Chr	Position	Editing	Strand	Ensembl_ID	Gene_name	Gene_type	Genomic_region	AA_change	Amino_Acid	Repeat	AN96
4	2938295	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.His->Arg	Alu	0.142857
4	2938299	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.Asn->Ser	Alu	0.571429
4	2938304	A->G	-	ENSG00000087269	NOP14	protein_coding	CDS	missense_variant	p.Gln->Arg	Alu	0.357143
19	7935248	A->G	-	ENSG00000104980	TIMM44	protein_coding	CDS	non_coding_transcript_exon_variant	.	Alu	0.166667
19	8492024	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	upstream_gene_variant	.	Alu	0.909091
3	69076412	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	synonymous_variant	p.Thr->Thr	Alu	0.727273
3	69076414	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Thr->Ala	Alu	0.818182
3	69076424	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	synonymous_variant	p.Val->Val	Alu	0.272727
3	69076428	A->G	-	ENSG00000144744	UBA3	protein_coding	CDS	missense_variant	p.Gln->Arg	Alu	0.272727
17	30773455	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	CDS	.	.	Alu	0.117647
X	41344503	A->G	-	ENSG00000215301	DDX3X	protein_coding	CDS	.	.	Alu	1
19	52616723	A->G	+	ENSG00000167766	ZNF83	protein_coding	CDS	.	.	Alu	1
19	52616739	A->G	+	ENSG00000167766	ZNF83	protein_coding	CDS	.	.	Alu	1
12	57483920	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	CDS	.	.	Alu	0.1875
12	57483956	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	CDS	.	.	Alu	0.454545
19	57864892	A->G	+	ENSG00000204514	ZNF814	protein_coding	CDS	.	.	Alu	0.4
19	57864915	A->G	+	ENSG00000204514	ZNF814	protein_coding	CDS	.	.	Alu	0.2
17	82260972	A->G	-	ENSG00000141526	SLC16A3	protein_coding	CDS	.	.	Alu	0.125
17	82261011	A->G	-	ENSG00000141526	SLC16A3	protein_coding	CDS	.	.	Alu	0.125
19	2291978	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.285714
19	2292005	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.153846
19	2292009	A->G	+	ENSG00000220008	LINGO3	protein_coding	five_prime_utr	.	.	Alu	0.0833333
3	9987030	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.1
3	9987051	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.0769231
3	9987093	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.138889
3	9987120	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	five_prime_utr	.	.	Alu	0.0555556
19	11865967	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.266667
19	11865972	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.1875
19	11865998	A->G	+	ENSG00000171291	ZNF439	protein_coding	five_prime_utr	.	.	Alu	0.166667
8	37877750	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	five_prime_utr	.	.	Alu	0.2
19	45854945	A->G	-	ENSG00000125755	SYMPK	protein_coding	five_prime_utr	.	.	Alu	0.272727
19	48461317	A->G	+	ENSG00000182324	KCNJ14	protein_coding	five_prime_utr	.	.	Alu	0.272727
19	48461318	A->G	+	ENSG00000182324	KCNJ14	protein_coding	five_prime_utr	.	.	Alu	0.583333
19	48461447	A->G	+	ENSG00000182324	KCNJ14	protein_coding	five_prime_utr	.	.	Alu	0.214286
19	48461472	A->G	+	ENSG00000182324	KCNJ14	protein_coding	five_prime_utr	.	.	Alu	0.3
11	65090420	A->G	+	ENSG00000149823	VPS51	protein_coding	five_prime_utr	.	.	Alu	0.636364
10	72220182	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.2
10	72220218	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.363636
10	72220248	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.35
10	72220261	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.380952
10	72220334	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.111111
10	72220373	A->G	+	ENSG00000166295	ANAPC16	protein_coding	five_prime_utr	.	.	Alu	0.111111
3	142126236	A->G	-	ENSG00000114126	TFDP2	protein_coding	five_prime_utr	.	.	Alu	0.117647
3	142126246	A->G	-	ENSG00000114126	TFDP2	protein_coding	five_prime_utr	.	.	Alu	0.117647
16	192571	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.181818
16	216511	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.142857
16	216515	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.142857
16	216521	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	1
16	216582	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.266667
16	216617	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.133333
16	216622	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.357143
16	216647	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.142857
16	216652	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.214286
16	221093	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.454545
16	221248	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.266667
16	221324	A->G	-	ENSG00000007392	LUC7L	protein_coding	Intergenic	.	.	Alu	0.181818
9	277228	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	1
9	277233	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.2
9	277404	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.357143
5	278523	A->G	+	ENSG00000249915	PDCD6	protein_coding	Intergenic	.	.	Alu	0.384615
12	361273	A->G	-	ENSG00000073614	KDM5A	protein_coding	Intergenic	.	.	Alu	0.166667
9	387395	A->G	+	ENSG00000107099	DOCK8	protein_coding	Intergenic	.	.	Alu	0.181818
17	400428	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4375
17	400429	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1875
17	400825	A->G	-	.	.	.	Intergenic	.	.	Alu	0.625
17	400829	A->G	-	.	.	.	Intergenic	.	.	Alu	0.266667
17	400830	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
17	400838	A->G	-	.	.	.	Intergenic	.	.	Alu	0.307692
17	409161	A->G	-	ENSG00000241525	AC141424.1	antisense	Intergenic	.	.	Alu	1
20	532289	A->G	-	ENSG00000101266	CSNK2A1	protein_coding	Intergenic	.	.	Alu	1
16	587945	A->G	-	.	.	.	Intergenic	.	.	Alu	0.7
11	651128	A->G	+	ENSG00000177030	DEAF1	protein_coding	Intergenic	.	.	Alu	1
18	683964	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.25
18	684027	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.105263
18	684029	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.3125
18	684046	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.142857
18	684051	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.4
19	693325	A->G	-	ENSG00000185198	PRSS57	protein_coding	Intergenic	.	.	Alu	0.181818
18	697841	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.625
18	697878	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.117647
18	697891	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.9
18	697914	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	1
18	697931	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.2
18	697932	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.4
18	704641	A->G	-	ENSG00000132199	ENOSF1	protein_coding	Intergenic	.	.	Alu	0.181818
12	758017	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.3
11	761394	A->G	+	ENSG00000177156	TALDO1	protein_coding	Intergenic	.	.	Alu	0.666667
12	764450	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.2
12	764513	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.7
12	764515	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.3
12	764557	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.133333
12	764591	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.08
12	764593	A->G	+	ENSG00000060237	WNK1	protein_coding	Intergenic	.	.	Alu	0.111111
18	787176	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.2
18	787228	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.133333
18	787232	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.117647
18	787238	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.2
18	787264	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.631579
18	787268	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.1
18	787282	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.25
18	787326	A->G	-	ENSG00000176105	YES1	protein_coding	Intergenic	.	.	Alu	0.111111
4	853832	A->G	-	ENSG00000178950	GAK	protein_coding	Intergenic	.	.	Alu	0.1875
7	871484	A->G	-	ENSG00000164828	SUN1	protein_coding	Intergenic	.	.	Alu	1
7	871485	A->G	-	ENSG00000164828	SUN1	protein_coding	Intergenic	.	.	Alu	1
7	871516	A->G	-	ENSG00000164828	SUN1	protein_coding	Intergenic	.	.	Alu	0.142857
7	974754	A->G	-	ENSG00000240230	COX19	protein_coding	Intergenic	.	.	Alu	0.2
10	990602	A->G	+	ENSG00000107937	GTPBP4	protein_coding	Intergenic	.	.	Alu	0.545455
19	1033008	A->G	+	ENSG00000064666	CNN2	protein_coding	Intergenic	.	.	Alu	0.909091
17	1100017	A->G	-	ENSG00000159842	ABR	protein_coding	Intergenic	.	.	Alu	1
16	1321972	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.105263
16	1322364	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.95
16	1322879	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.0465116
16	1322920	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.357143
16	1322949	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intergenic	.	.	Alu	0.115385
X	1342653	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.727273
X	1342657	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1342666	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1342698	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.181818
X	1343999	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1344015	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.6
X	1344022	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.384615
X	1344045	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
X	1344061	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.117647
X	1348352	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.73913
X	1349080	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.125
X	1349081	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.3125
X	1349092	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.166667
X	1349100	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.3
X	1349116	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.263158
X	1349172	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.235294
X	1349234	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.1
X	1349254	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
17	1354763	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.166667
17	1354801	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.25
X	1357090	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.363636
X	1360615	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0588235
X	1360657	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0540541
X	1360728	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0731707
X	1361489	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.1
X	1363003	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.25
X	1363018	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.125
X	1363055	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1363465	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	1
X	1363560	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.125
X	1363561	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.125
X	1363583	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.222222
X	1363805	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.272727
X	1363812	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.142857
X	1363817	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.230769
X	1363858	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.6
X	1364247	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.111111
X	1364249	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.333333
X	1364257	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.470588
X	1364266	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.529412
X	1364326	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.166667
X	1364329	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.333333
X	1364359	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.266667
X	1364369	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.230769
X	1364379	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.307692
X	1364404	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.333333
X	1364408	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.142857
X	1364447	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.266667
X	1364478	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.25
X	1364486	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.25
X	1364539	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.5
X	1364563	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.131579
X	1364674	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0869565
X	1364869	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.214286
X	1364885	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.285714
X	1364907	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.416667
X	1365036	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.6
X	1365055	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.533333
X	1365069	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.705882
X	1365104	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
X	1377241	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0625
X	1377243	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0645161
X	1377245	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.0967742
X	1377277	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.647059
X	1377293	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.185185
X	1377303	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.117647
X	1377308	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.5
X	1377309	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.6875
X	1377352	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.357143
X	1377365	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.692308
X	1377369	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.153846
X	1377378	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.214286
X	1377411	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.545455
X	1377412	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.2
X	1377414	A->G	-	ENSG00000185291	IL3RA	protein_coding	Intergenic	.	.	Alu	0.583333
16	1380813	A->G	-	ENSG00000059145	UNKL	protein_coding	Intergenic	.	.	Alu	0.25
X	1382837	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
X	1382912	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1382959	A->G	-	.	.	.	Intergenic	.	.	Alu	0.285714
X	1382989	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
X	1383012	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
X	1383104	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1383120	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	1383135	A->G	-	.	.	.	Intergenic	.	.	Alu	0.416667
X	1383150	A->G	-	.	.	.	Intergenic	.	.	Alu	0.7
17	1387760	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.142857
17	1388010	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.1
17	1388011	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.210526
17	1388022	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.277778
17	1388063	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.6
17	1388166	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.6
17	1388167	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.5
17	1388198	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.166667
17	1388203	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.470588
17	1388352	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.363636
17	1388394	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.352941
17	1388397	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.125
17	1388404	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.368421
17	1388416	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.176471
17	1388453	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.133333
17	1388459	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.230769
17	1389802	A->G	-	ENSG00000108953	YWHAE	protein_coding	Intergenic	.	.	Alu	0.0833333
1	1396473	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.384615
1	1396498	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.166667
1	1396539	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.25
1	1396541	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.25
1	1396676	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.133333
1	1396717	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.36
1	1396744	A->G	-	ENSG00000221978	CCNL2	protein_coding	Intergenic	.	.	Alu	0.666667
X	1398220	A->G	+	ENSG00000236871	LINC00106	lincRNA	Intergenic	.	.	Alu	0.833333
X	1398221	A->G	+	ENSG00000236871	LINC00106	lincRNA	Intergenic	.	.	Alu	0.333333
X	1398225	A->G	+	ENSG00000236871	LINC00106	lincRNA	Intergenic	.	.	Alu	0.181818
X	1398276	A->G	+	ENSG00000236871	LINC00106	lincRNA	Intergenic	.	.	Alu	0.2
17	1447732	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	1
17	1447733	A->G	-	ENSG00000167193	CRK	protein_coding	Intergenic	.	.	Alu	0.769231
X	1469296	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.5
X	1469390	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.2
X	1469394	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.2
X	1506225	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.125
X	1506226	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.529412
X	1506239	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.25
X	1506272	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.2
X	1514976	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.153846
X	1515000	A->G	-	ENSG00000182162	P2RY8	protein_coding	Intergenic	.	.	Alu	0.133333
17	1524239	A->G	-	ENSG00000174238	PITPNA	protein_coding	Intergenic	.	.	Alu	0.785714
17	1524241	A->G	-	ENSG00000174238	PITPNA	protein_coding	Intergenic	.	.	Alu	0.666667
17	1524247	A->G	-	ENSG00000174238	PITPNA	protein_coding	Intergenic	.	.	Alu	0.625
17	1549178	A->G	-	ENSG00000174238	PITPNA	protein_coding	Intergenic	.	.	Alu	0.466667
19	1587329	A->G	-	ENSG00000071655	MBD3	protein_coding	Intergenic	.	.	Alu	0.2
16	1647621	A->G	+	ENSG00000007545	CRAMP1	protein_coding	Intergenic	.	.	Alu	0.111111
16	1654092	A->G	+	ENSG00000007545	CRAMP1	protein_coding	Intergenic	.	.	Alu	0.2
16	1654131	A->G	+	ENSG00000007545	CRAMP1	protein_coding	Intergenic	.	.	Alu	0.5
12	1695434	A->G	+	ENSG00000006831	ADIPOR2	protein_coding	Intergenic	.	.	Alu	0.2
12	1695458	A->G	+	ENSG00000006831	ADIPOR2	protein_coding	Intergenic	.	.	Alu	0.2
12	1695549	A->G	+	ENSG00000006831	ADIPOR2	protein_coding	Intergenic	.	.	Alu	0.454545
X	1732434	A->G	+	.	.	.	Intergenic	.	.	Alu	1
4	1733923	A->G	+	ENSG00000013810	TACC3	protein_coding	Intergenic	.	.	Alu	0.2
16	1752659	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.166667
16	1754650	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.333333
16	1754656	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.133333
16	1754664	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.125
16	1754716	A->G	+	ENSG00000138834	MAPK8IP3	protein_coding	Intergenic	.	.	Alu	0.230769
1	1836468	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	1837393	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1838492	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	1838537	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.285714
1	1838583	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.307692
1	1871343	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.1875
1	1871360	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	1871371	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.375
1	1871398	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.105263
1	1871419	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.8
1	1871446	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.478261
1	1872060	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	1872064	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.157895
1	1872130	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1872153	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.157895
1	1872176	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.133333
1	1872220	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.375
1	1881471	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.09375
1	1881501	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	1881506	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.461538
1	1881672	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	1881673	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.272727
1	1881689	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	1883992	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0784314
1	1883993	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.030303
1	1884103	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.117647
1	1884104	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0425532
1	1884153	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.285714
1	1884163	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.129032
1	1884166	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.133333
1	1884170	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0857143
1	1884199	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.146341
1	1884221	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.12
1	1884238	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1884260	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.25
1	1884276	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.105263
1	1884279	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	1884283	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
1	1884302	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.210526
1	1884304	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.1
1	1884349	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.428571
1	1884350	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.55
1	1884358	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.117647
1	1884712	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1884713	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.193548
1	1884718	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.193548
4	1885003	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.294118
4	1885030	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.466667
4	1885031	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.166667
1	1885586	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.333333
1	1885629	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.2
1	1885721	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	1885725	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.12
1	1885726	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.12
1	1885763	A->G	-	ENSG00000078369	GNB1	protein_coding	Intergenic	.	.	Alu	0.111111
4	1894526	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.833333
4	1894530	A->G	+	ENSG00000109685	NSD2	protein_coding	Intergenic	.	.	Alu	0.2
19	2206447	A->G	+	ENSG00000104885	DOT1L	protein_coding	Intergenic	.	.	Alu	0.272727
19	2206464	A->G	+	ENSG00000104885	DOT1L	protein_coding	Intergenic	.	.	Alu	0.181818
16	2225840	A->G	+	ENSG00000167967	E4F1	protein_coding	Intergenic	.	.	Alu	0.166667
16	2225841	A->G	+	ENSG00000167967	E4F1	protein_coding	Intergenic	.	.	Alu	0.666667
19	2237232	A->G	+	ENSG00000104886	PLEKHJ1	protein_coding	Intergenic	.	.	Alu	0.666667
19	2237236	A->G	+	ENSG00000104886	PLEKHJ1	protein_coding	Intergenic	.	.	Alu	0.7
19	2237270	A->G	+	ENSG00000104886	PLEKHJ1	protein_coding	Intergenic	.	.	Alu	0.7
19	2237271	A->G	+	ENSG00000104886	PLEKHJ1	protein_coding	Intergenic	.	.	Alu	0.7
16	2260189	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.125
16	2260190	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.3125
16	2260218	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.142857
16	2260248	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.3
16	2260252	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.578947
16	2260253	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.35
16	2260261	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.08
16	2260284	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.107143
16	2260288	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.178571
16	2260332	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.5
16	2260333	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.416667
16	2260335	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.166667
16	2260337	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.454545
16	2260338	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.727273
16	2260369	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.210526
16	2260372	A->G	-	ENSG00000205937	RNPS1	protein_coding	Intergenic	.	.	Alu	0.25
1	2263850	A->G	+	ENSG00000157933	SKI	protein_coding	Intergenic	.	.	Alu	0.4
1	2263918	A->G	+	ENSG00000157933	SKI	protein_coding	Intergenic	.	.	Alu	0.153846
19	2279602	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	1
19	2284423	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0952381
19	2284464	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.09375
