.166667
5	96942569	A->G	+	ENSG00000113441	LNPEP	protein_coding	Intergenic	.	.	Alu	0.153846
9	96974511	A->G	-	ENSG00000196312	MFSD14C	protein_coding	Intergenic	.	.	Alu	0.117647
10	97376300	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.4
10	97376455	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.125
10	97377008	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.181818
10	97377017	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.25
10	97377018	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.166667
10	97377020	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	0.166667
8	97653040	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0588235
8	97668084	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.181818
8	97668166	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0833333
8	97668250	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.117647
8	97668275	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.166667
8	97676878	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.111111
8	97677238	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0869565
8	97677239	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0909091
8	97677327	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.129032
8	97729744	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
8	97779434	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.166667
8	97779499	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.117647
8	97779866	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.153846
8	97786662	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.6
7	97971469	A->G	-	ENSG00000243554	AC004967.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.117647
7	97971501	A->G	-	ENSG00000243554	AC004967.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.636364
7	97971506	A->G	-	ENSG00000243554	AC004967.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
9	97995832	A->G	+	ENSG00000136938	ANP32B	protein_coding	Intergenic	.	.	Alu	0.3
8	98043329	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.111111
8	98043353	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.125
8	98043405	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.15
8	98043683	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.578947
8	98043686	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.6875
4	98312867	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.214286
4	98312909	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.25
4	98312975	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.266667
12	98526704	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.24
12	98526705	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.0952381
12	98526710	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.176471
12	98526749	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.125
12	98526915	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.125
4	98883598	A->G	-	ENSG00000151247	EIF4E	protein_coding	Intergenic	.	.	Alu	0.4
5	98884275	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	98884279	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.0869565
5	98884771	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.142857
5	98884779	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.190476
5	98884854	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.142857
5	98885018	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.6
5	98885270	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.181818
7	98903942	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.333333
7	98903944	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.25
7	98903945	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.307692
7	98903949	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.307692
7	98903951	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.153846
7	98904010	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.7
5	98918115	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.217391
5	98918186	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.454545
5	98918202	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.136364
5	98918288	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.272727
5	98918293	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.133333
5	98918294	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.133333
7	99017439	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.333333
7	99017769	A->G	-	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.3
7	99077436	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.272727
7	99077461	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.153846
7	99077604	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.5
7	99129483	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.272727
13	99202033	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.166667
13	99290470	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.181818
13	99290471	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	1
13	99318700	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.666667
13	99318706	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.214286
13	99318710	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.857143
13	99330339	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.210526
13	99330352	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.277778
6	99405689	A->G	-	ENSG00000132424	PNISR	protein_coding	Intergenic	.	.	Alu	0.454545
6	99405719	A->G	-	ENSG00000132424	PNISR	protein_coding	Intergenic	.	.	Alu	0.416667
2	99407174	A->G	-	ENSG00000135945	REV1	protein_coding	Intergenic	.	.	Alu	0.454545
2	99407180	A->G	-	ENSG00000135945	REV1	protein_coding	Intergenic	.	.	Alu	0.181818
7	99494873	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.117647
7	99496615	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.111111
6	99529988	A->G	-	ENSG00000228439	TSTD3	protein_coding	Intergenic	.	.	Alu	0.166667
6	99530044	A->G	-	ENSG00000228439	TSTD3	protein_coding	Intergenic	.	.	Alu	0.181818
6	99555530	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.2
6	99555717	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.2
6	99556772	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.117647
6	99556773	A->G	-	ENSG00000112237	CCNC	protein_coding	Intergenic	.	.	Alu	0.117647
2	99618515	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.153846
2	99628550	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.111111
2	99639811	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.181818
15	99670595	A->G	+	ENSG00000068305	MEF2A	protein_coding	Intergenic	.	.	Alu	0.0869565
4	99933502	A->G	-	ENSG00000164031	DNAJB14	protein_coding	Intergenic	.	.	Alu	0.230769
1	99977457	A->G	+	ENSG00000117620	SLC35A3	protein_coding	Intergenic	.	.	Alu	0.181818
2	100014846	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.153846
1	100066868	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.2
1	100067749	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.2
1	100074622	A->G	+	ENSG00000156875	MFSD14A	protein_coding	Intergenic	.	.	Alu	0.153846
12	100091709	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.2
1	100122771	A->G	-	ENSG00000156876	SASS6	protein_coding	Intergenic	.	.	Alu	0.2
12	100135332	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.333333
12	100135340	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.142857
12	100135366	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.375
12	100135407	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.181818
12	100135447	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0833333
12	100135448	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.125
12	100136838	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0909091
12	100136839	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.416667
12	100136909	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.3125
12	100136944	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0512821
12	100136949	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.075
12	100136976	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.1
12	100136986	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0625
12	100136993	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0689655
12	100137012	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0666667
12	100137014	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.333333
12	100137015	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0625
12	100137018	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0833333
12	100137086	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0882353
9	100183670	A->G	+	ENSG00000119509	INVS	protein_coding	Intergenic	.	.	Alu	0.2
10	100241079	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.181818
10	100251608	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.25
10	100251609	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.285714
10	100251633	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.166667
10	100251676	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.153846
10	100251681	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.153846
10	100257428	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.3
10	100257482	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.7
10	100257577	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.461538
10	100265672	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.214286
10	100265685	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.15
10	100265787	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.153846
14	100270568	A->G	+	ENSG00000100811	YY1	protein_coding	Intergenic	.	.	Alu	0.1
14	100270572	A->G	+	ENSG00000100811	YY1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	100283839	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.0526316
1	100283856	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.0857143
7	100284319	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
7	100284351	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
1	100286265	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.222222
1	100286307	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.166667
1	100286333	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.44
3	100288017	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.294118
3	100288138	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.214286
3	100288141	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.133333
3	100288146	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.466667
3	100288160	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.125
14	100301148	A->G	-	ENSG00000197119	SLC25A29	protein_coding	Intergenic	.	.	Alu	0.181818
14	100302117	A->G	-	ENSG00000197119	SLC25A29	protein_coding	Intergenic	.	.	Alu	0.166667
14	100302634	A->G	-	ENSG00000197119	SLC25A29	protein_coding	Intergenic	.	.	Alu	0.4
12	100322907	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.133333
7	100362692	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.166667
7	100362706	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.416667
7	100362711	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.272727
7	100363047	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.24
7	100363065	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.166667
1	100410091	A->G	+	ENSG00000079335	CDC14A	protein_coding	Intergenic	.	.	Alu	0.7
1	100435673	A->G	+	ENSG00000079335	CDC14A	protein_coding	Intergenic	.	.	Alu	0.125
10	100952467	A->G	+	ENSG00000119906	SLF2	protein_coding	Intergenic	.	.	Alu	0.272727
10	100952468	A->G	+	ENSG00000119906	SLF2	protein_coding	Intergenic	.	.	Alu	0.333333
10	100952472	A->G	+	ENSG00000119906	SLF2	protein_coding	Intergenic	.	.	Alu	0.461538
2	101019880	A->G	+	ENSG00000071082	RPL31	protein_coding	Intergenic	.	.	Alu	0.230769
2	101019951	A->G	+	ENSG00000071082	RPL31	protein_coding	Intergenic	.	.	Alu	0.142857
2	101274898	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0952381
2	101274924	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.111111
2	101275053	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0444444
2	101275066	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.04
15	101284563	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.206897
15	101284608	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.5
15	101284631	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.181818
15	101284640	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.2
15	101284641	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.133333
15	101284667	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.153846
2	101288358	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.08
15	101290817	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.0487805
X	101394166	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intergenic	.	.	Alu	0.3
X	101394456	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intergenic	.	.	Alu	0.2
3	101662877	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.2
3	101663078	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.333333
3	101663084	A->G	-	ENSG00000066422	ZBTB11	protein_coding	Intergenic	.	.	Alu	0.142857
12	101708762	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.3
12	101708806	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.3
12	101709118	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.153846
12	101709138	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.7
12	101709238	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.230769
12	101709250	A->G	+	ENSG00000111666	CHPT1	protein_coding	Intergenic	.	.	Alu	0.363636
10	101789756	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.3
10	101790349	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.146341
10	101790362	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0769231
10	101790365	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.73913
10	101790369	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.625
10	101790370	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0909091
10	101790397	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0377358
10	101790405	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0535714
10	101790410	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.285714
10	101790437	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.26087
10	101790440	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0294118
10	101790446	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0298507
10	101790450	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0327869
10	101790470	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.163934
10	101790471	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.280702
10	101790472	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0327869
10	101790480	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.180328
10	101790495	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.206349
10	101790496	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0967742
10	101790508	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.134328
10	101790544	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.377358
10	101790549	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.47619
10	101790550	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.47619
12	101812677	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.4
12	101812942	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.7
12	101817346	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.111111
12	101817379	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.416667
12	101817400	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.133333
12	101817406	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.133333
12	101817428	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.636364
12	101824535	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.285714
12	101824552	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.230769
12	101824564	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
12	101824582	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101824588	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101824595	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101824605	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.1875
12	101824660	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
12	101824661	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.272727
12	101824662	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.181818
12	101824684	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.142857
12	101824718	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.428571
12	101824719	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.357143
12	101824727	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.454545
12	101827040	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.266667
12	101827103	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.277778
12	101827115	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.176471
12	101827328	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.176471
12	101827467	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.111111
7	101833199	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0952381
7	101833307	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.12
7	101833448	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.176471
7	101833461	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0769231
7	101855925	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.2
7	101855930	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.153846
7	101855941	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.166667
7	101856100	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.227273
7	101856105	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.1
7	101856139	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.111111
10	101963737	A->G	-	ENSG00000120029	ARMH3	protein_coding	Intergenic	.	.	Alu	0.545455
10	101963738	A->G	-	ENSG00000120029	ARMH3	protein_coding	Intergenic	.	.	Alu	0.3
14	102179518	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.2
4	102338453	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.125
8	102358873	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.153846
8	102358899	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.185185
8	102358907	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.111111
8	102358971	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.111111
8	102358972	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.210526
7	102399834	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.272727
7	102400148	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.133333
7	102400199	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.315789
11	102425860	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.538462
11	102427582	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.0952381
11	102427604	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.176471
11	102427631	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.166667
11	102427665	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.333333
11	102428502	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.461538
11	102428503	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.307692
11	102428557	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.142857
4	102559832	A->G	+	ENSG00000109320	NFKB1	protein_coding	Intergenic	.	.	Alu	0.357143
14	102669085	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.2
14	102705853	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.727273
14	102705917	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.157895
14	102705939	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.125
14	102705981	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.133333
14	102705991	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.555556
14	102706005	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.352941
4	102758707	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.125
4	102758710	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.117647
4	102759169	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.0952381
4	102759240	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.117647
4	102759259	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.0869565
4	102790761	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
4	102814413	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0655738
4	102873372	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.166667
4	102873973	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.153846
4	102873975	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.153846
4	102873997	A->G	+	ENSG00000145354	CISD2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103108964	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.25
10	103108996	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.357143
10	103108997	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.214286
10	103109043	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.3
10	103109120	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.230769
10	103109123	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103109140	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103116659	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.428571
10	103116667	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.238095
10	103116793	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.346154
10	103116808	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.192308
10	103116812	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0740741
10	103118433	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103118485	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.230769
10	103118489	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103118494	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.230769
10	103118521	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.333333
10	103118553	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.3125
10	103118581	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.1875
10	103118618	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
5	103143246	A->G	+	ENSG00000145725	PPIP5K2	protein_coding	Intergenic	.	.	Alu	0.2
5	103143291	A->G	+	ENSG00000145725	PPIP5K2	protein_coding	Intergenic	.	.	Alu	0.181818
5	103143333	A->G	+	ENSG00000145725	PPIP5K2	protein_coding	Intergenic	.	.	Alu	0.3
10	103143461	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.129032
10	103143528	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.325581
10	103143533	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.666667
10	103143534	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.560976
10	103143542	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103143581	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.125
10	103143593	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103143753	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.111111
10	103143868	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.36
10	103143872	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.230769
10	103143873	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0740741
10	103143924	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.166667
10	103143949	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103165809	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.2
10	103165836	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.272727
10	103165961	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.214286
10	103166755	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0666667
10	103166852	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.115385
10	103166911	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0714286
10	103166926	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.15
10	103167153	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.139535
10	103167196	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0612245
10	103167290	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0714286
10	103170655	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.166667
10	103170728	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.285714
10	103170730	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103170731	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.2
10	103178436	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.2
10	103178437	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.266667
10	103178445	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103178521	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.111111
10	103178522	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.111111
10	103178598	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.272727
10	103179054	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.2
10	103179057	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103179104	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.111111
10	103179113	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0645161
10	103179122	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0606061
10	103179156	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.263158
10	103179162	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0689655
10	103179189	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.151515
10	103179197	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0625
10	103179198	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0606061
10	103179203	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0571429
10	103179219	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0857143
10	103179226	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.235294
10	103189754	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103189801	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0833333
10	103189813	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.105263
10	103189838	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.117647
10	103190133	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.117647
10	103190152	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.133333
14	103399619	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.333333
14	103424440	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.166667
14	103494401	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.2
14	103494459	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.153846
14	103682133	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.727273
14	103682183	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.117647
14	103682191	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.1875
14	103682192	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.3125
14	103682193	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	1
14	103682223	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.222222
14	103682249	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.68
14	103682255	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.583333
14	103682325	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.214286
14	103682633	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.3125
12	103936500	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.181818
12	103936540	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.333333
12	104460402	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.097561
12	104460457	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0731707
12	104461893	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0540541
12	104461969	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0294118
12	104461978	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0547945
12	104462020	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0319149
12	104462047	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.024
12	104462082	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0465116
12	104462117	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0265487
12	104462119	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.025641
12	104480322	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.2
12	104480411	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0952381
12	104546393	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.111111
12	104556874	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.4
12	104556920	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.272727
12	104559623	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.3
12	104575113	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0740741
12	104575118	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0869565
12	104589329	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.166667
12	104589351	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.166667
12	104637048	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0645161
12	104686031	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.3
12	104686104	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.125
12	104686106	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.294118
12	104696382	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.130435
12	104696435	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.105263
12	104696436	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.1
12	104696568	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0487805
12	104696607	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0606061
7	105007000	A->G	-	ENSG00000228393	LINC01004	antisense	Intergenic	.	.	Alu	0.153846
7	105007001	A->G	-	ENSG00000228393	LINC01004	antisense	Intergenic	.	.	Alu	0.230769
7	105023249	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.107143
7	105023250	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0714286
7	105023255	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.321429
7	105023282	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.172414
7	105031171	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.117647
7	105031227	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.2
7	105031815	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.181818
7	105031919	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.103448
7	105031920	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0714286
7	105031923	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0666667
7	105031947	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.307692
7	105031961	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0869565
7	105032005	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0769231
7	105032323	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.210526
7	105032341	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.238095
7	105032619	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.166667
7	105049772	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.181818
7	105066936	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.142857
7	105073276	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0606061
7	105073341	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0571429
7	105273554	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.2
7	105273563	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.363636
7	105340486	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.181818
7	105340489	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.2
7	105350192	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.166667
9	105711320	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.384615
9	105711355	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.142857
9	105711574	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.3
9	105711582	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.166667
9	105711649	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.153846
9	105711673	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.25
9	105711705	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.2
9	105711716	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.3
9	105711723	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.3
2	106177347	A->G	-	ENSG00000115652	UXS1	protein_coding	Intergenic	.	.	Alu	0.166667
7	107171780	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.181818
7	107171792	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.133333
7	107171812	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.166667
7	107171815	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.4
7	107395628	A->G	-	ENSG00000164597	COG5	protein_coding	Intergenic	.	.	Alu	0.166667
3	107544906	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.125
6	107923665	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.2
6	107923677	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.2
6	107937260	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0714286
6	107938340	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.125
6	107938374	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0714286
6	107938444	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0882353
6	107938472	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.08
6	107938639	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.117647
6	107938689	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.107143
6	107938694	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.25
6	107938760	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0571429
6	107938784	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.125
6	107938805	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0625
6	107938806	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.0571429
6	107939086	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.272727
11	108017200	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.294118
11	108017202	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.3125
11	108017226	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.117647
11	108017239	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.153846
11	108017315	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.133333
11	108100422	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.5
11	108108263	A->G	+	ENSG00000255467	AP002433.1	antisense	Intergenic	.	.	Alu	0.25
11	108108266	A->G	+	ENSG00000255467	AP002433.1	antisense	Intergenic	.	.	Alu	0.181818
8	108218855	A->G	-	ENSG00000104408	EIF3E	protein_coding	Intergenic	.	.	Alu	0.153846
6	108221684	A->G	-	ENSG00000112335	SNX3	protein_coding	Intergenic	.	.	Alu	0.272727
6	108244778	A->G	-	ENSG00000112335	SNX3	protein_coding	Intergenic	.	.	Alu	0.153846
7	108505501	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.5
7	108505566	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.2
7	108505582	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.277778
7	108505633	A->G	-	ENSG00000135241	PNPLA8	protein_coding	Intergenic	.	.	Alu	0.133333
2	108563995	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.166667
2	108586071	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.4
2	108586077	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.2
2	108586081	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.2
6	108600336	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.181818
6	108600359	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.47619
6	108600360	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.333333
6	108600426	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.0689655
6	108600427	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.566667
6	108600468	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.111111
6	108600497	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.454545
12	108651903	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.2
12	108651925	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.111111
12	108651938	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.25
12	108651939	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.52381
1	108936334	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.181818
1	108942984	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.4
9	109058139	A->G	-	ENSG00000106771	TMEM245	protein_coding	Intergenic	.	.	Alu	0.166667
1	109405621	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.307692
1	109405649	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.166667
1	109405695	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.2
4	109484705	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.133333
4	109500282	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.166667
4	109500469	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.16
4	109500700	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.294118
4	109500758	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.272727
4	109528237	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.153846
4	109528351	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.181818
4	109567002	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.181818
4	109567064	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.105263
4	109573394	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.5
4	109573395	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.7
4	109573416	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.266667
5	109799634	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.2
5	109799643	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.166667
5	109799711	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.153846
5	109799729	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.153846
5	109799742	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.153846
5	109800027	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.235294
5	109800037	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.181818
12	109976042	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.121212
12	109976043	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0967742
12	109976059	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.12
12	109976063	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0869565
12	109976681	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0740741
12	109977290	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0769231
12	109978220	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.0526316
12	109978265	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.117647
12	109978355	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.230769
12	110311988	A->G	+	ENSG00000174437	ATP2A2	protein_coding	Intergenic	.	.	Alu	0.2
1	110352527	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.56
1	110352531	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.08
1	110352533	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.192308
1	110352549	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.0909091
1	110352550	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.192308
1	110352572	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.0857143
1	110352593	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.12
1	110352596	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.12
1	110352597	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.48
1	110352604	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.111111
1	110352621	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.125
1	110352624	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.625
1	110352640	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.230769
1	110353218	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.125
1	110353267	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.153846
1	110353283	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.2
1	110362436	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.2
1	110379912	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.2
12	110447690	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.35
12	110447985	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.166667
12	110448057	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.2
12	110448139	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.190476
12	110497309	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.2
12	110497355	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.25
10	110879528	A->G	+	ENSG00000150593	PDCD4	protein_coding	Intergenic	.	.	Alu	0.0714286
13	110897198	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.101695
13	110897279	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0425532
13	110897356	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0526316
13	110897361	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0588235
13	110897383	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.381818
6	110897962	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
6	110898061	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
1	110898190	A->G	+	ENSG00000143119	CD53	protein_coding	Intergenic	.	.	Alu	0.1875
1	110898230	A->G	+	ENSG00000143119	CD53	protein_coding	Intergenic	.	.	Alu	0.0967742
13	110898642	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.025641
13	110898648	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0909091
13	110898665	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0333333
13	110898697	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0687023
13	110898841	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.04
13	110898861	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.1
13	110898870	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.116279
13	110898893	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0508475
13	110898930	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.135135
13	110899024	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.3125
13	110899029	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.34375
13	110899967	A->G	-	ENSG00000088448	ANKRD10	protein_coding	Intergenic	.	.	Alu	0.25
13	110899994	A->G	-	ENSG00000088448	ANKRD10	protein_coding	Intergenic	.	.	Alu	0.6
13	110900009	A->G	-	ENSG00000088448	ANKRD10	protein_coding	Intergenic	.	.	Alu	0.545455
13	110900040	A->G	-	ENSG00000088448	ANKRD10	protein_coding	Intergenic	.	.	Alu	0.692308
13	110900042	A->G	-	ENSG00000088448	ANKRD10	protein_coding	Intergenic	.	.	Alu	0.272727
13	110900044	A->G	-	ENSG00000088448	ANKRD10	protein_coding	Intergenic	.	.	Alu	0.25
1	110900461	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0512821
1	110900499	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0487805
1	110900502	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0487805
1	110900576	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0454545
1	110910366	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
1	110910507	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
1	110910553	A->G	+	.	.	.	Intergenic	.	.	Alu	0.103448
10	110924911	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.133333
13	111207281	A->G	+	ENSG00000102606	ARHGEF7	protein_coding	Intergenic	.	.	Alu	0.3
7	111214405	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.272727
7	111214468	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.230769
7	111214480	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.583333
7	111214481	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.153846
7	111214556	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.166667
7	111214625	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.307692
7	111214632	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.5
7	111214648	A->G	-	ENSG00000184903	IMMP2L	protein_coding	Intergenic	.	.	Alu	0.272727
9	111480395	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.125
9	111480422	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.2
9	111480557	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.416667
6	111489456	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.125
1	111653573	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.142857
12	111671865	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.4
12	111671879	A->G	-	ENSG00000089234	BRAP	protein_coding	Intergenic	.	.	Alu	0.3
12	112221678	A->G	-	ENSG00000173064	HECTD4	protein_coding	Intergenic	.	.	Alu	0.2
12	112221687	A->G	-	ENSG00000173064	HECTD4	protein_coding	Intergenic	.	.	Alu	0.454545
11	112239046	A->G	+	ENSG00000150787	PTS	protein_coding	Intergenic	.	.	Alu	0.142857
11	112239054	A->G	+	ENSG00000150787	PTS	protein_coding	Intergenic	.	.	Alu	0.142857
11	112239064	A->G	+	ENSG00000150787	PTS	protein_coding	Intergenic	.	.	Alu	1
11	112239070	A->G	+	ENSG00000150787	PTS	protein_coding	Intergenic	.	.	Alu	0.125
11	112239078	A->G	+	ENSG00000150787	PTS	protein_coding	Intergenic	.	.	Alu	0.533333
9	112287400	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.117647
9	112287423	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.153846
9	112287509	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.125
9	112287516	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.125
9	112329974	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.133333
9	112329978	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.2
12	112432747	A->G	+	ENSG00000179295	PTPN11	protein_coding	Intergenic	.	.	Alu	0.416667
12	112434497	A->G	+	ENSG00000179295	PTPN11	protein_coding	Intergenic	.	.	Alu	0.2
3	112565705	A->G	+	ENSG00000138459	SLC35A5	protein_coding	Intergenic	.	.	Alu	0.25
3	112565714	A->G	+	ENSG00000138459	SLC35A5	protein_coding	Intergenic	.	.	Alu	0.166667
1	112623534	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.153846
1	112623544	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.25
1	112623818	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.111111
1	112623859	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.5
1	112623885	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.130435
1	112663571	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.238095
1	112663631	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.608696
1	112663641	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.190476
1	112663779	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.416667
1	112663970	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.481481
1	112664002	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0606061
1	112664017	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	112664023	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.684211
1	112664048	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.166667
1	112664050	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.809524
1	112664056	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.157895
1	112664061	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	112664111	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.24
1	112664121	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	112664152	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.263158
1	112664157	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.1875
7	112787818	A->G	-	ENSG00000146802	TMEM168	protein_coding	Intergenic	.	.	Alu	0.3
10	112846578	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
10	112846579	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
10	112979638	A->G	+	ENSG00000148737	TCF7L2	protein_coding	Intergenic	.	.	Alu	0.166667
13	113222651	A->G	+	ENSG00000139842	CUL4A	protein_coding	Intergenic	.	.	Alu	0.363636
3	113666102	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.384615
3	113666532	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.153846
3	113666626	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.142857
3	113666644	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.105263
3	113666664	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.166667
3	113666793	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.166667
3	113672249	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.181818
3	113729059	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.111111
3	113729082	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.0857143
3	113729110	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.171429
3	113729159	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.111111
3	113729616	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.1875
3	113729671	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.3
3	113729752	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.1
3	113729771	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.333333
3	113729804	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.304348
3	113729822	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.153846
3	113729830	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.185185
1	113732989	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.2
2	113753244	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.125
2	113753276	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0833333
2	113753307	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.166667
2	113753311	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0967742
2	113753343	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0540541
2	113753349	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0769231
2	113753354	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.128205
2	113753355	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.25641
2	113753371	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0540541
2	113753390	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0740741
2	113753393	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.269231
2	113753414	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.09375
2	113753419	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.166667
2	113753443	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.6
2	113753466	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.35
3	113754480	A->G	+	ENSG00000114573	ATP6V1A	protein_coding	Intergenic	.	.	Alu	0.272727
2	113936171	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0666667
2	113949114	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0625
2	113949116	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0645161
2	113949120	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0625
2	113949122	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.117647
2	113949123	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.222222
2	113949131	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0645161
2	113949227	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0638298
2	113949231	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0434783
2	113949257	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0444444
2	113949655	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.133333
3	114061813	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.272727
3	114061852	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.2
3	114062262	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.642857
3	114062308	A->G	+	ENSG00000151576	QTRT2	protein_coding	Intergenic	.	.	Alu	0.636364
13	114258842	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.176471
13	114258843	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.235294
13	114258867	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.666667
13	114258873	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.117647
13	114258927	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.117647
13	114258951	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.666667