19	2284502	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0689655
19	2284503	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.173913
19	2284551	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.15625
19	2284602	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0588235
19	2284716	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.107143
19	2284732	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.117647
19	2284787	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.115385
19	2284789	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.111111
19	2284797	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0967742
19	2284840	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0952381
19	2284844	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.1
19	2284853	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.2
19	2292026	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.15
19	2292073	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.176471
19	2292081	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.1875
19	2292090	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.176471
19	2292094	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.133333
19	2292097	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.125
19	2292113	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.5
19	2292291	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.16
19	2292300	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.1
19	2292318	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.275862
19	2292323	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.103448
19	2292343	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.0740741
19	2292568	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.130435
19	2292569	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.190476
19	2292590	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.125
19	2292594	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.136364
19	2292619	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.619048
19	2296938	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.375
19	2296942	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.391304
19	2296971	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.4
19	2296977	A->G	+	ENSG00000273734	AC005258.1	protein_coding	Intergenic	.	.	Alu	0.380952
1	2370754	A->G	-	ENSG00000116151	MORN1	protein_coding	Intergenic	.	.	Alu	0.8
19	2419407	A->G	-	ENSG00000178297	TMPRSS9	protein_coding	Intergenic	.	.	Alu	0.2
4	2493526	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2493527	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.166667
4	2493565	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.545455
4	2493665	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.25
4	2493723	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.111111
4	2493726	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.235294
4	2500027	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0952381
4	2500038	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.136364
4	2500060	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.105263
4	2502871	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.166667
4	2502882	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.555556
4	2502899	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.210526
4	2502930	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.764706
4	2502945	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.111111
4	2502963	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.222222
4	2543585	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.5
4	2543602	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.230769
4	2543670	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.111111
4	2543671	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.111111
4	2543681	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.125
4	2543692	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.266667
4	2543700	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.133333
4	2543738	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
4	2543747	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2543751	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.35
4	2543762	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.0833333
4	2543825	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.5
4	2543827	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.4375
4	2558063	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.166667
4	2558072	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.2
4	2558087	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
4	2558121	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.1
4	2558125	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.210526
4	2558151	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.105263
4	2558152	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.444444
4	2558168	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.111111
4	2558175	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.333333
4	2589929	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.272727
4	2589973	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.230769
4	2589974	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.230769
4	2589988	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
4	2589996	A->G	+	ENSG00000063978	RNF4	protein_coding	Intergenic	.	.	Alu	0.117647
17	2600318	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.4
17	2600319	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.5
17	2600360	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.157895
17	2611212	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.230769
17	2611214	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.307692
17	2611215	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.230769
17	2611241	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.181818
17	2611308	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.181818
17	2611321	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.166667
17	2611347	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.125
17	2611353	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.125
17	2611361	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.117647
17	2618861	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.166667
17	2631098	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.2
17	2631121	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.125
17	2631159	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.142857
17	2636017	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.4
17	2636048	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.166667
17	2636061	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.133333
17	2636092	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.363636
18	2662459	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.181818
18	2662524	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.1875
17	2672241	A->G	+	ENSG00000007168	PAFAH1B1	protein_coding	Intergenic	.	.	Alu	0.9
18	2681355	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.133333
18	2681458	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.105263
18	2681478	A->G	+	ENSG00000101596	SMCHD1	protein_coding	Intergenic	.	.	Alu	0.0909091
4	2691758	A->G	+	ENSG00000125386	FAM193A	protein_coding	Intergenic	.	.	Alu	0.125
X	2717250	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.133333
X	2717254	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.125
X	2717269	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.125
X	2717332	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.0869565
X	2717335	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.0740741
X	2725019	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.105263
X	2725050	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.666667
X	2725141	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.0588235
X	2730776	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.190476
X	2730782	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.15
X	2730837	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.0967742
X	2730842	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.0571429
X	2730862	A->G	+	ENSG00000002586	CD99	protein_coding	Intergenic	.	.	Alu	0.129032
X	2744728	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
X	2744736	A->G	+	.	.	.	Intergenic	.	.	Alu	1
X	2744737	A->G	+	.	.	.	Intergenic	.	.	Alu	0.722222
X	2744742	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
X	2744772	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
X	2744773	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
X	2744780	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
X	2744806	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
X	2744880	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
X	2744936	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
X	2744941	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
X	2744943	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
X	2744977	A->G	+	.	.	.	Intergenic	.	.	Alu	0.178571
7	2757024	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.166667
7	2757027	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.125
7	2757028	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	1
7	2757064	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.0909091
7	2757069	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.95
7	2757071	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.117647
7	2757314	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.275862
7	2757315	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.586207
7	2757318	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.34375
7	2757330	A->G	-	ENSG00000174945	AMZ1	protein_coding	Intergenic	.	.	Alu	0.243243
7	2789101	A->G	-	ENSG00000146535	GNA12	protein_coding	Intergenic	.	.	Alu	0.0833333
20	2886735	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.111111
20	2886777	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.153846
20	2904522	A->G	+	ENSG00000132670	PTPRA	protein_coding	Intergenic	.	.	Alu	0.636364
10	3075825	A->G	+	ENSG00000067057	PFKP	protein_coding	Intergenic	.	.	Alu	0.7
4	3140096	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.0952381
4	3140100	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.1
4	3140114	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.125
4	3140181	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.117647
4	3140193	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.294118
4	3140210	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.0909091
19	3170744	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3170749	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
19	3181274	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
19	3181593	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
19	3181615	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
19	3181616	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
19	3181667	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
19	3181683	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
19	3182338	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3182378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
19	3182404	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
19	3182445	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
19	3182480	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
19	3182490	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
19	3182590	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
19	3182605	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
19	3182617	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3182622	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
19	3183678	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
19	3183709	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3183723	A->G	+	.	.	.	Intergenic	.	.	Alu	0.263158
19	3183724	A->G	+	.	.	.	Intergenic	.	.	Alu	0.409091
19	3183728	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
19	3183741	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
19	3183749	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
19	3183751	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
19	3183763	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
4	3190226	A->G	+	ENSG00000197386	HTT	protein_coding	Intergenic	.	.	Alu	0.5
4	3347257	A->G	+	ENSG00000159788	RGS12	protein_coding	Intergenic	.	.	Alu	0.769231
4	3347267	A->G	+	ENSG00000159788	RGS12	protein_coding	Intergenic	.	.	Alu	0.833333
4	3347292	A->G	+	ENSG00000159788	RGS12	protein_coding	Intergenic	.	.	Alu	0.727273
4	3347297	A->G	+	ENSG00000159788	RGS12	protein_coding	Intergenic	.	.	Alu	0.818182
9	3470375	A->G	-	ENSG00000080298	RFX3	protein_coding	Intergenic	.	.	Alu	0.2
19	3484584	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
19	3484592	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3484796	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	3484801	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
19	3489734	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
19	3489740	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
19	3540861	A->G	+	ENSG00000183397	C19orf71	protein_coding	Intergenic	.	.	Alu	0.25
11	3689903	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.166667
11	3701327	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.142857
11	3701328	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.214286
11	3701753	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.136364
11	3701814	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.392857
11	3701818	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.189189
11	3701824	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.84375
11	3722205	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.181818
11	3782636	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.190476
11	3782640	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.125
11	3782699	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.3
11	3789578	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.166667
11	3794389	A->G	-	ENSG00000110713	NUP98	protein_coding	Intergenic	.	.	Alu	0.142857
16	3802335	A->G	-	ENSG00000005339	CREBBP	protein_coding	Intergenic	.	.	Alu	0.2
17	3911071	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.111111
17	3911107	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.142857
17	3911187	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0769231
17	3911204	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0740741
17	3911206	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.214286
17	3911207	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.25
17	3911215	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.142857
17	3911225	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0625
17	3911237	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.135135
17	3911239	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0681818
17	3911259	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.0444444
17	3911260	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.130435
17	3911276	A->G	-	ENSG00000108405	P2RX1	protein_coding	Intergenic	.	.	Alu	0.75
20	3912703	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.428571
20	3912711	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.153846
20	3912727	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.166667
20	3912794	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.5
20	3912803	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.125
20	3912829	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	1
20	3912856	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.0952381
20	3912862	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.0869565
20	3912865	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.36
20	3912906	A->G	+	ENSG00000125779	PANK2	protein_coding	Intergenic	.	.	Alu	0.266667
17	3934586	A->G	-	ENSG00000074370	ATP2A3	protein_coding	Intergenic	.	.	Alu	0.181818
17	3934589	A->G	-	ENSG00000074370	ATP2A3	protein_coding	Intergenic	.	.	Alu	0.2
20	3981542	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.0909091
20	3981617	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.545455
20	3981644	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.6
20	3985801	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.117647
20	3985817	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.230769
20	3986372	A->G	-	ENSG00000101236	RNF24	protein_coding	Intergenic	.	.	Alu	0.25
19	4029724	A->G	-	ENSG00000105229	PIAS4	protein_coding	Intergenic	.	.	Alu	0.8
19	4029768	A->G	-	ENSG00000105229	PIAS4	protein_coding	Intergenic	.	.	Alu	0.333333
19	4029772	A->G	-	ENSG00000105229	PIAS4	protein_coding	Intergenic	.	.	Alu	0.153846
19	4041149	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
19	4041168	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
11	4097230	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.181818
11	4097254	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.9
11	4097261	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.272727
11	4114470	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.727273
11	4114478	A->G	+	ENSG00000167325	RRM1	protein_coding	Intergenic	.	.	Alu	0.3
17	4285052	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.5
17	4339469	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.5
17	4339482	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
17	4339483	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
17	4339522	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.333333
17	4353950	A->G	-	ENSG00000132388	UBE2G1	protein_coding	Intergenic	.	.	Alu	0.166667
19	4434215	A->G	+	ENSG00000167670	CHAF1A	protein_coding	Intergenic	.	.	Alu	0.545455
19	4434225	A->G	+	ENSG00000167670	CHAF1A	protein_coding	Intergenic	.	.	Alu	0.636364
16	4481228	A->G	+	ENSG00000153406	NMRAL1	protein_coding	Intergenic	.	.	Alu	1
16	4481238	A->G	+	ENSG00000153406	NMRAL1	protein_coding	Intergenic	.	.	Alu	1
17	4529647	A->G	+	ENSG00000183018	SPNS2	protein_coding	Intergenic	.	.	Alu	0.181818
16	4628341	A->G	+	ENSG00000102858	MGRN1	protein_coding	Intergenic	.	.	Alu	0.214286
7	4696136	A->G	+	ENSG00000164916	FOXK1	protein_coding	Intergenic	.	.	Alu	0.153846
7	4708904	A->G	+	ENSG00000164916	FOXK1	protein_coding	Intergenic	.	.	Alu	0.2
7	4708954	A->G	+	ENSG00000164916	FOXK1	protein_coding	Intergenic	.	.	Alu	0.111111
7	4708971	A->G	+	ENSG00000164916	FOXK1	protein_coding	Intergenic	.	.	Alu	0.230769
7	4708977	A->G	+	ENSG00000164916	FOXK1	protein_coding	Intergenic	.	.	Alu	0.133333
7	4709015	A->G	+	ENSG00000164916	FOXK1	protein_coding	Intergenic	.	.	Alu	0.2
7	4787401	A->G	+	ENSG00000242802	AP5Z1	protein_coding	Intergenic	.	.	Alu	1
20	4819060	A->G	-	ENSG00000101265	RASSF2	protein_coding	Intergenic	.	.	Alu	0.2
17	4927168	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
17	4927210	A->G	-	.	.	.	Intergenic	.	.	Alu	0.454545
20	4975991	A->G	-	ENSG00000089057	SLC23A2	protein_coding	Intergenic	.	.	Alu	0.272727
20	4975992	A->G	-	ENSG00000089057	SLC23A2	protein_coding	Intergenic	.	.	Alu	0.181818
3	5127696	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0740741
3	5127716	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0512821
3	5127723	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.05
3	5127726	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0952381
3	5127752	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.5
3	5127793	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.08
3	5127912	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.117647
3	5127919	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.25
3	5127934	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.097561
3	5127935	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.195122
3	5127956	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0588235
3	5127978	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0769231
3	5128007	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0444444
3	5128010	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.047619
3	5128011	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.05
3	5128012	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0487805
3	5128056	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0588235
3	5128075	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.131579
3	5128084	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0666667
3	5128114	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0909091
20	5131080	A->G	+	ENSG00000101290	CDS2	protein_coding	Intergenic	.	.	Alu	0.153846
3	5133848	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.105263
3	5159012	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.2
3	5159179	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.230769
3	5159185	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.125
3	5159189	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.117647
3	5159245	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.08
3	5159347	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.173913
3	5159348	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.130435
3	5159426	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.266667
3	5159427	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.375
3	5159450	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0869565
3	5159452	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0833333
3	5159455	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.166667
3	5159481	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.257143
3	5159482	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.371429
3	5159487	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.0606061
3	5159523	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.05
3	5159552	A->G	+	ENSG00000134108	ARL8B	protein_coding	Intergenic	.	.	Alu	0.277778
7	5196965	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.26087
7	5196992	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.2
7	5197005	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.105263
7	5197033	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.178571
7	5197037	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0666667
7	5197057	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0689655
7	5197061	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0666667
7	5197082	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.0740741
7	5197094	A->G	+	ENSG00000157954	WIPI2	protein_coding	Intergenic	.	.	Alu	0.157895
7	5334429	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.181818
7	5334435	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.363636
17	5344926	A->G	+	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.2
7	5366395	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.277778
7	5366396	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.25
7	5366419	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.388889
7	5366468	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.7
7	5372164	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
17	5374892	A->G	-	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.181818
17	5374914	A->G	-	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.2
17	5375004	A->G	-	ENSG00000029725	RABEP1	protein_coding	Intergenic	.	.	Alu	0.153846
7	5398198	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.181818
7	5398282	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5398308	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.363636
7	5398309	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.272727
7	5398347	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.15
7	5398348	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.105263
7	5398363	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.222222
7	5398373	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.105263
7	5398374	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.105263
7	5398402	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.1875
7	5398442	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.217391
7	5398443	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.136364
7	5398451	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0833333
7	5398497	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0714286
7	5398514	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0869565
7	5398570	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0952381
7	5398654	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.1
7	5398733	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0555556
7	5398742	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.075
7	5398746	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0769231
17	5399086	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.35
17	5399096	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.1