13	114258955	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.545455
13	114258978	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.416667
13	114259074	A->G	+	ENSG00000130177	CDC16	protein_coding	Intergenic	.	.	Alu	0.357143
13	114284241	A->G	+	ENSG00000169062	UPF3A	protein_coding	Intergenic	.	.	Alu	0.166667
13	114284283	A->G	+	ENSG00000169062	UPF3A	protein_coding	Intergenic	.	.	Alu	0.181818
3	114346793	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.2
3	114346826	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.25
3	114346881	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.166667
3	114346882	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.272727
3	114346889	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.142857
3	114346904	A->G	-	ENSG00000181722	ZBTB20	protein_coding	Intergenic	.	.	Alu	0.214286
8	115500208	A->G	-	ENSG00000104447	TRPS1	protein_coding	Intergenic	.	.	Alu	0.142857
8	115500212	A->G	-	ENSG00000104447	TRPS1	protein_coding	Intergenic	.	.	Alu	0.142857
8	115500233	A->G	-	ENSG00000104447	TRPS1	protein_coding	Intergenic	.	.	Alu	0.1875
X	115956731	A->G	-	ENSG00000235244	DANT2	lincRNA	Intergenic	.	.	Alu	0.214286
12	116104113	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.285714
12	116104203	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.142857
12	116136157	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.181818
12	116146325	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.277778
12	116146392	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0952381
12	116165420	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0465116
12	116165427	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.725
12	116165428	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.405405
12	116165436	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.217391
12	116165471	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.245283
12	116165531	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.169811
12	116165551	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.106383
12	116165558	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.191489
12	116206178	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0588235
12	116206189	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0526316
12	116206219	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0425532
12	116253865	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.111111
12	116253897	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.101695
12	116253898	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0338983
12	116253924	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.295082
12	116253928	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0422535
12	116253929	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0958904
12	116253931	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0789474
12	116253954	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0877193
12	116253955	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0677966
12	116253956	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0333333
12	116253988	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0571429
12	116254674	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.2
12	116254680	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.2
12	116254718	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.3125
11	116884402	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	116884408	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	116884431	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	116884443	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.642857
7	116894287	A->G	+	ENSG00000198898	CAPZA2	protein_coding	Intergenic	.	.	Alu	0.2
11	116923081	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.357143
11	116923093	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	116923098	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.3
11	116923119	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.125
11	116923148	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	116923205	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	116948108	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117013246	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117014072	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0869565
11	117014077	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.318182
11	117014082	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	117014117	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.133333
11	117063706	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.666667
11	117063707	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	117063729	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	117063763	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.285714
11	117063764	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.133333
11	117063838	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.266667
11	117065911	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.157895
11	117066130	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0697674
11	117066206	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.190476
11	117066301	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	117066305	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	117070351	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.04
11	117070356	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.118644
11	117070368	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0555556
11	117070369	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	117070404	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.180328
11	117070405	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.306452
11	117070413	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.255319
11	117070414	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0638298
11	117070415	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.869565
11	117070543	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0645161
11	117070568	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.235294
11	117070578	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.4
11	117070702	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0689655
11	117070813	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.047619
11	117070878	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0555556
11	117070890	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.108696
11	117070917	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0666667
11	117070922	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0689655
11	117070957	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	117071688	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0869565
11	117071775	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	117071891	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117075680	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0588235
11	117075945	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117075986	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	117076013	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0606061
11	117076017	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0606061
11	117076052	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.140351
11	117076128	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.108108
11	117085183	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117085185	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.307692
11	117085264	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1875
11	117177043	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
12	117182243	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.230769
12	117182276	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.615385
12	117182322	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.428571
12	117182390	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.181818
12	117182443	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.153846
12	117182453	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.454545
12	117182456	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.272727
12	117182483	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.294118
12	117182528	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.181818
12	117182636	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.3
12	117182700	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.125
12	118193105	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1
12	118194814	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118194847	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	118194877	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1875
12	118194919	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118219822	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118228241	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	118229010	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1
12	118229211	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118229238	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118229241	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.25
12	118229303	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1875
12	118229304	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.2
12	118230607	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.692308
12	118306424	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.285714
12	118309605	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118309654	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.214286
12	118310029	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.153846
12	118310032	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118310053	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	118310057	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.125
12	118310058	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	118310176	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	118310189	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	118322905	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.105263
12	118322906	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.105263
12	118339350	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.04
12	118339663	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.153846
12	118348723	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0666667
12	118349016	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0408163
12	118349062	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0606061
12	118349070	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0740741
12	118351909	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.26087
12	118351937	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0377358
12	118351941	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0925926
12	118351985	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0545455
12	118352012	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0294118
12	118352038	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.4
12	118352046	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0847458
12	118352047	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0338983
12	118352052	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0338983
12	118352053	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0344828
12	118352056	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.102041
12	118352077	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.05
12	118352287	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.444444
12	118352321	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.153846
12	118352341	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118356421	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.264706
12	118356422	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.117647
12	118356432	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.515152
12	118356437	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.333333
12	118356438	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0882353
12	118356445	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1
12	118356464	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0425532
12	118356503	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0428571
12	118356527	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0697674
12	118356549	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0512821
12	118356798	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.7
12	118356800	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.583333
12	118356805	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.4
12	118356839	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0869565
12	118356840	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.333333
12	118356900	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.333333
12	118356922	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.130435
12	118361525	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	118446229	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.266667
X	118692304	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	118692460	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
X	118692512	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
X	118692513	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
X	118692516	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
X	118692519	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
X	118692708	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	118692710	A->G	+	.	.	.	Intergenic	.	.	Alu	0.545455
X	118692744	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	118692750	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
X	118692776	A->G	+	.	.	.	Intergenic	.	.	Alu	0.428571
X	118692782	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
X	118692786	A->G	+	.	.	.	Intergenic	.	.	Alu	0.428571
4	118695850	A->G	+	ENSG00000145388	METTL14	protein_coding	Intergenic	.	.	Alu	0.181818
4	118695989	A->G	+	ENSG00000145388	METTL14	protein_coding	Intergenic	.	.	Alu	0.0740741
4	118696018	A->G	+	ENSG00000145388	METTL14	protein_coding	Intergenic	.	.	Alu	0.0740741
11	118769959	A->G	-	ENSG00000110367	DDX6	protein_coding	Intergenic	.	.	Alu	0.2
11	118774640	A->G	-	ENSG00000110367	DDX6	protein_coding	Intergenic	.	.	Alu	0.166667
11	118774641	A->G	-	ENSG00000110367	DDX6	protein_coding	Intergenic	.	.	Alu	0.230769
11	119001969	A->G	+	ENSG00000186166	CCDC84	protein_coding	Intergenic	.	.	Alu	0.230769
11	119001974	A->G	+	ENSG00000186166	CCDC84	protein_coding	Intergenic	.	.	Alu	0.181818
11	119002014	A->G	+	ENSG00000186166	CCDC84	protein_coding	Intergenic	.	.	Alu	0.363636
10	119062813	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.111111
10	119062859	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.16129
10	119062876	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.142857
10	119062949	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.16
11	119075851	A->G	+	ENSG00000160695	VPS11	protein_coding	Intergenic	.	.	Alu	0.272727
5	119324216	A->G	+	ENSG00000145779	TNFAIP8	protein_coding	Intergenic	.	.	Alu	0.2
3	119447710	A->G	-	ENSG00000176142	TMEM39A	protein_coding	Intergenic	.	.	Alu	0.142857
3	119447749	A->G	-	ENSG00000176142	TMEM39A	protein_coding	Intergenic	.	.	Alu	0.133333
3	119447753	A->G	-	ENSG00000176142	TMEM39A	protein_coding	Intergenic	.	.	Alu	0.133333
10	119588373	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.0588235
10	119588416	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.0408163
10	119588426	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.0909091
10	119588441	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.0681818
10	119588523	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.0833333
10	119588526	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.181818
10	119588617	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.153846
10	119588625	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.125
X	119624412	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.272727
X	119684563	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.117647
X	119687389	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.25
X	119687430	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.117647
X	119687433	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.125
8	119805997	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.307692
8	119806084	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.692308
8	119806702	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.0869565
X	119844278	A->G	-	ENSG00000125351	UPF3B	protein_coding	Intergenic	.	.	Alu	0.142857
X	119926335	A->G	-	ENSG00000101882	NKAP	protein_coding	Intergenic	.	.	Alu	0.272727
3	120078730	A->G	-	ENSG00000082701	GSK3B	protein_coding	Intergenic	.	.	Alu	0.117647
12	120112264	A->G	-	ENSG00000111737	RAB35	protein_coding	Intergenic	.	.	Alu	0.333333
12	120112821	A->G	-	ENSG00000111737	RAB35	protein_coding	Intergenic	.	.	Alu	0.25
12	120544400	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.25
12	120544455	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.153846
12	120544480	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.2
12	120544550	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.230769
12	120556334	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.133333
12	120556404	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0740741
12	120556410	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.192308
12	120556903	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.08
12	120556950	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.105263
12	120556969	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.272727
12	120556997	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0625
12	120557013	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.142857
12	120557023	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0731707
12	120557033	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0555556
12	120567545	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.111111
12	120567580	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.105263
12	120568124	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.307692
9	120775184	A->G	-	ENSG00000119402	FBXW2	protein_coding	Intergenic	.	.	Alu	0.4
12	120781724	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.2
12	120781822	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.181818
12	120781825	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.2
12	120808197	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.3
12	120808256	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.166667
12	120808257	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.181818
12	120808292	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.181818
9	120823632	A->G	-	ENSG00000095261	PSMD5	protein_coding	Intergenic	.	.	Alu	0.181818
9	120834091	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.0833333
9	120834112	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.0952381
9	120834118	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.111111
9	120834181	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.3
9	120840282	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.181818
9	120840584	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.166667
9	120840597	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.4
9	120849278	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	1
9	120849293	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.166667
12	120863734	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.411765
12	120863770	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.0740741
12	120863964	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.266667
12	120868529	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.181818
12	120868708	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.615385
12	120868752	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.153846
12	120868753	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.153846
9	121082823	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.15
9	121104949	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.181818
12	121321443	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.454545
12	121321493	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.125
12	121321702	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.125
12	121321705	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.142857
12	121321715	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.133333
12	121321720	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.153846
12	121335238	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.266667
12	121335262	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.666667
12	121335263	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.333333
12	121335281	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.153846
12	121335304	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.133333
12	121335333	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.181818
12	121335384	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.272727
3	121831311	A->G	-	ENSG00000173226	IQCB1	protein_coding	Intergenic	.	.	Alu	0.25
3	121832464	A->G	-	ENSG00000173226	IQCB1	protein_coding	Intergenic	.	.	Alu	0.181818
3	121832465	A->G	-	ENSG00000173226	IQCB1	protein_coding	Intergenic	.	.	Alu	0.181818
3	121832599	A->G	-	ENSG00000173226	IQCB1	protein_coding	Intergenic	.	.	Alu	0.166667
10	121957639	A->G	-	ENSG00000107672	NSMCE4A	protein_coding	Intergenic	.	.	Alu	0.2
7	122074911	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
12	122108108	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.2
12	122108115	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.1
12	122108159	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.133333
12	122412134	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.142857
12	122412141	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.15
12	122412142	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.75
12	122412161	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.263158
12	122412166	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.133333
12	122412235	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.214286
12	122412243	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.416667
12	122412246	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.545455
12	122412617	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.3
12	122627929	A->G	+	.	.	.	Intergenic	.	.	Alu	0.7
11	122705218	A->G	+	ENSG00000154127	UBASH3B	protein_coding	Intergenic	.	.	Alu	0.166667
11	122705240	A->G	+	ENSG00000154127	UBASH3B	protein_coding	Intergenic	.	.	Alu	0.2
9	122817659	A->G	-	ENSG00000136940	PDCL	protein_coding	Intergenic	.	.	Alu	0.2
9	122817679	A->G	-	ENSG00000136940	PDCL	protein_coding	Intergenic	.	.	Alu	0.6
12	122869883	A->G	-	ENSG00000139722	VPS37B	protein_coding	Intergenic	.	.	Alu	0.2
9	122901689	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.111111
9	122901756	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.25
9	122901759	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0833333
9	122901785	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.137931
9	122901792	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0714286
9	122901831	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.166667
9	122902094	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.153846
9	122924829	A->G	-	ENSG00000171448	ZBTB26	protein_coding	Intergenic	.	.	Alu	0.2
10	123001072	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.32
10	123001082	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.125
10	123001138	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.0645161
10	123001144	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.285714
10	123001150	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.125
10	123001175	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.0909091
8	123032237	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.125
8	123032924	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.44
8	123032940	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.08
8	123032942	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.615385
8	123032961	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0769231
8	123032983	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.142857
8	123033000	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.5
8	123033008	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0967742
8	123033022	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0714286
8	123033025	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.454545
8	123033095	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.0625
8	123033138	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.266667
12	123158122	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.333333
12	123158127	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.461538
12	123158128	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.153846
12	123158157	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.214286
12	123158183	A->G	-	ENSG00000051825	MPHOSPH9	protein_coding	Intergenic	.	.	Alu	0.166667
9	123248364	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.142857
9	123248365	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.153846
9	123248379	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.117647
9	123248389	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.214286
9	123248405	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.3125
9	123248406	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.125
9	123251027	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.153846
9	123256162	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.181818
9	123256217	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.130435
9	123256246	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.181818
8	123321880	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.272727
12	123323418	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.444444
12	123323493	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.130435
12	123323519	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.166667
12	123323531	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.176471
12	123323627	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.181818
8	123325553	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.166667
8	123344484	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0416667
12	123348874	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.25
12	123348877	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.230769
8	123379665	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.153846
8	123379671	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.133333
8	123389104	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.3
8	123389105	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.2
12	123419964	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.2
12	123421940	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.3
12	123421941	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	0.3
12	123755389	A->G	+	ENSG00000185344	ATP6V0A2	protein_coding	Intergenic	.	.	Alu	0.103448
12	123755415	A->G	+	ENSG00000185344	ATP6V0A2	protein_coding	Intergenic	.	.	Alu	0.0571429
X	123972769	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.166667
X	123972809	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.142857
X	123972841	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.357143
X	123972842	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.357143
X	123972843	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.153846
X	123972942	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.333333
X	123972964	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.105263
X	123972999	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.111111
X	123973723	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.166667
8	124356848	A->G	-	ENSG00000164983	TMEM65	protein_coding	Intergenic	.	.	Alu	0.1
8	124357967	A->G	-	ENSG00000164983	TMEM65	protein_coding	Intergenic	.	.	Alu	0.0952381
9	124382014	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0810811
9	124382038	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.194444
9	124382125	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.5
9	124382131	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.833333
9	124382141	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.5
9	124382346	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0566038
9	124382421	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0789474
9	124382424	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.25
9	124382432	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.1
9	124382435	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0512821
9	124382445	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.288889
9	124382480	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.153846
9	124382481	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0769231
9	124382483	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.102564
10	124772566	A->G	-	ENSG00000258539	AC068896.1	protein_coding	Intergenic	.	.	Alu	0.285714
10	124772567	A->G	-	ENSG00000258539	AC068896.1	protein_coding	Intergenic	.	.	Alu	0.266667
10	124776003	A->G	-	ENSG00000258539	AC068896.1	protein_coding	Intergenic	.	.	Alu	0.2
10	124923339	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.4
10	124923408	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.3
10	124923500	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.166667
9	125136213	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.2
9	125138512	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.2
9	125158758	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.2
9	125158759	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.153846
9	125158786	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0909091
9	125158842	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.12
9	125158843	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.12
9	125158844	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.166667
9	125158845	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.173913
9	125159141	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.1
9	125159163	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0909091
9	125159480	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.133333
9	125165921	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0909091
9	125166640	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.1
9	125166806	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.1
9	125179718	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.294118
9	125179721	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.214286
9	125179732	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.307692
9	125179752	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.3
9	125179859	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	1
9	125187122	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.117647
9	125187526	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.3
3	125241358	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.181818
9	125279053	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.3
9	125299872	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.142857
3	125322168	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.133333
9	125335918	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.181818
9	125336548	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.2
9	125336582	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.2
3	125360424	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.166667
3	125360426	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.166667
3	125360485	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.230769
3	125362733	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.214286
3	125362841	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.111111
3	125363788	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.0625
3	125363814	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.5
3	125363857	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.727273
3	125363865	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.1
3	125363891	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.0869565
3	125363895	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.136364
9	125834839	A->G	+	ENSG00000167081	PBX3	protein_coding	Intergenic	.	.	Alu	0.4
9	125834906	A->G	+	ENSG00000167081	PBX3	protein_coding	Intergenic	.	.	Alu	0.2
10	125878847	A->G	-	ENSG00000089876	DHX32	protein_coding	Intergenic	.	.	Alu	0.333333
3	126598166	A->G	-	ENSG00000283374	TXNRD3NB	protein_coding	Intergenic	.	.	Alu	0.272727
2	127334509	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.181818
2	127334584	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.692308
2	127334909	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.5
2	127334935	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.2
2	127349390	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.181818
2	127349416	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.142857
2	127351979	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.2
2	127366947	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.230769
2	127366999	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.0689655
2	127367008	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.25
2	127367009	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.148148
2	127367042	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.125
2	127367044	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.285714
2	127384817	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.117647
2	127754543	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.105263
2	127783665	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.307692
2	127783681	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.111111
2	127783697	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.105263
2	127783742	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.388889
2	127783743	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.117647
2	127783769	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.153846
2	127786238	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.4
2	127786520	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.2
2	127786559	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.153846
2	127786571	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.2
2	127786627	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.230769
9	127790866	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
9	127790891	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
9	127790892	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
9	127791060	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
9	127791836	A->G	+	.	.	.	Intergenic	.	.	Alu	0.30303
9	127791842	A->G	+	.	.	.	Intergenic	.	.	Alu	0.178571
9	127791852	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
9	127791856	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
9	127791859	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
9	127791867	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0645161
9	127791880	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
9	127791881	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0789474
9	127791897	A->G	+	.	.	.	Intergenic	.	.	Alu	0.121951
9	127791902	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
9	127791905	A->G	+	.	.	.	Intergenic	.	.	Alu	0.047619
9	127791926	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0540541
9	127791963	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
9	127791964	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
9	127791997	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
9	127792023	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
9	127792043	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
9	127792057	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16129
9	127792084	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
9	127792085	A->G	+	.	.	.	Intergenic	.	.	Alu	0.190476
9	127792109	A->G	+	.	.	.	Intergenic	.	.	Alu	0.15
9	127792116	A->G	+	.	.	.	Intergenic	.	.	Alu	0.136364
9	127792313	A->G	+	.	.	.	Intergenic	.	.	Alu	0.190476
9	127792321	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
9	127792362	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0625
9	127792393	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16129
9	127792405	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
9	127792406	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0606061
9	127792418	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0625
9	127792421	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
9	127795100	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0869565
9	127795155	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.117647
9	127795180	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0869565
9	127795244	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.105263
9	127795355	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0909091
9	127795473	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.1875
9	127795475	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.157895
9	127795482	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.136364
9	127795556	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.105263
9	127795559	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.111111
9	127795573	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.142857
9	127795615	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	1
2	127796251	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.166667
2	127805216	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0606061
9	127805306	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.366667
2	127805316	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.142857
9	127805324	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.62069
9	127805351	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.09375
9	127805365	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.65625
9	127805375	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0625
9	127805398	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.259259
4	127974875	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.583333
4	128010258	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.384615
4	128010274	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.692308
4	128010275	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.692308
4	128010344	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.461538
4	128010354	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.166667
4	128010476	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.133333
4	128010477	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.133333
4	128010482	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.142857
4	128010484	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.2
4	128010659	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.3125
4	128010665	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	1
4	128010841	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.615385
4	128010843	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.181818
4	128010847	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.636364
4	128010850	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.2
4	128010892	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.3
4	128063306	A->G	+	ENSG00000138709	LARP1B	protein_coding	Intergenic	.	.	Alu	0.117647
4	128063307	A->G	+	ENSG00000138709	LARP1B	protein_coding	Intergenic	.	.	Alu	0.105263
4	128063316	A->G	+	ENSG00000138709	LARP1B	protein_coding	Intergenic	.	.	Alu	0.105263
9	128378430	A->G	+	ENSG00000167118	URM1	protein_coding	Intergenic	.	.	Alu	0.142857
9	128469823	A->G	+	ENSG00000136811	ODF2	protein_coding	Intergenic	.	.	Alu	0.6
7	128550734	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.307692
7	128550740	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
7	128550923	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128550965	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
7	128553311	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.15
7	128553328	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.235294
7	128572391	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.428571
7	128572484	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.133333
7	128572492	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.125
7	128572518	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.318182
7	128572519	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.0833333
7	128572559	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.222222
7	128572560	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.105263
7	128572925	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.357143
7	128572926	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.333333
7	128574439	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	128633664	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
7	128633817	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
7	128633827	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
7	128633844	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
7	128633845	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
3	128732646	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.153846
3	128732647	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.166667
3	128740654	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.4
3	128740694	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.166667
3	128740816	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.222222
7	128749972	A->G	+	ENSG00000128595	CALU	protein_coding	Intergenic	.	.	Alu	0.153846
7	128750107	A->G	+	ENSG00000128595	CALU	protein_coding	Intergenic	.	.	Alu	0.454545
7	128750113	A->G	+	ENSG00000128595	CALU	protein_coding	Intergenic	.	.	Alu	0.272727
9	128769687	A->G	-	ENSG00000160445	ZER1	protein_coding	Intergenic	.	.	Alu	0.153846
7	129227503	A->G	+	ENSG00000158467	AHCYL2	protein_coding	Intergenic	.	.	Alu	0.181818
3	129301147	A->G	+	ENSG00000183624	HMCES	protein_coding	Intergenic	.	.	Alu	0.25
9	129844506	A->G	+	ENSG00000136878	USP20	protein_coding	Intergenic	.	.	Alu	0.142857
7	129894625	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.2
8	129897984	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.235294
8	129897985	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.647059
8	129898036	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.454545
8	129910563	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.2
8	129910746	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.454545
8	129910885	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.272727
9	129913554	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.125
9	129913913	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.2
9	129913948	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.272727
9	129913964	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.266667
9	129914016	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.384615
9	129914020	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.333333
9	129914025	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.1
9	129914026	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.238095
9	129914074	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.263158
9	129914098	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.28
9	129914102	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0952381
9	129914128	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.09375
9	129914249	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.153846
9	129914280	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.307692
9	129914288	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0952381
9	129921462	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.111111
9	129921482	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.136364
9	129921513	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.115385
9	129921514	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.217391
9	129921532	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0714286
9	129921677	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.111111
7	129945949	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.181818
9	129948211	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
9	129948232	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.75
9	129948502	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	129948503	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.454545
9	129948778	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	129950999	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.2
9	129951064	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
8	129974977	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.3
8	130001621	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.222222
8	130001625	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.384615
8	130001640	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0909091
8	130001657	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.464286
8	130001667	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.76
8	130001687	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.1
8	130001691	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0952381
8	130001707	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0869565
8	130001735	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0666667
8	130001744	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0666667
8	130001746	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.310345
8	130001752	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.115385
8	130001753	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0740741
8	130004364	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.235294
8	130004796	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.142857
8	130004852	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0606061
8	130004872	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0625
8	130004895	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0625
8	130004904	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.153846
8	130004905	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.115385
8	130004945	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0714286
9	130018115	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.142857
9	130018148	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	130031733	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.142857
9	130031754	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.153846
9	130031865	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
7	130048247	A->G	-	ENSG00000091732	ZC3HC1	protein_coding	Intergenic	.	.	Alu	0.166667
2	130168850	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.142857
2	130168854	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.153846
2	130168882	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.2
9	130705092	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
9	130705111	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
9	130705115	A->G	+	.	.	.	Intergenic	.	.	Alu	0.545455
9	130705268	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
9	130705284	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
9	130705306	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
3	130871862	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.2
3	130871977	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.3
7	130957856	A->G	-	ENSG00000231721	LINC-PINT	processed_transcript	Intergenic	.	.	Alu	0.181818
3	131008174	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.2
3	131008209	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.333333
3	131008307	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.111111
7	131055090	A->G	-	ENSG00000231721	LINC-PINT	processed_transcript	Intergenic	.	.	Alu	0.363636
7	131071302	A->G	-	ENSG00000231721	LINC-PINT	processed_transcript	Intergenic	.	.	Alu	0.166667
2	131084041	A->G	-	ENSG00000152102	FAM168B	protein_coding	Intergenic	.	.	Alu	0.2
2	131118677	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.0909091
2	131118678	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.1
2	131129231	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.1
2	131129246	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.0833333
2	131129270	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.0869565
2	131129275	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.190476
2	131129605	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.125
9	131192837	A->G	+	ENSG00000126883	NUP214	protein_coding	Intergenic	.	.	Alu	0.181818
5	131276251	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.3
5	131276338	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131276342	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.214286
5	131292033	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0652174
5	131292448	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0571429
5	131292716	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.166667
5	131292717	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.136364
5	131293385	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.1875
5	131293386	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.1875
5	131293452	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0833333
5	131293493	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.115385
5	131294872	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131319874	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0625
5	131319894	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0606061
5	131319898	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0588235
5	131319904	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.30303
5	131319960	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	131319983	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.225806
5	131319986	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0606061
5	131319992	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.222222
5	131320203	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.125
5	131320204	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	131320209	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.08
5	131320566	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.1
5	131320583	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0869565
5	131320595	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.230769
5	131320621	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.111111
5	131320622	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.296296
5	131320657	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.111111
5	131338992	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0465116
5	131339759	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0666667
5	131339770	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0571429
5	131342073	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.3
5	131342130	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.166667
5	131342133	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.363636
5	131367992	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.2
9	131399196	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0666667
9	131399325	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.117647
9	131399363	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.111111
9	131399392	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.125
7	131418289	A->G	+	ENSG00000128585	MKLN1	protein_coding	Intergenic	.	.	Alu	0.1
9	131424445	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131424467	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.142857
9	131424500	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0645161
9	131424501	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.133333
9	131424559	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0833333
9	131424565	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.384615
9	131424566	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.37931
9	131425553	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.125
9	131425617	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.214286
9	131425622	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.1875
9	131425668	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.166667
9	131425889	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.166667
9	131426082	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0833333
9	131426083	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0588235
9	131426100	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0588235
9	131426152	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.163934
9	131426157	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.298246
9	131426160	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0566038
9	131426182	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.075
9	131426185	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.047619
9	131426188	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.047619
9	131426195	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0512821
9	131426211	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.351351
9	131426218	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0465116
9	131426223	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0425532
9	131426231	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.468085
9	131426234	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0425532
9	131426258	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.111111
9	131426288	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.333333
9	131448423	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.833333
9	131448581	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.125
9	131448583	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.368421
7	131479941	A->G	+	ENSG00000128585	MKLN1	protein_coding	Intergenic	.	.	Alu	0.08
2	131505134	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.25
2	131506642	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.2
2	131506655	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.363636
2	131506668	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.5
2	131506716	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.230769
5	131511589	A->G	-	ENSG00000158987	RAPGEF6	protein_coding	Intergenic	.	.	Alu	0.25
5	131647670	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.421053
5	131647708	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.2
5	131699436	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.153846
5	131699490	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.153846
5	131699491	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.384615
5	131764342	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.181818
5	131766165	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.166667
5	131766189	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.266667
5	131775668	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.153846
5	131775765	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.571429
5	131792343	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.105263
10	131902853	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.153846
10	131902865	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.5
10	131902886	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.6875
10	131903004	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.636364
10	131903013	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.444444
10	131903233	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.173913
10	131903234	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.0869565
10	131903311	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	1
10	131903313	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.236842
10	131903320	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.05
10	131903336	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.129032
10	131903373	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.315789
10	131903382	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.447368
10	131903387	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.259259
10	131903388	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.269231
12	132059908	A->G	+	ENSG00000183495	EP400	protein_coding	Intergenic	.	.	Alu	0.2
12	132060693	A->G	+	ENSG00000183495	EP400	protein_coding	Intergenic	.	.	Alu	0.2
9	132291305	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.454545
9	132291331	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.2
9	132339751	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.2
9	132339888	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.214286
12	132652419	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.142857
12	132652424	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.266667
12	132652450	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.15
12	132652454	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.111111
12	132652527	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.214286
12	132654311	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.105263
12	132654345	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.178571
12	132654368	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.291667
12	132656487	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.227273
5	132917845	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.185185
5	132917851	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.153846
5	132917881	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.1
5	132917883	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.214286
5	132917903	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.1
5	132917940	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.333333
5	132917953	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.111111
5	132918136	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.5
5	132918201	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.5
5	132918271	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.142857
5	132918507	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.5
5	132921536	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.176471
5	132921585	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.157895
5	132921605	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.1875
5	132921644	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0952381
5	132921646	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.2
5	132921897	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.173913
5	132926639	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.047619
5	132926669	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0576923
5	132926685	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0967742
5	132926691	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.136364
5	132942899	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.5
5	132951736	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.111111
5	132959947	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0714286
5	132960050	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0952381
5	133078211	A->G	+	ENSG00000170606	HSPA4	protein_coding	Intergenic	.	.	Alu	0.307692
10	133294676	A->G	-	ENSG00000130640	TUBGCP2	protein_coding	Intergenic	.	.	Alu	0.285714
8	133497565	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.214286
8	133497735	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.307692
8	133520824	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.214286
8	133520880	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.166667
8	133521423	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.230769
8	133521569	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.363636
8	133521570	A->G	-	ENSG00000008513	ST3GAL1	protein_coding	Intergenic	.	.	Alu	0.454545
3	133651289	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.230769
3	133651324	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.111111
3	133651325	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.117647
3	133651383	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.3
3	133651385	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.2
3	133651391	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.454545
3	133651393	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.166667
3	133651417	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.333333
7	133694140	A->G	+	ENSG00000131558	EXOC4	protein_coding	Intergenic	.	.	Alu	0.214286
7	133694150	A->G	+	ENSG00000131558	EXOC4	protein_coding	Intergenic	.	.	Alu	0.285714
7	133694200	A->G	+	ENSG00000131558	EXOC4	protein_coding	Intergenic	.	.	Alu	0.214286
5	134378861	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.181818
5	134379462	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.4
5	134379468	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.272727
5	134379470	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.272727
5	134379484	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.133333
5	134379535	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0833333
5	134379552	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.08
5	134379566	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.125
5	134379590	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.615385
5	134379591	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.615385
5	134382757	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.15
5	134385830	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.235294
5	134386065	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0769231
5	134386307	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0666667
5	134386410	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.142857
5	134386415	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.117647
5	134386470	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.25
5	134386471	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.117647
5	134386474	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.166667
5	134386622	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.08
5	134745632	A->G	+	ENSG00000164615	CAMLG	protein_coding	Intergenic	.	.	Alu	0.181818
5	134883714	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.2
5	134904056	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
2	135088569	A->G	+	ENSG00000115839	RAB3GAP1	protein_coding	Intergenic	.	.	Alu	0.142857
7	135474117	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.363636
7	135474245	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.125
7	135474251	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.142857
7	135474423	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.217391
7	135479271	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.2
7	135479305	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.235294
7	135479315	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.103448
7	135479317	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.142857
7	135479347	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.758621
7	135479377	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.0909091
7	135479380	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.0909091
7	135479388	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.3
7	135479389	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.2
7	135479410	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.0909091
7	135479419	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.285714
7	135479437	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.25
7	135479473	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.117647
7	135479481	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.458333
7	135479482	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.36
7	135496883	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.636364
7	135501080	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.181818
7	135501122	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.166667
7	135501123	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.153846
7	135504433	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.315789
7	135504434	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.378378
7	135504823	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.333333
7	135504824	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.583333
7	135504825	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.75
2	135747160	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.1
2	135747227	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.157895
2	135747228	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.157895
2	135747268	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.315789
2	135747280	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.352941
2	135747289	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0909091
2	135747290	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.363636
2	135747293	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0833333
2	135748527	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.111111
2	135748758	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.166667
2	135748775	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.133333
2	135748843	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0625
2	135748844	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.151515
2	135748848	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0645161
2	135748943	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.075
2	135777789	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.2
2	135778056	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.263158
2	135778083	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.125
3	136159492	A->G	-	ENSG00000174579	MSL2	protein_coding	Intergenic	.	.	Alu	0.214286
3	136441170	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.666667
3	136441171	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.25
3	136657295	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.666667
3	136657336	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.230769
3	136657337	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.142857
3	136657367	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.615385
3	136657368	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.416667
3	136657369	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.166667
3	136657463	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136700482	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.105263
3	136700571	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.176471
3	136715399	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136715427	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
X	136724350	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.5
X	136724351	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.333333
X	136724357	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.25
X	136724359	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.166667
3	136733147	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136735178	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	136735241	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.277778
3	136735264	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.1875
3	136735372	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.1
3	136744752	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.214286
3	136744903	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.1875
3	136744955	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.533333
6	136759609	A->G	-	ENSG00000197442	MAP3K5	protein_coding	Intergenic	.	.	Alu	0.7
6	136759674	A->G	-	ENSG00000197442	MAP3K5	protein_coding	Intergenic	.	.	Alu	0.272727
6	136759697	A->G	-	ENSG00000197442	MAP3K5	protein_coding	Intergenic	.	.	Alu	0.153846
X	136871712	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.2
X	136877094	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.545455
X	136877527	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.111111
X	136877553	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.285714
X	136877559	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.0833333
9	137208027	A->G	+	ENSG00000188566	NDOR1	protein_coding	Intergenic	.	.	Alu	0.4
9	137208582	A->G	+	ENSG00000188566	NDOR1	protein_coding	Intergenic	.	.	Alu	0.166667
9	137343778	A->G	-	ENSG00000187609	EXD3	protein_coding	Intergenic	.	.	Alu	0.2
5	137923108	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.142857
5	137923243	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.4375
5	137923253	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.2
5	137923266	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.153846
5	137976095	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.166667
5	137979042	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.1
5	137979085	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.157895
5	137979150	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.166667
5	137979177	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.416667
5	137979205	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.153846
5	137979216	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.153846
5	137979226	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.3
5	137979285	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.272727
5	137979294	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.166667
5	137980581	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.125
5	137980603	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.272727
5	137980653	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.125
5	137980729	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.2
5	137981019	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.111111
5	137981323	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.117647
7	137995600	A->G	-	ENSG00000182158	CREB3L2	protein_coding	Intergenic	.	.	Alu	0.142857
7	137995605	A->G	-	ENSG00000182158	CREB3L2	protein_coding	Intergenic	.	.	Alu	0.428571
7	137995606	A->G	-	ENSG00000182158	CREB3L2	protein_coding	Intergenic	.	.	Alu	0.2
5	138002303	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.230769
5	138002346	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.611111
5	138002409	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.5
5	138002419	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.6
5	138002445	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.45
5	138002482	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.190476
5	138030339	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.454545
5	138030344	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.2
5	138364201	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.2
5	138384065	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.181818
5	138384066	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.181818
5	138403534	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.181818
5	138416475	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.2
5	138416564	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.3
7	138476489	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.166667
2	138505654	A->G	+	ENSG00000144228	SPOPL	protein_coding	Intergenic	.	.	Alu	0.0967742
7	138509448	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.666667
7	138509449	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.1875
7	138509541	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.105263
7	138509583	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.125
7	138509584	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.5
7	138509593	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.333333
7	138509647	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.142857
5	138524431	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.3
5	138524441	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.153846
5	138524444	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.153846
5	138524506	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.2
5	138524706	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.103448
5	138524716	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.0666667
5	138573296	A->G	-	ENSG00000113013	HSPA9	protein_coding	Intergenic	.	.	Alu	0.4
2	138584562	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
5	138907159	A->G	-	ENSG00000044115	CTNNA1	protein_coding	Intergenic	.	.	Alu	0.2
5	138907160	A->G	-	ENSG00000044115	CTNNA1	protein_coding	Intergenic	.	.	Alu	0.3
5	138908083	A->G	-	ENSG00000044115	CTNNA1	protein_coding	Intergenic	.	.	Alu	0.2
6	138978509	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.222222
7	139056507	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.166667
7	139056522	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.272727
7	139056634	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.538462
7	139056679	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.166667
4	139088761	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139088826	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139088827	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.333333
4	139088896	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.315789
4	139098504	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.2
4	139102963	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.166667
7	139103133	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.142857
7	139103162	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.0909091
7	139103179	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.0714286
7	139103323	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.294118
7	139103324	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.176471
4	139106846	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.190476
4	139106865	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0833333
4	139106881	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.25
4	139106882	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.111111
4	139106908	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0833333
4	139106949	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.166667
4	139106992	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.111111
4	139107018	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.1875
4	139107019	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.117647
4	139114312	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.125
4	139114447	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	1
4	139114486	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.1
4	139114487	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	1
4	139114511	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.125
4	139114525	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	1
4	139148449	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0857143
5	139284349	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.242424
5	139284487	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.214286
5	139284488	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.214286
5	139284494	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.133333
5	139284520	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.181818
5	139284529	A->G	+	ENSG00000120725	SIL1	protein_coding	Intergenic	.	.	Alu	0.2
5	139304268	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.16
5	139304280	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.238095
5	139304324	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.142857
5	139304325	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.241379
5	139338451	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
5	139338470	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
5	139338597	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
5	139338603	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
5	139338607	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
5	139349353	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.181818
5	139349391	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139349742	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.272727
5	139349748	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.307692
5	139349749	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.357143
5	139349793	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139349842	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.1
5	139349941	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139350107	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.263158
5	139350510	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.238095
7	139368506	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.2
7	139368595	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.108696
7	139368658	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.108696
7	139368659	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.114286
7	139368663	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.212766
7	139368690	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0526316
7	139378475	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.176471
7	139378480	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.111111
4	139400788	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.142857
4	139400957	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.153846
4	139400965	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0952381
4	139400986	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0869565
5	139568877	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.125
5	139573047	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139573090	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139573114	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139573161	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.117647
5	139573222	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.148148
5	139587524	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.117647
5	139590248	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0740741
5	139590249	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.185185
5	139590251	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0740741
5	139590254	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0833333
5	139590282	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.125
5	139590284	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0666667
5	139590285	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.133333
5	139590314	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0588235
5	139590315	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.235294
5	139590347	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.125
5	139601553	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139603502	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.2
5	139603503	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.181818
5	139603585	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.181818
5	139605978	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.157895
4	140145835	A->G	-	ENSG00000196782	MAML3	protein_coding	Intergenic	.	.	Alu	0.25
4	140146162	A->G	-	ENSG00000196782	MAML3	protein_coding	Intergenic	.	.	Alu	0.3
5	140422673	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.272727
5	140469269	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.115385
5	140469270	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0714286
5	140469390	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0740741
5	140469404	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0769231
5	140469451	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.186047
5	140469452	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.155556
5	140536187	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.8
5	140536193	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.294118
5	140536194	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.294118
5	140536223	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.2
5	140536233	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.25
5	140536259	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.133333
5	140536266	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.571429
5	140536283	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.2
5	140536337	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.214286
5	140536356	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.2
8	140536361	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.125
5	140536768	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.166667
5	140536769	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.333333
5	140536840	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.357143
5	140536858	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.466667
5	140536900	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0833333
5	140536901	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0833333
5	140536910	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.304348
5	140536927	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.263158
5	140536946	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.538462
5	140536971	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.5
5	140536976	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.142857
5	140542438	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.117647
5	140542439	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.176471
5	140542444	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	140542487	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.142857
5	140542573	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.166667
5	140542612	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.545455
5	140542681	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.181818
8	140632980	A->G	-	ENSG00000123908	AGO2	protein_coding	Intergenic	.	.	Alu	0.111111
7	140727273	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.153846
7	140798704	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.181818
7	140815266	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.352941
7	140815270	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.555556
7	140815276	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.105263
7	140815302	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.277778
7	140815347	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.529412
7	140815348	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.375
7	140815350	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.266667
7	140815417	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.310345
7	140815418	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0689655
7	140815424	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.125
7	140815466	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0952381
7	140815494	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.142857
7	140815510	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.142857
7	140815554	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.25
7	140815566	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.3
7	140815571	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.172414
7	140815664	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.105263
7	140815715	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.166667
7	140873256	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.333333
7	140897616	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.166667
7	140897659	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.307692
7	140897662	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.117647
7	140897728	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.5
7	140907440	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.2
7	140907869	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.153846
7	140913550	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.214286
7	140913551	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.133333
7	140913615	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.0909091
7	140913662	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.111111
3	141518321	A->G	+	ENSG00000155903	RASA2	protein_coding	Intergenic	.	.	Alu	0.181818
3	141518336	A->G	+	ENSG00000155903	RASA2	protein_coding	Intergenic	.	.	Alu	0.583333
3	141518362	A->G	+	ENSG00000155903	RASA2	protein_coding	Intergenic	.	.	Alu	0.3
3	141518415	A->G	+	ENSG00000155903	RASA2	protein_coding	Intergenic	.	.	Alu	0.307692
7	141669340	A->G	-	ENSG00000257093	KIAA1147	protein_coding	Intergenic	.	.	Alu	1
7	141669345	A->G	-	ENSG00000257093	KIAA1147	protein_coding	Intergenic	.	.	Alu	0.2
3	141988801	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.133333
3	142018621	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	142019189	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.1
3	142019193	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.107143
3	142019202	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.333333
3	142019203	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.125
3	142019229	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.117647
3	142019232	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.136364
3	142019336	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.363636
3	142019337	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.25
3	142090653	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	142090671	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.307692
3	142090721	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	142090725	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.4
3	142090731	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.153846
5	142136499	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.3
5	142136500	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.2
5	142136960	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.3
5	142136977	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.428571
3	142316357	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.181818
3	142323370	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.3
3	142323428	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.25
3	142323432	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.272727
3	142474091	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.1
3	142482614	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.363636
3	142482660	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.2
3	142482666	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.166667
3	142483066	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.133333
3	142483090	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.117647
3	142483102	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.285714
3	142483108	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.125
3	142483127	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.142857
3	142483134	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.133333
3	142483138	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.235294
3	142483144	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.466667
3	142543875	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.5
5	142940822	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.2
5	143048654	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.333333
5	143048660	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.214286
5	143048661	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.153846
5	143048666	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.214286
2	143272510	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.2
2	143272532	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.727273
2	143272533	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.727273
2	143272538	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.416667
5	143309170	A->G	-	ENSG00000113580	NR3C1	protein_coding	Intergenic	.	.	Alu	0.181818
4	143350531	A->G	+	ENSG00000109458	GAB1	protein_coding	Intergenic	.	.	Alu	0.181818
4	143350567	A->G	+	ENSG00000109458	GAB1	protein_coding	Intergenic	.	.	Alu	0.0952381
2	143373375	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.75
2	143373376	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.75
2	143373452	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.214286
2	143373509	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	1
2	143373515	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	1
2	143373575	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.2
2	143373580	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.125
2	143373584	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.125
4	143394019	A->G	+	ENSG00000109458	GAB1	protein_coding	Intergenic	.	.	Alu	0.25
4	143394062	A->G	+	ENSG00000109458	GAB1	protein_coding	Intergenic	.	.	Alu	0.166667
2	143605750	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.914286
2	143605759	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.0540541
2	143605807	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.0740741
2	143605827	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.222222
2	143605828	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	1
2	143605933	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.142857
2	143605956	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.45
2	143605957	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.285714
2	143605958	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.25
2	143606023	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.0769231
2	143606024	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.12
6	144023845	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.181818
6	144023849	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.272727
6	144023850	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.363636
6	144023874	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.181818
6	144023879	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.307692
6	144023914	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.363636
6	144023915	A->G	-	ENSG00000118495	PLAGL1	protein_coding	Intergenic	.	.	Alu	0.636364
4	145176003	A->G	-	ENSG00000164164	OTUD4	protein_coding	Intergenic	.	.	Alu	0.166667
1	145774487	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.138889
1	145774514	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.3
1	145774615	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.105263
1	145774623	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0740741
1	145774996	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.25
1	145775003	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.25
1	145775128	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.25
1	145775164	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.125
1	145775485	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.2
1	145775641	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.3
1	145776233	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.166667
1	145776302	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.115385
1	145776303	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.12
1	145776309	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0740741
1	145776321	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0769231
1	145776332	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.24
1	145776336	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.28
1	145776337	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.166667
1	145776383	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.157895
1	145776436	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.357143
1	145776437	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.142857
1	145781999	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0714286
1	145782014	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.413793
1	145782177	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.214286
1	145782178	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.285714
1	145793981	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.217391
1	145793992	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.157895
1	145794081	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.153846
1	145794570	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.166667
1	145835280	A->G	+	ENSG00000186141	POLR3C	protein_coding	Intergenic	.	.	Alu	0.166667
7	146174378	A->G	+	ENSG00000174469	CNTNAP2	protein_coding	Intergenic	.	.	Alu	0.428571
7	146174386	A->G	+	ENSG00000174469	CNTNAP2	protein_coding	Intergenic	.	.	Alu	0.3125
7	146174401	A->G	+	ENSG00000174469	CNTNAP2	protein_coding	Intergenic	.	.	Alu	0.454545
7	146227170	A->G	+	ENSG00000174469	CNTNAP2	protein_coding	Intergenic	.	.	Alu	0.166667
7	146311516	A->G	+	ENSG00000174469	CNTNAP2	protein_coding	Intergenic	.	.	Alu	0.133333
5	146487474	A->G	+	ENSG00000113649	TCERG1	protein_coding	Intergenic	.	.	Alu	0.0454545
5	146487582	A->G	+	ENSG00000113649	TCERG1	protein_coding	Intergenic	.	.	Alu	0.0526316
5	146487624	A->G	+	ENSG00000113649	TCERG1	protein_coding	Intergenic	.	.	Alu	0.0625
5	146487650	A->G	+	ENSG00000113649	TCERG1	protein_coding	Intergenic	.	.	Alu	0.0416667
1	146941675	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.3
1	146941704	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.266667
1	146941709	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.266667
1	146941711	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.285714
7	148838244	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0689655
7	148838252	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0714286
7	148838268	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.192308
7	148869435	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.153846
7	148869443	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0952381
7	148869456	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.117647
7	148869557	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.133333
7	148869565	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.0909091
7	148869632	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.166667
7	149243206	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.117647
7	149243210	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.2
7	149243227	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.0869565
7	149243240	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.0714286
7	149243246	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.142857
7	149243250	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.37037
7	149243272	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	1
7	149243278	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.185185
7	149243299	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.333333
7	149243318	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.0909091
7	149245163	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.153846
7	149245184	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.333333
7	149245189	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.2
7	149245253	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.166667
7	149245257	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.384615
7	149245272	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.2
7	149245294	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.230769
6	149348268	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.1
6	149348323	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0606061
6	149348331	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.178571
6	149348360	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0465116
6	149348708	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.153846
6	149348735	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.1
6	149348739	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	149348780	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	149348783	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.125
6	149348819	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.176471
6	149348873	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.2
6	149349237	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.333333
6	149349300	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	149500404	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.0566038
5	149500409	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.0377358
6	149578405	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.142857
6	149578406	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.133333
6	149583182	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.307692
6	149583316	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.125
6	149600512	A->G	+	ENSG00000186625	KATNA1	protein_coding	Intergenic	.	.	Alu	0.133333
6	149600534	A->G	+	ENSG00000186625	KATNA1	protein_coding	Intergenic	.	.	Alu	0.363636
4	150295285	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.1
4	150295300	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.166667
4	150295368	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0833333
4	150295376	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.36
4	150295379	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.333333
4	150295396	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.578947
4	150295398	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.117647
4	150295416	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.190476
4	150295469	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.529412
4	150295470	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.666667
4	150295472	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.866667
1	150309507	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
1	150309562	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
1	150340778	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.153846
1	150340855	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.153846
1	150340885	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.272727
5	150365071	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.272727
5	150365159	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.25
5	150365174	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.153846
5	150365191	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.3125
5	150365195	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.133333
5	150365201	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.142857
5	150365217	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.3
5	150365369	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.2
1	150378799	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.272727
1	150378803	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.363636
1	150378807	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.166667
1	150379054	A->G	+	ENSG00000163125	RPRD2	protein_coding	Intergenic	.	.	Alu	0.181818
3	150431067	A->G	+	ENSG00000196428	TSC22D2	protein_coding	Intergenic	.	.	Alu	0.125
3	150431078	A->G	+	ENSG00000196428	TSC22D2	protein_coding	Intergenic	.	.	Alu	0.173913
3	150431098	A->G	+	ENSG00000196428	TSC22D2	protein_coding	Intergenic	.	.	Alu	0.103448
1	150570877	A->G	-	ENSG00000203804	ADAMTSL4-AS1	processed_transcript	Intergenic	.	.	Alu	0.3
1	150570878	A->G	-	ENSG00000203804	ADAMTSL4-AS1	processed_transcript	Intergenic	.	.	Alu	0.3
1	150572284	A->G	-	ENSG00000203804	ADAMTSL4-AS1	processed_transcript	Intergenic	.	.	Alu	0.181818
1	150572397	A->G	-	ENSG00000203804	ADAMTSL4-AS1	processed_transcript	Intergenic	.	.	Alu	0.142857
1	150602478	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.166667
1	150602496	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.416667
1	150610802	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.2
1	150610848	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.2
1	150612650	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.428571
1	150612683	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.153846
1	150612688	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.272727
1	150614625	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.272727
3	150619100	A->G	+	ENSG00000198843	SELENOT	protein_coding	Intergenic	.	.	Alu	0.4
5	150713546	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.1875
5	150713982	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.111111
5	150714031	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.363636
5	150714079	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.347826
5	150728907	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0566038
5	150728908	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0754717
5	150728938	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.097561
5	150728943	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0697674
5	150728970	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0833333
5	150729002	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0487805
5	150729094	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0909091
5	150729098	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0869565
5	150729137	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.125
5	150729141	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0625
5	150729161	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0731707
4	150738076	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.230769
4	150738119	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
4	150738135	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.272727
4	150738170	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.294118
4	150738173	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.352941
4	150738270	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.133333
3	150755423	A->G	-	ENSG00000181788	SIAH2	protein_coding	Intergenic	.	.	Alu	0.0645161
4	150788135	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.125
4	150788140	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.117647
4	150788141	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.210526