17	5399155	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.0645161
17	5399164	A->G	-	ENSG00000108559	NUP88	protein_coding	Intergenic	.	.	Alu	0.2
7	5414489	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.25
7	5414541	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.2
7	5414545	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.230769
7	5414551	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5414577	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.166667
7	5415399	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0833333
7	5415410	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0869565
7	5415412	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.125
7	5415444	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	1
7	5415445	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	1
7	5415491	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0909091
7	5415498	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0869565
7	5415506	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.238095
7	5415510	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.578947
7	5415515	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.5
7	5415516	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.444444
7	5415548	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.105263
7	5415550	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.105263
7	5415551	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.111111
7	5415556	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0952381
7	5415563	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0909091
7	5415572	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.0952381
7	5415582	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.478261
7	5415599	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.133333
7	5415608	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.117647
7	5415618	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.133333
7	5415627	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.125
7	5415631	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.1875
7	5415645	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.1
7	5415662	A->G	-	ENSG00000182095	TNRC18	protein_coding	Intergenic	.	.	Alu	0.133333
20	5601267	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.2
20	5601268	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.2
20	5601507	A->G	-	ENSG00000125772	GPCPD1	protein_coding	Intergenic	.	.	Alu	0.2
19	5658656	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.4
19	5658665	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.3
19	5658666	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.2
19	5658696	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.111111
19	5658722	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.588235
19	5658732	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.1875
19	5659002	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.583333
19	5659024	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.153846
19	5659025	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.538462
19	5659107	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.2
19	5659254	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.2
19	5659652	A->G	+	ENSG00000160633	SAFB	protein_coding	Intergenic	.	.	Alu	0.181818
7	5684241	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.25
19	5715721	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.454545
19	5715732	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.181818
19	5715751	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.636364
19	5715770	A->G	+	ENSG00000196365	LONP1	protein_coding	Intergenic	.	.	Alu	0.454545
7	5742750	A->G	-	ENSG00000011275	RNF216	protein_coding	Intergenic	.	.	Alu	0.2
19	5830570	A->G	-	.	.	.	Intergenic	.	.	Alu	0.928571
7	6033041	A->G	-	ENSG00000157999	ANKRD61	protein_coding	Intergenic	.	.	Alu	0.166667
7	6033045	A->G	-	ENSG00000157999	ANKRD61	protein_coding	Intergenic	.	.	Alu	0.1
7	6033057	A->G	-	ENSG00000157999	ANKRD61	protein_coding	Intergenic	.	.	Alu	0.111111
7	6129437	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.363636
7	6129506	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.2
7	6129507	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.272727
7	6129540	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.153846
7	6129606	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.2
7	6135462	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.142857
7	6135489	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.153846
7	6135530	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.4
7	6135547	A->G	+	ENSG00000106346	USP42	protein_coding	Intergenic	.	.	Alu	0.2
7	6396915	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.2
7	6397120	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	1
7	6397318	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.333333
7	6397358	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.4
7	6397359	A->G	+	ENSG00000136238	RAC1	protein_coding	Intergenic	.	.	Alu	0.3
18	6408742	A->G	-	ENSG00000154655	L3MBTL4	protein_coding	Intergenic	.	.	Alu	0.2
7	6419146	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.5
7	6419159	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.214286
7	6419186	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.272727
7	6428615	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.166667
7	6428624	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.25
7	6428625	A->G	-	ENSG00000164535	DAGLB	protein_coding	Intergenic	.	.	Alu	0.133333
9	6488039	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.133333
9	6488045	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.153846
9	6488055	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.2
9	6488062	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.111111
9	6488096	A->G	+	ENSG00000147854	UHRF2	protein_coding	Intergenic	.	.	Alu	0.153846
17	6564556	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
17	6564557	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
17	6564563	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
4	6787058	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.636364
4	6787060	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.636364
4	6787101	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.181818
4	6787102	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.272727
4	6787127	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.15
4	6787131	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.111111
4	6833545	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.307692
4	6833550	A->G	+	ENSG00000170871	KIAA0232	protein_coding	Intergenic	.	.	Alu	0.692308
1	6844539	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.142857
1	6844549	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.611111
1	6844565	A->G	+	ENSG00000171735	CAMTA1	protein_coding	Intergenic	.	.	Alu	0.153846
17	7265300	A->G	-	.	.	.	Intergenic	.	.	Alu	1
17	7265314	A->G	-	.	.	.	Intergenic	.	.	Alu	1
17	7472717	A->G	-	ENSG00000174282	ZBTB4	protein_coding	Intergenic	.	.	Alu	0.181818
7	7704621	A->G	+	ENSG00000106399	RPA3	protein_coding	Intergenic	.	.	Alu	0.2
17	7866116	A->G	-	ENSG00000183011	NAA38	protein_coding	Intergenic	.	.	Alu	0.181818
19	7935273	A->G	-	ENSG00000104980	TIMM44	protein_coding	Intergenic	.	.	Alu	0.419355
19	7935274	A->G	-	ENSG00000104980	TIMM44	protein_coding	Intergenic	.	.	Alu	0.56
19	7935304	A->G	-	ENSG00000104980	TIMM44	protein_coding	Intergenic	.	.	Alu	0.529412
19	7954251	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
19	7954508	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
19	7954513	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
19	7954531	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
19	7972681	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.0909091
19	7972885	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.255319
19	7976887	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.615385
19	7976891	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.357143
19	7976925	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.470588
19	7976934	A->G	-	ENSG00000066044	ELAVL1	protein_coding	Intergenic	.	.	Alu	0.1875
20	8229981	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.176471
19	8239272	A->G	+	ENSG00000090661	CERS4	protein_coding	Intergenic	.	.	Alu	0.928571
19	8239319	A->G	+	ENSG00000090661	CERS4	protein_coding	Intergenic	.	.	Alu	1
20	8266979	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.153846
17	8272119	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
20	8402724	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	8403928	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	1
1	8403929	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	1
1	8403955	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.35
1	8403963	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.136364
1	8403968	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.545455
1	8403969	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.0909091
1	8403995	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.666667
1	8403998	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.130435
1	8403999	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.130435
1	8404004	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.0909091
1	8404024	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.285714
1	8404025	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.133333
1	8404026	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.5
1	8404057	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	1
1	8404062	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.117647
1	8404066	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.333333
1	8404079	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.5
1	8404293	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.25
1	8404295	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.357143
19	8471985	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.2
19	8472016	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.142857
19	8472083	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.0909091
19	8477567	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.133333
19	8480256	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.133333
19	8480265	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.2
19	8480289	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.153846
19	8480326	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.5
19	8480339	A->G	+	ENSG00000099783	HNRNPM	protein_coding	Intergenic	.	.	Alu	0.5
19	8493858	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.166667
19	8493873	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.133333
19	8493890	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.352941
19	8493913	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.133333
19	8493936	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.25
19	8494073	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.153846
19	8494661	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.125
19	8494667	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.0952381
19	8494705	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.26087
19	8494717	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.125
19	8494810	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.666667
19	8494826	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.166667
19	8494827	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.166667
19	8494832	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.611111
19	8494883	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intergenic	.	.	Alu	0.214286
20	8496283	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.142857
1	8600957	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.642857
1	8600959	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.75
1	8600991	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.611111
1	8601116	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.181818
1	8607678	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.416667
1	8607764	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.3
1	8607798	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	0.3
18	8616782	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.166667
18	8616814	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.2
18	8616818	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.391304
18	8616831	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.388889
18	8616849	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.772727
18	8616853	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.142857
18	8616877	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.1875
18	8616884	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0555556
18	8616889	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.0555556
18	8616911	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.172414
18	8616913	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.666667
18	8632198	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.181818
18	8632199	A->G	+	ENSG00000206418	RAB12	protein_coding	Intergenic	.	.	Alu	0.181818
1	8644785	A->G	-	ENSG00000142599	RERE	protein_coding	Intergenic	.	.	Alu	1
20	8804734	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.333333
20	8804884	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.3
20	8861609	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.166667
20	8861619	A->G	+	ENSG00000182621	PLCB1	protein_coding	Intergenic	.	.	Alu	0.272727
18	9156014	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.142857
18	9156015	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.142857
18	9156031	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.142857
18	9156036	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.133333
18	9156058	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.133333
18	9156083	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.2
18	9156087	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.6
18	9156088	A->G	+	ENSG00000101745	ANKRD12	protein_coding	Intergenic	.	.	Alu	0.5
11	9162772	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1875
11	9194857	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.107143
11	9194864	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9194880	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.233333
11	9194884	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1
11	9194889	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0689655
11	9194892	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0810811
11	9194951	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0606061
11	9194989	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0555556
11	9194990	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0571429
11	9194996	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.09375
11	9229965	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.105263
11	9229967	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.105263
11	9230047	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0967742
11	9230057	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0740741
11	9230073	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0689655
11	9230105	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.153846
11	9230330	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9230333	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0769231
11	9230338	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0869565
11	9230357	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.277778
11	9230369	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.625
11	9230381	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.26087
11	9230420	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.333333
11	9230474	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.411765
11	9230520	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0833333
11	9230522	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0769231
11	9238907	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0882353
11	9238914	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.0540541
11	9238924	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.148148
11	9238929	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.09375
11	9238943	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.105263
11	9238969	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.153846
11	9239033	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.1
11	9239088	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.357143
11	9239113	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.181818
11	9239305	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.142857
11	9239397	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.133333
11	9249441	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.111111
11	9249474	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.142857
11	9257499	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.166667
11	9257539	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.357143
11	9257614	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.133333
11	9257620	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	1
11	9257827	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.272727
11	9257921	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.230769
11	9263345	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.2
11	9263358	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.416667
11	9263359	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.25
11	9263385	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.363636
11	9263425	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.6
11	9263426	A->G	-	ENSG00000184014	DENND5A	protein_coding	Intergenic	.	.	Alu	0.3
11	9291656	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.1875
11	9291667	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.105263
11	9291672	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.277778
11	9291673	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.111111
11	9303683	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.105263
11	9303735	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.125
11	9303744	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.133333
11	9303753	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.2
11	9303773	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.133333
11	9303805	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.142857
11	9306116	A->G	-	ENSG00000166471	TMEM41B	protein_coding	Intergenic	.	.	Alu	0.307692
11	9480676	A->G	+	ENSG00000166478	ZNF143	protein_coding	Intergenic	.	.	Alu	0.916667
11	9480685	A->G	+	ENSG00000166478	ZNF143	protein_coding	Intergenic	.	.	Alu	0.916667
11	9480691	A->G	+	ENSG00000166478	ZNF143	protein_coding	Intergenic	.	.	Alu	1
2	9506435	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.153846
2	9506442	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.272727
2	9506495	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.2
2	9506531	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.8
2	9506534	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.176471
2	9507774	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.5
2	9507851	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.727273
2	9513135	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.454545
2	9523999	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.272727
19	9532421	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.384615
19	9532502	A->G	-	ENSG00000130818	ZNF426	protein_coding	Intergenic	.	.	Alu	0.2
2	9532537	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.333333
2	9532548	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.307692
2	9532574	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.2
2	9532586	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.363636
2	9532600	A->G	-	ENSG00000151694	ADAM17	protein_coding	Intergenic	.	.	Alu	0.166667
1	9562268	A->G	+	ENSG00000171612	SLC25A33	protein_coding	Intergenic	.	.	Alu	0.3
1	9562335	A->G	+	ENSG00000171612	SLC25A33	protein_coding	Intergenic	.	.	Alu	0.428571
1	9562336	A->G	+	ENSG00000171612	SLC25A33	protein_coding	Intergenic	.	.	Alu	0.153846
19	9583778	A->G	-	ENSG00000197961	ZNF121	protein_coding	Intergenic	.	.	Alu	1
2	9607102	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.133333
2	9607153	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.105263
2	9607154	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.315789
2	9607417	A->G	-	ENSG00000134308	YWHAQ	protein_coding	Intergenic	.	.	Alu	0.125
8	9635135	A->G	+	ENSG00000173273	TNKS	protein_coding	Intergenic	.	.	Alu	0.142857
1	9674867	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.214286
1	9674922	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.181818
1	9674968	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.157895
1	9696520	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.272727
1	9696616	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.181818
1	9705376	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.230769
1	9705382	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.133333
1	9705418	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.105263
1	9705443	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.222222
1	9705463	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.230769
1	9705480	A->G	+	ENSG00000171608	PIK3CD	protein_coding	Intergenic	.	.	Alu	0.1875
3	9800939	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.47619
3	9800972	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.0909091
3	9801977	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.363636
3	9801986	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.333333
3	9802118	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.4
3	9802119	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.933333
3	9802128	A->G	+	ENSG00000241553	ARPC4	protein_coding	Intergenic	.	.	Alu	0.285714
1	9927756	A->G	-	ENSG00000162441	LZIC	protein_coding	Intergenic	.	.	Alu	0.545455
18	9936626	A->G	+	ENSG00000101558	VAPA	protein_coding	Intergenic	.	.	Alu	0.047619
3	10152222	A->G	+	.	.	.	Intergenic	.	.	Alu	0.269841
3	10152248	A->G	+	.	.	.	Intergenic	.	.	Alu	0.148148
3	10152249	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10152294	A->G	+	.	.	.	Intergenic	.	.	Alu	0.296296
3	10152310	A->G	+	.	.	.	Intergenic	.	.	Alu	0.310345
3	10152321	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
3	10152356	A->G	+	.	.	.	Intergenic	.	.	Alu	0.533333
3	10152871	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
3	10152909	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	10152910	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10152957	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
3	10152966	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10152967	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10153089	A->G	+	.	.	.	Intergenic	.	.	Alu	0.136364
3	10153100	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
3	10153118	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0740741
3	10153127	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0689655
3	10153131	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
3	10153157	A->G	+	.	.	.	Intergenic	.	.	Alu	0.171429
3	10153167	A->G	+	.	.	.	Intergenic	.	.	Alu	0.16129
3	10153198	A->G	+	.	.	.	Intergenic	.	.	Alu	0.30303
3	10153199	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	10153205	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
3	10153219	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
3	10153249	A->G	+	.	.	.	Intergenic	.	.	Alu	0.222222
3	10153262	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0740741
3	10153294	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
3	10153295	A->G	+	.	.	.	Intergenic	.	.	Alu	0.115385
3	10153298	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
3	10153299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	10153300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.172414
3	10153304	A->G	+	.	.	.	Intergenic	.	.	Alu	0.172414
3	10153349	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	10153378	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
3	10153386	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
3	10153408	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
3	10153409	A->G	+	.	.	.	Intergenic	.	.	Alu	0.24
3	10153412	A->G	+	.	.	.	Intergenic	.	.	Alu	0.769231
3	10153419	A->G	+	.	.	.	Intergenic	.	.	Alu	0.296296
19	10167293	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.153846
19	10167360	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.105263
19	10167370	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.142857
19	10167469	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.272727