4	150788149	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0952381
4	150788160	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0769231
4	150788164	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.1
4	150788201	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0625
4	150788211	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.272727
4	150788224	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
4	150788302	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.416667
4	150788326	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.142857
5	150788425	A->G	+	ENSG00000256235	SMIM3	protein_coding	Intergenic	.	.	Alu	0.111111
5	150788529	A->G	+	ENSG00000256235	SMIM3	protein_coding	Intergenic	.	.	Alu	0.1
4	150841715	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.12963
4	150841809	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0851064
4	150841817	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0434783
4	150841853	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.177778
4	150841859	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.155556
4	150841861	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.116279
1	150930982	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	150930986	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	150930998	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.769231
1	150931005	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.133333
1	150931054	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.285714
1	150931179	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.416667
1	150931422	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	150931424	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	150931505	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.2
1	150931506	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.133333
1	150957772	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.125
1	150957796	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.142857
1	150957801	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	150957811	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	150957842	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.2
1	150957952	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.666667
1	150958004	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.285714
1	150958021	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.125
1	150958037	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.157895
1	150958064	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	150958103	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.181818
1	150958104	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	150958117	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.2
1	150958390	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.5
1	150958416	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.454545
1	150958419	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.333333
1	150958451	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.6
1	150958479	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.818182
1	150958484	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.545455
1	150958522	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	150958525	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.25
1	150993344	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.2
4	151110630	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.105263
4	151110699	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0689655
4	151110700	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0714286
4	151110739	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.153846
4	151110766	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0714286
4	151110792	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0526316
4	151110795	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.222222
4	151110851	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.171429
4	151115838	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0689655
4	151120140	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.103448
4	151120145	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0769231
4	151120169	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.142857
4	151125761	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0769231
4	151126592	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.214286
4	151126607	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.172414
4	151126608	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.142857
4	151126618	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0833333
4	151126644	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.111111
4	151126645	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0740741
4	151130187	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.2
4	151130687	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.2
4	151130761	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.125
4	151130834	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.210526
4	151130862	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.1875
4	151130890	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.235294
4	151130928	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0606061
1	151218790	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.3
1	151223869	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.3
6	151245389	A->G	+	ENSG00000131016	AKAP12	protein_coding	Intergenic	.	.	Alu	0.142857
3	151281134	A->G	+	ENSG00000144893	MED12L	protein_coding	Intergenic	.	.	Alu	0.181818
6	151394008	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
6	151394028	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
6	151394030	A->G	+	.	.	.	Intergenic	.	.	Alu	0.235294
6	151397788	A->G	+	.	.	.	Intergenic	.	.	Alu	0.7
6	151397825	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
1	151434787	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.4
1	151434993	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.333333
1	151434997	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.285714
1	151435100	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.333333
1	151436094	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.1
1	151436152	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.181818
1	151436504	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.416667
1	151436509	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.153846
1	151436516	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.176471
1	151449774	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.25
1	151449784	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.133333
1	151449809	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.1875
1	151450062	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.117647
1	151450065	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.25
1	151450137	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151450170	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.333333
1	151450210	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.1875
1	151450235	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.142857
1	151450278	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.25
1	151450444	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.0909091
1	151450504	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.5
1	151450590	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.214286
1	151450598	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.117647
1	151450599	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.176471
1	151450604	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.15
1	151455942	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.3
1	151456016	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
7	151496891	A->G	-	ENSG00000106615	RHEB	protein_coding	Intergenic	.	.	Alu	0.105263
7	151496912	A->G	-	ENSG00000106615	RHEB	protein_coding	Intergenic	.	.	Alu	0.2
7	151496918	A->G	-	ENSG00000106615	RHEB	protein_coding	Intergenic	.	.	Alu	0.235294
5	151756214	A->G	-	ENSG00000177556	ATOX1	protein_coding	Intergenic	.	.	Alu	0.2
5	151793893	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.619048
5	151793903	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.1
5	151793907	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.333333
5	151793920	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.136364
5	151793934	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.473684
2	151821746	A->G	-	ENSG00000162980	ARL5A	protein_coding	Intergenic	.	.	Alu	0.111111
7	152241338	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.105263
7	152309588	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.166667
7	152309632	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.235294
7	152309658	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.111111
7	152309697	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.2
7	152309698	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.133333
7	152309717	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
7	152325553	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.2
3	152329445	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0576923
3	152329502	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0361446
3	152329506	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0481928
3	152329528	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0674157
3	152329542	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0253165
7	152391269	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.153846
7	152391386	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.133333
7	152391406	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.35
7	152391410	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.210526
7	152391411	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.105263
7	152391438	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.428571
7	152391736	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.307692
7	152391792	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.307692
7	152404886	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152404936	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.153846
7	152405382	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0909091
7	152405404	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152405409	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.157895
7	152405438	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152414880	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152426316	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152426376	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0294118
7	152426436	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.104167
7	152426457	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.097561
4	152521931	A->G	-	ENSG00000109670	FBXW7	protein_coding	Intergenic	.	.	Alu	0.0625
4	152521984	A->G	-	ENSG00000109670	FBXW7	protein_coding	Intergenic	.	.	Alu	0.0869565
4	153480399	A->G	+	ENSG00000121210	TMEM131L	protein_coding	Intergenic	.	.	Alu	0.2
1	153860048	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
1	153886601	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
X	154066035	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.272727
X	154066123	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.166667
X	154066130	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.181818
X	154066137	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.384615
X	154066138	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.307692
X	154066139	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.307692
X	154070869	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.4
X	154081086	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.153846
X	154081112	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.105263
X	154081309	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.117647
X	154087668	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.2
X	154090282	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.111111
6	154738064	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.153846
5	154764802	A->G	+	ENSG00000155506	LARP1	protein_coding	Intergenic	.	.	Alu	0.3125
6	154793665	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.08
6	154793668	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.16
6	154793695	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.111111
6	154793736	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.181818
6	154825810	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.538462
3	155098513	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.333333
3	155107168	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.166667
3	155107197	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.333333
3	155107328	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.4
1	155315562	A->G	+	ENSG00000160752	FDPS	protein_coding	Intergenic	.	.	Alu	0.3
1	155315568	A->G	+	ENSG00000160752	FDPS	protein_coding	Intergenic	.	.	Alu	0.3
1	155502211	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.2
1	155538469	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.153846
1	155553935	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.105263
1	155554024	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.125
1	155554053	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.2
1	155554158	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155557401	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.117647
1	155558648	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.2
1	155558782	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.117647
1	155558933	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.3
1	155558942	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155558973	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155559112	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.307692
1	155681529	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.148148
1	155681537	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.521739
1	155681555	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.6
1	155681903	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	155681904	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0789474
1	155681912	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0444444
1	155681957	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0681818
1	155684633	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.3125
1	155684636	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.125
1	155684653	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.133333
1	155684706	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.15625
1	155684714	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.354839
1	155684724	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.129032
1	155684779	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.08
1	155684787	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	155684813	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.12
1	155684858	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.5
1	155684859	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.111111
1	155836414	A->G	-	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.2
3	155851316	A->G	-	ENSG00000284952	AC104472.3	protein_coding	Intergenic	.	.	Alu	0.454545
3	155884271	A->G	+	ENSG00000163655	GMPS	protein_coding	Intergenic	.	.	Alu	0.2
1	155919132	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.3
1	155922242	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.125
1	155922243	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.16
1	155922244	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.576923
1	155922274	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0681818
1	155922278	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0888889
1	155922284	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0425532
1	155922294	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0408163
1	155922310	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0416667
1	155922315	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0576923
1	155922328	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.142857
1	155922350	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.166667
1	155922351	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.0697674
1	155922382	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.115385
1	155922387	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.448276
1	155922417	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.291667
1	155922418	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.136364
1	155924338	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.15
1	155924347	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.259259
1	155924357	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.73913
1	155924373	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.125
1	155924413	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.6875
1	155924418	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.4
1	155936785	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
1	155936807	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
1	155937122	A->G	-	.	.	.	Intergenic	.	.	Alu	0.545455
1	155937469	A->G	-	.	.	.	Intergenic	.	.	Alu	0.416667
1	155937473	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
1	155937552	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
1	155937607	A->G	-	.	.	.	Intergenic	.	.	Alu	0.8
1	155937608	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
1	155938906	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
1	155939095	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
1	155939316	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	155939511	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
1	155939533	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
1	155939602	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
1	155939605	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
1	155939625	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
1	155939627	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	155939886	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	155939890	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
1	155972799	A->G	-	ENSG00000116584	ARHGEF2	protein_coding	Intergenic	.	.	Alu	0.153846
6	156129576	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
6	156129578	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
6	156129640	A->G	-	.	.	.	Intergenic	.	.	Alu	0.263158
6	156129654	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1
6	156129667	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
6	156129685	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
6	156129691	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0769231
6	156129769	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
6	156129782	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
6	156129783	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0769231
6	156195861	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
6	156195875	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
1	156230961	A->G	+	ENSG00000260238	PMF1-BGLAP	protein_coding	Intergenic	.	.	Alu	0.166667
6	156835119	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.266667
6	156835125	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.2
6	156946079	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.454545
6	157114346	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.2
6	157114347	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.3
6	157127949	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.142857
7	157232574	A->G	+	ENSG00000009335	UBE3C	protein_coding	Intergenic	.	.	Alu	0.181818
2	157332111	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
2	157332153	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
2	157332272	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
5	157386773	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.166667
5	157386800	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.117647
5	157386813	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.235294
5	157386870	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.2
6	157826332	A->G	+	ENSG00000130340	SNX9	protein_coding	Intergenic	.	.	Alu	0.363636
6	157826341	A->G	+	ENSG00000130340	SNX9	protein_coding	Intergenic	.	.	Alu	0.333333
6	157826482	A->G	+	ENSG00000130340	SNX9	protein_coding	Intergenic	.	.	Alu	0.117647
5	157830156	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.173913
5	157830691	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.2
5	157830982	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.2
5	157831838	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.166667
5	157831895	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.142857
5	157837870	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.111111
7	158776920	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0909091
4	158779945	A->G	+	ENSG00000052795	FNIP2	protein_coding	Intergenic	.	.	Alu	0.166667
4	158780133	A->G	+	ENSG00000052795	FNIP2	protein_coding	Intergenic	.	.	Alu	0.133333
4	158780134	A->G	+	ENSG00000052795	FNIP2	protein_coding	Intergenic	.	.	Alu	0.375
4	158780149	A->G	+	ENSG00000052795	FNIP2	protein_coding	Intergenic	.	.	Alu	0.181818
4	158780157	A->G	+	ENSG00000052795	FNIP2	protein_coding	Intergenic	.	.	Alu	0.3
7	158789417	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.34375
7	158789449	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.12
7	158789454	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.25
7	158789468	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.111111
7	158789472	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.111111
7	158789478	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.2
7	158789485	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.15
7	158789489	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.142857
7	158789494	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.272727
7	158789495	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.227273
7	158789544	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.333333
7	158789575	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.2
7	158789612	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.307692
7	158789613	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.272727
7	158789614	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.272727
7	158792298	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.333333
7	158792428	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.181818
7	158792791	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.142857
7	158792804	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.176471
7	158792826	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0588235
7	158792841	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.121212
7	158792865	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.181818
7	158792866	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0952381
7	158792880	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.15
7	158792907	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.466667
7	158792974	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0769231
7	158792989	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.423077
7	158793005	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0588235
7	158793024	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0882353
7	158793035	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0833333
7	158793040	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.162162
7	158793041	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.243243
7	158799543	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.133333
7	158799603	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.333333
7	158799873	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.2
7	158800322	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.15
7	158800326	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.15
4	159113535	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.117647
4	159121776	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.5625
4	159121852	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.181818
4	159121927	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.125
4	159121980	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.2
4	159121984	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.166667
4	159121989	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	1
6	159734197	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.133333
6	159734203	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.352941
6	159734242	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	1
6	159734248	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.0540541
6	159734252	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.0526316
6	159734266	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.0512821
6	159734291	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.1
6	159734555	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.0833333
6	159734602	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.285714
6	159734627	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.181818
2	159734892	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.114286
1	160302687	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.133333
1	160302693	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.148148
1	160302759	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.157895
1	160302826	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.363636
1	160302981	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0952381
1	160302988	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.727273
1	160302990	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.652174
1	160303051	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.1
1	162503354	A->G	+	ENSG00000152332	UHMK1	protein_coding	Intergenic	.	.	Alu	0.3
4	165300208	A->G	+	ENSG00000109466	KLHL2	protein_coding	Intergenic	.	.	Alu	0.2
6	167009271	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.214286
6	167009272	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.266667
6	167009332	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.3
6	167009334	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.272727
6	167009389	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.3
6	167009416	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.285714
6	167009713	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.235294
6	167009715	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.125
6	167009716	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.117647
6	167009738	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.111111
6	167020794	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.2
2	168735675	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.142857
2	169588742	A->G	+	ENSG00000138398	PPIG	protein_coding	Intergenic	.	.	Alu	0.153846
2	169589989	A->G	+	ENSG00000138398	PPIG	protein_coding	Intergenic	.	.	Alu	0.181818
5	169891868	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.133333
5	169891874	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.166667
5	169891875	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.157895
3	169973543	A->G	+	ENSG00000008952	SEC62	protein_coding	Intergenic	.	.	Alu	0.0909091
3	169973584	A->G	+	ENSG00000008952	SEC62	protein_coding	Intergenic	.	.	Alu	0.611111
3	169973588	A->G	+	ENSG00000008952	SEC62	protein_coding	Intergenic	.	.	Alu	0.125
3	170152231	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.133333
3	170152309	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.133333
3	170152458	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.133333
3	170152459	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.142857
3	170152723	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.142857
3	170242391	A->G	+	ENSG00000163558	PRKCI	protein_coding	Intergenic	.	.	Alu	0.181818
1	171492935	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.666667
1	171492985	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.466667
2	171721031	A->G	+	ENSG00000077380	DYNC1I2	protein_coding	Intergenic	.	.	Alu	0.2
2	171765538	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
2	171768461	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
2	171768493	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
2	171935761	A->G	+	ENSG00000115840	SLC25A12	protein_coding	Intergenic	.	.	Alu	0.2
5	171998448	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
5	171998553	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.307692
5	171998579	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.238095
5	171998580	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.105263
3	172173545	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.0869565
3	172179644	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.368421
3	172179648	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.111111
3	172179649	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.117647
3	172179696	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.214286
3	172179704	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.461538
3	172179736	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.25
3	172179762	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.538462
3	172179772	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.4
3	172179840	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.133333
3	172262777	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.2
3	172262786	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.117647
3	172386590	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.125
3	172386595	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.214286
3	172386621	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.4
5	172839287	A->G	+	ENSG00000113719	ERGIC1	protein_coding	Intergenic	.	.	Alu	0.3
5	172851024	A->G	+	ENSG00000113719	ERGIC1	protein_coding	Intergenic	.	.	Alu	0.2
5	173082805	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.125
4	173209949	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.142857
2	173946918	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.08
2	173946978	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.0740741
2	173946982	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.08
2	173946995	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.0769231
1	173990236	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.263158
1	173990354	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.117647
1	174003166	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.176471
1	174003204	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.2
1	174003239	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.2
1	174003265	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.5625
1	174003275	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.5625
1	174003340	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.416667
1	174003790	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.137931
1	174003800	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.173913
1	174003826	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.12
1	174003836	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.2
1	174003857	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.25
1	174003864	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.307692
1	174016518	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.214286
2	174218923	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.181818
2	174219068	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.181818
2	174219095	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.166667
2	174219097	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.909091
2	174219512	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.125
2	174219527	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.230769
2	174219596	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.181818
2	174219625	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.153846
2	174219648	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.222222
2	174219649	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.222222
2	174219668	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.142857
2	174219689	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.2
2	174219695	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.384615
2	174379918	A->G	-	ENSG00000138433	CIR1	protein_coding	Intergenic	.	.	Alu	0.133333
3	174467340	A->G	+	ENSG00000177694	NAALADL2	protein_coding	Intergenic	.	.	Alu	0.3
3	174467345	A->G	+	ENSG00000177694	NAALADL2	protein_coding	Intergenic	.	.	Alu	0.2
1	174859293	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.5
1	174859319	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.153846
2	175142221	A->G	-	ENSG00000115966	ATF2	protein_coding	Intergenic	.	.	Alu	0.166667
1	175968006	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176041509	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.5
1	176041513	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	176041531	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	176041552	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.333333
1	176064716	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.222222
1	176070579	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.3
1	176070899	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.428571
1	176070911	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	176070923	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.117647
1	176070928	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.125
5	176262684	A->G	+	ENSG00000170085	SIMC1	protein_coding	Intergenic	.	.	Alu	0.153846
5	176454217	A->G	+	ENSG00000113194	FAF2	protein_coding	Intergenic	.	.	Alu	0.133333
5	177066804	A->G	+	ENSG00000113761	ZNF346	protein_coding	Intergenic	.	.	Alu	0.142857
5	177071432	A->G	+	ENSG00000113761	ZNF346	protein_coding	Intergenic	.	.	Alu	0.222222
3	177100988	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.2
3	177100994	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.4
3	177188022	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.125
3	177188025	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.235294
3	177188039	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.111111
3	177188096	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.2
2	177228008	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.12
2	177228018	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.108108
2	177228019	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.05
2	177246811	A->G	-	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.111111
5	177321867	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
5	177321868	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
5	178217456	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.1
5	178217680	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.26087
5	178217681	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.391304
5	178217695	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.0666667
5	178217738	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.314286
5	178217770	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.315789
2	178434213	A->G	-	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.2
2	178434216	A->G	-	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.181818
2	178435067	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.153846
2	178435096	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.2
2	178435123	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.5
2	178435129	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.272727
3	179173458	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.176471
3	179173464	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.0869565
3	179178007	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.153846
2	179247563	A->G	-	ENSG00000187231	SESTD1	protein_coding	Intergenic	.	.	Alu	0.142857
3	179444630	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.230769
3	179444652	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.315789
3	179444662	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.125
3	179444690	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.230769
5	179829832	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.125
5	179829841	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.210526
5	179829871	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.153846
5	179829983	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.166667
5	179829987	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.4375
5	179830041	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.230769
5	179830051	A->G	+	ENSG00000161011	SQSTM1	protein_coding	Intergenic	.	.	Alu	0.133333
5	179999190	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.133333
5	179999267	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.454545
5	180033041	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.5
5	180033046	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.307692
5	180033059	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.117647
5	180033102	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.285714
5	180033106	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.157895
5	180033233	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.125
5	180033268	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.428571
5	180039282	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.153846
5	180039316	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.16
5	180039337	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.0869565
5	180039455	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.125
5	180497207	A->G	+	ENSG00000113300	CNOT6	protein_coding	Intergenic	.	.	Alu	0.181818
1	180636805	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.125
1	180636881	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.5
1	180636931	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.333333
1	180636972	A->G	+	ENSG00000143324	XPR1	protein_coding	Intergenic	.	.	Alu	0.133333
3	180917693	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.142857
3	180917694	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	180917732	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.1
3	180917844	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.115385
3	180917867	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.133333
3	180917899	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.181818
3	180930777	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.208333
3	180930780	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.08
3	180930856	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.25
3	180930857	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.111111
3	180930870	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.117647
3	180930875	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.105263
3	180930882	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.1
3	180930949	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.4
3	180931319	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.153846
3	180942101	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.136364
3	180942123	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.285714
3	180942124	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.52381
3	180942129	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.25
3	180942257	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.2
3	180942299	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.1
3	180942319	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.115385
3	180942330	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.12
3	180961217	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.5
3	180961219	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.466667
3	182830236	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.45
3	182830248	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.36
3	182830278	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.181818
3	182841832	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.363636
1	182850520	A->G	+	ENSG00000135829	DHX9	protein_coding	Intergenic	.	.	Alu	0.0769231
3	182870849	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.272727
3	182906467	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.538462
3	182906480	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.565217
3	182906492	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.48
3	182906523	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.192308
3	182906530	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.115385
3	182906543	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.166667
3	182906544	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.315789
3	182906589	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.133333
3	182906733	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.181818
3	182906839	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.25
3	182906903	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.125
3	182906910	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.214286
3	182906911	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.153846
3	182906950	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.586207
3	182906978	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.0869565
3	182907012	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.714286
3	182907013	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.380952
3	182907014	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.315789
3	182907050	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.222222
3	182907075	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.727273
3	183031669	A->G	-	ENSG00000078070	MCCC1	protein_coding	Intergenic	.	.	Alu	0.125
3	183031777	A->G	-	ENSG00000078070	MCCC1	protein_coding	Intergenic	.	.	Alu	0.3
3	183639070	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.117647
3	183639113	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0909091
3	183639122	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.125
3	183639891	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0645161
3	183639905	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0540541
3	183641223	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.2
3	183641277	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0666667
3	183641357	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0909091
3	183641367	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0909091
3	183647229	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.133333
3	183647501	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.117647
3	183673076	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0793651
3	183673085	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0833333
3	183673098	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0833333
3	183675661	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0526316
3	183675675	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0491803
3	183675695	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0232558
3	183675730	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.028169
3	183676196	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.333333
3	183731244	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.181818
3	183731248	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.2
3	183731249	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.2
3	183741727	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.357143
3	183741731	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.166667
3	183742194	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.117647
2	184695583	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.111111
2	184695618	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	1
2	184695620	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.583333
2	184695679	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.1
2	184695680	A->G	+	ENSG00000170396	ZNF804A	protein_coding	Intergenic	.	.	Alu	0.117647
4	184781677	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.3
4	184781747	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.181818
4	184781748	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.272727
4	184781774	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.2
4	184781777	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.2
1	184960767	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.304348
1	184960769	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.416667
1	184960824	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.2
1	184960831	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.461538
1	184960833	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.428571
1	184960862	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.166667
1	184961207	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.166667
1	184961266	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.15
1	184961267	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.181818
1	184961275	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.0833333
3	185626967	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.133333
3	185626985	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	185707142	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.3
3	185707143	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.272727
3	185707376	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	185798999	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.384615
3	185799049	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.363636
2	186181046	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
2	186181060	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
2	186645780	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.636364
2	186645825	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.3
1	186837474	A->G	+	ENSG00000116711	PLA2G4A	protein_coding	Intergenic	.	.	Alu	0.181818
1	186837475	A->G	+	ENSG00000116711	PLA2G4A	protein_coding	Intergenic	.	.	Alu	0.2
2	190886687	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.142857
2	191076014	A->G	-	ENSG00000138378	STAT4	protein_coding	Intergenic	.	.	Alu	0.571429
3	194650017	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	194650058	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.5
3	194650113	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.285714
3	194650152	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.2
3	194650185	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.615385
3	194650191	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.5
3	194650192	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.357143
3	195321285	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	195321360	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.125
3	195321369	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.130435
3	195321699	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0909091
3	195321737	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0689655
3	195321741	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0625
3	195321751	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0666667
3	195377282	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.15
3	195377309	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195417012	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.2
3	195417036	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195417044	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0588235
3	195417050	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.129032
3	195417159	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	195417183	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.129032
3	195417204	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.205128
3	195417205	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0526316
3	195417227	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.114286
3	195417731	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.7
3	195431648	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0714286
3	195436253	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.125
3	195438223	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	195438300	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	195439300	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	196052366	A->G	-	ENSG00000072274	TFRC	protein_coding	Intergenic	.	.	Alu	0.181818
2	196161717	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.222222
2	196162715	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.0625
2	196162782	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.08
2	196162833	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.142857
3	196363175	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.272727
3	196363176	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.636364
3	196424027	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.153846
3	196424521	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.181818
3	196481939	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.277778
3	196482053	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.238095
3	196482074	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.0833333
3	196482079	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.08
3	196484296	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.142857
3	196484310	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.173913
3	196566228	A->G	-	ENSG00000185798	WDR53	protein_coding	Intergenic	.	.	Alu	0.2
3	196642923	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.1
3	196642949	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.133333
3	196642991	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.142857
3	196648495	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.176471
3	196648503	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.176471
3	196648547	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0952381
3	196648552	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.235294
3	196648565	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.142857
3	196648591	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.142857
3	196648623	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.266667
3	196655112	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0714286
3	196655114	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0833333
3	196657460	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0540541
3	196657543	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0625
3	196906099	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.181818
3	196906109	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.5
3	196907202	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.111111
3	196907296	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.0952381
3	196908195	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.0909091
3	196911632	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.176471