19	10167483	A->G	-	ENSG00000130816	DNMT1	protein_coding	Intergenic	.	.	Alu	0.166667
2	10199526	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.4
2	10199527	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.4
2	10199689	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.214286
2	10199700	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.230769
2	10200033	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.3
2	10200062	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.166667
2	10200072	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.2
2	10200085	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.583333
2	10200107	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.2
2	10200956	A->G	+	ENSG00000163009	C2orf48	lincRNA	Intergenic	.	.	Alu	0.3
2	10212868	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
2	10212878	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
2	10213355	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
2	10213361	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
2	10213373	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3125
2	10213377	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
1	10418628	A->G	+	ENSG00000142657	PGD	protein_coding	Intergenic	.	.	Alu	0.916667
19	10551453	A->G	+	ENSG00000130734	ATG4D	protein_coding	Intergenic	.	.	Alu	0.95
19	10616089	A->G	+	ENSG00000129353	SLC44A2	protein_coding	Intergenic	.	.	Alu	0.111111
2	10638670	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.2
2	10638671	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.2
2	10638888	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.285714
2	10638892	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.769231
2	10638927	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.2
2	10638931	A->G	-	ENSG00000115761	NOL10	protein_coding	Intergenic	.	.	Alu	0.454545
19	10642089	A->G	+	ENSG00000129353	SLC44A2	protein_coding	Intergenic	.	.	Alu	0.833333
19	10724004	A->G	+	ENSG00000079805	DNM2	protein_coding	Intergenic	.	.	Alu	0.25
19	10724017	A->G	+	ENSG00000079805	DNM2	protein_coding	Intergenic	.	.	Alu	0.2
5	10759840	A->G	-	ENSG00000112977	DAP	protein_coding	Intergenic	.	.	Alu	0.333333
19	10794733	A->G	+	ENSG00000079805	DNM2	protein_coding	Intergenic	.	.	Alu	0.166667
19	10933063	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.4
19	10933278	A->G	+	ENSG00000142444	TIMM29	protein_coding	Intergenic	.	.	Alu	0.133333
19	10963212	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.133333
19	10963226	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.133333
19	10963246	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.0869565
19	10963259	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.15
19	10963262	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.1
19	10963293	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.136364
19	11046845	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.166667
19	11046849	A->G	+	ENSG00000127616	SMARCA4	protein_coding	Intergenic	.	.	Alu	0.230769
10	11196796	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.0350877
10	11196814	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.0363636
10	11196839	A->G	+	ENSG00000048740	CELF2	protein_coding	Intergenic	.	.	Alu	0.0555556
6	11343349	A->G	+	ENSG00000111859	NEDD9	protein_coding	Intergenic	.	.	Alu	1
6	11343361	A->G	+	ENSG00000111859	NEDD9	protein_coding	Intergenic	.	.	Alu	1
3	11442800	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.615385
3	11442810	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.461538
3	11528650	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.8
3	11528661	A->G	+	ENSG00000197548	ATG7	protein_coding	Intergenic	.	.	Alu	0.818182
10	11554829	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.428571
10	11554932	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.272727
10	11554938	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.7
10	11555009	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.133333
10	11583320	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.05
10	11583326	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.538462
10	11583386	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.263158
10	11583387	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.1
10	11583394	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.272727
10	11583463	A->G	-	ENSG00000148429	USP6NL	protein_coding	Intergenic	.	.	Alu	0.4
12	11660349	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.09375
12	11660350	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.125
12	11660403	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.285714
12	11660404	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.666667
12	11660409	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.4
12	11660448	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0526316
12	11660449	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0571429
12	11660452	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.225806
12	11660468	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.35
12	11660478	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.428571
12	11660479	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.571429
12	11660484	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.137931
12	11660505	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0645161
12	11660519	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.5
12	11660520	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.310345
12	11660527	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.215385
12	11660562	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.539683
12	11660581	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0465116
12	11675734	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.1
12	11675739	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.130435
16	11709390	A->G	-	ENSG00000153066	TXNDC11	protein_coding	Intergenic	.	.	Alu	0.2
12	11716106	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0606061
12	11716112	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0588235
12	11716144	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.05
12	11716210	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0606061
12	11733314	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0638298
12	11733365	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0540541
12	11734335	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.129032
12	11734358	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.111111
12	11734374	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0625
12	11734392	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.194444
12	11734397	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.205128
12	11734406	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0512821
12	11734430	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0606061
12	11734431	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.09375
12	11734444	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.1
12	11734445	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0645161
12	11734447	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0882353
12	11734454	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.1
12	11734457	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0625
12	11777093	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.2
16	11788746	A->G	-	ENSG00000122299	ZC3H7A	protein_coding	Intergenic	.	.	Alu	0.142857
16	11788751	A->G	-	ENSG00000122299	ZC3H7A	protein_coding	Intergenic	.	.	Alu	0.666667
16	11788758	A->G	-	ENSG00000122299	ZC3H7A	protein_coding	Intergenic	.	.	Alu	0.466667
12	11808902	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.125
12	11808939	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0869565
12	11808993	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.15
12	11809029	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.16129
12	11809034	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0645161
12	11809044	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0652174
12	11809100	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0697674
12	11818408	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.181818
12	11818470	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.214286
12	11821356	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.0606061
8	11825355	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.230769
8	11825382	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.142857
8	11825419	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.181818
8	11825455	A->G	+	ENSG00000079459	FDFT1	protein_coding	Intergenic	.	.	Alu	0.2
19	11835316	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
12	11864996	A->G	+	ENSG00000139083	ETV6	protein_coding	Intergenic	.	.	Alu	0.941176
19	11865799	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intergenic	.	.	Alu	1
19	11896160	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.181818
19	11896174	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.181818
19	11896176	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.153846
19	11897661	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.3
19	11897685	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.153846
19	11897687	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.230769
19	11897693	A->G	+	ENSG00000198429	ZNF69	protein_coding	Intergenic	.	.	Alu	0.25
16	11911824	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.2
16	11911825	A->G	-	ENSG00000103342	GSPT1	protein_coding	Intergenic	.	.	Alu	0.166667
19	11932223	A->G	+	ENSG00000196757	ZNF700	protein_coding	Intergenic	.	.	Alu	0.5
19	12004218	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.291667
19	12004257	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.258065
19	12004259	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.466667
19	12004267	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.214286
19	12004308	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.318182
19	12004322	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.0869565
19	12004331	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.08
19	12004371	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.423077
19	12004391	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.318182
19	12004397	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intergenic	.	.	Alu	0.0833333
19	12018907	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.1
19	12018976	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.0588235
19	12019235	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.0952381
10	12026790	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.166667
10	12026801	A->G	-	ENSG00000151461	UPF2	protein_coding	Intergenic	.	.	Alu	0.133333
19	12029442	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.214286
19	12029443	A->G	+	ENSG00000197647	ZNF433	protein_coding	Intergenic	.	.	Alu	0.375
19	12036434	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.363636
6	12041234	A->G	+	ENSG00000095951	HIVEP1	protein_coding	Intergenic	.	.	Alu	0.6
6	12041244	A->G	+	ENSG00000095951	HIVEP1	protein_coding	Intergenic	.	.	Alu	0.6
6	12041269	A->G	+	ENSG00000095951	HIVEP1	protein_coding	Intergenic	.	.	Alu	0.5
6	12041301	A->G	+	ENSG00000095951	HIVEP1	protein_coding	Intergenic	.	.	Alu	0.636364
19	12041785	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.166667
19	12041847	A->G	+	ENSG00000257355	AC008770.1	protein_coding	Intergenic	.	.	Alu	0.0869565
10	12134901	A->G	+	ENSG00000065665	SEC61A2	protein_coding	Intergenic	.	.	Alu	0.4
19	12178735	A->G	+	ENSG00000196646	ZNF136	protein_coding	Intergenic	.	.	Alu	0.142857
19	12184478	A->G	+	ENSG00000196646	ZNF136	protein_coding	Intergenic	.	.	Alu	0.545455
19	12184482	A->G	+	ENSG00000196646	ZNF136	protein_coding	Intergenic	.	.	Alu	0.461538
19	12184490	A->G	+	ENSG00000196646	ZNF136	protein_coding	Intergenic	.	.	Alu	0.583333
19	12184516	A->G	+	ENSG00000196646	ZNF136	protein_coding	Intergenic	.	.	Alu	0.545455
1	12255878	A->G	+	ENSG00000048707	VPS13D	protein_coding	Intergenic	.	.	Alu	0.166667
10	12356077	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.2
10	12358250	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.133333
10	12358445	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.2
10	12373377	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.181818
10	12373394	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.363636
10	12373412	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.5
10	12373485	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.272727
10	12374084	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.15
1	12388597	A->G	+	ENSG00000048707	VPS13D	protein_coding	Intergenic	.	.	Alu	0.133333
10	12406573	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.181818
10	12406602	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.5
10	12411740	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.125
10	12435143	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.15
10	12435162	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.266667
10	12456682	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.8
10	12456692	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.727273
12	12457534	A->G	-	ENSG00000165714	BORCS5	protein_coding	Intergenic	.	.	Alu	1
12	12457547	A->G	-	ENSG00000165714	BORCS5	protein_coding	Intergenic	.	.	Alu	1
12	12457550	A->G	-	ENSG00000165714	BORCS5	protein_coding	Intergenic	.	.	Alu	1
12	12457557	A->G	-	ENSG00000165714	BORCS5	protein_coding	Intergenic	.	.	Alu	1
19	12483213	A->G	-	ENSG00000242852	ZNF709	protein_coding	Intergenic	.	.	Alu	0.0833333
19	12483273	A->G	-	ENSG00000242852	ZNF709	protein_coding	Intergenic	.	.	Alu	0.0909091
19	12483353	A->G	-	ENSG00000242852	ZNF709	protein_coding	Intergenic	.	.	Alu	0.125
19	12483362	A->G	-	ENSG00000242852	ZNF709	protein_coding	Intergenic	.	.	Alu	0.133333
19	12523203	A->G	-	ENSG00000196826	AC008758.1	protein_coding	Intergenic	.	.	Alu	0.5
19	12523204	A->G	-	ENSG00000196826	AC008758.1	protein_coding	Intergenic	.	.	Alu	0.571429
19	12523294	A->G	-	ENSG00000196826	AC008758.1	protein_coding	Intergenic	.	.	Alu	0.2
10	12560502	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.2
10	12569572	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.181818
10	12578692	A->G	+	ENSG00000183049	CAMK1D	protein_coding	Intergenic	.	.	Alu	0.7
19	12635312	A->G	+	ENSG00000188033	ZNF490	protein_coding	Intergenic	.	.	Alu	0.181818
19	12635987	A->G	-	ENSG00000188033	ZNF490	protein_coding	Intergenic	.	.	Alu	0.909091
19	12636010	A->G	-	ENSG00000188033	ZNF490	protein_coding	Intergenic	.	.	Alu	1
19	12660856	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.258065
19	12660864	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.285714
19	12660870	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.319149
19	12660880	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.272727
19	12660887	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.0416667
19	12660897	A->G	-	ENSG00000104774	MAN2B1	protein_coding	Intergenic	.	.	Alu	0.461538
19	12673688	A->G	-	ENSG00000123154	WDR83	protein_coding	Intergenic	.	.	Alu	0.181818
19	12731864	A->G	-	ENSG00000123144	TRIR	protein_coding	Intergenic	.	.	Alu	0.833333
19	12731878	A->G	-	ENSG00000123144	TRIR	protein_coding	Intergenic	.	.	Alu	0.75
19	12731897	A->G	-	ENSG00000123144	TRIR	protein_coding	Intergenic	.	.	Alu	0.105263
18	12967640	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	1
18	12967650	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.176471
18	12967659	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.117647
18	12967700	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.272727
18	12967732	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.230769
18	12967758	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.1875
18	12967767	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.294118
18	12967799	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.115385
18	12967803	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.16
18	12967807	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.3
18	12967820	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.291667
18	12967835	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.0714286
18	12967864	A->G	+	ENSG00000085415	SEH1L	protein_coding	Intergenic	.	.	Alu	0.5
10	13274308	A->G	-	.	.	.	Intergenic	.	.	Alu	0.916667
6	13648212	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.103448
6	13648221	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0769231
6	13648246	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.133333
6	13648247	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0666667
6	13648271	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0833333
6	13648278	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.25
6	13648296	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.25
6	13648308	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.444444
6	13648312	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.26087
6	13648315	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.130435
6	13648341	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.1
6	13648343	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0909091
6	13648349	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.16129
6	13648351	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.129032
6	13648419	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0571429
11	13672435	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.09375
6	13686147	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0769231
6	13686202	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0833333
6	13686212	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.321429
6	13686220	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.0740741
6	13686228	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.125
6	13686259	A->G	-	ENSG00000010017	RANBP9	protein_coding	Intergenic	.	.	Alu	0.3
11	13703915	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.428571
11	13703924	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.45
11	13703989	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.285714
11	13703994	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.157895
11	13703999	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.3
11	13704026	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.0625
11	13704027	A->G	+	ENSG00000197601	FAR1	protein_coding	Intergenic	.	.	Alu	0.1
1	13755996	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.6
1	13755997	A->G	+	ENSG00000116731	PRDM2	protein_coding	Intergenic	.	.	Alu	0.380952
19	13837503	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
19	13837517	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
19	13837543	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
19	13837721	A->G	-	.	.	.	Intergenic	.	.	Alu	0.04
19	13837884	A->G	-	.	.	.	Intergenic	.	.	Alu	0.030303
19	13837925	A->G	-	.	.	.	Intergenic	.	.	Alu	0.210526
19	13837926	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
19	13838020	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
19	13838043	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0833333
19	13838055	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0869565
19	13838060	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0909091
19	13838061	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0952381
19	13838162	A->G	-	.	.	.	Intergenic	.	.	Alu	0.357143
19	13838166	A->G	-	.	.	.	Intergenic	.	.	Alu	0.357143
19	13838188	A->G	-	.	.	.	Intergenic	.	.	Alu	0.545455
16	14599105	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.3125
16	14599108	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.133333
16	14599119	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.133333
16	14599127	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.142857
16	14599131	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.357143
16	14599207	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.181818
16	14599221	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.166667
16	14599222	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.166667
16	14599270	A->G	-	ENSG00000140694	PARN	protein_coding	Intergenic	.	.	Alu	0.153846
3	14673233	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0769231
10	14930232	A->G	-	ENSG00000152457	DCLRE1C	protein_coding	Intergenic	.	.	Alu	0.272727
3	14989907	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.133333
3	15018850	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.181818
3	15019070	A->G	+	ENSG00000177463	NR2C2	protein_coding	Intergenic	.	.	Alu	0.357143
21	15019691	A->G	-	ENSG00000180530	NRIP1	protein_coding	Intergenic	.	.	Alu	0.2
16	15030363	A->G	+	ENSG00000179889	PDXDC1	protein_coding	Intergenic	.	.	Alu	0.2
3	15248911	A->G	+	ENSG00000131375	CAPN7	protein_coding	Intergenic	.	.	Alu	0.4
6	15270820	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.384615
6	15270821	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.230769
6	15270847	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.166667
6	15298520	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.1
6	15298521	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.25
6	15298524	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.210526
19	15310248	A->G	-	ENSG00000141867	BRD4	protein_coding	Intergenic	.	.	Alu	0.166667
19	15310276	A->G	-	ENSG00000141867	BRD4	protein_coding	Intergenic	.	.	Alu	0.181818
19	15310279	A->G	-	ENSG00000141867	BRD4	protein_coding	Intergenic	.	.	Alu	0.2
19	15310499	A->G	-	ENSG00000141867	BRD4	protein_coding	Intergenic	.	.	Alu	1
19	15310505	A->G	-	ENSG00000141867	BRD4	protein_coding	Intergenic	.	.	Alu	0.3
19	15339875	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
6	15343108	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.25
6	15343109	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.117647
6	15343135	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.133333
19	15343142	A->G	+	.	.	.	Intergenic	.	.	Alu	0.928571
6	15343150	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.111111
6	15343181	A->G	+	ENSG00000008083	JARID2	protein_coding	Intergenic	.	.	Alu	0.0869565
19	15343186	A->G	+	.	.	.	Intergenic	.	.	Alu	1
19	15357781	A->G	-	ENSG00000105127	AKAP8	protein_coding	Intergenic	.	.	Alu	0.142857
19	15357782	A->G	-	ENSG00000105127	AKAP8	protein_coding	Intergenic	.	.	Alu	0.166667
19	15462687	A->G	-	ENSG00000105122	RASAL3	protein_coding	Intergenic	.	.	Alu	0.5
19	15463151	A->G	-	ENSG00000105122	RASAL3	protein_coding	Intergenic	.	.	Alu	0.111111
19	15463388	A->G	-	ENSG00000105122	RASAL3	protein_coding	Intergenic	.	.	Alu	0.9
3	15567348	A->G	-	ENSG00000131373	HACL1	protein_coding	Intergenic	.	.	Alu	0.153846
1	15688481	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.2
1	15688531	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.1875
1	15692076	A->G	+	ENSG00000116786	PLEKHM2	protein_coding	Intergenic	.	.	Alu	0.3
16	15705960	A->G	+	ENSG00000072864	NDE1	protein_coding	Intergenic	.	.	Alu	0.181818
3	15716246	A->G	-	ENSG00000206560	ANKRD28	protein_coding	Intergenic	.	.	Alu	0.12
1	15878903	A->G	+	ENSG00000065526	SPEN	protein_coding	Intergenic	.	.	Alu	0.230769
12	15901806	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.181818
12	15901845	A->G	+	ENSG00000023734	STRAP	protein_coding	Intergenic	.	.	Alu	0.285714
16	15952758	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.125
16	15952766	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0909091
16	15952774	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0512821
16	15952775	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.1
16	15952801	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0444444
16	15952815	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0555556
16	15952820	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.333333
16	15952839	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	1
16	15952844	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0384615
16	15952929	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.205128
16	15952932	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.282051
16	15952983	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0666667
16	15952997	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.184211
16	15953023	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.0512821
16	15953081	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
16	15989011	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
16	15999360	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.181818
16	15999377	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.230769
16	16011177	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.166667
17	16021273	A->G	+	ENSG00000011295	TTC19	protein_coding	Intergenic	.	.	Alu	0.3125
17	16021284	A->G	+	ENSG00000011295	TTC19	protein_coding	Intergenic	.	.	Alu	1
16	16053636	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.2