3	196911689	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.384615
3	196911690	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.307692
3	196911731	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.2
3	196911742	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.117647
3	196911797	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.25
3	196927532	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.153846
3	196927623	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.105263
2	197286507	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.103448
2	197286513	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.107143
2	197286577	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.115385
2	197286597	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.130435
2	197289998	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.105263
2	197289999	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.111111
2	197290025	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.153846
2	197491427	A->G	-	ENSG00000144381	HSPD1	protein_coding	Intergenic	.	.	Alu	0.166667
2	200737889	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.2
2	200738139	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.166667
2	200738173	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.214286
2	200738174	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.357143
2	200738200	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.545455
2	200738206	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.133333
2	200738375	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.266667
2	200738405	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.1875
2	200738406	A->G	+	ENSG00000284084	AOX3P-AOX2P	processed_transcript	Intergenic	.	.	Alu	0.176471
2	200739154	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.08
2	200739200	A->G	+	ENSG00000243478	AOX2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.125
2	201066166	A->G	-	ENSG00000155744	FAM126B	protein_coding	Intergenic	.	.	Alu	0.142857
2	201066170	A->G	-	ENSG00000155744	FAM126B	protein_coding	Intergenic	.	.	Alu	0.214286
2	201133810	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.222222
2	201134089	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.384615
2	201134132	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.2
2	201142066	A->G	+	ENSG00000003402	CFLAR	protein_coding	Intergenic	.	.	Alu	0.2
1	201959880	A->G	+	ENSG00000134375	TIMM17A	protein_coding	Intergenic	.	.	Alu	0.181818
1	202139316	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.0952381
1	202139318	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.0952381
1	202139330	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.111111
1	202139776	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.166667
1	202139824	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.136364
1	202139825	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.130435
1	202139826	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.0909091
1	202139827	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.142857
1	202139830	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.181818
1	202139923	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.307692
2	202226935	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.105263
2	202227016	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.105263
2	202227018	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.473684
2	202227030	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.5
2	202227031	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.117647
2	202227083	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.388889
2	202227333	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.444444
2	202227345	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	202227346	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.125
2	202227411	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	1
2	202227412	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.130435
2	202235097	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	202235781	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	202286276	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.1
2	202288364	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.111111
2	202288373	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.214286
2	202288684	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.1875
2	202288695	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.15
1	202753882	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.2
1	202768910	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.142857
1	202768911	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.266667
1	202768912	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.25
1	202768914	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.1
1	202769165	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.133333
1	202769169	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.117647
1	202769175	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.444444
2	202803134	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.3
2	202803146	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.3
2	202803158	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.4
2	202803183	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.5
2	202803237	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.333333
2	202803254	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.428571
2	202803281	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.2
2	202803286	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.111111
2	202803333	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.2
2	203298766	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.181818
2	203298878	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.181818
2	203298914	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.272727
2	203298924	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.25
2	203298941	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.2
2	203300769	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.357143
2	203303509	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.4
2	203303520	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.181818
2	203303525	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.272727
2	203303755	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.166667
2	203303756	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.333333
2	203303761	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.166667
2	203303956	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.307692
2	203303958	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.153846
1	203312659	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
1	203312660	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
1	203824161	A->G	+	ENSG00000058673	ZC3H11A	protein_coding	Intergenic	.	.	Alu	0.0909091
1	203824825	A->G	+	ENSG00000058673	ZC3H11A	protein_coding	Intergenic	.	.	Alu	0.166667
1	205730557	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.176471
1	205738301	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.181818
1	205739868	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	205740114	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.130435
1	205740140	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.611111
1	205740277	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.111111
1	205740278	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.176471
1	205740280	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.210526
1	205740401	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.214286
1	205740498	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.3
1	205744695	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.157895
1	205744725	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.236842
1	205744729	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.333333
1	205744730	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0625
1	205744770	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0606061
1	205744793	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.432432
1	205744803	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0526316
1	205744869	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	205744904	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0555556
1	205744927	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.142857
2	206068909	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.133333
2	206070154	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.363636
2	206071030	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0952381
2	206071080	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0512821
2	206071103	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0714286
2	206071166	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0740741
2	206071183	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0714286
2	206073587	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.4
2	206073616	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.153846
2	207540561	A->G	+	ENSG00000118260	CREB1	protein_coding	Intergenic	.	.	Alu	0.5
1	211825270	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.15
1	211825289	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.222222
1	211825312	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.181818
1	212054538	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.272727
1	212344978	A->G	+	ENSG00000066027	PPP2R5A	protein_coding	Intergenic	.	.	Alu	0.333333
1	212345090	A->G	+	ENSG00000066027	PPP2R5A	protein_coding	Intergenic	.	.	Alu	0.285714
1	213178954	A->G	+	ENSG00000136643	RPS6KC1	protein_coding	Intergenic	.	.	Alu	0.272727
1	213178959	A->G	+	ENSG00000136643	RPS6KC1	protein_coding	Intergenic	.	.	Alu	0.153846
2	216141939	A->G	+	ENSG00000079246	XRCC5	protein_coding	Intergenic	.	.	Alu	0.153846
2	216141957	A->G	+	ENSG00000079246	XRCC5	protein_coding	Intergenic	.	.	Alu	0.333333
2	222565853	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	223842039	A->G	-	ENSG00000143514	TP53BP2	protein_coding	Intergenic	.	.	Alu	0.142857
1	223842064	A->G	-	ENSG00000143514	TP53BP2	protein_coding	Intergenic	.	.	Alu	0.111111
1	223842072	A->G	-	ENSG00000143514	TP53BP2	protein_coding	Intergenic	.	.	Alu	0.111111
1	223842077	A->G	-	ENSG00000143514	TP53BP2	protein_coding	Intergenic	.	.	Alu	0.176471
1	223842078	A->G	-	ENSG00000143514	TP53BP2	protein_coding	Intergenic	.	.	Alu	0.125
1	224411830	A->G	-	ENSG00000162923	WDR26	protein_coding	Intergenic	.	.	Alu	0.2
2	224516414	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.157895
2	224516449	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.121212
2	224516455	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.297297
2	224516465	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.193548
2	224516481	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.272727
2	224516520	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.105263
2	224516521	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.105263
2	224516543	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.176471
2	224516549	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.0952381
2	224516566	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.176471
2	224516811	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.181818
2	224516924	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.2
2	227539300	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.166667
2	227539541	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.290323
2	227539546	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.0625
2	227539610	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.392857
2	227539612	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.708333
2	227539684	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.388889
2	227539690	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.157895
2	227539720	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.210526
2	227539910	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.727273
2	227539915	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.7
2	227539935	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.153846
2	227539936	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.461538
2	227540001	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.125
2	227540016	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.357143
2	227540021	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.153846
2	227540071	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.333333
2	229831457	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.2
2	229831545	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.538462
2	229831548	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.181818
2	229831562	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.181818
2	229831569	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.416667
2	230424621	A->G	+	ENSG00000067066	SP100	protein_coding	Intergenic	.	.	Alu	0.142857
2	230748629	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.153846
2	230748630	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.133333
2	230753493	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.2
2	230753543	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.181818
2	230753626	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.214286
2	230753683	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.272727
2	230753688	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.2
2	231081050	A->G	+	ENSG00000173692	PSMD1	protein_coding	Intergenic	.	.	Alu	0.181818
1	231340170	A->G	+	ENSG00000010072	SPRTN	protein_coding	Intergenic	.	.	Alu	0.181818
2	231451297	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
1	232031027	A->G	+	ENSG00000162946	DISC1	protein_coding	Intergenic	.	.	Alu	0.5
1	232031032	A->G	+	ENSG00000162946	DISC1	protein_coding	Intergenic	.	.	Alu	0.666667
2	232726186	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.142857
2	232726204	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.272727
2	232726210	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.181818
2	232730390	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.272727
2	232730485	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.181818
2	233077539	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233077579	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233077591	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.1875
2	233077842	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.133333
2	233131433	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233131441	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.285714
2	233131442	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.214286
2	233131444	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.133333
2	233131448	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.230769
2	233131559	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233136222	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.588235
2	233136223	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.352941
2	233136277	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.411765
2	233136279	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.25
2	233136294	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.190476
2	233136352	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.333333
2	233136358	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0645161
2	233136359	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0967742
2	233136420	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0909091
2	233136439	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0833333
2	233138088	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.21875
2	233138114	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233138156	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.125
2	233138166	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.192308
2	233138203	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0769231
2	233138229	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.387097
2	233138230	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.241379
2	233138235	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.235294
2	233155367	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.111111
2	233155368	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.222222
2	233158824	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233158829	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.272727
2	233159489	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.666667
2	233159491	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0294118
2	233159538	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0652174
2	233159542	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233159543	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0909091
2	233159545	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.111111
2	233159547	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.36
2	233159563	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233159573	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.239437
2	233159603	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0307692
2	233159615	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.1
2	233159622	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.314815
2	233159628	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.204545
2	233159635	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.297872
2	233159639	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0425532
2	233159643	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.625
2	233159649	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0697674
2	233159669	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0588235
2	233172951	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.105263
2	233174544	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.153846
2	233174563	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233174567	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233174688	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.148148
2	233174724	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.15
2	233174969	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233175017	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.137931
2	233175026	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.115385
2	233175028	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0869565
2	233175098	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.107143
2	233175163	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.115385
2	233175752	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233175822	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.307692
2	233175824	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233175916	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.153846
2	233175943	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0952381
2	233175956	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.142857
2	233205130	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.1
2	233205135	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.178571
2	233205180	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233205188	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0869565
2	233205191	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.08
2	233205571	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0714286
2	233205584	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0512821
2	233213333	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.375
2	233235662	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.181818
2	233235663	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.181818
2	233235740	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.2
2	233362441	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.357143
2	233362449	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.230769
2	233362465	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.2
2	233362486	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.105263
2	233362489	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.111111
2	233362490	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.111111
2	233362531	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.111111
2	233362608	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.4
1	235145460	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.166667
1	235146126	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.05
1	235237140	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.153846
1	235237152	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.153846
1	235300848	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0487805
1	235300874	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.166667
1	235300877	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0833333
1	235300916	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.245614
1	235300943	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0731707
1	235300987	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0588235
1	235300990	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0384615
1	235301004	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.047619
1	235301128	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.166667
1	235301132	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.578947
1	235301282	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.185185
1	235301293	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.444444
1	235301294	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.192308
1	235301320	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0612245
1	235301321	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0576923
1	235301335	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0512821
1	235301358	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.119048
1	235301365	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.259259
1	235301370	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0952381
1	235301371	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0952381
1	235301381	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.05
1	235301414	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.441176
1	235301423	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.3125
1	235301430	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0555556
1	235301456	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0535714
1	235301503	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.736842
1	235301506	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.075
1	235301665	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0769231
1	235301670	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.1
1	235301682	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.12766
1	235301705	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0571429
1	235301706	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0588235
1	235301714	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.175
1	235301743	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0588235
1	235301965	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.111111
1	235303195	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.3125
1	235303196	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.352941
1	235307929	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0555556
1	235307941	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0666667
1	235307968	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.363636
1	235308250	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0740741
1	235308379	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.166667
1	235318219	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.2
1	235318261	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.117647
1	235318274	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.304348
1	235318300	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.520833
1	235318313	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0545455
1	235318340	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.097561
1	235318377	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0444444
1	235318392	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.342105
1	235318393	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0526316
1	235318759	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.411765
1	235318772	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.157895
1	235318773	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.75
1	235323133	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0869565
1	235323162	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0666667
1	235323166	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.148148
1	235323176	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0625
1	235323202	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.153846
1	235323210	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0645161
1	235323216	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0714286
1	235323243	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.1
1	235323273	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.117647
1	236263528	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.3
1	236263897	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.0689655
1	236264216	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.133333
1	236264245	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.117647
1	236264272	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.2
1	236264287	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.208333
1	236264305	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.166667
1	236264312	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.304348
1	236264336	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.0952381
1	236264341	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.368421
1	236264346	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.15
1	236264354	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.0952381
1	236264381	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.307692
1	236264652	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.3125
1	236264689	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.3
1	236797835	A->G	+	ENSG00000116984	MTR	protein_coding	Intergenic	.	.	Alu	0.2
2	237707312	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.5
2	237707326	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.230769
2	237707351	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.533333
2	237707358	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.35
2	237707429	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.0512821
2	237707437	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.0810811
2	237741667	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.117647
2	237741748	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.12
2	238184626	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.0833333
2	238184763	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.181818
2	241322344	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.2
2	241322486	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.16
2	241322528	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.1
2	241326811	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0465116
2	241326834	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0487805
2	241326927	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.115385
2	241326935	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.16129
2	241326992	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.235294
2	241326993	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0857143
2	241327812	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0571429
2	241327849	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.125
2	241327867	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0588235
2	241327891	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0606061
2	241327932	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0909091
2	241328248	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.2
2	241328249	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.176471
2	241328256	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.142857
2	241328257	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.142857
2	241328364	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.266667
2	241328377	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.142857
2	241328627	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.176471
1	243246324	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.153846
1	243246450	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.266667
1	243266875	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.166667
1	243266995	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	0.2
1	243797983	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.176471
1	243797994	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.142857
1	243797998	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.133333
1	243798011	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.357143
1	243798015	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.1875
1	243798021	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.333333
1	243798119	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.166667
1	243798128	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.235294
1	243798441	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.1875
1	244432825	A->G	-	ENSG00000035687	ADSS	protein_coding	Intergenic	.	.	Alu	0.2
1	244432829	A->G	-	ENSG00000035687	ADSS	protein_coding	Intergenic	.	.	Alu	0.363636
1	244432873	A->G	-	ENSG00000035687	ADSS	protein_coding	Intergenic	.	.	Alu	0.9
1	244663786	A->G	+	ENSG00000121644	DESI2	protein_coding	Intergenic	.	.	Alu	0.166667
1	246245260	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.125
1	246245295	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.133333
1	246245299	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.2
1	246249202	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.153846
1	246576114	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.133333
1	246911630	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.133333
1	247160230	A->G	-	ENSG00000196418	ZNF124	protein_coding	Intergenic	.	.	Alu	0.142857
16	1322647	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.117647
16	1322706	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.133333
16	1322707	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.214286
6	7219071	A->G	+	ENSG00000124782	RREB1	protein_coding	Intron	.	.	Alu	0.3
3	9987135	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0625
3	9987139	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0363636
19	11040655	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intron	.	.	Alu	0.0952381
19	11040797	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intron	.	.	Alu	0.153846
19	11449901	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.666667
19	11449931	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.133333
19	11449945	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.136364
19	11449948	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	1
19	11449949	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.421053
19	11449984	A->G	+	ENSG00000130175	PRKCSH	protein_coding	Intron	.	.	Alu	0.08
19	11850848	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.277778
19	11850910	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.272727
19	12003412	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.214286
10	12456614	A->G	+	ENSG00000252118	RNU6ATAC39P	snRNA	Intron	.	.	Alu	0.363636
8	12595276	A->G	-	ENSG00000283674	AC068587.4	processed_transcript	Intron	.	.	Alu	0.25
8	12595282	A->G	-	ENSG00000283674	AC068587.4	processed_transcript	Intron	.	.	Alu	0.461538
8	12595284	A->G	-	ENSG00000283674	AC068587.4	processed_transcript	Intron	.	.	Alu	0.25
19	12660923	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.266667
19	12660937	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.307692
19	12660938	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intron	.	.	Alu	0.272727
3	14944597	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.388889
3	14944603	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.444444
3	14944604	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.2
3	14944630	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.583333
3	14944631	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.166667
9	15505118	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intron	.	.	Alu	0.166667
9	15505133	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intron	.	.	Alu	0.333333
9	15505203	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intron	.	.	Alu	0.538462
17	16024578	A->G	-	ENSG00000011295	TTC19	protein_coding	Intron	.	.	Alu	0.230769
19	16610517	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.272727
19	16610520	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.25
19	16610524	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.166667
19	16610529	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.75
19	16640087	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intron	.	.	Alu	0.142857
19	16640114	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intron	.	.	Alu	0.133333
19	16640155	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intron	.	.	Alu	0.142857
8	17927680	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.0909091
8	17927690	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.181818
8	17927692	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.166667
8	17927811	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.0571429
17	18020799	A->G	-	ENSG00000171953	ATPAF2	protein_coding	Intron	.	.	Alu	0.266667
14	20449869	A->G	-	ENSG00000092094	OSGEP	protein_coding	Intron	.	.	Alu	0.454545
19	21452101	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.25
19	21452104	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.133333
19	21452150	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.0952381
19	21452160	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.166667
19	21452161	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.32
19	21452209	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.0952381
19	21452222	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.130435
19	21452223	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.136364
19	21452226	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.111111
16	22419335	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.133333
16	22419361	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.166667
16	22419404	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.181818
16	22419470	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.3
22	23658701	A->G	-	ENSG00000272578	AP000347.1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.166667
22	23659249	A->G	-	ENSG00000272578	AP000347.1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.181818
19	24080654	A->G	+	ENSG00000279425	AC092279.2	TEC	Intron	.	.	Alu	0.0952381
19	24080655	A->G	+	ENSG00000279425	AC092279.2	TEC	Intron	.	.	Alu	0.166667
19	24080656	A->G	+	ENSG00000279425	AC092279.2	TEC	Intron	.	.	Alu	0.222222
15	24983537	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.2
15	24983641	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.181818
15	24983646	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intron	.	.	Alu	0.727273
22	26475418	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.142857
22	26475431	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.266667
22	26475461	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.142857
22	26475490	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.272727
22	26475491	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.363636
22	26475616	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.153846
22	26475624	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.4375
22	26475625	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.466667
22	26475633	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.8125
22	26476441	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.818182
22	26476511	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.2
1	28509335	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.0994152
1	28509425	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.0327869
10	28523105	A->G	-	ENSG00000254635	WAC-AS1	antisense	Intron	.	.	Alu	0.0416667
10	28523667	A->G	-	ENSG00000254635	WAC-AS1	antisense	Intron	.	.	Alu	0.0483871
10	28523697	A->G	-	ENSG00000254635	WAC-AS1	antisense	Intron	.	.	Alu	0.03125
10	28523698	A->G	-	ENSG00000254635	WAC-AS1	antisense	Intron	.	.	Alu	0.25
17	28722429	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intron	.	.	Alu	0.230769
16	28957717	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intron	.	.	Alu	0.166667
16	28957739	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intron	.	.	Alu	0.1875
16	28957740	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intron	.	.	Alu	0.25
16	28957741	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intron	.	.	Alu	0.25
1	29173234	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.0408163
1	29173235	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.14
1	29173252	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.126761
1	29173276	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.0833333
1	29173302	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.172414
1	29173349	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.380952
1	29173350	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.190476
12	29393186	A->G	+	ENSG00000257599	OVCH1-AS1	antisense	Intron	.	.	Alu	1
13	30367687	A->G	-	ENSG00000238121	LINC00426	lincRNA	Intron	.	.	Alu	0.636364
13	30367695	A->G	-	ENSG00000238121	LINC00426	lincRNA	Intron	.	.	Alu	0.636364
16	31123679	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.142857
16	31123695	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.4
16	31123721	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.181818
16	31123746	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.133333
16	31123747	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.125
16	31123773	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.266667
16	31123774	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.571429
16	31123786	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.294118
1	32781952	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.153846
1	32781968	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.157895
1	32781978	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.368421
20	36047117	A->G	-	ENSG00000260032	NORAD	lincRNA	Intron	.	.	Alu	0.04
1	36477348	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intron	.	.	Alu	0.0833333
1	36477355	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intron	.	.	Alu	0.25
19	38844801	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.1
19	38844809	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.222222
19	38844849	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.173913
19	38844917	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.529412
5	38969801	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.5
5	38969807	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.45
5	38969862	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.133333
5	38969869	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intron	.	.	Alu	0.157895
19	39491548	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.3
19	39491565	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.25
19	39491588	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.4
19	39491591	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.266667
19	39491616	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.214286
19	39491621	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.142857
19	39491636	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.25
19	39491689	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.307692
19	39491701	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.166667
19	39492724	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.125
19	39492751	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.153846
7	40049033	A->G	+	ENSG00000065883	CDK13	protein_coding	Intron	.	.	Alu	0.181818
15	40693802	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intron	.	.	Alu	0.153846
15	41298775	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0697674
15	41298815	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0697674
15	41298816	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0465116
15	41298823	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.138889
15	41299199	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0769231
15	41299219	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.5
15	41299220	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.421053
15	41299253	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.227273
15	41302238	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.15625
15	41302240	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0909091
15	41302285	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.142857
15	41302308	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0625
15	41302323	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.178571
15	41302332	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0666667
15	41302347	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0833333
15	41302374	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.0571429
15	41302454	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.1
15	41305325	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.230769
15	41305449	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.526316
17	41984930	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.1
17	41984952	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.153846
17	42013892	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.166667
17	42014305	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.1
17	42014306	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.0909091
17	42014371	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.285714
17	42014703	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.294118
17	42014721	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.111111
17	42014753	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.133333
17	42014763	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.133333
17	42015117	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.4
17	42015122	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.5
12	42355604	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.117647
12	42355631	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.0487805
10	42516123	A->G	-	ENSG00000234420	ZNF37BP	transcribed_processed_pseudogene	Intron	.	.	Alu	0.117647
10	42516130	A->G	-	ENSG00000234420	ZNF37BP	transcribed_processed_pseudogene	Intron	.	.	Alu	0.142857
10	42516257	A->G	-	ENSG00000234420	ZNF37BP	transcribed_processed_pseudogene	Intron	.	.	Alu	0.3
3	42602905	A->G	+	ENSG00000114857	NKTR	protein_coding	Intron	.	.	Alu	0.0833333
3	42602958	A->G	+	ENSG00000114857	NKTR	protein_coding	Intron	.	.	Alu	0.153846
8	43070107	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intron	.	.	Alu	0.176471
8	43070228	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intron	.	.	Alu	0.166667
19	43661459	A->G	-	ENSG00000011422	PLAUR	protein_coding	Intron	.	.	Alu	0.166667
2	44209367	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intron	.	.	Alu	0.2
17	45218390	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.117647
17	45218399	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.166667
17	45218400	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.111111
17	45218486	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.416667
19	46710387	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intron	.	.	Alu	0.181818
17	47161744	A->G	-	ENSG00000262265	AC002558.3	sense_intronic	Intron	.	.	Alu	0.545455
17	47596073	A->G	+	ENSG00000141279	NPEPPS	protein_coding	Intron	.	.	Alu	0.130435
17	48866107	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intron	.	.	Alu	0.166667
12	48926344	A->G	-	ENSG00000272822	AC073610.3	protein_coding	Intron	.	.	Alu	0.2
14	49820112	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.125
14	49820116	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.157895
14	49820120	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.0952381
14	49820152	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.25
14	49820185	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.210526
14	49820192	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.473684
14	49820217	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.133333
14	49820239	A->G	-	ENSG00000165525	NEMF	protein_coding	Intron	.	.	Alu	0.181818
3	49962979	A->G	+	ENSG00000004534	RBM6	protein_coding	Intron	.	.	Alu	0.4375
3	49963006	A->G	+	ENSG00000004534	RBM6	protein_coding	Intron	.	.	Alu	0.111111
15	50358250	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50360599	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50360622	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.3
15	50360708	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.6
15	50360724	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50360752	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.692308
15	50360754	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50360821	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.25
15	50360830	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.285714
15	50360993	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50360995	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.222222
15	50361015	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.9
15	50361207	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
15	50367238	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.692308
15	50367252	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.272727
17	51183267	A->G	-	ENSG00000279089	AC005839.1	TEC	Intron	.	.	Alu	0.166667
17	51183273	A->G	-	ENSG00000279089	AC005839.1	TEC	Intron	.	.	Alu	0.333333
17	51183332	A->G	-	ENSG00000279089	AC005839.1	TEC	Intron	.	.	Alu	0.25
14	52721545	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.0909091
14	52721546	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.266667
14	52721615	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.0571429
14	52721822	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.333333
2	53870446	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.05
2	53870465	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.166667
2	53870502	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.111111
2	53870512	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0588235
2	53870581	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0882353
2	53870635	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0606061
2	53870868	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.117647
2	53870882	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.2
2	53870886	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.176471
2	53870887	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.1875
1	54033212	A->G	-	ENSG00000280378	AL353898.3	TEC	Intron	.	.	Alu	0.307692
4	55412131	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intron	.	.	Alu	0.5
4	55412140	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intron	.	.	Alu	0.125
18	55551040	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.3
18	55551082	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.473684
12	56312703	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intron	.	.	Alu	0.08
12	56312844	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intron	.	.	Alu	0.25
19	56379330	A->G	+	ENSG00000240225	ZNF542P	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.166667
19	56379334	A->G	+	ENSG00000240225	ZNF542P	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.636364
19	56379406	A->G	+	ENSG00000240225	ZNF542P	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.428571
18	57641575	A->G	+	ENSG00000267040	AC027097.1	antisense	Intron	.	.	Alu	0.3
14	58258333	A->G	+	ENSG00000100567	PSMA3	protein_coding	Intron	.	.	Alu	0.25
19	58582630	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.25
19	58582631	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.25
19	58582632	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.166667
19	58584082	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.266667
19	58584088	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.142857
19	58584089	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.428571
19	58584102	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.8
19	58584115	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.555556
19	58584165	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.227273
19	58584206	A->G	+	ENSG00000213753	CENPBD1P1	transcribed_processed_pseudogene	Intron	.	.	Alu	0.434783
17	64782811	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.8
17	64782862	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.333333
17	64782863	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.166667
11	65439433	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0357143
11	65439993	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0566038
11	65440001	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0757576
11	65440055	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0588235
11	65441347	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.210526
11	65441384	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.333333
11	65441385	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.047619
11	65441418	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.114286
11	65441426	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.0625
11	65441427	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.117647
17	67355342	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.0408163
17	67355343	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.08
17	67355356	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.0487805
17	67355371	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.0740741
17	67355381	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.130435
17	67956387	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.153846
17	67956447	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.272727
17	67956475	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.181818
3	71289787	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intron	.	.	Alu	0.214286
12	71774213	A->G	+	ENSG00000080371	RAB21	protein_coding	Intron	.	.	Alu	0.0714286
12	71774215	A->G	+	ENSG00000080371	RAB21	protein_coding	Intron	.	.	Alu	0.0689655
12	71774245	A->G	+	ENSG00000080371	RAB21	protein_coding	Intron	.	.	Alu	0.111111
X	73947010	A->G	+	ENSG00000225470	JPX	lincRNA	Intron	.	.	Alu	0.1