16	16053712	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.545455
17	16056440	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.0571429
16	16057279	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.4
19	16080628	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.181818
19	16080741	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.678571
19	16080764	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.137931
19	16082974	A->G	+	ENSG00000167460	TPM4	protein_coding	Intergenic	.	.	Alu	0.153846
16	16089608	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.166667
17	16107090	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.117647
17	16107091	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.117647
17	16107098	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.277778
17	16107100	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.263158
16	16122625	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.230769
16	16122626	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.230769
16	16122687	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.125
16	16122694	A->G	+	ENSG00000103222	ABCC1	protein_coding	Intergenic	.	.	Alu	0.1875
17	16154115	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.3
17	16154116	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.2
17	16154119	A->G	-	ENSG00000141027	NCOR1	protein_coding	Intergenic	.	.	Alu	0.25
19	16155880	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.2
19	16156811	A->G	+	ENSG00000196684	HSH2D	protein_coding	Intergenic	.	.	Alu	0.363636
19	16215373	A->G	+	ENSG00000072958	AP1M1	protein_coding	Intergenic	.	.	Alu	0.5
19	16215381	A->G	+	ENSG00000072958	AP1M1	protein_coding	Intergenic	.	.	Alu	0.909091
19	16215382	A->G	+	ENSG00000072958	AP1M1	protein_coding	Intergenic	.	.	Alu	0.636364
1	16281592	A->G	-	ENSG00000037637	FBXO42	protein_coding	Intergenic	.	.	Alu	0.2
1	16286025	A->G	-	ENSG00000037637	FBXO42	protein_coding	Intergenic	.	.	Alu	0.181818
17	16345390	A->G	+	ENSG00000166582	CENPV	protein_coding	Intergenic	.	.	Alu	0.818182
17	16345393	A->G	+	ENSG00000166582	CENPV	protein_coding	Intergenic	.	.	Alu	0.818182
17	16345423	A->G	+	ENSG00000166582	CENPV	protein_coding	Intergenic	.	.	Alu	0.9
1	16377465	A->G	+	ENSG00000055070	SZRD1	protein_coding	Intergenic	.	.	Alu	0.4
5	16394542	A->G	+	ENSG00000248150	LINC02150	lincRNA	Intergenic	.	.	Alu	1
19	16638215	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638369	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.214286
19	16638371	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638389	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	1
19	16638432	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.5
19	16638511	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.3125
19	16638512	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.117647
19	16638526	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.25
19	16638535	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.176471
19	16638568	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.5
19	16638574	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.294118
19	16638580	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.105263
19	16640247	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.75
19	16640270	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.714286
19	16640280	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.733333
19	16640281	A->G	-	ENSG00000267904	AC024075.1	sense_intronic	Intergenic	.	.	Alu	0.666667
19	16644258	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.153846
19	16644259	A->G	-	ENSG00000268790	AC008764.4	protein_coding	Intergenic	.	.	Alu	0.153846
6	16689451	A->G	-	ENSG00000124788	ATXN1	protein_coding	Intergenic	.	.	Alu	0.153846
11	16740502	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.461538
11	16740696	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.333333
11	16740838	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0909091
11	16740839	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.0571429
11	16740844	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.108108
11	16740930	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.166667
11	16740949	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.2
11	16740950	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.2
11	16740962	A->G	+	ENSG00000110696	C11orf58	protein_coding	Intergenic	.	.	Alu	0.230769
11	16756896	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
11	16756897	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	17081599	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.166667
19	17081798	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.363636
19	17084609	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.153846
19	17084650	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.266667
19	17084678	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.266667
19	17084762	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.105263
19	17084778	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.111111
19	17084784	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.153846
19	17084785	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.25
19	17085640	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.133333
19	17085642	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.266667
19	17095092	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	1
19	17097270	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3
19	17097276	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.363636
19	17097278	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.666667
19	17097291	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17098891	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.125
19	17098906	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.0952381
19	17099128	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.769231
19	17099154	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.714286
19	17100438	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.181818
19	17102877	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.125
19	17102960	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.166667
19	17103015	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.153846
19	17105227	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.3
19	17105470	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.2
19	17105477	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.333333
11	17131452	A->G	-	ENSG00000011405	PIK3C2A	protein_coding	Intergenic	.	.	Alu	0.166667
11	17131457	A->G	-	ENSG00000011405	PIK3C2A	protein_coding	Intergenic	.	.	Alu	0.166667
11	17131494	A->G	-	ENSG00000011405	PIK3C2A	protein_coding	Intergenic	.	.	Alu	0.2
11	17131507	A->G	-	ENSG00000011405	PIK3C2A	protein_coding	Intergenic	.	.	Alu	0.363636
19	17178348	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.4
19	17179018	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intergenic	.	.	Alu	0.5
11	17285264	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.2
11	17285694	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.772727
11	17297829	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.571429
11	17297855	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.1875
11	17297896	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.272727
11	17297906	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.5
11	17297988	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.4
11	17298003	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.214286
11	17298047	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.1
11	17305306	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.133333
11	17336500	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.307692
11	17336674	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.209302
11	17336675	A->G	+	ENSG00000070081	NUCB2	protein_coding	Intergenic	.	.	Alu	0.384615
10	17397530	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	1
10	17448741	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	0.25
10	17448754	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	0.181818
10	17448855	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	0.166667
10	17448857	A->G	-	ENSG00000148488	ST8SIA6	protein_coding	Intergenic	.	.	Alu	0.272727
16	17456440	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.2
16	17456466	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.133333
16	17456476	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.294118
16	17456487	A->G	-	ENSG00000103489	XYLT1	protein_coding	Intergenic	.	.	Alu	0.263158
19	17544045	A->G	+	ENSG00000167483	FAM129C	protein_coding	Intergenic	.	.	Alu	1
6	17645348	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.153846
6	17645372	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.210526
6	17645386	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.238095
6	17645432	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.208333
6	17655551	A->G	-	ENSG00000124789	NUP153	protein_coding	Intergenic	.	.	Alu	0.166667
20	17673436	A->G	-	ENSG00000125844	RRBP1	protein_coding	Intergenic	.	.	Alu	0.2
20	17673443	A->G	-	ENSG00000125844	RRBP1	protein_coding	Intergenic	.	.	Alu	0.666667
10	17687354	A->G	+	ENSG00000136738	STAM	protein_coding	Intergenic	.	.	Alu	0.454545
8	17997838	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.222222
8	17997839	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.157895
8	17997849	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.142857
8	17997999	A->G	+	ENSG00000078674	PCM1	protein_coding	Intergenic	.	.	Alu	0.111111
10	18156964	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.2
10	18156968	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.125
10	18156975	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.133333
10	18177419	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.2
10	18177434	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.4
10	18177511	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.166667
10	18177534	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.181818
10	18177549	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.125
10	18180711	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.2
10	18180712	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.166667
10	18186340	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.235294
10	18228169	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.25
10	18228190	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.25
10	18228208	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.363636
10	18228238	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.7
10	18228240	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.3
10	18228279	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.181818
10	18228283	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.2
10	18228309	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.7
10	18228310	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.7
10	18228315	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.416667
10	18259620	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.4
10	18259624	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.5
10	18259651	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.153846
10	18259713	A->G	+	ENSG00000165995	CACNB2	protein_coding	Intergenic	.	.	Alu	0.2
19	18272213	A->G	-	ENSG00000130518	IQCN	protein_coding	Intergenic	.	.	Alu	0.153846
X	18346037	A->G	-	ENSG00000102098	SCML2	protein_coding	Intergenic	.	.	Alu	0.272727
X	18346038	A->G	-	ENSG00000102098	SCML2	protein_coding	Intergenic	.	.	Alu	0.272727
11	18499496	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.368421
11	18499507	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.5
11	18512866	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.217391
11	18512868	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.409091
11	18512905	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.176471
11	18512906	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.176471
11	18512910	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.461538
11	18512929	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.25
11	18521429	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.28
11	18521431	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.230769
11	18521466	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.142857
11	18521471	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.333333
11	18521474	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.117647
11	18521529	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0645161
11	18521544	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0666667
11	18521593	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0540541
11	18521631	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.166667
11	18521737	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0740741
11	18521739	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.0769231
11	18521774	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.333333
11	18521809	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.2
11	18521944	A->G	-	ENSG00000074319	TSG101	protein_coding	Intergenic	.	.	Alu	0.6
20	18601454	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.6
20	18616660	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.142857
20	18616686	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.133333
10	18652653	A->G	-	ENSG00000241058	NSUN6	protein_coding	Intergenic	.	.	Alu	0.2
10	18652656	A->G	-	ENSG00000241058	NSUN6	protein_coding	Intergenic	.	.	Alu	0.266667
20	18660410	A->G	+	ENSG00000284776	AL121900.2	protein_coding	Intergenic	.	.	Alu	0.7
10	18669914	A->G	+	ENSG00000165997	ARL5B	protein_coding	Intergenic	.	.	Alu	0.916667
16	18887467	A->G	-	ENSG00000157106	SMG1	protein_coding	Intergenic	.	.	Alu	0.3
19	18909579	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.175
19	18909587	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0465116
19	18909595	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.116279
19	18909604	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0408163
19	18909608	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0566038
19	18909615	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.175
19	18909616	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	1
19	18909624	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0454545
19	18909630	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.204545
19	18909640	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0851064
19	18909656	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.0434783
19	18909750	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.25
19	18909786	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.181818
19	18911690	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.909091
19	18914802	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.2
19	18917403	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.133333
19	18917436	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.214286
19	18917437	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.357143
19	18917551	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.153846
19	18917642	A->G	-	ENSG00000105669	COPE	protein_coding	Intergenic	.	.	Alu	0.363636
1	18935801	A->G	-	ENSG00000169991	IFFO2	protein_coding	Intergenic	.	.	Alu	0.615385
1	18935805	A->G	-	ENSG00000169991	IFFO2	protein_coding	Intergenic	.	.	Alu	0.615385
1	18935806	A->G	-	ENSG00000169991	IFFO2	protein_coding	Intergenic	.	.	Alu	0.615385
9	19295585	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.117647
19	19299445	A->G	-	ENSG00000105705	SUGP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	19301692	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0869565
9	19307136	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.583333
9	19307169	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.4
9	19307197	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.142857
9	19307212	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.2
9	19307248	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.384615
9	19307274	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.3
9	19307288	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.454545
9	19307381	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.166667
9	19307677	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.25
9	19307691	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.25
9	19307711	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.166667
9	19315013	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.363636
9	19315039	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.25
9	19315040	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.416667
9	19315120	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.5
9	19321753	A->G	+	ENSG00000137145	DENND4C	protein_coding	Intergenic	.	.	Alu	0.272727
22	19379100	A->G	-	ENSG00000100084	HIRA	protein_coding	Intergenic	.	.	Alu	0.153846
22	19416356	A->G	-	ENSG00000100084	HIRA	protein_coding	Intergenic	.	.	Alu	0.4
22	19416357	A->G	-	ENSG00000100084	HIRA	protein_coding	Intergenic	.	.	Alu	0.3
19	19444680	A->G	+	ENSG00000167491	GATAD2A	protein_coding	Intergenic	.	.	Alu	0.2
12	19446551	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.272727
12	19446570	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.133333
12	19446581	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.117647
12	19446611	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.2
1	19447494	A->G	-	ENSG00000077549	CAPZB	protein_coding	Intergenic	.	.	Alu	1
1	19447502	A->G	-	ENSG00000077549	CAPZB	protein_coding	Intergenic	.	.	Alu	1
19	19473825	A->G	+	ENSG00000167491	GATAD2A	protein_coding	Intergenic	.	.	Alu	0.117647
19	19473831	A->G	+	ENSG00000167491	GATAD2A	protein_coding	Intergenic	.	.	Alu	0.1
12	19487508	A->G	+	ENSG00000139154	AEBP2	protein_coding	Intergenic	.	.	Alu	0.2
1	19600701	A->G	+	ENSG00000173436	MINOS1	protein_coding	Intergenic	.	.	Alu	1
19	19664416	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
19	19664660	A->G	+	.	.	.	Intergenic	.	.	Alu	0.416667
19	19664666	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
13	19714558	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.142857
13	19714578	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.05
13	19714580	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.1
13	19714603	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.111111
13	19714635	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.181818
13	19714643	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.25
13	19714648	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.2
13	19714713	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.2
13	19714714	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.3
13	19714732	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.2
13	19754313	A->G	-	ENSG00000121390	PSPC1	protein_coding	Intergenic	.	.	Alu	0.2
3	19952093	A->G	+	ENSG00000144566	RAB5A	protein_coding	Intergenic	.	.	Alu	0.24
13	19973524	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.181818
13	19985755	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.363636
13	19986847	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.111111
13	19986856	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.117647
13	19986874	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.142857
13	19986927	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.125
13	19986942	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.190476
13	19986950	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0909091
13	19986958	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.0869565
13	19986984	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.272727
13	19986985	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.272727
13	19986998	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.307692
13	19987510	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.153846
20	20029067	A->G	-	ENSG00000173418	NAA20	protein_coding	Intergenic	.	.	Alu	0.2
13	20045013	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.142857
13	20063256	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.142857
13	20079225	A->G	+	ENSG00000121741	ZMYM2	protein_coding	Intergenic	.	.	Alu	0.272727
2	20306800	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.818182
2	20306801	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.272727
2	20345135	A->G	-	ENSG00000055917	PUM2	protein_coding	Intergenic	.	.	Alu	0.357143
9	20375705	A->G	-	ENSG00000171843	MLLT3	protein_coding	Intergenic	.	.	Alu	0.181818
9	20375706	A->G	-	ENSG00000171843	MLLT3	protein_coding	Intergenic	.	.	Alu	0.181818
14	20452803	A->G	-	ENSG00000092094	OSGEP	protein_coding	Intergenic	.	.	Alu	0.125
6	20460902	A->G	+	ENSG00000112242	E2F3	protein_coding	Intergenic	.	.	Alu	0.6
22	20545202	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.3
6	20552083	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.6
6	20552084	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.714286
22	20559057	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.166667
22	20559095	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.105263
22	20561266	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.142857
22	20561335	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.2
22	20562103	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	1
22	20562143	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.181818
22	20562148	A->G	+	ENSG00000099917	MED15	protein_coding	Intergenic	.	.	Alu	0.166667
1	20647915	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.166667
1	20647945	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.153846
1	20647950	A->G	-	ENSG00000158828	PINK1	protein_coding	Intergenic	.	.	Alu	0.3
16	20697923	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.105263
16	20697939	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.6
16	20697940	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.8
16	20697978	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.142857
16	20697983	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	1
16	20698135	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0769231
16	20698139	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.37037
16	20698149	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0666667
16	20698154	A->G	+	ENSG00000166743	ACSM1	protein_coding	Intergenic	.	.	Alu	0.0555556
16	20739762	A->G	+	ENSG00000005187	ACSM3	protein_coding	Intergenic	.	.	Alu	0.166667
1	20751011	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.416667
1	20751012	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.333333
1	20751020	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.272727
22	20753825	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.153846
1	20758602	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.133333
22	20759092	A->G	-	ENSG00000241973	PI4KA	protein_coding	Intergenic	.	.	Alu	0.272727
1	20760115	A->G	-	ENSG00000127483	HP1BP3	protein_coding	Intergenic	.	.	Alu	0.272727
13	21003378	A->G	-	ENSG00000150457	LATS2	protein_coding	Intergenic	.	.	Alu	0.166667
13	21003392	A->G	-	ENSG00000150457	LATS2	protein_coding	Intergenic	.	.	Alu	0.166667
18	21027116	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.25
18	21027118	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.25
18	21027165	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.6
18	21027194	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.181818
18	21027230	A->G	-	ENSG00000067900	ROCK1	protein_coding	Intergenic	.	.	Alu	0.125
17	21040961	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.117647
17	21041022	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.16129
17	21041023	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.0645161
17	21041038	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.0740741
17	21041155	A->G	-	ENSG00000124422	USP22	protein_coding	Intergenic	.	.	Alu	0.0666667
1	21081739	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.2
1	21081844	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.2
6	21114008	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	1
6	21114061	A->G	+	ENSG00000145996	CDKAL1	protein_coding	Intergenic	.	.	Alu	0.181818
1	21130167	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.12
1	21130179	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.0869565
1	21130192	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.111111
19	21146260	A->G	+	ENSG00000196705	ZNF431	protein_coding	Intergenic	.	.	Alu	0.666667
19	21146263	A->G	+	ENSG00000196705	ZNF431	protein_coding	Intergenic	.	.	Alu	0.166667
19	21146289	A->G	+	ENSG00000196705	ZNF431	protein_coding	Intergenic	.	.	Alu	0.538462
1	21150733	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.214286