X	73947018	A->G	+	ENSG00000225470	JPX	lincRNA	Intron	.	.	Alu	0.0769231
X	74278431	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.2
X	74278444	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.2
X	74278476	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.181818
X	74278485	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.181818
X	74278491	A->G	-	ENSG00000230590	FTX	lincRNA	Intron	.	.	Alu	0.846154
7	74882628	A->G	-	ENSG00000277072	STAG3L2	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.5
6	75646756	A->G	+	ENSG00000112701	SENP6	protein_coding	Intron	.	.	Alu	0.2
11	77762096	A->G	-	ENSG00000048649	RSF1	protein_coding	Intron	.	.	Alu	0.272727
11	77762115	A->G	-	ENSG00000048649	RSF1	protein_coding	Intron	.	.	Alu	0.454545
11	77762119	A->G	-	ENSG00000048649	RSF1	protein_coding	Intron	.	.	Alu	0.181818
5	78359518	A->G	-	ENSG00000245556	SCAMP1-AS1	lincRNA	Intron	.	.	Alu	0.133333
5	78359569	A->G	-	ENSG00000245556	SCAMP1-AS1	lincRNA	Intron	.	.	Alu	0.2
16	78897044	A->G	+	ENSG00000260816	AC027279.1	sense_intronic	Intron	.	.	Alu	0.133333
16	78897176	A->G	+	ENSG00000260816	AC027279.1	sense_intronic	Intron	.	.	Alu	0.2
17	81847789	A->G	-	ENSG00000185624	P4HB	protein_coding	Intron	.	.	Alu	0.2
17	81847816	A->G	-	ENSG00000185624	P4HB	protein_coding	Intron	.	.	Alu	0.133333
4	86926037	A->G	-	ENSG00000285458	AC093827.5	protein_coding	Intron	.	.	Alu	0.2
16	89516852	A->G	+	ENSG00000197912	SPG7	protein_coding	Intron	.	.	Alu	0.4
16	89516853	A->G	+	ENSG00000197912	SPG7	protein_coding	Intron	.	.	Alu	0.181818
15	90075276	A->G	-	ENSG00000140548	ZNF710	protein_coding	Intron	.	.	Alu	0.0952381
15	90075303	A->G	-	ENSG00000140548	ZNF710	protein_coding	Intron	.	.	Alu	0.107143
15	90075318	A->G	-	ENSG00000140548	ZNF710	protein_coding	Intron	.	.	Alu	0.291667
15	90075439	A->G	-	ENSG00000140548	ZNF710	protein_coding	Intron	.	.	Alu	0.153846
1	93337979	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.212121
1	93337985	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0606061
1	93337989	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0689655
1	93338001	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.130435
1	93338016	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.125
1	93338054	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.111111
1	93338065	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.117647
12	93542624	A->G	-	ENSG00000246985	SOCS2-AS1	processed_transcript	Intron	.	.	Alu	0.0909091
12	93542625	A->G	-	ENSG00000246985	SOCS2-AS1	processed_transcript	Intron	.	.	Alu	0.136364
14	94053289	A->G	-	ENSG00000089737	DDX24	protein_coding	Intron	.	.	Alu	0.166667
14	94053348	A->G	-	ENSG00000089737	DDX24	protein_coding	Intron	.	.	Alu	0.307692
2	96281368	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intron	.	.	Alu	0.25
8	98043194	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.138889
8	98043209	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.705882
8	98043224	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0833333
8	98043264	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.352941
8	98043265	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.72549
8	98043295	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0689655
8	98043303	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0298507
8	98043307	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0298507
8	98043314	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0806452
8	98043319	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.103448
8	98043321	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0666667
X	101392900	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.153846
X	101392929	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.0952381
X	101392933	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.210526
X	101392994	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	1
X	101393003	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	1
X	101393016	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.0952381
X	101393069	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.176471
4	102810541	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.0392157
4	102810546	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.0740741
4	102810582	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.047619
4	102810583	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.238095
14	103682429	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.230769
14	103682498	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.133333
14	103682501	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.125
14	103682551	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.3
14	103682586	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.214286
14	103682604	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.357143
14	103682605	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.142857
14	103682606	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.384615
1	110379881	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intron	.	.	Alu	0.2
10	112449632	A->G	+	ENSG00000151532	VTI1A	protein_coding	Intron	.	.	Alu	0.571429
11	117159774	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intron	.	.	Alu	0.133333
11	117159796	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intron	.	.	Alu	0.227273
11	117159811	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intron	.	.	Alu	0.181818
X	119628941	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intron	.	.	Alu	0.125
12	121320637	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.142857
12	121320675	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.153846
12	121320678	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.538462
12	121320679	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.2
12	121332108	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intron	.	.	Alu	0.727273
12	122878789	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.666667
12	122883618	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.214286
12	122883624	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.363636
7	123554812	A->G	-	ENSG00000128609	NDUFA5	protein_coding	Intron	.	.	Alu	0.166667
7	128527100	A->G	-	ENSG00000273270	AC090114.2	lincRNA	Intron	.	.	Alu	0.636364
7	128527141	A->G	-	ENSG00000273270	AC090114.2	lincRNA	Intron	.	.	Alu	0.166667
9	129504142	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.214286
9	129504234	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.166667
9	129504304	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	1
9	129504345	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.153846
9	129504369	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.333333
9	129504374	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.333333
9	129504376	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.4
9	129504387	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.4
9	129505980	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.25
9	129506027	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.2
9	129506678	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.133333
9	129506681	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.166667
9	129506758	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.25
12	131897819	A->G	+	ENSG00000279283	AC131009.4	TEC	Intron	.	.	Alu	0.25
12	131897859	A->G	+	ENSG00000279283	AC131009.4	TEC	Intron	.	.	Alu	0.111111
12	132651070	A->G	-	ENSG00000177084	POLE	protein_coding	Intron	.	.	Alu	0.181818
5	132926805	A->G	-	ENSG00000072364	AFF4	protein_coding	Intron	.	.	Alu	0.0689655
9	133044025	A->G	+	ENSG00000148308	GTF3C5	protein_coding	Intron	.	.	Alu	0.363636
10	133301986	A->G	-	ENSG00000130640	TUBGCP2	protein_coding	Intron	.	.	Alu	0.454545
10	133301987	A->G	-	ENSG00000130640	TUBGCP2	protein_coding	Intron	.	.	Alu	0.727273
8	140507847	A->G	-	ENSG00000259891	AC107375.1	antisense	Intron	.	.	Alu	0.272727
5	140535795	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.047619
5	140535829	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.105263
5	140535847	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.0526316
5	150405998	A->G	-	ENSG00000019582	CD74	protein_coding	Intron	.	.	Alu	0.166667
3	150565998	A->G	-	ENSG00000144895	EIF2A	protein_coding	Intron	.	.	Alu	0.2
3	150565999	A->G	-	ENSG00000144895	EIF2A	protein_coding	Intron	.	.	Alu	0.2
4	151012973	A->G	-	ENSG00000198589	LRBA	protein_coding	Intron	.	.	Alu	0.214286
1	155312859	A->G	+	ENSG00000160752	FDPS	protein_coding	Intron	.	.	Alu	0.2
1	155670743	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.2
1	155670807	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.153846
1	155670813	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.142857
1	155670905	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.166667
1	155670930	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.272727
1	155670942	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.142857
1	155670943	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.2
1	155784580	A->G	-	ENSG00000116580	GON4L	protein_coding	Intron	.	.	Alu	0.181818
1	155784583	A->G	-	ENSG00000116580	GON4L	protein_coding	Intron	.	.	Alu	0.363636
1	155784654	A->G	-	ENSG00000116580	GON4L	protein_coding	Intron	.	.	Alu	0.2
4	158680006	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.137931
1	174016013	A->G	-	ENSG00000236535	RC3H1-IT1	sense_intronic	Intron	.	.	Alu	0.4
1	185292561	A->G	-	ENSG00000279838	AL356273.3	TEC	Intron	.	.	Alu	0.133333
1	185292590	A->G	-	ENSG00000279838	AL356273.3	TEC	Intron	.	.	Alu	0.181818
1	211358585	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.357143
1	211358586	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.214286
2	233140569	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.9
2	233140608	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.3
2	233140652	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.157895
2	233140670	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.208333
2	233140681	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0869565
2	233140725	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.461538
2	233140731	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.2
2	233140738	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.230769
2	233140808	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.538462
2	233141289	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.05
2	233141298	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.833333
2	233141311	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.229167
2	233141312	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.611111
2	233141372	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0681818
2	233141390	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0333333
2	233141415	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0377358
2	233141416	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0576923
2	233141417	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0384615
2	233141420	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0909091
2	233141447	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.172414
2	233141463	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0882353
2	233141487	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.375
2	233141488	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.151515
2	233141517	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.171429
2	233141527	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.214286
2	233205224	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.1
2	233205277	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.238095
2	233205410	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.6
X	300135	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	302703	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.272727
17	440933	A->G	-	ENSG00000183688	RFLNB	protein_coding	three_prime_utr	.	.	Alu	0.0512821
17	441982	A->G	-	ENSG00000183688	RFLNB	protein_coding	three_prime_utr	.	.	Alu	0.0666667
17	515932	A->G	-	ENSG00000141252	VPS53	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	515933	A->G	-	ENSG00000141252	VPS53	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	2322639	A->G	-	ENSG00000167720	SRR	protein_coding	three_prime_utr	.	.	Alu	0.0909091
17	2417192	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.125
17	2417201	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.1
17	2417228	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.153846
17	2417265	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.105263
17	2417277	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.285714
17	2417351	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.117647
17	2417357	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.789474
7	2434677	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.133333
7	2434960	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	2434961	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.333333
7	2434974	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.3125
7	2435034	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.416667
X	2906270	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.285714
X	2906276	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.818182
X	2906302	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.272727
X	2906344	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.636364
X	2906392	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.846154
X	2906393	A->G	-	ENSG00000006756	ARSD	protein_coding	three_prime_utr	.	.	Alu	0.846154
4	2938355	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.133333
4	2938358	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.944444
4	2938371	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.6
4	2938372	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.125
4	2938396	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.0625
4	2938398	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.258065
4	2938408	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.485714
4	2938420	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.285714
4	2938437	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.795455
4	2938538	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.37037
4	2938620	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.4375
4	2938637	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.25
4	2938638	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.1875
4	2938644	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.933333
4	2938670	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	1
4	2938686	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.0789474
4	2938687	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.216216
4	2938703	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.147059
4	2938707	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.416667
4	2938711	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.307692
4	2938735	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.916667
4	2938750	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.227273
4	2938758	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.341463
2	3545012	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.227273
2	3545017	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.107143
2	3545056	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.1
20	3824864	A->G	+	ENSG00000125843	AP5S1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
20	3869840	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.333333
20	3869848	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.2
20	3870544	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.28
20	3870545	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.304348
20	3870562	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.875
20	3870567	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.166667
20	3870574	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.147059
20	3870629	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.125
20	3870961	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.1
20	3870974	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.2
20	3870980	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.117647
20	3870981	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.166667
20	3870985	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.210526
20	3870998	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.571429
20	3871010	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.142857
20	3871020	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.388889
20	3871143	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.117647
20	3871144	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.263158
20	3873309	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.3
20	3873320	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.2
20	3873374	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.166667
20	3875295	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.111111
20	3875302	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.111111
20	3875359	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.130435
20	3926823	A->G	+	ENSG00000125779	PANK2	protein_coding	three_prime_utr	.	.	Alu	0.3
19	4653288	A->G	+	ENSG00000185361	TNFAIP8L1	protein_coding	three_prime_utr	.	.	Alu	0.2
19	4653661	A->G	+	ENSG00000185361	TNFAIP8L1	protein_coding	three_prime_utr	.	.	Alu	0.583333
19	4654423	A->G	+	ENSG00000185361	TNFAIP8L1	protein_coding	three_prime_utr	.	.	Alu	0.2
9	4710380	A->G	-	ENSG00000147853	AK3	protein_coding	three_prime_utr	.	.	Alu	0.166667
7	5389673	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.5
7	5389674	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.75
7	5389681	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.916667
7	5389692	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.25
19	6379856	A->G	-	ENSG00000125651	GTF2F1	protein_coding	three_prime_utr	.	.	Alu	0.0277778
17	8269981	A->G	+	ENSG00000178921	PFAS	protein_coding	three_prime_utr	.	.	Alu	0.230769
17	8269982	A->G	+	ENSG00000178921	PFAS	protein_coding	three_prime_utr	.	.	Alu	0.214286
11	8686293	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.307692
11	8686360	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.2
11	8686370	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.107143
11	8686414	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0540541
11	8687224	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.08
11	8687235	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.8
11	8687238	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.238095
11	8687239	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.0952381
11	8687249	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.130435
11	8687252	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.35
11	8687278	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.842105
11	8687279	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.736842
11	8687288	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.352941
11	8687295	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.133333
11	8687342	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.3
11	8687344	A->G	+	ENSG00000166441	RPL27A	protein_coding	three_prime_utr	.	.	Alu	0.571429
16	9106490	A->G	+	ENSG00000182831	C16orf72	protein_coding	three_prime_utr	.	.	Alu	0.4
16	9106548	A->G	+	ENSG00000182831	C16orf72	protein_coding	three_prime_utr	.	.	Alu	0.5
1	9267988	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.214286
1	9268010	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	9268033	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.25
1	9268043	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.3
1	9268061	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.3125
1	9268141	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.0625
1	9268154	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	9268164	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.25
1	9268183	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.6
1	9268184	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.578947
1	9271016	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.206897
1	9271035	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.391304
1	9271042	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.461538
1	9271134	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.0526316
1	9271143	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.151515
1	9271168	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	9271195	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.0571429
19	9646910	A->G	-	ENSG00000171466	ZNF562	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	9648482	A->G	-	ENSG00000171466	ZNF562	protein_coding	three_prime_utr	.	.	Alu	0.230769
3	10150958	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.3
3	10150973	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	10151010	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	10151791	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	10151827	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	10151836	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0666667
3	10151882	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.108696
3	10151919	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0416667
3	10151940	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0508475
3	10151941	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0333333
3	10151981	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0754717
3	10152048	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.128205
3	10152049	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0810811
3	10152113	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.214286
3	10152143	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.16129
3	10152182	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0943396
3	10152189	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.38
3	10152190	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0816327
3	10152192	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.148936
3	10152206	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0645161
3	10152216	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0333333
1	10457219	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	10457243	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.214286
1	10457256	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	10457295	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.6
1	10457556	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	1
1	10457925	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0909091
1	10457935	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0769231
1	10457941	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10457995	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	10458631	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.15
1	10458644	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0465116
1	10458676	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0425532
1	10458677	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0425532
1	10458699	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.25641
1	10458703	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0810811
1	10458740	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10458764	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.148148
1	10458769	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.08
1	10458774	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.25
1	10458787	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.08
1	10458788	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0769231
1	10458816	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0689655
1	10458818	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.103448
1	10458826	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0714286
1	10458919	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0833333
1	10458991	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10459007	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.307692
1	10459057	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	10459091	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.266667
1	10459817	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.3
1	10460162	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.4
1	10460176	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.363636
1	10460201	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.8
1	10460212	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.125
1	10460231	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.363636
1	10460393	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	10460411	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10460475	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.148148
1	10460592	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0909091
1	10460615	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10460626	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.173913
1	10460627	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.105263
1	10460645	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0526316
1	10460658	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.204545
1	10460678	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.128205
1	10460694	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.433333
1	10460707	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.1875
1	10460708	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	10460709	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0625
1	10460710	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0857143
1	10460729	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0588235
1	10460731	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0645161
1	10460762	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.375
1	10460801	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.142857
1	10460809	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	10461047	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.176471
1	10461073	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.272727
1	10461113	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.428571
1	10461115	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.1
1	10461143	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.416667
1	10461180	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.192308
1	10461181	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.36
1	10461203	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.1875
19	11040471	A->G	+	ENSG00000127616	SMARCA4	protein_coding	three_prime_utr	.	.	Alu	0.117647
19	11040472	A->G	+	ENSG00000127616	SMARCA4	protein_coding	three_prime_utr	.	.	Alu	0.25
19	11145950	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.235294
19	11145996	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.1
19	11146011	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.0526316
19	11146013	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.414634
19	11146026	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.047619
19	11146049	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	11449612	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.775
19	11449617	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.138889
19	11449646	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.0909091
19	11449668	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.125
19	11449669	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.0689655
19	11449718	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.16129
19	11449720	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.121212
19	11449769	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.0810811
19	11449778	A->G	+	ENSG00000130175	PRKCSH	protein_coding	three_prime_utr	.	.	Alu	0.0540541
16	11834868	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	11834879	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	11834956	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
16	11834989	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.678571
16	11834994	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.0967742
16	11835002	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.0714286
16	11835030	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.15
16	11835067	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
16	11835094	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.64
16	11835319	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.727273
16	11835320	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	11835346	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.470588
16	11835626	A->G	-	ENSG00000171490	RSL1D1	protein_coding	three_prime_utr	.	.	Alu	0.133333
8	11842699	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0625
8	11842704	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0857143
8	11842709	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.125
8	11842722	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.416667
8	11842726	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0833333
8	11842734	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0967742
8	11842742	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.222222
8	11842745	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0571429
8	11842752	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.138889
8	11842775	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.105263
8	11842796	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0645161
8	11842801	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0882353
8	11842806	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0526316
8	11842809	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.1
8	11842814	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0526316
8	11842815	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.108108
8	11842818	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.117647
8	11842854	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.166667
8	11842864	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.12
8	11842887	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.0909091
8	11842909	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.214286
8	11842910	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.285714
8	11843017	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.285714
8	11843087	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	11843117	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.117647
8	11843122	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.105263
8	11843128	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.210526
8	11843167	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.25
8	11843168	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.25
8	11843176	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.5
8	11843228	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	11843945	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	11843949	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.6
8	11844000	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.25
8	11844027	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	11914266	A->G	+	ENSG00000198429	ZNF69	protein_coding	three_prime_utr	.	.	Alu	0.3
19	11914273	A->G	+	ENSG00000198429	ZNF69	protein_coding	three_prime_utr	.	.	Alu	0.909091
10	12121033	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.0714286
10	12121034	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
10	12121044	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.0454545
10	12121100	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.0526316
10	12121127	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.1
10	12122436	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.222222
10	12122441	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.105263
10	12122570	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	12663198	A->G	-	ENSG00000103381	CPPED1	protein_coding	three_prime_utr	.	.	Alu	0.105263
19	13773209	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.416667
19	13773260	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.7
19	13773282	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.5
19	13773288	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	13773362	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.5
19	13773384	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.666667
19	13773385	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.466667
19	13773445	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.384615
19	13773511	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.214286
19	13773525	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	13773532	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.846154
19	13773594	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.727273
19	13773855	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.583333
19	13773912	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.105263
19	13773913	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	1
19	13773925	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.263158
10	14908022	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	three_prime_utr	.	.	Alu	0.0645161
10	15108325	A->G	-	ENSG00000152464	RPP38	protein_coding	three_prime_utr	.	.	Alu	0.111111
10	15108355	A->G	-	ENSG00000152464	RPP38	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	15411770	A->G	+	ENSG00000156968	MPV17L	protein_coding	three_prime_utr	.	.	Alu	0.2
16	15411772	A->G	+	ENSG00000156968	MPV17L	protein_coding	three_prime_utr	.	.	Alu	0.3
19	16551892	A->G	-	ENSG00000127526	SLC35E1	protein_coding	three_prime_utr	.	.	Alu	0.125
19	16645727	A->G	-	ENSG00000268790	AC008764.4	protein_coding	three_prime_utr	.	.	Alu	0.1875
19	16645770	A->G	-	ENSG00000268790	AC008764.4	protein_coding	three_prime_utr	.	.	Alu	0.2
22	17110224	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.133333
22	17110243	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.105263
22	17110269	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.0952381
22	17110377	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.142857
22	17110591	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.2
9	17299192	A->G	+	ENSG00000044459	CNTLN	protein_coding	three_prime_utr	.	.	Alu	0.133333
7	17345194	A->G	+	ENSG00000106546	AHR	protein_coding	three_prime_utr	.	.	Alu	0.2
19	17552990	A->G	+	ENSG00000167483	FAM129C	protein_coding	three_prime_utr	.	.	Alu	1
4	17801160	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.315789
4	17801204	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.111111
4	17801225	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.277778
4	17801226	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.105263
4	17801244	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.235294
4	17801266	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.464286
4	17801267	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.137931
4	17801306	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.214286
4	17801307	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.214286
4	17801308	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.214286
4	17801333	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.222222
4	17801356	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.4
4	17801386	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.4
4	17801394	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.111111
4	17801396	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.727273
4	17803117	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0689655
4	17803162	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0714286
4	17803179	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0588235
4	17803224	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.12
4	17803229	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.0769231
19	18367009	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.5
19	18367041	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.4
19	18367049	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.818182
19	18367105	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.4
19	18367958	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.1
19	18367966	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	18367982	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	18368012	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	18368075	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	19215808	A->G	+	ENSG00000127463	EMC1	protein_coding	three_prime_utr	.	.	Alu	0.25
1	19216117	A->G	+	ENSG00000127463	EMC1	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	19258999	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.106383
1	19259008	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.0454545
1	19259013	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.047619
1	19259025	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.0638298
1	19259059	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.103448
1	19259961	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	19259964	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.733333
1	19260007	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	1
1	19260025	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	19260026	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	1
1	19260038	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.2
13	19672219	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.3
13	19672245	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.2
13	19672262	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.466667
13	19672378	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.15
13	19672883	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.461538
13	19672884	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.166667
13	19672889	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.153846
13	19672935	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.307692
13	19672976	A->G	+	ENSG00000196199	MPHOSPH8	protein_coding	three_prime_utr	.	.	Alu	0.416667
1	20651888	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.025
1	20651958	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.047619
1	20651964	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.444444
1	20652097	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0409357
19	21119202	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.2
19	21119241	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	21119281	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	21119296	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.285714
19	21187483	A->G	+	ENSG00000196705	ZNF431	protein_coding	three_prime_utr	.	.	Alu	0.2
19	21806237	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.162791
19	21806239	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.04
19	21806242	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.163265
19	21806249	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0612245
19	21806266	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0952381
19	21806299	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0740741
19	21806358	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.172414
19	21806359	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.392857
19	21806360	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.193548
19	21806437	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.117647
19	21806438	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.1875
19	21806440	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.176471
X	23702390	A->G	-	ENSG00000123130	ACOT9	protein_coding	three_prime_utr	.	.	Alu	0.416667
X	23702391	A->G	-	ENSG00000123130	ACOT9	protein_coding	three_prime_utr	.	.	Alu	0.25
X	23702399	A->G	-	ENSG00000123130	ACOT9	protein_coding	three_prime_utr	.	.	Alu	0.333333
X	23702537	A->G	-	ENSG00000123130	ACOT9	protein_coding	three_prime_utr	.	.	Alu	0.5
19	23920511	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.307692
19	23920544	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	23920547	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	23921034	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.3
19	23921064	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	23921097	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	23921100	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	23921125	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.818182
19	23921149	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	23921185	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.6875
19	23921189	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.4
19	23921221	A->G	+	ENSG00000213967	ZNF726	protein_coding	three_prime_utr	.	.	Alu	0.2
2	24000444	A->G	+	ENSG00000173960	UBXN2A	protein_coding	three_prime_utr	.	.	Alu	0.125
2	24000448	A->G	+	ENSG00000173960	UBXN2A	protein_coding	three_prime_utr	.	.	Alu	0.117647
X	24077168	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0555556
X	24077169	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0545455
X	24077198	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.027933
X	24077208	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.104972
X	24077210	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0223464
X	24077234	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0361446
X	24077252	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0397351
X	24077266	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0372671
22	24572508	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.0645161
22	24572634	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.0689655
22	24572646	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.138889
22	24572667	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.15625
22	24572682	A->G	+	ENSG00000100028	SNRPD3	protein_coding	three_prime_utr	.	.	Alu	0.1
1	26876298	A->G	-	ENSG00000142751	GPN2	protein_coding	three_prime_utr	.	.	Alu	0.181818
17	27312844	A->G	+	ENSG00000109046	WSB1	protein_coding	three_prime_utr	.	.	Alu	0.0689655
17	27312920	A->G	+	ENSG00000109046	WSB1	protein_coding	three_prime_utr	.	.	Alu	0.0307692
17	27312930	A->G	+	ENSG00000109046	WSB1	protein_coding	three_prime_utr	.	.	Alu	0.0294118
1	28498819	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.357143
1	28498825	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.307692
1	28498858	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.5
1	28498869	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	28498884	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	28498906	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	28498907	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.214286
1	28498917	A->G	+	ENSG00000204138	PHACTR4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	28715344	A->G	+	ENSG00000162419	GMEB1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
16	28965572	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.0810811
16	28965970	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.0625
16	28965976	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.0666667
16	28966684	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.0769231
16	29665112	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0625
16	29665124	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0681818
16	29665154	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0869565
16	29665184	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0289855
16	29665185	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0882353
16	29665194	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.03125
16	29665239	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0465116
16	29665253	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0465116
16	29665256	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0384615
16	29665308	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0384615
16	29665318	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0322581
16	29666251	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.021978
16	29666252	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0337079
16	29666342	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0277778
16	29667514	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	29667522	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.294118
16	29667523	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.746269
16	29667528	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.030303
16	29667544	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.212121
16	29667545	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0588235
16	29667566	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.35
16	29667577	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.09375
16	29667595	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.342857
16	29667598	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0540541
16	29667600	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.235294
16	29667611	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.05
16	29667614	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.15
16	29667615	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0952381
16	29667616	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.190476
16	29667617	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.075
16	29667618	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0512821
16	29667620	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.047619
16	29667625	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.131579
16	29667629	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0731707
16	29667655	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125
16	29667656	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.176471
16	29667665	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0961538
16	29667669	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.14
16	29667696	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0327869
16	29667697	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0769231
16	29667708	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.027027
16	29667717	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.115942
16	29667721	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.03125
16	29667731	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29667759	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.183673
16	29667760	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1
16	29667782	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0327869
16	29667783	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0338983
16	29667785	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0322581
16	29667796	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0363636
16	29668212	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.242424
16	29668238	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.12
16	29668252	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.28
16	29668255	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.48
16	29668275	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1
16	29668290	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	29668298	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.09375
16	29668307	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.25
16	29668315	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0869565
16	29668316	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.238095
16	29668317	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.52381
16	29668318	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.409091
16	29668335	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.25
16	29668481	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29668486	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0487805
16	29668493	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0512821
16	29668501	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.30303
16	29668505	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0689655
16	29668510	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.64
16	29668526	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.181818
16	29668529	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.15
16	29668531	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.227273
16	29668539	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	29668541	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	29668565	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.419355
16	29668568	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0967742
16	29668578	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.129032
16	29668580	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.529412
16	29668588	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0645161
16	29668600	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0740741
16	29668631	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29668635	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29668637	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.466667
16	29668657	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	29668669	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0882353
16	29668670	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0588235
16	29668682	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0638298
16	29668683	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.12766
16	29668695	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0338983
16	29668699	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0754717
16	29668700	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.127273
16	29668710	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.326087
16	29668711	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125
16	29668713	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29668884	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.154762
16	29668892	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0705882
16	29668893	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.091954
16	29668913	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0235294
16	29668933	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0327869
16	29668938	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0441176
16	29668946	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.555556
16	29668947	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.114754
16	29668952	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.030303
16	29668962	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.245614
16	29668966	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.137931
16	29668970	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0350877
16	29668991	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0344828
16	29668994	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.05
16	29668996	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0862069
16	29668997	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0677966
16	29668998	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.118644
16	29669001	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.393939
16	29669005	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.134328
16	29669027	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669030	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0533333
16	29669037	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.105263
16	29669042	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.180556
16	29669045	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.210526
16	29669050	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.027027
16	29669054	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0779221
16	29669069	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.168421
16	29669073	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1
16	29669084	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.037037
16	29669096	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0825688
16	29669097	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.101852
16	29669101	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.192308
16	29669105	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0306122
16	29669128	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0361446
16	29669258	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.2
16	29669276	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.3125
16	29669279	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.588235
16	29669281	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.4375
16	29669302	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29669306	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.230769
16	29669319	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.333333
16	29669331	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.210526
16	29669341	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.619048
16	29669375	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0833333
16	29669386	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125
16	29669398	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0833333
16	29669401	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.290323
16	29669410	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.421053
16	29669411	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.947368
16	29669440	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.173077
16	29669462	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.159091
16	29669463	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.6
16	29669475	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669601	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.15942
16	29669624	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669625	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669630	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0606061
16	29669633	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0298507
16	29669647	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0540541
16	29669670	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669678	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669679	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669681	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.111111
16	29669684	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.140351
16	29669690	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0434783
16	29669703	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.025
16	29669719	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0674157
16	29669729	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.102273
16	29669755	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669756	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669765	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0952381
16	29669817	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.205882
16	29669821	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.171429
16	29669828	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0869565
16	29669831	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.415094
16	29669859	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1875
16	29669865	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0461538
16	29669866	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0819672
16	29669867	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.183333
16	29669881	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0645161
16	29669883	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0333333
16	29669885	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0655738
16	29669887	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0327869
16	29669888	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0327869
16	29669948	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0496454
16	29669959	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0714286
16	29669967	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.126984
16	29669972	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0232558
16	29669977	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0420168
16	29669982	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.387097
16	29669985	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0234375
16	29670008	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0230769
16	29670010	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0932203
16	29670018	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	29670046	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0289855
16	29670047	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0948905
16	29670050	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.328358
16	29670054	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.140741
16	29670060	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.104839
16	29670091	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0268456
16	29670098	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0381679
16	29670099	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0859375
16	29670103	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0588235
16	29670108	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0692308
16	29670123	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0804598
16	29670137	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29670139	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29670150	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0671141
16	29670153	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29670158	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0242424
16	29670168	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0266667
16	29670177	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.182482
16	29670186	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0580645
16	29670201	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0246914
16	29670232	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.17341
16	29670238	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.148571
16	29670239	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.6
16	29670244	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0549451
16	29670288	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0248447
16	29670289	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.329268
16	29670290	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0962963
16	29670305	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0277778
16	29670312	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0583333
16	29670313	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.25
16	29670324	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0534351
16	29670327	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.222222
16	29670328	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.222222
16	29670329	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.05
16	29670330	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0285714
16	29670331	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0205479
16	29670338	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0283688
16	29670342	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0381679
16	29670346	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0254237
16	29670368	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.237179
16	29670369	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.22293
16	29670374	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0487805
16	29670378	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.248485
16	29670395	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0254777
16	29670398	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0493827
16	29670410	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0247934
16	29670421	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.030303
16	29670430	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0827068
16	29670434	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0232558
16	29670439	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.109091
16	29670459	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.12
16	29670471	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0432432
16	29670477	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0326087
X	30559097	A->G	-	ENSG00000120280	CXorf21	protein_coding	three_prime_utr	.	.	Alu	0.214286
8	30678389	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.375
8	30678390	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.117647
8	30678436	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.097561
8	30678458	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0731707
8	30678463	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.526316
8	30678493	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0425532
8	30678498	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0681818
8	30678499	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.0697674
8	30678561	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.307692
8	30678634	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.272727
8	30678635	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.130435
8	30679027	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.2
8	30679066	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.1
8	30679086	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.625
8	30679089	A->G	-	ENSG00000104687	GSR	protein_coding	three_prime_utr	.	.	Alu	0.1875
6	31673010	A->G	+	ENSG00000263020	AL662899.2	protein_coding	three_prime_utr	.	.	Alu	0.7
6	31673011	A->G	+	ENSG00000263020	AL662899.2	protein_coding	three_prime_utr	.	.	Alu	0.7
6	31673016	A->G	+	ENSG00000263020	AL662899.2	protein_coding	three_prime_utr	.	.	Alu	1
18	32068964	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0952381
18	32068979	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.375
18	32068984	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.375
18	32068987	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0833333
18	32069036	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.09375
18	32069039	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.151515
18	32069041	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0588235
18	32069042	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0588235
18	32069045	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0555556
18	32069048	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0571429
18	32069049	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0625
18	32069054	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.233333
18	32069080	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.136364
18	32069081	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0952381
18	32069110	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.117647
18	32069140	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.333333
18	32069158	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.166667
18	32072002	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.166667
18	32072080	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.153846
18	32072094	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.272727
1	32231348	A->G	+	ENSG00000084623	EIF3I	protein_coding	three_prime_utr	.	.	Alu	0.027027
21	32268941	A->G	-	ENSG00000159055	MIS18A	protein_coding	three_prime_utr	.	.	Alu	0.0425532
2	32307656	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.117647
2	32307672	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	32307673	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.107143
2	32307740	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.178571
2	32307741	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	32307751	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0952381
2	32307771	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0952381
2	32307775	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0952381
2	32307780	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.136364
2	32307796	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.125
2	32307809	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.15
2	32307814	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.108108
2	32307818	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.151515
2	32308154	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.4
2	32308171	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.4
2	32308190	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.2
2	32308464	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	32308485	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.5
2	32308527	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.3125
2	32308528	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.25
2	32308549	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.1875
2	32308552	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.125
2	32308553	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.3125
2	32308558	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.1875
2	32308592	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.277778
2	32308593	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.5
2	32308610	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.176471
2	32308638	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.230769
2	32312322	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.26087
2	32312326	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.0909091
2	32312328	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.1
2	32312367	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.666667
2	32312377	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.238095
2	32312826	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	32312870	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.15
2	32315602	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.125
13	32510636	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.142857
13	32510702	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.125
1	32682561	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	32683020	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	32683022	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	32683090	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.285714
1	32683105	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.3
1	32683162	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.214286
1	32683188	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.304348
1	32683194	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	32683252	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.166667
6	33005238	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.0606061
6	33005247	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.0769231
6	33005250	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.130435
6	33005300	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.171429
6	33005309	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.115385
6	33005354	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.0571429
6	33005380	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.970588
6	33005409	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.0952381
6	33005429	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.16
6	33005440	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.666667
6	33005645	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.166667
6	33005646	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.578947
6	33005675	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.285714
6	33005742	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.130435
6	33005769	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.142857
6	33005780	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.222222
6	33005797	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.173913
6	33005798	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	33005853	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.131579
6	33005854	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.263158
6	33005862	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.0555556
3	33142711	A->G	+	ENSG00000170275	CRTAP	protein_coding	three_prime_utr	.	.	Alu	0.0208333
6	33300776	A->G	-	ENSG00000231925	TAPBP	protein_coding	three_prime_utr	.	.	Alu	0.0508475
21	33355763	A->G	+	ENSG00000142166	IFNAR1	protein_coding	three_prime_utr	.	.	Alu	0.315789
21	33355830	A->G	+	ENSG00000142166	IFNAR1	protein_coding	three_prime_utr	.	.	Alu	0.166667
21	33594697	A->G	-	ENSG00000205758	CRYZL1	protein_coding	three_prime_utr	.	.	Alu	0.166667
21	33594799	A->G	-	ENSG00000205758	CRYZL1	protein_coding	three_prime_utr	.	.	Alu	0.181818
15	34231650	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.272727
15	34231722	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.166667
15	34231728	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	1
15	34231765	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.2
19	34470652	A->G	+	ENSG00000126261	UBA2	protein_coding	three_prime_utr	.	.	Alu	0.545455
19	34470662	A->G	+	ENSG00000126261	UBA2	protein_coding	three_prime_utr	.	.	Alu	0.636364
17	35098373	A->G	-	ENSG00000267618	AC004223.3	protein_coding	three_prime_utr	.	.	Alu	0.2
6	35580667	A->G	-	ENSG00000096060	FKBP5	protein_coding	three_prime_utr	.	.	Alu	0.2
1	35599903	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.545455
1	35601199	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	35601227	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	35601289	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	35601308	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.125
1	35602148	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.208333
1	35602151	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.08
1	35602159	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.44
1	35602183	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.302326
1	35602216	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	1
1	35602220	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.127273
1	35602237	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.62069
1	35602285	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.666667
1	35602324	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.432432
1	35602565	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.171429
1	35602583	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.205128
1	35602594	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0555556
1	35602595	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.131579
1	35602609	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.53125
1	35602630	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.451613
1	35602636	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.290323
1	35602642	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	35602674	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.190476
1	35602675	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.25
1	35602677	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0952381
1	35602680	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.157895
1	35602724	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.263158
1	35602763	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.0483871
1	35602768	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.125
1	35602769	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.377049
22	35661159	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.7
22	35661201	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.272727
22	36266825	A->G	+	ENSG00000100342	APOL1	protein_coding	three_prime_utr	.	.	Alu	0.333333
22	36266826	A->G	+	ENSG00000100342	APOL1	protein_coding	three_prime_utr	.	.	Alu	0.416667
22	36266855	A->G	+	ENSG00000100342	APOL1	protein_coding	three_prime_utr	.	.	Alu	0.230769
22	36266887	A->G	+	ENSG00000100342	APOL1	protein_coding	three_prime_utr	.	.	Alu	0.25
21	36293862	A->G	+	ENSG00000142197	DOPEY2	protein_coding	three_prime_utr	.	.	Alu	0.1
21	36293883	A->G	+	ENSG00000142197	DOPEY2	protein_coding	three_prime_utr	.	.	Alu	0.111111
22	36488301	A->G	-	ENSG00000100350	FOXRED2	protein_coding	three_prime_utr	.	.	Alu	0.142857
22	36488356	A->G	-	ENSG00000100350	FOXRED2	protein_coding	three_prime_utr	.	.	Alu	0.25
22	36488379	A->G	-	ENSG00000100350	FOXRED2	protein_coding	three_prime_utr	.	.	Alu	0.117647
22	36488497	A->G	-	ENSG00000100350	FOXRED2	protein_coding	three_prime_utr	.	.	Alu	0.307692
2	37103333	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.157895
2	37103360	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.416667
2	37103471	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.428571
2	37103876	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	37103882	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.3
2	37104471	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	37104484	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.25
2	37104499	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.210526
2	37104502	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.470588
2	37104593	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	37104602	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	37104607	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.222222
2	37202383	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	37202435	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.0714286
2	37202525	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.101695
2	37202534	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.125
2	37202546	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.0322581
2	37202590	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.302326
2	37202594	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.244444
2	37202595	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.108696
2	37204342	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	37204377	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.08
2	37204378	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	37204420	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.0714286
2	37204461	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.235294
2	37204538	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.111111
17	37477732	A->G	+	ENSG00000276234	TADA2A	protein_coding	three_prime_utr	.	.	Alu	0.7
17	37477866	A->G	+	ENSG00000276234	TADA2A	protein_coding	three_prime_utr	.	.	Alu	0.3
17	37477888	A->G	+	ENSG00000276234	TADA2A	protein_coding	three_prime_utr	.	.	Alu	0.230769
17	37477910	A->G	+	ENSG00000276234	TADA2A	protein_coding	three_prime_utr	.	.	Alu	0.666667
9	37503316	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.129032
9	37503349	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.0769231
9	37503395	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.142857
9	37503457	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.047619
9	37503458	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.0444444
9	37503493	A->G	+	ENSG00000137054	POLR1E	protein_coding	three_prime_utr	.	.	Alu	0.125
17	37610252	A->G	-	ENSG00000278053	DDX52	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	37861056	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.538462
9	37864318	A->G	+	ENSG00000122741	DCAF10	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	38849507	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.125
17	38849531	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.105263
17	38849532	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	38849582	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.125
17	38849586	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.588235
17	38849615	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	38849890	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.15
17	38849961	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	38849996	A->G	-	ENSG00000125691	RPL23	protein_coding	three_prime_utr	.	.	Alu	0.166667
8	38973012	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.214286
8	38973017	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.285714
8	38973066	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	38973067	A->G	+	ENSG00000169499	PLEKHA2	protein_coding	three_prime_utr	.	.	Alu	0.214286
22	39018748	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0631579
22	39018749	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.115789
22	39018767	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.2
22	39018895	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0373832
22	39018907	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.303571
22	39018918	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0681818
22	39019867	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.466667
22	39019886	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.122449
22	39019900	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.711111
22	39019905	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.1
22	39019906	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.65
22	39020018	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0444444
22	39020030	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.283019
22	39020048	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0322581
22	39020070	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.0491803
22	39020076	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.666667
19	39490530	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.5
19	39492230	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	39492231	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.222222
19	39492238	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.1
19	39492609	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.230769
19	39492611	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	39492612	A->G	+	ENSG00000105197	TIMM50	protein_coding	three_prime_utr	.	.	Alu	0.214286
7	40069820	A->G	+	ENSG00000065883	CDK13	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	40069900	A->G	+	ENSG00000065883	CDK13	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	40070640	A->G	+	ENSG00000065883	CDK13	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	40466015	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.2
3	40466029	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.2
3	40466070	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.533333
3	40466071	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.266667
3	40466080	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.2
3	40466111	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	40466116	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.785714
3	40466136	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.785714
3	40466146	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	40466161	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.133333
3	40466425	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	40466426	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	40466431	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.266667
3	40466434	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.5
3	40466452	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.466667
3	40466470	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.111111
5	40825834	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.136364
5	40825843	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.208333
5	40827849	A->G	-	ENSG00000145592	RPL37	protein_coding	three_prime_utr	.	.	Alu	0.0769231
8	41542264	A->G	+	ENSG00000147536	GINS4	protein_coding	three_prime_utr	.	.	Alu	0.25
8	41542269	A->G	+	ENSG00000147536	GINS4	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	41542277	A->G	+	ENSG00000147536	GINS4	protein_coding	three_prime_utr	.	.	Alu	0.909091
19	41871472	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.25
19	41871481	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0769231
19	41871486	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.392857
19	41871516	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.588235
19	41871534	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.388889
19	41871544	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.190476
19	41871556	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.625
19	41871558	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.136364
19	41871559	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.318182
19	41872620	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0851064
19	41872624	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0666667
19	41872626	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.204082
19	41872634	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.394737
19	41872636	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0810811
19	41872642	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.473684
19	41872643	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.190476
19	41872774	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.5
19	41872775	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	1
19	41872804	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.109091
19	41872815	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0652174
19	41872816	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.214286
19	41872851	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.172414
19	41872861	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0689655
6	42057678	A->G	+	ENSG00000137413	TAF8	protein_coding	three_prime_utr	.	.	Alu	0.153846
6	42080610	A->G	+	ENSG00000137413	TAF8	protein_coding	three_prime_utr	.	.	Alu	0.3
6	42080623	A->G	+	ENSG00000137413	TAF8	protein_coding	three_prime_utr	.	.	Alu	0.3
6	42207359	A->G	-	ENSG00000048544	MRPS10	protein_coding	three_prime_utr	.	.	Alu	0.0714286
22	42511255	A->G	-	ENSG00000172250	SERHL	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.181818
15	42567388	A->G	+	ENSG00000137814	HAUS2	protein_coding	three_prime_utr	.	.	Alu	0.2
15	42569541	A->G	+	ENSG00000137814	HAUS2	protein_coding	three_prime_utr	.	.	Alu	0.142857
6	42886943	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
6	42888216	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.384615
6	42888224	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.5
6	42888241	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.307692
6	42888269	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.272727
6	42888291	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.714286
6	42888362	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.285714
6	42888367	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.307692
6	42888372	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.909091
6	42888378	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.75
6	42888438	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.714286
6	42889167	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
6	42889179	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.75
6	42889185	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.1
6	42889186	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0967742
6	42889199	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.107143
6	42889240	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.114286
6	42889245	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.25
6	42889290	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
6	42889293	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.441176
6	42889319	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0909091
6	42889320	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0588235
6	42889329	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.0555556
6	42889373	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.172414
6	42889398	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.166667
8	43020671	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3
8	43020837	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3125
8	43020843	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3125
8	43020845	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.1875
8	43020846	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3125
8	43020872	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	43020891	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.294118
8	43020905	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.222222
8	43020915	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.333333
8	43020925	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.105263
8	43020948	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.08
8	43020955	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.315789
8	43020959	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.15
8	43021008	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.1
8	43021014	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.272727
8	43021023	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.117647
17	43219689	A->G	+	ENSG00000184988	TMEM106A	protein_coding	three_prime_utr	.	.	Alu	0.2
22	44171401	A->G	+	ENSG00000188677	PARVB	protein_coding	three_prime_utr	.	.	Alu	0.333333
7	44578744	A->G	-	ENSG00000158604	TMED4	protein_coding	three_prime_utr	.	.	Alu	0.1
7	44578754	A->G	-	ENSG00000158604	TMED4	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	44749132	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	44749144	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.421053
3	44749145	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	44749265	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.142857
3	44749267	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.428571
3	44749281	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	44749289	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.5
3	44749367	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.8
3	44749385	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	44749387	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.25
3	44749905	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.5
3	44749906	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.5
3	44749914	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.3
3	44749944	A->G	-	ENSG00000163807	KIAA1143	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	44801890	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.916667
7	44801912	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.0882353
7	44801920	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.2
7	44801990	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.116279
7	44802249	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.368421
7	44802329	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.535714
7	44802332	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.363636
7	44802423	A->G	+	ENSG00000196262	PPIA	protein_coding	three_prime_utr	.	.	Alu	0.0757576
7	44834986	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.0571429
7	44834987	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.0555556
7	44835063	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.184211
20	45079130	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.4375
20	45079135	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.625
20	45079144	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.230769
20	45079161	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.153846
20	45079198	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.166667
20	45079201	A->G	+	ENSG00000101109	STK4	protein_coding	three_prime_utr	.	.	Alu	0.363636
13	45334031	A->G	-	ENSG00000133112	TPT1	protein_coding	three_prime_utr	.	.	Alu	0.133333
12	45954852	A->G	-	ENSG00000139218	SCAF11	protein_coding	three_prime_utr	.	.	Alu	0.0555556
11	46677677	A->G	-	ENSG00000175220	ARHGAP1	protein_coding	three_prime_utr	.	.	Alu	1
8	47977073	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0381679
8	47977099	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0229008
8	47977112	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0625
8	47977549	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.321739
8	47977554	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0588235
8	47977687	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0813953
8	47977728	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0242424
16	48353264	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.363636
16	48353439	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.137931
16	48353444	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.0740741
16	48354481	A->G	-	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	48453617	A->G	+	ENSG00000105447	GRWD1	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	48749558	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.636364
3	48749578	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.105263
3	48749609	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.105263
3	48749618	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.157895
3	48749619	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.105263
3	48750129	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.1875
3	48750147	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	48750200	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	48750201	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	48750207	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	48750241	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.333333
3	48750251	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.565217
3	48750262	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.208333
3	48750282	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.130435
3	48750300	A->G	-	ENSG00000114302	PRKAR2A	protein_coding	three_prime_utr	.	.	Alu	0.294118
14	50325958	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.4
14	50326005	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.454545
14	50326070	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.227273
14	50326071	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0952381
14	50326073	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.1
14	50326083	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.15
14	50326119	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.125
14	50326179	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.0689655
14	50326213	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	1
14	50326231	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	1
14	50326961	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.166667
14	50326985	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.35
14	50327317	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.2
14	50327535	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.636364
14	50327540	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.142857
14	50327590	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.181818
14	50327604	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.916667
14	50327606	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.153846
14	50327630	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.25
12	50930530	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.117647
12	50930653	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.26087
12	50930683	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.125
12	50930684	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.411765
12	50930713	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.3125
12	50930723	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.25
12	50930762	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	50930844	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.407407
12	50930856	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.291667
12	50931446	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0967742
12	50931454	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.212121
12	50931455	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	50931497	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.382353
12	50931504	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.151515
12	50931506	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0625
12	50931523	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.35
12	50931564	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	50931568	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.1
12	50931591	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0666667
12	50931596	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.129032
12	50931636	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.131579
12	50931652	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.105263
12	50931657	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.305556
12	50931700	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.1
12	50931754	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.35
17	51191612	A->G	-	ENSG00000011258	MBTD1	protein_coding	three_prime_utr	.	.	Alu	0.2
13	51444356	A->G	-	ENSG00000102786	INTS6	protein_coding	three_prime_utr	.	.	Alu	0.166667
13	51444378	A->G	-	ENSG00000102786	INTS6	protein_coding	three_prime_utr	.	.	Alu	0.166667
13	51444384	A->G	-	ENSG00000102786	INTS6	protein_coding	three_prime_utr	.	.	Alu	0.166667
15	51913757	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.153846
15	51913775	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.25
15	51913892	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.5
15	51913938	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.333333
15	51914393	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.545455
15	51914409	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.583333
15	51914410	A->G	+	ENSG00000138594	TMOD3	protein_coding	three_prime_utr	.	.	Alu	0.75
14	52775636	A->G	-	ENSG00000100522	GNPNAT1	protein_coding	three_prime_utr	.	.	Alu	0.333333
14	52775707	A->G	-	ENSG00000100522	GNPNAT1	protein_coding	three_prime_utr	.	.	Alu	0.181818
14	52775760	A->G	-	ENSG00000100522	GNPNAT1	protein_coding	three_prime_utr	.	.	Alu	0.642857
14	52775770	A->G	-	ENSG00000100522	GNPNAT1	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	52825748	A->G	+	ENSG00000162378	ZYG11B	protein_coding	three_prime_utr	.	.	Alu	0.454545
1	52825753	A->G	+	ENSG00000162378	ZYG11B	protein_coding	three_prime_utr	.	.	Alu	0.363636
19	52839063	A->G	-	ENSG00000204604	ZNF468	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	53494817	A->G	+	ENSG00000198346	ZNF813	protein_coding	three_prime_utr	.	.	Alu	0.5
19	53494822	A->G	+	ENSG00000198346	ZNF813	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	53875794	A->G	+	ENSG00000179820	MYADM	protein_coding	three_prime_utr	.	.	Alu	0.0538462
19	53875799	A->G	+	ENSG00000179820	MYADM	protein_coding	three_prime_utr	.	.	Alu	0.0630631
19	53875800	A->G	+	ENSG00000179820	MYADM	protein_coding	three_prime_utr	.	.	Alu	0.0265487
X	54560763	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.69697
X	54560777	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0645161
X	54560785	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0740741
X	54560786	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.37037
X	54560816	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.333333
X	54560821	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	54560857	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.2
X	54560863	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.166667
X	54560864	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.1875
X	54560865	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.529412
X	54560907	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.4
X	54560917	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.652174
X	54560919	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.681818
X	54560920	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.772727
X	54560929	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0869565
X	54560946	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.12
X	54560960	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.142857
X	54560978	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.4
X	54560992	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.744186
X	54560993	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.261905
X	54561004	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0714286
X	54561022	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0425532
X	54561024	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0612245
X	54561032	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.115385
4	55960647	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.0909091
4	55960669	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.12
4	55960670	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.0909091
4	55960678	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.08
4	55960715	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.117647
4	55960738	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.193548
4	55960739	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.125
4	55960747	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.206897
8	56067429	A->G	-	ENSG00000008988	RPS20	protein_coding	three_prime_utr	.	.	Alu	0.4
8	56067441	A->G	-	ENSG00000008988	RPS20	protein_coding	three_prime_utr	.	.	Alu	0.416667
8	56067442	A->G	-	ENSG00000008988	RPS20	protein_coding	three_prime_utr	.	.	Alu	0.333333
12	56229627	A->G	+	ENSG00000139579	NABP2	protein_coding	three_prime_utr	.	.	Alu	0.0294118
12	56229686	A->G	+	ENSG00000139579	NABP2	protein_coding	three_prime_utr	.	.	Alu	0.0666667
4	56459960	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.333333
4	56459965	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.16129
4	56459993	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0571429
4	56460070	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0344828
4	56460096	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.19403
4	56460125	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.68254
4	56460126	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0727273
4	56460139	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0327869
4	56460147	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.24
4	56460149	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.208333
4	56460155	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0535714
4	56460163	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0816327
4	56460167	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0943396
4	56460707	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0480769
4	56460709	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.411215
4	56460713	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.321101
4	56460794	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.113924
4	56460851	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.313953
4	56460856	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0526316
4	56460891	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0571429
4	56460892	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.197183
4	56460912	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.119048
4	56460916	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.382353
4	56460921	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	1
4	56460926	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.05
4	56460931	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0865385
4	56460942	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0366972
4	56460950	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0363636
4	56460971	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0240964
4	56460986	A->G	+	ENSG00000128050	PAICS	protein_coding	three_prime_utr	.	.	Alu	0.0212766
3	57897585	A->G	+	ENSG00000163681	SLMAP	protein_coding	three_prime_utr	.	.	Alu	0.2
3	58318472	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	58318551	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0689655
3	58318611	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0740741
3	58318651	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0714286
3	58318744	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0645161
3	58318745	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0645161
3	58318813	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0909091
3	58318814	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.0952381
3	58318878	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.125
3	58318879	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.1875
17	59203477	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.62069
17	59203485	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.153846
17	59203486	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.307692
17	59203487	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.192308
17	59203494	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0740741
17	59203499	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.259259
17	59203604	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0625
17	59203626	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0869565
17	59203649	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.136364
17	59203660	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.266667
17	59203673	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	59203694	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	1
17	59203697	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.363636
17	59203698	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.4
17	59203699	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.181818
17	59203711	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.363636
17	59203715	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.384615
17	59203752	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0714286
17	59203753	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.08
17	59203764	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.333333
17	59204139	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0357143
17	59204152	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0727273
17	59204275	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0277778
17	59204328	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0434783