1	21150751	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.166667
1	21151350	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.235294
1	21151371	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.136364
1	21151377	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.1
1	21151403	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.214286
1	21151510	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.3
1	21158236	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	1
1	21158273	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.333333
1	21158297	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.136364
1	21158300	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.5
1	21158351	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.272727
1	21158352	A->G	-	ENSG00000075151	EIF4G3	protein_coding	Intergenic	.	.	Alu	0.181818
19	21180896	A->G	+	ENSG00000196705	ZNF431	protein_coding	Intergenic	.	.	Alu	0.133333
19	21316168	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.153846
19	21316169	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.153846
19	21316199	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	1
19	21316206	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.153846
19	21316257	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.181818
19	21316344	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.3
19	21316377	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.142857
19	21316398	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.142857
19	21316399	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.214286
19	21322331	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.0909091
19	21322334	A->G	-	ENSG00000182141	ZNF708	protein_coding	Intergenic	.	.	Alu	0.181818
13	21395599	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	1
13	21395772	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.454545
13	21414391	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.111111
13	21414576	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.818182
13	21414643	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.2
16	21424646	A->G	-	ENSG00000169246	NPIPB3	protein_coding	Intergenic	.	.	Alu	0.25
16	21424655	A->G	-	ENSG00000169246	NPIPB3	protein_coding	Intergenic	.	.	Alu	0.25
16	21424665	A->G	-	ENSG00000169246	NPIPB3	protein_coding	Intergenic	.	.	Alu	0.142857
13	21426673	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.2
13	21426874	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.117647
13	21426880	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.111111
13	21432261	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.181818
13	21432297	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.181818
13	21432415	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.461538
13	21441458	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.304348
13	21441459	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.619048
13	21441518	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0833333
13	21441524	A->G	-	ENSG00000180776	ZDHHC20	protein_coding	Intergenic	.	.	Alu	0.0869565
19	21445693	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.153846
19	21445700	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.230769
19	21445760	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.333333
19	21445765	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intergenic	.	.	Alu	0.181818
14	21446426	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.333333
14	21446504	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.133333
14	21446557	A->G	-	ENSG00000100888	CHD8	protein_coding	Intergenic	.	.	Alu	0.461538
13	21549031	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.2
13	21549064	A->G	-	ENSG00000165487	MICU2	protein_coding	Intergenic	.	.	Alu	0.545455
10	21657216	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.2
10	21657343	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.153846
10	21660672	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.307692
10	21660687	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.115385
10	21660688	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.0833333
10	21660721	A->G	+	ENSG00000078403	MLLT10	protein_coding	Intergenic	.	.	Alu	0.636364
19	21760889	A->G	-	ENSG00000197020	ZNF100	protein_coding	Intergenic	.	.	Alu	0.1875
19	21760895	A->G	-	ENSG00000197020	ZNF100	protein_coding	Intergenic	.	.	Alu	0.3
1	21780839	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.538462
1	21780853	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.4375
1	21780906	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.181818
1	21780977	A->G	-	ENSG00000090686	USP48	protein_coding	Intergenic	.	.	Alu	0.666667
19	21820942	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.105263
19	21820971	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.1875
19	21821034	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.277778
19	21821062	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.166667
19	21821218	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.0869565
19	21821238	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.166667
19	21821284	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.0909091
19	21821300	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.3
19	21823705	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.846154
19	21823706	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.5
22	21834051	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.333333
19	21835450	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.181818
19	21835465	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.153846
19	21835522	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.315789
19	21835526	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.1
19	21835528	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.0952381
19	21835531	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.263158
19	21835533	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.1875
19	21835537	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.125
19	21835558	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.1
19	21835561	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.2
19	21835589	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.166667
19	21835592	A->G	-	ENSG00000198521	ZNF43	protein_coding	Intergenic	.	.	Alu	0.333333
16	21860948	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.642857
16	21860949	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.333333
16	21860988	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.384615
22	21863378	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.142857
22	21863399	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.315789
22	21863405	A->G	-	ENSG00000100030	MAPK1	protein_coding	Intergenic	.	.	Alu	0.75
16	21864190	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.222222
16	21864322	A->G	-	ENSG00000185864	NPIPB4	protein_coding	Intergenic	.	.	Alu	0.230769
10	21949643	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.272727
10	21962560	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.125
10	21968608	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.4
10	21985335	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.307692
10	21985346	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.230769
10	21985347	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.230769
10	21985355	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.210526
10	21985361	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.157895
10	21985378	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.111111
10	21985382	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.0740741
10	21985414	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.222222
10	21985422	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.1
10	21985442	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.117647
10	21985452	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.647059
10	21985453	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.294118
10	21985476	A->G	-	ENSG00000136770	DNAJC1	protein_coding	Intergenic	.	.	Alu	0.117647
1	22062629	A->G	+	ENSG00000230068	CDC42-IT1	sense_intronic	Intergenic	.	.	Alu	0.125
1	22062651	A->G	+	ENSG00000230068	CDC42-IT1	sense_intronic	Intergenic	.	.	Alu	0.137931
1	22062708	A->G	+	ENSG00000230068	CDC42-IT1	sense_intronic	Intergenic	.	.	Alu	0.0909091
1	22062710	A->G	+	ENSG00000230068	CDC42-IT1	sense_intronic	Intergenic	.	.	Alu	0.0909091
1	22073317	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.666667
1	22073360	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.142857
1	22073392	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0909091
1	22073418	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0740741
1	22073419	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.392857
1	22073526	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0689655
1	22073528	A->G	+	ENSG00000070831	CDC42	protein_coding	Intergenic	.	.	Alu	0.0645161
12	22505405	A->G	-	ENSG00000111731	C2CD5	protein_coding	Intergenic	.	.	Alu	0.444444
8	22530655	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.461538
8	22530703	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.153846
8	22530717	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.25
8	22530721	A->G	+	ENSG00000120910	PPP3CC	protein_coding	Intergenic	.	.	Alu	0.818182
8	22617076	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.357143
8	22617084	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.176471
8	22617093	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	1
8	22617094	A->G	-	ENSG00000158941	CCAR2	protein_coding	Intergenic	.	.	Alu	0.666667
15	22848780	A->G	+	ENSG00000140157	NIPA2	protein_coding	Intergenic	.	.	Alu	0.2
18	23004907	A->G	+	ENSG00000101773	RBBP8	protein_coding	Intergenic	.	.	Alu	1
1	23037236	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.538462
1	23037245	A->G	+	ENSG00000004487	KDM1A	protein_coding	Intergenic	.	.	Alu	0.571429
14	23082505	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.15
14	23082521	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.210526
14	23082530	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.133333
14	23082582	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.272727
14	23082648	A->G	-	ENSG00000100813	ACIN1	protein_coding	Intergenic	.	.	Alu	0.333333
1	23154417	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	23154440	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	23154445	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	23154457	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.142857
1	23154464	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.833333
1	23154505	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.615385
1	23154525	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	1
1	23154572	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.25
1	23154573	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	23154783	A->G	-	ENSG00000169641	LUZP1	protein_coding	Intergenic	.	.	Alu	0.5
18	23161871	A->G	+	ENSG00000134508	CABLES1	protein_coding	Intergenic	.	.	Alu	0.25
18	23161905	A->G	+	ENSG00000134508	CABLES1	protein_coding	Intergenic	.	.	Alu	0.181818
22	23195514	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.0909091
22	23199813	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.5
22	23199836	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.222222
22	23200038	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.3
22	23200075	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.2
3	23242831	A->G	+	ENSG00000182247	UBE2E2	protein_coding	Intergenic	.	.	Alu	0.166667
3	23242910	A->G	+	ENSG00000182247	UBE2E2	protein_coding	Intergenic	.	.	Alu	0.166667
3	23242939	A->G	+	ENSG00000182247	UBE2E2	protein_coding	Intergenic	.	.	Alu	1
19	23274988	A->G	-	.	.	.	Intergenic	.	.	Alu	0.916667
22	23296316	A->G	+	ENSG00000186716	BCR	protein_coding	Intergenic	.	.	Alu	0.166667
1	23333944	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.0555556
1	23333999	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.5
1	23334003	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.125
1	23334012	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.666667
1	23334024	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	1
1	23334115	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.125
1	23334117	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.142857
1	23334127	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.0909091
1	23334160	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.117647
1	23334193	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.238095
1	23334203	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.0869565
1	23334334	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.0833333
1	23334441	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.136364
1	23334442	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.0952381
1	23334486	A->G	-	ENSG00000125944	HNRNPR	protein_coding	Intergenic	.	.	Alu	0.153846
1	23418507	A->G	-	ENSG00000204219	TCEA3	protein_coding	Intergenic	.	.	Alu	1
1	23418515	A->G	-	ENSG00000204219	TCEA3	protein_coding	Intergenic	.	.	Alu	1
18	23466610	A->G	+	ENSG00000101782	RIOK3	protein_coding	Intergenic	.	.	Alu	0.2
18	23466616	A->G	+	ENSG00000101782	RIOK3	protein_coding	Intergenic	.	.	Alu	0.181818
16	23473461	A->G	-	ENSG00000103365	GGA2	protein_coding	Intergenic	.	.	Alu	0.117647
7	23515394	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.1
7	23515408	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.125
7	23515825	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.6
7	23518444	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.2
7	23518524	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.2
7	23518546	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.1875
7	23518846	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.3
7	23518891	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.181818
7	23520785	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0882353
7	23520837	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.130435
7	23520869	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.0769231
7	23520948	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.25
7	23520966	A->G	-	ENSG00000164548	TRA2A	protein_coding	Intergenic	.	.	Alu	0.125
18	23523602	A->G	+	ENSG00000141452	RMC1	protein_coding	Intergenic	.	.	Alu	0.153846
22	23648383	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.166667
22	23657035	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.333333
22	23657264	A->G	-	ENSG00000228315	GUSBP11	processed_transcript	Intergenic	.	.	Alu	0.636364
22	23746723	A->G	-	ENSG00000187792	ZNF70	protein_coding	Intergenic	.	.	Alu	0.3
2	23769781	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.4
2	23779316	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.666667
2	23779340	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.307692
2	23779343	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.25
2	23779447	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.4
2	23779448	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.5
2	23781537	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.5
2	23781541	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.181818
2	23781553	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
2	23781565	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
2	23781582	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
2	23781602	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.333333
2	23781915	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.230769
2	23781941	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23781951	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.181818
2	23781957	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.363636
2	23782044	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.15
2	23782089	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.1875
2	23782090	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.125
3	23817218	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.153846
3	23817233	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	23817342	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.111111
3	23817343	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.08
22	23821938	A->G	+	ENSG00000099956	SMARCB1	protein_coding	Intergenic	.	.	Alu	0.142857
3	23833741	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.166667
3	23833742	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.166667
3	23833763	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.2
3	23833807	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.142857
2	23834234	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.142857
2	23834273	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.3
2	23841004	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.125
2	23845609	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.222222
2	23845637	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.0487805
2	23845672	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.454545
2	23845677	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.351351
2	23845734	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.153846
2	23845744	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.238095
2	23845749	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.125
2	23845762	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.4375
2	23845779	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.230769
3	23846557	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.1
3	23846621	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.0416667
3	23854082	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.166667
3	23854135	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.454545
3	23854147	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.285714
3	23854164	A->G	+	ENSG00000170142	UBE2E1	protein_coding	Intergenic	.	.	Alu	0.25
2	23857923	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.3
16	23873223	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.357143
16	23873249	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.25
16	23873250	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.375
16	23873279	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.363636
16	23873363	A->G	+	ENSG00000166501	PRKCB	protein_coding	Intergenic	.	.	Alu	0.1
2	23899861	A->G	-	ENSG00000119778	ATAD2B	protein_coding	Intergenic	.	.	Alu	0.214286
3	23953287	A->G	+	ENSG00000174738	NR1D2	protein_coding	Intergenic	.	.	Alu	0.363636
2	23981404	A->G	+	ENSG00000173960	UBXN2A	protein_coding	Intergenic	.	.	Alu	0.142857
19	24055158	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.857143
19	24055396	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.6
19	24061882	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.461538
19	24061883	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.384615
19	24061938	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.375
19	24061942	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.105263
19	24069446	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.2
19	24069841	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	1
19	24069845	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	1
19	24069858	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.615385
19	24069867	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.333333
19	24069888	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.538462
19	24080895	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.416667
19	24082458	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.181818
19	24082459	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.272727
19	24082503	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.230769
2	24089854	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.363636
2	24089855	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.818182
2	24089864	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.4
2	24089946	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.25
19	24090001	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.272727
2	24090002	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.142857
19	24090002	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.545455
19	24090010	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.3
2	24090019	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.4
2	24090040	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
19	24090163	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.333333
2	24090424	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.4
2	24090425	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
2	24090437	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.235294
2	24090463	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.111111
2	24090469	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.0952381
2	24090490	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.111111
19	24091184	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.181818
19	24091219	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.333333
2	24092320	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.181818
2	24092455	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.153846
2	24092456	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.214286
2	24092495	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.266667
2	24092507	A->G	+	ENSG00000219626	FAM228B	protein_coding	Intergenic	.	.	Alu	0.2
19	24097634	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.166667
19	24097660	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.125
19	24097661	A->G	+	ENSG00000213096	ZNF254	protein_coding	Intergenic	.	.	Alu	0.117647
X	24162107	A->G	+	ENSG00000005889	ZFX	protein_coding	Intergenic	.	.	Alu	0.4
14	24170152	A->G	+	.	.	.	Intergenic	.	.	Alu	0.714286
14	24170153	A->G	+	.	.	.	Intergenic	.	.	Alu	0.571429
14	24170182	A->G	+	.	.	.	Intergenic	.	.	Alu	0.578947
14	24170806	A->G	+	.	.	.	Intergenic	.	.	Alu	0.235294
14	24170815	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
14	24170938	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
14	24170956	A->G	+	.	.	.	Intergenic	.	.	Alu	0.55
14	24170976	A->G	+	.	.	.	Intergenic	.	.	Alu	1
14	24170977	A->G	+	.	.	.	Intergenic	.	.	Alu	0.212121
14	24170979	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0555556
14	24170987	A->G	+	.	.	.	Intergenic	.	.	Alu	0.047619
14	24170988	A->G	+	.	.	.	Intergenic	.	.	Alu	0.190476
14	24170991	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0714286
14	24171017	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0714286
14	24171018	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0847458
14	24171027	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0925926
14	24171031	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
14	24171034	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0363636
14	24171039	A->G	+	.	.	.	Intergenic	.	.	Alu	0.836364
14	24171040	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
14	24171058	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
14	24171059	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0701754
14	24171078	A->G	+	.	.	.	Intergenic	.	.	Alu	1
14	24171115	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0266667
14	24171150	A->G	+	.	.	.	Intergenic	.	.	Alu	0.150943
14	24212512	A->G	-	ENSG00000254505	CHMP4A	protein_coding	Intergenic	.	.	Alu	0.12
2	24337555	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.2
2	24337622	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.115385
2	24337623	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.115385
2	24337764	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.1875
2	24346967	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.230769
2	24346976	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.272727
2	24346993	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.25
2	24347000	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.142857
2	24347059	A->G	-	ENSG00000198399	ITSN2	protein_coding	Intergenic	.	.	Alu	0.4
22	24423173	A->G	+	ENSG00000128271	ADORA2A	protein_coding	Intergenic	.	.	Alu	1
2	24514167	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.4
2	24514206	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.181818
2	24514207	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.4
2	24523485	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.333333
2	24523495	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.133333
2	24523678	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.227273
2	24523716	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.117647
2	24523717	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.111111
2	24523727	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.25
2	24523740	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.117647