17	59204583	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0344828
2	60929893	A->G	+	ENSG00000162924	REL	protein_coding	three_prime_utr	.	.	Alu	0.0344828
17	64322886	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.166667
17	64322887	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.0980392
17	64322894	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.0350877
17	64322944	A->G	-	ENSG00000261371	PECAM1	protein_coding	three_prime_utr	.	.	Alu	0.0689655
15	64364811	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0769231
15	64364824	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0526316
15	64364825	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0350877
15	64364948	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0666667
15	64365091	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0909091
15	64365331	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0930233
15	64365340	A->G	-	ENSG00000166803	PCLAF	protein_coding	three_prime_utr	.	.	Alu	0.0465116
12	64450354	A->G	+	ENSG00000184575	XPOT	protein_coding	three_prime_utr	.	.	Alu	0.909091
12	64450369	A->G	+	ENSG00000184575	XPOT	protein_coding	three_prime_utr	.	.	Alu	0.833333
12	64450419	A->G	+	ENSG00000184575	XPOT	protein_coding	three_prime_utr	.	.	Alu	0.333333
17	64468347	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.769231
17	64468389	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.142857
17	64468399	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.2
17	64468418	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.111111
17	64468455	A->G	+	ENSG00000271605	MILR1	protein_coding	three_prime_utr	.	.	Alu	0.153846
15	65659467	A->G	-	ENSG00000074621	SLC24A1	protein_coding	three_prime_utr	.	.	Alu	0.0350877
15	65659472	A->G	-	ENSG00000074621	SLC24A1	protein_coding	three_prime_utr	.	.	Alu	0.0666667
11	65775963	A->G	-	ENSG00000254470	AP5B1	protein_coding	three_prime_utr	.	.	Alu	0.181818
11	65776002	A->G	-	ENSG00000254470	AP5B1	protein_coding	three_prime_utr	.	.	Alu	0.153846
7	66153873	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.0833333
7	66153875	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.130435
7	66153883	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.277778
7	66153900	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.105263
7	66153973	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	66154256	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	66154305	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.45
7	66154379	A->G	+	ENSG00000241258	CRCP	protein_coding	three_prime_utr	.	.	Alu	0.142857
15	66333542	A->G	+	ENSG00000166938	DIS3L	protein_coding	three_prime_utr	.	.	Alu	0.1
15	66333654	A->G	+	ENSG00000166938	DIS3L	protein_coding	three_prime_utr	.	.	Alu	0.0833333
15	66333658	A->G	+	ENSG00000166938	DIS3L	protein_coding	three_prime_utr	.	.	Alu	0.0588235
11	66520854	A->G	-	ENSG00000256349	AP002748.4	protein_coding	three_prime_utr	.	.	Alu	0.2
11	66649806	A->G	+	ENSG00000173933	RBM4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	67409006	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.941176
1	67409013	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.315789
1	67409014	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.666667
1	67409048	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.714286
1	67409142	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.176471
1	67409166	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	67409176	A->G	-	ENSG00000142864	SERBP1	protein_coding	three_prime_utr	.	.	Alu	0.714286
2	68131048	A->G	-	ENSG00000243667	WDR92	protein_coding	three_prime_utr	.	.	Alu	0.125
11	68755439	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0886076
11	68755482	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.210526
11	68755538	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0952381
11	68755579	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0224719
11	68755588	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0240964
11	68755590	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0246914
11	68755593	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0617284
11	68755604	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.147059
11	68755605	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0298507
11	68755606	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0422535
11	68755612	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.180328
11	68755614	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.111111
11	68755660	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.047619
11	68755681	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0531915
11	68755869	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.263158
11	68755879	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0882353
11	68755888	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0909091
11	68755929	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.333333
11	68755931	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.2
11	68755965	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.15625
11	68755966	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.393939
11	68756000	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.636364
11	68756004	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.578947
11	68756029	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.3
12	68767410	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.363636
12	68767437	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	68767472	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.153846
12	68768168	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.1
12	68768169	A->G	+	ENSG00000175782	SLC35E3	protein_coding	three_prime_utr	.	.	Alu	0.0952381
5	69210139	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0224719
5	69210140	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0537634
5	69210267	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0416667
16	69327305	A->G	-	ENSG00000213380	COG8	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	69327316	A->G	-	ENSG00000213380	COG8	protein_coding	three_prime_utr	.	.	Alu	0.333333
16	69327336	A->G	-	ENSG00000213380	COG8	protein_coding	three_prime_utr	.	.	Alu	0.181818
16	69327350	A->G	-	ENSG00000213380	COG8	protein_coding	three_prime_utr	.	.	Alu	0.166667
10	70149734	A->G	-	ENSG00000079332	SAR1A	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	70248674	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.454545
16	70248723	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.416667
16	70248816	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	70373023	A->G	+	ENSG00000168872	DDX19A	protein_coding	three_prime_utr	.	.	Alu	0.107143
6	70589220	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.25
6	70589226	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.833333
6	70589265	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.75
6	70589266	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.846154
6	70589270	A->G	+	ENSG00000154079	SDHAF4	protein_coding	three_prime_utr	.	.	Alu	0.266667
10	72234879	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.133333
10	72234931	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.153846
10	72234934	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.307692
10	72234941	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.117647
10	72234949	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.3
10	72234955	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.318182
10	72235004	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.533333
10	72235031	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.105263
10	72235044	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.142857
10	72235332	A->G	+	ENSG00000166295	ANAPC16	protein_coding	three_prime_utr	.	.	Alu	0.272727
11	72286142	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.181818
11	72286143	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.181818
11	72287555	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.2
11	72287559	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.2
11	72289708	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.176471
11	72289709	A->G	-	ENSG00000162129	CLPB	protein_coding	three_prime_utr	.	.	Alu	0.176471
10	73249034	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0833333
10	73249039	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0263158
10	73249057	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0869565
10	73249059	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.227273
10	73249083	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.13
10	73249089	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0265487
10	73249097	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0222222
10	73249098	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0375
10	73249118	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.197802
10	73249120	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0337079
10	73249135	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0240964
10	73249197	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.47619
10	73249827	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.4
10	73249833	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.136364
10	73249834	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.157895
10	73249962	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.214286
10	73249963	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.214286
10	73250023	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.107143
10	73250060	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0689655
10	73250086	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.171429
14	73697622	A->G	+	ENSG00000119661	DNAL1	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	74231817	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0632911
7	74231818	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0253165
7	74231856	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0240964
7	74231857	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.025
7	74231859	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0266667
7	74231883	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.027027
7	74231884	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0405405
16	74621898	A->G	-	ENSG00000168411	RFWD3	protein_coding	three_prime_utr	.	.	Alu	0.097561
16	74622404	A->G	-	ENSG00000168411	RFWD3	protein_coding	three_prime_utr	.	.	Alu	0.08
14	74735669	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.333333
14	74735674	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.117647
14	74735687	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.214286
14	74735699	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.692308
14	74735709	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.533333
14	74735736	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.153846
14	74735841	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.125
14	74736153	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.1
14	74736154	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.08
14	74736249	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
14	74736261	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.111111
14	74736291	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.5
14	74736292	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.263158
14	74736297	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.153846
14	74736301	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.866667
14	74736364	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.6
12	75496033	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.153846
12	75496034	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.214286
12	75496100	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.5
12	75496101	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.8
12	75496115	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.25
12	75496132	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.25
12	75496272	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.822222
12	75496273	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.209302
12	75496309	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.0714286
12	75496311	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.148148
12	75496341	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.409091
16	75599193	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	75599219	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.0882353
16	75599264	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.08
16	75599337	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.142857
17	75889152	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.133333
17	75889153	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.133333
17	75889167	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.142857
17	75889326	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.130435
15	75937388	A->G	+	ENSG00000167196	FBXO22	protein_coding	three_prime_utr	.	.	Alu	0.538462
15	75937398	A->G	+	ENSG00000167196	FBXO22	protein_coding	three_prime_utr	.	.	Alu	0.181818
11	77023810	A->G	+	ENSG00000078124	ACER3	protein_coding	three_prime_utr	.	.	Alu	0.166667
11	77023818	A->G	+	ENSG00000078124	ACER3	protein_coding	three_prime_utr	.	.	Alu	0.3
11	77023819	A->G	+	ENSG00000078124	ACER3	protein_coding	three_prime_utr	.	.	Alu	0.4
X	77827502	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0754717
X	77827509	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0677966
X	77827510	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.206897
X	77827514	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0333333
X	77827534	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.030303
X	77827544	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.145455
X	77827621	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0322581
X	77827635	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0363636
X	77827704	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0357143
X	77827712	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0338983
X	77827729	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.037037
X	77828120	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.210526
X	77828162	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0869565
X	77828176	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.2
X	77828226	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.133333
X	77828331	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.142857
11	78069027	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.142857
11	78069065	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.2
11	78069071	A->G	-	ENSG00000259112	NDUFC2-KCTD14	protein_coding	three_prime_utr	.	.	Alu	0.818182
9	78275350	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.272727
9	78275840	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.166667
9	78275850	A->G	+	ENSG00000148019	CEP78	protein_coding	three_prime_utr	.	.	Alu	0.2
5	80626986	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.025641
5	80627470	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.0571429
5	80627474	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.0571429
5	80627510	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.228571
5	80627513	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.0526316
5	80627515	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.075
5	80627542	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.142857
5	80627549	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.0882353
5	80627559	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.178571
5	80627583	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.142857
5	80628007	A->G	-	ENSG00000228716	DHFR	protein_coding	three_prime_utr	.	.	Alu	0.461538
15	83005409	A->G	-	ENSG00000169609	C15orf40	protein_coding	three_prime_utr	.	.	Alu	0.25
15	83005573	A->G	-	ENSG00000169609	C15orf40	protein_coding	three_prime_utr	.	.	Alu	0.105263
6	83966544	A->G	+	ENSG00000065615	CYB5R4	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	85319283	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0217391
2	85319303	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0217391
2	85319328	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0215054
2	85319334	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.115385
2	85319351	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0821918
2	85319394	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.05
2	85319396	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0454545
2	85610227	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	85610231	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.384615
2	85610232	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.692308
2	85610702	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.125
2	85610721	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	89182620	A->G	-	ENSG00000162654	GBP4	protein_coding	three_prime_utr	.	.	Alu	0.238095
16	89532898	A->G	+	ENSG00000197912	SPG7	protein_coding	three_prime_utr	.	.	Alu	0.2
16	89563498	A->G	+	ENSG00000167526	RPL13	protein_coding	three_prime_utr	.	.	Alu	0.214286
16	89563618	A->G	+	ENSG00000167526	RPL13	protein_coding	three_prime_utr	.	.	Alu	0.25
15	90083209	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0512821
15	90083229	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0888889
15	90083230	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0769231
15	90083239	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.025974
15	90083240	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.025641
15	90083293	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.025974
15	90083308	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0357143
15	90083405	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0526316
15	90083406	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0892857
15	90083408	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0363636
15	90083422	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0491803
7	92457277	A->G	+	ENSG00000157259	GATAD1	protein_coding	three_prime_utr	.	.	Alu	0.0689655
7	92457305	A->G	+	ENSG00000157259	GATAD1	protein_coding	three_prime_utr	.	.	Alu	0.0833333
7	92457317	A->G	+	ENSG00000157259	GATAD1	protein_coding	three_prime_utr	.	.	Alu	0.1
5	96917827	A->G	+	ENSG00000164308	ERAP2	protein_coding	three_prime_utr	.	.	Alu	0.025974
8	97726819	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.190476
8	97726820	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.2
8	97726929	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0714286
8	97726980	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0784314
8	97726981	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.0588235
8	97727245	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.047619
8	97727366	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.03125
8	97728667	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.157895
8	97728672	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.111111
8	97728688	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.363636
8	97728689	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	98548843	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.26087
12	98549041	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.0571429
12	98549046	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.405405
12	98549069	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.0714286
12	98549107	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.875
12	98549108	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	98549233	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.1
12	98549255	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	1
12	98549305	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.0540541
12	98549318	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.578947
12	98549324	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.375
12	98549325	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.227273
12	98549404	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.075
12	98549423	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.097561
12	98549424	A->G	+	ENSG00000120802	TMPO	protein_coding	three_prime_utr	.	.	Alu	0.0769231
2	99196488	A->G	+	ENSG00000185414	MRPL30	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	99196515	A->G	+	ENSG00000185414	MRPL30	protein_coding	three_prime_utr	.	.	Alu	0.2
1	100024436	A->G	+	ENSG00000117620	SLC35A3	protein_coding	three_prime_utr	.	.	Alu	0.3
10	100232550	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.714286
10	100232551	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	1
10	100232557	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.333333
10	100233026	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.266667
10	100233036	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.333333
10	100233053	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.307692
X	101009570	A->G	-	ENSG00000188917	TRMT2B	protein_coding	three_prime_utr	.	.	Alu	0.153846
7	101091472	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.0869565
7	101091477	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.285714
7	101091511	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.125
7	101091517	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.318182
7	101091531	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	1
7	101091569	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.1
7	101091571	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.15
7	101091573	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.25
7	101091593	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.733333
7	101091606	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.105263
7	101091607	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.631579
7	101091612	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.2
7	101093709	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.185185
7	101093710	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.192308
3	101823970	A->G	+	ENSG00000144815	NXPE3	protein_coding	three_prime_utr	.	.	Alu	0.142857
14	102036976	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.2
14	102037170	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.0833333
14	102037222	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.333333
14	102037271	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.133333
14	102037326	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.117647
7	102448761	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.136364
7	102449314	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0645161
7	102449382	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0952381
7	102449560	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0434783
7	102449568	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.075
7	102449648	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0909091
7	102449732	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0689655
7	102449750	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0666667
7	102449758	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.108108
7	102449860	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0961538
7	102450004	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.126984
7	102450075	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0491803
7	102450937	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.1
7	102450945	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0588235
7	102450946	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0540541
7	102450991	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.047619
7	102451036	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0714286
7	102451064	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0652174
7	102451080	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.25
7	102451081	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.180328
7	102451122	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.103448
7	103335606	A->G	-	ENSG00000105821	DNAJC2	protein_coding	three_prime_utr	.	.	Alu	0.133333
14	103592053	A->G	+	ENSG00000256053	APOPT1	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	106325631	A->G	+	ENSG00000166046	TCP11L2	protein_coding	three_prime_utr	.	.	Alu	0.142857
6	106666052	A->G	+	ENSG00000130348	QRSL1	protein_coding	three_prime_utr	.	.	Alu	0.0769231
11	108365908	A->G	+	ENSG00000149311	ATM	protein_coding	three_prime_utr	.	.	Alu	0.230769
11	108365909	A->G	+	ENSG00000149311	ATM	protein_coding	three_prime_utr	.	.	Alu	0.307692
4	109689043	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.08
4	109689072	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.1
4	109689073	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.0769231
4	109689108	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.0714286
4	109689113	A->G	-	ENSG00000138794	CASP6	protein_coding	three_prime_utr	.	.	Alu	0.0487805
4	119297539	A->G	-	ENSG00000164096	C4orf3	protein_coding	three_prime_utr	.	.	Alu	0.0266667
X	119538562	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.545455
X	119538598	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.416667
X	119538610	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	119538615	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.272727
X	119538663	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.4
X	119538678	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.333333
X	119538708	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.263158
X	119538709	A->G	-	ENSG00000018610	CXorf56	protein_coding	three_prime_utr	.	.	Alu	0.444444
X	120437994	A->G	-	ENSG00000005893	LAMP2	protein_coding	three_prime_utr	.	.	Alu	0.12
12	122144766	A->G	+	ENSG00000175727	MLXIP	protein_coding	three_prime_utr	.	.	Alu	0.0212766
12	123411625	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.157895
12	123411655	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.142857
12	123411682	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.2
12	123661530	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0645161
12	123661548	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.387097
12	123661590	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0666667
12	123661702	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0512821
12	123661766	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.05
12	123661768	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.1
12	123661824	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.0571429
12	123661849	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.189189
12	123661870	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.117647
12	123662050	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.391304
12	123662121	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.09375
X	123910615	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.272727
X	123910682	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.125
X	123912479	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.142857
X	123912488	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	1
X	123912567	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.25
X	123912590	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.583333
X	123913015	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.2
X	123913262	A->G	+	ENSG00000101966	XIAP	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	125029417	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.0714286
11	125656230	A->G	+	ENSG00000149554	CHEK1	protein_coding	three_prime_utr	.	.	Alu	0.214286
11	125675961	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.428571
11	125675988	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.09375
11	125676007	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.0625
11	125676008	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.121212
11	125676025	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.0689655
11	125676033	A->G	+	ENSG00000134940	ACRV1	protein_coding	three_prime_utr	.	.	Alu	0.1
5	126625518	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.272727
5	126625531	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.153846
5	126625554	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.307692
5	126625755	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.272727
5	126625771	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.2
5	126625776	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.3
5	126625781	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.153846
5	126625795	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.25
5	126625856	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.181818
5	126625862	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.25
5	126625956	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.2
5	126625957	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.214286
5	126625975	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.214286
5	126626338	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.4
5	126626387	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.166667
5	126626393	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.181818
5	126626477	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.235294
5	126626483	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.333333
5	126626616	A->G	+	ENSG00000164902	PHAX	protein_coding	three_prime_utr	.	.	Alu	0.222222
2	127843864	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	127843890	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	127843982	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	127845576	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.545455
2	127845578	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	127845582	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	127845621	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.181818
4	128036972	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.2
4	128037165	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.333333
4	128037599	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.6
4	128037600	A->G	+	ENSG00000164074	ABHD18	protein_coding	three_prime_utr	.	.	Alu	0.636364
2	128192901	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.0697674
2	128192917	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.393939
2	128192923	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.918919
2	128192924	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.611111
2	128192941	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.151515
2	128192967	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	128192968	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.642857
2	128192974	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.307692
2	128192991	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	128193316	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.285714
2	128193345	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	128193352	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.230769
2	128193356	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	128193369	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.181818
2	128193381	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.923077
2	128193391	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.4
2	128193452	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.473684
2	128193465	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.09375
2	128193471	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.0857143
2	128193476	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.0465116
2	128193506	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	1
2	128193519	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.05
2	128193520	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.15
2	128193521	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.325
2	128193533	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.571429
2	128193549	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.125
2	128195103	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.117647
9	128309254	A->G	-	ENSG00000167112	TRUB2	protein_coding	three_prime_utr	.	.	Alu	0.166667
7	128502779	A->G	+	ENSG00000165055	METTL2B	protein_coding	three_prime_utr	.	.	Alu	0.3
3	129129512	A->G	-	ENSG00000240682	ISY1	protein_coding	three_prime_utr	.	.	Alu	0.0412371
5	131201061	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.352941
5	131201062	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.333333
5	131201104	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.117647
5	131201137	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.105263
5	131201149	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.142857
5	131201155	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.117647
5	131201193	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.25
5	131201199	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.12
5	131201453	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.388889
5	131201461	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.277778
5	131201462	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.444444
5	131201488	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.4
5	131201560	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.454545
5	131201588	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.214286
5	131201598	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.117647
5	131201599	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.941176
5	131201604	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.117647
5	131201664	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	132721318	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.75
12	132721348	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.162162
12	132721370	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.512821
12	132721375	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0769231
12	132721388	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.151515
12	132721439	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0540541
12	132721448	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0909091
12	132721509	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.25
12	132721535	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.333333
12	132721668	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.166667
12	132721669	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.277778
12	132721753	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.777778
12	132721754	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.277778
12	132721763	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.444444
12	132721831	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.4
12	132721837	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.608696
12	132722416	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.0769231
12	132722472	A->G	+	ENSG00000247077	PGAM5	protein_coding	three_prime_utr	.	.	Alu	0.32
5	134152638	A->G	-	ENSG00000113558	SKP1	protein_coding	three_prime_utr	.	.	Alu	0.4
8	140516332	A->G	+	ENSG00000104472	CHRAC1	protein_coding	three_prime_utr	.	.	Alu	0.0333333
3	141947001	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.2
3	141947445	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0540541
3	141947483	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.1
3	141947507	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	141947547	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	141947553	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.347826
3	141947579	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0740741
3	141947583	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0714286
3	141947585	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.107143
3	141947588	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.346154
3	141949870	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	141949872	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.157895
3	141949877	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.411765
3	141949878	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.555556
3	141949905	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	141949916	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.277778
3	141949931	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.263158
3	141949932	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.210526
3	141949978	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.142857
3	141949986	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	1
3	141949989	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	1
3	141950000	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	141950001	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0869565
3	141950023	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	141950025	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.15
3	141950026	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.526316
3	141950034	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.428571
3	141950039	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.35
3	141950079	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.185185
3	141950080	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.5
3	141950096	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.848485
1	145745370	A->G	-	ENSG00000265491	RNF115	protein_coding	three_prime_utr	.	.	Alu	0.363636
1	145745384	A->G	-	ENSG00000265491	RNF115	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	145745386	A->G	-	ENSG00000265491	RNF115	protein_coding	three_prime_utr	.	.	Alu	0.2
1	145745550	A->G	-	ENSG00000265491	RNF115	protein_coding	three_prime_utr	.	.	Alu	0.545455
1	145921978	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.3125
1	145921979	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.4375
1	145921980	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.1875
1	145921994	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.1875
1	145921998	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.384615
1	145922002	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.181818
1	145922041	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.214286
1	145922061	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.166667
1	145922075	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.5
1	145922076	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.2
1	145922137	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.2
1	145922141	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.692308
1	145922142	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.230769
1	145922162	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.5
1	145922167	A->G	-	ENSG00000211451	GNRHR2	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.294118
5	149493235	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	three_prime_utr	.	.	Alu	0.0816327
6	149591171	A->G	+	ENSG00000055211	GINM1	protein_coding	three_prime_utr	.	.	Alu	0.133333
6	149591241	A->G	+	ENSG00000055211	GINM1	protein_coding	three_prime_utr	.	.	Alu	0.111111
6	149725204	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	149725213	A->G	-	ENSG00000120253	NUP43	protein_coding	three_prime_utr	.	.	Alu	0.416667
1	150308716	A->G	+	ENSG00000266472	MRPS21	protein_coding	three_prime_utr	.	.	Alu	0.285714
5	150364978	A->G	-	ENSG00000070814	TCOF1	protein_coding	three_prime_utr	.	.	Alu	0.454545
5	150364979	A->G	-	ENSG00000070814	TCOF1	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	150507449	A->G	+	ENSG00000143374	TARS2	protein_coding	three_prime_utr	.	.	Alu	0.0769231
1	150731276	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.5
1	150731311	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.4
1	150732736	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0895522
1	150732745	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0517241
1	150732767	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0517241
1	150732772	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.173077
1	150732782	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0350877
1	150732797	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0877193
1	150732802	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0357143
1	150732810	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0967742
1	150732856	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0392157
1	150732881	A->G	-	ENSG00000163131	CTSS	protein_coding	three_prime_utr	.	.	Alu	0.0555556
5	151181349	A->G	-	ENSG00000198624	CCDC69	protein_coding	three_prime_utr	.	.	Alu	0.021978
5	151181355	A->G	-	ENSG00000198624	CCDC69	protein_coding	three_prime_utr	.	.	Alu	0.047619
1	151874499	A->G	-	ENSG00000159445	THEM4	protein_coding	three_prime_utr	.	.	Alu	0.08
X	154011217	A->G	-	ENSG00000184216	IRAK1	protein_coding	three_prime_utr	.	.	Alu	0.0428571
3	156540424	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	156540484	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.923077
3	156540494	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.541667
3	156540506	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.210526
3	156540519	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.4
3	156540530	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.5625
3	156541440	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.194444
3	156541499	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.210526
3	156541506	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.25641
3	156541510	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.0540541
3	156541551	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.12
3	156541552	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.173913
3	156541574	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.16
3	156541617	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.407407
3	156541618	A->G	-	ENSG00000114850	SSR3	protein_coding	three_prime_utr	.	.	Alu	0.357143
1	156722886	A->G	-	ENSG00000143319	ISG20L2	protein_coding	three_prime_utr	.	.	Alu	1
7	156970033	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.25
7	156970054	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.727273
7	156970159	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.166667
7	156970160	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.181818
7	156970189	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.583333
7	156970212	A->G	+	ENSG00000146909	NOM1	protein_coding	three_prime_utr	.	.	Alu	0.4
6	159679849	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0491803
6	159679850	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0862069
6	159679855	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0408163
6	159679877	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0384615
6	159679878	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.0384615
6	159680701	A->G	-	ENSG00000112096	SOD2	protein_coding	three_prime_utr	.	.	Alu	0.111111
1	160996561	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.32
1	160996562	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.36
1	160996563	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.12
1	160996628	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.0606061
1	160996644	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.740741
1	160998026	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.413793
1	160998027	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.0689655
1	160998043	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.722222
1	160998064	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.117647
1	160998066	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.15
1	160998067	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.52381
1	160998100	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.684211
1	160998101	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.421053
1	160998106	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.157895
1	160998109	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.444444
1	160998148	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.217391
4	165075168	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.166667
4	165075188	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.125
4	165075214	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.307692
4	165075312	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.125
4	165075316	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.133333
4	165075334	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.2
4	165075369	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.3
4	165075533	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.785714
2	171323412	A->G	-	ENSG00000123600	METTL8	protein_coding	three_prime_utr	.	.	Alu	0.272727
4	176331637	A->G	+	ENSG00000129128	SPCS3	protein_coding	three_prime_utr	.	.	Alu	0.0225564
4	176331689	A->G	+	ENSG00000129128	SPCS3	protein_coding	three_prime_utr	.	.	Alu	0.02
2	177227884	A->G	+	ENSG00000116044	NFE2L2	protein_coding	three_prime_utr	.	.	Alu	0.130435
2	177227889	A->G	+	ENSG00000116044	NFE2L2	protein_coding	three_prime_utr	.	.	Alu	0.0952381
1	179074975	A->G	+	ENSG00000116199	FAM20B	protein_coding	three_prime_utr	.	.	Alu	0.2
3	179399245	A->G	-	ENSG00000114450	GNB4	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	183491238	A->G	-	ENSG00000172578	KLHL6	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	183491274	A->G	-	ENSG00000172578	KLHL6	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	183672717	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0588235
3	183672739	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0857143
3	183672740	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0833333
3	183672819	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0666667
3	183672833	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	183672834	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0740741
3	183672835	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0666667
3	183672836	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.0666667
3	185292260	A->G	+	ENSG00000073803	MAP3K13	protein_coding	three_prime_utr	.	.	Alu	0.0526316
3	196353660	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.115385
3	196353680	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.0377358
3	196353729	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	196353753	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.230769
3	196353759	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.107143
2	200977600	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.636364
2	200978506	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.294118
2	200978536	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.08
2	200978572	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.5
2	200978573	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.125
2	200978587	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.352941
2	200978741	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.526316
2	200978747	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.7
2	200978748	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.809524
2	207612372	A->G	-	ENSG00000144401	METTL21A	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	212896839	A->G	+	ENSG00000162769	FLVCR1	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	216501776	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	216501792	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.225
2	216501804	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0769231
2	216501811	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.135135
2	216501817	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.128205
2	216501818	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.25641
2	216501847	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.285714
2	216501857	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.730769
2	216501867	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.34375
2	216501892	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0512821
2	216501901	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.171429
2	216501903	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.194444
2	216501919	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0625
2	216501921	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.30303
2	216501928	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0909091
2	216501950	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.16
2	216501951	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	216501976	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.285714
2	216501990	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.904762
2	216501999	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.263158
2	216502070	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.1
2	216502071	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.193548
2	216502080	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.135135
2	216502098	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.05
2	216502143	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0588235
2	216502145	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.228571
2	216502174	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.192308
2	216502177	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0714286
2	216502180	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0714286
2	216502196	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.173913
2	216502198	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.6
2	216502206	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.26087
2	216502207	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.173913
2	216502216	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.103448
2	216502242	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.108108
2	216502247	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	216502248	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0625
2	216502255	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	216502276	A->G	+	ENSG00000197756	RPL37A	protein_coding	three_prime_utr	.	.	Alu	0.0392157
1	220057921	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.583333
1	220057933	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.636364
1	220057934	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	220057956	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.133333
1	220057988	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.4
1	220058028	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	220058029	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	220058064	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.105263
1	220058142	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	220058145	A->G	-	ENSG00000162813	BPNT1	protein_coding	three_prime_utr	.	.	Alu	0.454545
2	230372610	A->G	+	ENSG00000185404	SP140L	protein_coding	three_prime_utr	.	.	Alu	0.769231
2	230372645	A->G	+	ENSG00000185404	SP140L	protein_coding	three_prime_utr	.	.	Alu	0.307692
2	233205636	A->G	+	ENSG00000168918	INPP5D	protein_coding	three_prime_utr	.	.	Alu	0.0652174
1	247298403	A->G	-	ENSG00000162714	ZNF496	protein_coding	three_prime_utr	.	.	Alu	0.0465116