2	24523805	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.272727
2	24547740	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.2
2	24547747	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	1
2	24547842	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.142857
2	24586340	A->G	+	ENSG00000084676	NCOA1	protein_coding	Intergenic	.	.	Alu	0.181818
6	24710363	A->G	-	ENSG00000112308	C6orf62	protein_coding	Intergenic	.	.	Alu	0.166667
1	24747974	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.181818
1	24760311	A->G	+	ENSG00000169504	CLIC4	protein_coding	Intergenic	.	.	Alu	0.181818
15	24967521	A->G	+	ENSG00000273173	SNURF	protein_coding	Intergenic	.	.	Alu	0.153846
15	24980519	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intergenic	.	.	Alu	0.166667
15	24980564	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intergenic	.	.	Alu	0.25
15	24980574	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intergenic	.	.	Alu	0.461538
15	24980626	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intergenic	.	.	Alu	0.133333
15	24980633	A->G	+	ENSG00000214265	AC124312.1	protein_coding	Intergenic	.	.	Alu	0.25
8	25225585	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.272727
12	25231213	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0833333
12	25231226	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.16
12	25231240	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.153846
12	25231250	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.222222
12	25231256	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0666667
12	25231266	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0909091
12	25231279	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.0714286
12	25231280	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.111111
12	25231305	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.12
12	25231314	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.434783
12	25231324	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.181818
12	25231355	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.1
12	25231356	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.105263
12	25231364	A->G	-	ENSG00000133703	KRAS	protein_coding	Intergenic	.	.	Alu	0.235294
8	25254514	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.125
8	25254648	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.2
8	25254654	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.277778
8	25254677	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.2
8	25254681	A->G	+	ENSG00000147459	DOCK5	protein_coding	Intergenic	.	.	Alu	0.272727
13	25282770	A->G	-	ENSG00000139505	MTMR6	protein_coding	Intergenic	.	.	Alu	0.2
13	25306373	A->G	+	ENSG00000139496	NUP58	protein_coding	Intergenic	.	.	Alu	0.0645161
13	25306376	A->G	+	ENSG00000139496	NUP58	protein_coding	Intergenic	.	.	Alu	0.0714286
1	25354485	A->G	+	ENSG00000183726	TMEM50A	protein_coding	Intergenic	.	.	Alu	0.166667
20	25366404	A->G	-	ENSG00000100997	ABHD12	protein_coding	Intergenic	.	.	Alu	0.2
15	25431376	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.166667
15	25431481	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.181818
15	25431615	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.153846
15	25433251	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.115385
15	25433322	A->G	-	ENSG00000114062	UBE3A	protein_coding	Intergenic	.	.	Alu	0.25
1	25438831	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.2
1	25440717	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	25451786	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.2
1	25453408	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.4
1	25453409	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.272727
1	25453452	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.666667
1	25453584	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.6
1	25453645	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.133333
1	25453647	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.357143
1	25480811	A->G	+	ENSG00000204178	MACO1	protein_coding	Intergenic	.	.	Alu	0.4
3	25661164	A->G	-	ENSG00000077097	TOP2B	protein_coding	Intergenic	.	.	Alu	0.0731707
3	25661249	A->G	-	ENSG00000077097	TOP2B	protein_coding	Intergenic	.	.	Alu	0.08
3	25760850	A->G	+	ENSG00000151092	NGLY1	protein_coding	Intergenic	.	.	Alu	0.166667
15	25777811	A->G	-	ENSG00000206190	ATP10A	protein_coding	Intergenic	.	.	Alu	0.133333
15	25777835	A->G	-	ENSG00000206190	ATP10A	protein_coding	Intergenic	.	.	Alu	0.153846
15	25777893	A->G	-	ENSG00000206190	ATP10A	protein_coding	Intergenic	.	.	Alu	0.2
1	25895138	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.2
1	25895165	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.125
1	25895199	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.454545
1	25895214	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.2
1	25895241	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.2
1	25895267	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.235294
1	25895301	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.266667
1	25895311	A->G	-	ENSG00000117632	STMN1	protein_coding	Intergenic	.	.	Alu	0.666667
2	26041462	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.190476
2	26041463	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.15
2	26041784	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.166667
2	26069456	A->G	+	ENSG00000084733	RAB10	protein_coding	Intergenic	.	.	Alu	0.8125
7	26208080	A->G	+	ENSG00000122565	CBX3	protein_coding	Intergenic	.	.	Alu	0.4375
7	26208106	A->G	+	ENSG00000122565	CBX3	protein_coding	Intergenic	.	.	Alu	0.291667
7	26208126	A->G	+	ENSG00000122565	CBX3	protein_coding	Intergenic	.	.	Alu	0.428571
8	26306356	A->G	+	ENSG00000221914	PPP2R2A	protein_coding	Intergenic	.	.	Alu	0.153846
10	26476372	A->G	+	ENSG00000077420	APBB1IP	protein_coding	Intergenic	.	.	Alu	0.454545
1	26715951	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.178571
1	26715952	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.103448
1	26715987	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	26715990	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0740741
1	26716029	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.1
1	26716044	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0869565
1	26716045	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.136364
1	26716046	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0833333
1	26716054	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0769231
1	26716056	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0740741
1	26716059	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.148148
1	26716063	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.08
1	26716085	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	1
1	26716086	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.172414
1	26716095	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.12
1	26716099	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0833333
1	26716138	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.272727
1	26716156	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.12
1	26716177	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0566038
1	26716185	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0615385
1	26719991	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.3125
1	26720006	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.230769
1	26720089	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.25
1	26720124	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0833333
1	26720131	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.130435
1	26720144	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0869565
1	26720177	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0909091
1	26720186	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0740741
1	26720206	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.216216
1	26720231	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.107143
1	26720818	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.125
1	26736258	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.666667
1	26736276	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	26736301	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.230769
1	26736308	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.166667
1	26736605	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0606061
1	26736611	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0588235
1	26736615	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.0625
1	26736679	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.666667
1	26736782	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.153846
1	26743734	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	26765894	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.25
1	26765921	A->G	+	ENSG00000117713	ARID1A	protein_coding	Intergenic	.	.	Alu	0.181818
10	26773313	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.466667
10	26773339	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.133333
10	26773340	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.357143
10	26773350	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.1875
10	26851298	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.166667
10	26853677	A->G	-	ENSG00000136754	ABI1	protein_coding	Intergenic	.	.	Alu	0.230769
12	27039269	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.636364
12	27039409	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.333333
12	27039414	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0869565
12	27039431	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.153846
12	27039432	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.892857
12	27039435	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.0714286
12	27039482	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.653846
12	27039714	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.181818
12	27039730	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.166667
12	27039780	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.75
12	27039790	A->G	+	ENSG00000152944	MED21	protein_coding	Intergenic	.	.	Alu	0.384615
10	27125779	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.25
10	27125789	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.0869565
10	27125805	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.478261
10	27125815	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.130435
10	27125821	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.25
10	27125936	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.272727
10	27125949	A->G	-	ENSG00000136758	YME1L1	protein_coding	Intergenic	.	.	Alu	0.2
6	27128156	A->G	-	ENSG00000124635	HIST1H2BJ	protein_coding	Intergenic	.	.	Alu	0.214286
6	27128192	A->G	-	ENSG00000124635	HIST1H2BJ	protein_coding	Intergenic	.	.	Alu	0.133333
13	27141091	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.2
13	27141092	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.133333
13	27141112	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.125
13	27141127	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.153846
13	27141176	A->G	-	ENSG00000152484	USP12	protein_coding	Intergenic	.	.	Alu	0.105263
6	27142816	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
17	27298013	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.166667
17	27298045	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.5
17	27298046	A->G	+	ENSG00000109046	WSB1	protein_coding	Intergenic	.	.	Alu	0.4
1	27344830	A->G	+	ENSG00000142765	SYTL1	protein_coding	Intergenic	.	.	Alu	0.25
1	27344833	A->G	+	ENSG00000142765	SYTL1	protein_coding	Intergenic	.	.	Alu	0.2
2	27345835	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.157895
2	27345858	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.142857
2	27345987	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.111111
2	27345988	A->G	-	ENSG00000115207	GTF3C2	protein_coding	Intergenic	.	.	Alu	0.666667
1	27457097	A->G	-	ENSG00000158195	WASF2	protein_coding	Intergenic	.	.	Alu	0.916667
1	27457124	A->G	-	ENSG00000158195	WASF2	protein_coding	Intergenic	.	.	Alu	0.916667
1	27818128	A->G	+	ENSG00000117758	STX12	protein_coding	Intergenic	.	.	Alu	0.105263
1	27878007	A->G	+	ENSG00000130775	THEMIS2	protein_coding	Intergenic	.	.	Alu	0.6
1	27878030	A->G	+	ENSG00000130775	THEMIS2	protein_coding	Intergenic	.	.	Alu	0.538462
1	27881433	A->G	+	ENSG00000130775	THEMIS2	protein_coding	Intergenic	.	.	Alu	0.454545
1	27881434	A->G	+	ENSG00000130775	THEMIS2	protein_coding	Intergenic	.	.	Alu	0.454545
22	27910062	A->G	-	ENSG00000180957	PITPNB	protein_coding	Intergenic	.	.	Alu	0.2
10	28092658	A->G	-	ENSG00000150054	MPP7	protein_coding	Intergenic	.	.	Alu	0.142857
13	28092982	A->G	-	ENSG00000122025	FLT3	protein_coding	Intergenic	.	.	Alu	0.230769
13	28146887	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28146896	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.142857
13	28146933	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.517241
13	28146964	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0789474
13	28146965	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.111111
13	28146969	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0555556
13	28152374	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.25
13	28152398	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28152406	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.230769
13	28188521	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0625
13	28188543	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	1
13	28188552	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.666667
13	28189351	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.2
13	28190495	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.153846
13	28190528	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.545455
13	28193478	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0606061
13	28193486	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.176471
13	28193487	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.181818
13	28193492	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.195122
13	28193508	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.1
13	28193513	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.119048
13	28193517	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.18
13	28193522	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.173077
13	28193532	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.175
13	28193596	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0689655
13	28193622	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.166667
13	28193663	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0487805
13	28193688	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.163265
13	28193693	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0425532
13	28193695	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.12766
13	28193937	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.285714
13	28193971	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0833333
13	28193992	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.136364
13	28193993	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0833333
13	28194001	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.130435
13	28194036	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.529412
13	28194037	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.611111
13	28194078	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.193548
13	28194102	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.047619
13	28194112	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.047619
13	28194114	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.152174
13	28198159	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	1
13	28198165	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.533333
13	28198166	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	1
13	28198230	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	1
13	28198231	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.470588
13	28198243	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.571429
13	28205657	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.333333
13	28205678	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.105263
13	28205722	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0645161
13	28205736	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.135135
13	28205750	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.121212
13	28216925	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0769231
13	28216967	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.0740741
13	28264448	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.454545
13	28264460	A->G	+	ENSG00000152520	PAN3	protein_coding	Intergenic	.	.	Alu	0.615385
1	28415055	A->G	+	ENSG00000204138	PHACTR4	protein_coding	Intergenic	.	.	Alu	0.4
1	28415096	A->G	+	ENSG00000204138	PHACTR4	protein_coding	Intergenic	.	.	Alu	0.142857
1	28415100	A->G	+	ENSG00000204138	PHACTR4	protein_coding	Intergenic	.	.	Alu	0.333333
1	28415216	A->G	+	ENSG00000204138	PHACTR4	protein_coding	Intergenic	.	.	Alu	0.166667
1	28481518	A->G	+	ENSG00000204138	PHACTR4	protein_coding	Intergenic	.	.	Alu	0.285714
10	28538311	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.103448
10	28538319	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0571429
10	28538335	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0606061
10	28538357	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.185185
10	28538381	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0571429
10	28538405	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.103448
10	28538406	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.55
10	28538435	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.152542
10	28538452	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0357143
10	28538461	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0634921
10	28538462	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.15873
10	28538467	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0298507
10	28538468	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0606061
10	28538471	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.666667
10	28538474	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.666667
10	28538488	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0925926
10	28538492	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0769231
10	28538497	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.218182
10	28538534	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.06
10	28538634	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0327869
10	28538665	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0985915
10	28538676	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0294118
10	28538704	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0410959
10	28538708	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.209877
10	28538711	A->G	+	ENSG00000095787	WAC	protein_coding	Intergenic	.	.	Alu	0.0853659
1	28544442	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
1	28544444	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
17	28566423	A->G	-	ENSG00000087111	PIGS	protein_coding	Intergenic	.	.	Alu	0.636364
17	28566428	A->G	-	ENSG00000087111	PIGS	protein_coding	Intergenic	.	.	Alu	0.75
17	28566563	A->G	-	ENSG00000087111	PIGS	protein_coding	Intergenic	.	.	Alu	0.3
17	28568137	A->G	-	ENSG00000087111	PIGS	protein_coding	Intergenic	.	.	Alu	0.166667
14	28593411	A->G	-	ENSG00000258175	LINC02300	lincRNA	Intergenic	.	.	Alu	0.8
14	28593441	A->G	-	ENSG00000258175	LINC02300	lincRNA	Intergenic	.	.	Alu	0.2
16	28618310	A->G	-	ENSG00000196502	SULT1A1	protein_coding	Intergenic	.	.	Alu	0.272727
16	28618311	A->G	-	ENSG00000196502	SULT1A1	protein_coding	Intergenic	.	.	Alu	0.272727
17	28667250	A->G	+	ENSG00000109111	SUPT6H	protein_coding	Intergenic	.	.	Alu	1
17	28667256	A->G	+	ENSG00000109111	SUPT6H	protein_coding	Intergenic	.	.	Alu	0.142857
1	28700112	A->G	+	ENSG00000162419	GMEB1	protein_coding	Intergenic	.	.	Alu	0.166667
1	28700403	A->G	+	ENSG00000162419	GMEB1	protein_coding	Intergenic	.	.	Alu	0.25
17	28722308	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.567568
17	28722320	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intergenic	.	.	Alu	0.205882
2	28764268	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.272727
2	28764410	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.133333
2	28764435	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.222222
2	28764743	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.166667
2	28764744	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.153846
2	28772169	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.2
2	28772188	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.181818
2	28784733	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.227273
2	28784758	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0740741
2	28784773	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.166667
2	28784805	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0689655
2	28784809	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.0833333
2	28784813	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.217391
2	28784814	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.217391
2	28784936	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.130435
2	28786584	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.444444
2	28786624	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.195652
2	28786641	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.326531
2	28786660	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.263158
2	28786695	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.2
2	28786696	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.166667
2	28786720	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.166667
17	28787962	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.2
2	28792485	A->G	+	ENSG00000213639	PPP1CB	protein_coding	Intergenic	.	.	Alu	0.04
17	28797063	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.272727
22	28797559	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.3
22	28797564	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.4
22	28797589	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.363636
22	28798401	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.277778
22	28798405	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.444444
22	28798406	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.222222
22	28798453	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0810811
22	28798486	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0540541
22	28798488	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0606061
22	28798502	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0666667
22	28798512	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0625
22	28798516	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.133333
22	28798536	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	1
22	28798551	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.166667
22	28798848	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.1
22	28798852	A->G	-	ENSG00000100219	XBP1	protein_coding	Intergenic	.	.	Alu	0.0338983
17	28823907	A->G	-	ENSG00000173065	FAM222B	protein_coding	Intergenic	.	.	Alu	0.181818
16	28839642	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
2	28859071	A->G	-	ENSG00000171103	TRMT61B	protein_coding	Intergenic	.	.	Alu	0.181818
1	28891902	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.666667
1	28891926	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.4
1	28892038	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.2
1	28892042	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.5
1	28892043	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.5
2	28939960	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.454545
2	28939986	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.416667
2	28940044	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.2
2	28940053	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.5
2	28940067	A->G	+	ENSG00000163811	WDR43	protein_coding	Intergenic	.	.	Alu	0.454545
16	28958319	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	Intergenic	.	.	Alu	0.4375
1	29054580	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.666667
1	29054594	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.125
1	29054649	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.2
1	29057354	A->G	+	ENSG00000159023	EPB41	protein_coding	Intergenic	.	.	Alu	0.2
1	29173502	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.714286
1	29173549	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.722222
1	29173565	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.4
1	29177392	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intergenic	.	.	Alu	0.107143
22	29198198	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
22	29286560	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.333333
22	29286607	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.166667
22	29286619	A->G	+	ENSG00000182944	EWSR1	protein_coding	Intergenic	.	.	Alu	0.25
16	29391000	A->G	+	ENSG00000254206	NPIPB11	protein_coding	Intergenic	.	.	Alu	0.461538
16	29410733	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
16	29410741	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
16	29420179	A->G	-	.	.	.	Intergenic	.	.	Alu	0.875
16	29422704	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
16	29422726	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
16	29424226	A->G	-	.	.	.	Intergenic	.	.	Alu	0.357143
16	29424232	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
16	29424240	A->G	-	.	.	.	Intergenic	.	.	Alu	0.357143
16	29424241	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
17	29427481	A->G	+	ENSG00000160551	TAOK1	protein_coding	Intergenic	.	.	Alu	0.2
16	29512489	A->G	-	.	.	.	Intergenic	.	.	Alu	0.08
13	29588571	A->G	-	ENSG00000139514	SLC7A1	protein_coding	Intergenic	.	.	Alu	0.111111
13	29588606	A->G	-	ENSG00000139514	SLC7A1	protein_coding	Intergenic	.	.	Alu	0.166667
16	29908579	A->G	-	ENSG00000174939	ASPHD1	protein_coding	Intergenic	.	.	Alu	0.642857
8	30165655	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.266667
8	30165663	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.325581
8	30165664	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.276596
8	30166895	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.105263
8	30167181	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.0769231
8	30167185	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.413793
8	30167211	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.25
8	30167245	A->G	+	ENSG00000104671	DCTN6	protein_coding	Intergenic	.	.	Alu	0.727273
7	30316027	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.25
7	30316033	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.117647
7	30316039	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.555556
7	30316102	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.153846
7	30316103	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.25
7	30316124	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.25
7	30316278	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.166667
7	30324429	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.047619
7	30324438	A->G	+	ENSG00000180233	ZNRF2	protein_coding	Intergenic	.	.	Alu	0.0487805
13	30357182	A->G	-	ENSG00000238121	LINC00426	lincRNA	Intergenic	.	.	Alu	1
17	30486469	A->G	+	ENSG00000108587	GOSR1	protein_coding	Intergenic	.	.	Alu	0.153846
17	30486474	A->G	+	ENSG00000108587	GOSR1	protein_coding	Intergenic	.	.	Alu	0.142857
6	30492025	A->G	+	ENSG00000204592	HLA-E	protein_coding	Intergenic	.	.	Alu	0.166667
7	30622846	A->G	+	ENSG00000106105	GARS	protein_coding	Intergenic	.	.	Alu	0.166667
14	30654554	A->G	+	ENSG00000092108	SCFD1	protein_coding	Intergenic	.	.	Alu	0.2
17	30714193	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
17	30720796	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
17	30720797	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
17	30723977	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
17	30727231	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.5
17	30731037	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.722222
17	30740739	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.09375
17	30761096	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.08
17	30761114	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.190476
17	30761115	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.190476
17	30761228	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
17	30764098	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.3
17	30764207	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
17	30773405	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.714286
17	30787736	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.916667
17	30787738	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	1
17	30815116	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.166667
17	30815124	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.214286
17	30815151	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.153846
17	30815153	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.230769
17	30815154	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.230769
17	30815169	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.2
17	30815171	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.5
17	30815668	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.454545
17	30816522	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.2
17	30816552	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.2
17	30816562	A->G	-	ENSG00000176390	CRLF3	protein_coding	Intergenic	.	.	Alu	0.4
17	30863077	A->G	+	ENSG00000176208	ATAD5	protein_coding	Intergenic	.	.	Alu	0.727273
17	30863091	A->G	+	ENSG00000176208	ATAD5	protein_coding	Intergenic	.	.	Alu	0.2
1	30975448	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.3
1	30975449	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.363636
14	30980643	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.363636
14	30980657	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.181818
1	31015377	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.133333
1	31015462	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.117647
1	31015474	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.3125
1	31015480	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.4375
1	31015506	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.125
1	31015518	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.1875
1	31015544	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.105263
1	31015546	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.1
1	31015578	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.136364
1	31015583	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.166667
14	31019972	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.125
14	31019995	A->G	-	ENSG00000196792	STRN3	protein_coding	Intergenic	.	.	Alu	0.3
1	31025619	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.75
1	31025744	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.384615
1	31025759	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.285714
1	31033343	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.117647
1	31033345	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.176471
1	31033349	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.117647
1	31033560	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.4
1	31039361	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.3
1	31043305	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.153846
1	31043327	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31046646	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31048675	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.272727
1	31048746	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.333333
1	31048747	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
8	31049284	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.142857
1	31052729	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	31053048	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.2
1	31056698	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.157895
1	31056709	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.1
1	31056835	A->G	-	ENSG00000134644	PUM1	protein_coding	Intergenic	.	.	Alu	0.272727
8	31070790	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.333333
8	31070859	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.1
8	31070860	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.1
8	31070861	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.130435
8	31070899	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.4
8	31070904	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0869565
8	31070925	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.115385
8	31070926	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.481481
8	31075462	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.117647
8	31075496	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.153846
8	31075599	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.125
8	31075621	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0689655
8	31075661	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0638298
8	31075672	A->G	+	ENSG00000165392	WRN	protein_coding	Intergenic	.	.	Alu	0.0444444
14	31137203	A->G	-	ENSG00000092148	HECTD1	protein_coding	Intergenic	.	.	Alu	0.2
17	31276094	A->G	+	ENSG00000126861	OMG	protein_coding	Intergenic	.	.	Alu	0.714286
17	31276098	A->G	+	ENSG00000126861	OMG	protein_coding	Intergenic	.	.	Alu	0.714286
17	31276118	A->G	+	ENSG00000126861	OMG	protein_coding	Intergenic	.	.	Alu	0.714286
10	31348444	A->G	+	ENSG00000148516	ZEB1	protein_coding	Intergenic	.	.	Alu	0.125
16	31453232	A->G	-	ENSG00000261474	AC026471.4	lincRNA	Intergenic	.	.	Alu	0.1
3	31542865	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.384615
3	31542880	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.117647
3	31542902	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.2
3	31542927	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	0.125
3	31542998	A->G	+	ENSG00000163527	STT3B	protein_coding	Intergenic	.	.	Alu	1
20	31564911	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0666667
20	31564978	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.142857
20	31565035	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0952381
20	31565045	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.5
20	31565072	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.105263
20	31565087	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.125
20	31565221	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.173913
20	31565223	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.0833333
20	31565224	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.08
20	31565250	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.12
20	31575695	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.307692
20	31575715	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.285714
20	31575722	A->G	+	ENSG00000101294	HM13	protein_coding	Intergenic	.	.	Alu	0.133333
22	31638714	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.176471
22	31638729	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.4375
22	31638733	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.285714
22	31638737	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.25
22	31638862	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.153846
22	31638910	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.214286
22	31638932	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.28
22	31638935	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.125
22	31638978	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.956522
22	31639070	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.238095
22	31639090	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.130435
22	31639100	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0769231
22	31639105	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	1
22	31639109	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0769231
22	31639117	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0714286
22	31639160	A->G	-	ENSG00000241878	PISD	protein_coding	Intergenic	.	.	Alu	0.0714286
6	31752533	A->G	+	ENSG00000204410	MSH5	protein_coding	Intergenic	.	.	Alu	0.181818
22	31791509	A->G	+	ENSG00000100150	DEPDC5	protein_coding	Intergenic	.	.	Alu	1
22	31791510	A->G	+	ENSG00000100150	DEPDC5	protein_coding	Intergenic	.	.	Alu	1
22	31791519	A->G	+	ENSG00000100150	DEPDC5	protein_coding	Intergenic	.	.	Alu	1
2	31906049	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.16
2	31906069	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.222222
2	31906084	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.75
2	31906105	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0909091
2	31906110	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.538462
2	31906149	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31906150	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.4
2	31906151	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.666667
2	31906154	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	31906171	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	1
2	31906242	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	1
1	31922752	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.238095
1	31922888	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.333333
1	31922889	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.25
1	31923215	A->G	-	ENSG00000184007	PTP4A2	protein_coding	Intergenic	.	.	Alu	0.214286
2	31930713	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	31930774	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	31930778	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.307692
17	31944945	A->G	+	ENSG00000178691	SUZ12	protein_coding	Intergenic	.	.	Alu	0.3
17	31944947	A->G	+	ENSG00000178691	SUZ12	protein_coding	Intergenic	.	.	Alu	0.25
2	31990481	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0344828
2	31990514	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0714286
2	31990517	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	31990549	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.318182
2	31990627	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.275862
2	31990628	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.413793
2	31990671	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.230769
2	31990679	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	31990686	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	31990702	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.1875
2	31993990	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	31993991	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	31993996	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.272727
2	31994046	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.235294
2	31994057	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.15
2	31994058	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.263158
2	31994093	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31994098	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.45
2	31994099	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.1
2	31994134	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.181818
2	31994154	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	31994155	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	31999428	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.4
2	31999478	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	31999483	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	31999575	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.8
2	31999587	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	31999664	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	31999938	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.666667
2	31999988	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.7
2	31999992	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.210526
2	32000067	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.190476
2	32000086	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.2
2	32000113	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.172414
2	32000153	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.130435
2	32000167	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.294118
2	32000257	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.153846
2	32000322	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	32000341	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	32000369	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.307692
2	32001068	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.333333
2	32001177	A->G	-	ENSG00000162959	MEMO1	protein_coding	Intergenic	.	.	Alu	0.4
1	32016067	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.176471
1	32019482	A->G	+	ENSG00000121774	KHDRBS1	protein_coding	Intergenic	.	.	Alu	0.214286
1	32065290	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.272727
1	32065331	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.166667
1	32065363	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.272727
1	32065367	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.363636
1	32066192	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.4
1	32066218	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.818182
1	32066219	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.5
1	32066222	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.4
1	32066231	A->G	+	ENSG00000203325	AL445248.1	antisense	Intergenic	.	.	Alu	0.363636
2	32066458	A->G	+	ENSG00000021574	SPAST	protein_coding	Intergenic	.	.	Alu	1
2	32066459	A->G	+	ENSG00000021574	SPAST	protein_coding	Intergenic	.	.	Alu	1
20	32112633	A->G	+	ENSG00000101337	TM9SF4	protein_coding	Intergenic	.	.	Alu	0.454545
20	32112635	A->G	+	ENSG00000101337	TM9SF4	protein_coding	Intergenic	.	.	Alu	0.153846
20	32112643	A->G	+	ENSG00000101337	TM9SF4	protein_coding	Intergenic	.	.	Alu	0.25
20	32112644	A->G	+	ENSG00000101337	TM9SF4	protein_coding	Intergenic	.	.	Alu	0.25
14	32115716	A->G	+	ENSG00000100852	ARHGAP5	protein_coding	Intergenic	.	.	Alu	0.166667
14	32115722	A->G	+	ENSG00000100852	ARHGAP5	protein_coding	Intergenic	.	.	Alu	0.181818
18	32121050	A->G	+	ENSG00000134758	RNF138	protein_coding	Intergenic	.	.	Alu	0.133333
1	32122701	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.2
1	32124158	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.133333
1	32138358	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.181818
1	32143488	A->G	+	ENSG00000025800	KPNA6	protein_coding	Intergenic	.	.	Alu	0.3
5	32152304	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.176471
5	32152305	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.1875
5	32152309	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.3125
5	32152326	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.3
5	32152351	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.0714286
5	32152354	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.275862
5	32152389	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.0909091
5	32152397	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.25
5	32152398	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.08
5	32164997	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.3
5	32165044	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.133333
5	32165048	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.307692
5	32165120	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	1
5	32165145	A->G	-	ENSG00000113384	GOLPH3	protein_coding	Intergenic	.	.	Alu	0.25
2	32292651	A->G	+	ENSG00000119820	YIPF4	protein_coding	Intergenic	.	.	Alu	0.9
2	32300313	A->G	+	ENSG00000119820	YIPF4	protein_coding	Intergenic	.	.	Alu	0.3
10	32300488	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.384615
10	32336072	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.133333
10	32336174	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.2
10	32355682	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.0952381
10	32355716	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.166667
10	32355722	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.363636
10	32358048	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.454545
10	32358049	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.545455
10	32364131	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.625
10	32364136	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.142857
10	32364152	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.611111
10	32364153	A->G	-	ENSG00000120616	EPC1	protein_coding	Intergenic	.	.	Alu	0.166667
5	32370172	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.4
2	32371048	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.666667
2	32371053	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.117647
2	32371092	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.304348
2	32371102	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.173913
2	32371145	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.380952
2	32371455	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.2
1	32373659	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.526316
1	32373697	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.133333
1	32373802	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.181818
1	32373812	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.25
20	32375374	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.3
20	32375406	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.363636
20	32375431	A->G	+	ENSG00000171456	ASXL1	protein_coding	Intergenic	.	.	Alu	0.133333
1	32388983	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.1
1	32389135	A->G	-	ENSG00000160058	BSDC1	protein_coding	Intergenic	.	.	Alu	0.133333
17	32392488	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
17	32392489	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
17	32392544	A->G	+	.	.	.	Intergenic	.	.	Alu	0.105263
17	32392564	A->G	+	.	.	.	Intergenic	.	.	Alu	0.235294
17	32392574	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
17	32392575	A->G	+	.	.	.	Intergenic	.	.	Alu	0.230769
5	32438331	A->G	-	ENSG00000056097	ZFR	protein_coding	Intergenic	.	.	Alu	0.176471
17	32451050	A->G	+	ENSG00000108671	PSMD11	protein_coding	Intergenic	.	.	Alu	0.2
12	32451695	A->G	-	ENSG00000139132	FGD4	protein_coding	Intergenic	.	.	Alu	1
2	32455265	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.09375
2	32455269	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.0625
2	32462695	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.4375
2	32462701	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.235294
2	32462702	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.111111
2	32462707	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.222222
2	32462722	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.2
2	32462728	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.529412
2	32462749	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.222222
2	32462755	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.1
2	32462772	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.277778
2	32462778	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.875
2	32462813	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.117647
2	32462836	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.333333
2	32462841	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.117647
2	32462845	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.1875
2	32462849	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.142857
2	32462877	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.181818
15	32468136	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
1	32547879	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.333333
1	32547905	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.230769
1	32547968	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.1875
1	32548006	A->G	+	ENSG00000160062	ZBTB8A	protein_coding	Intergenic	.	.	Alu	0.142857
2	32553487	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.272727
2	32553488	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.5
2	32553491	A->G	+	ENSG00000115760	BIRC6	protein_coding	Intergenic	.	.	Alu	0.454545
15	32580629	A->G	+	ENSG00000261064	LINC02256	lincRNA	Intergenic	.	.	Alu	0.7
13	32597792	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.2
13	32597797	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.2
21	32598776	A->G	-	ENSG00000265590	AP000275.2	protein_coding	Intergenic	.	.	Alu	1
21	32598781	A->G	-	ENSG00000265590	AP000275.2	protein_coding	Intergenic	.	.	Alu	1
13	32664835	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.133333
13	32665468	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.2
13	32665530	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.111111
13	32665534	A->G	+	ENSG00000083642	PDS5B	protein_coding	Intergenic	.	.	Alu	0.176471
1	32676423	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.333333
1	32676463	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.272727
1	32676489	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.357143
1	32676490	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.285714
1	32676499	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.133333
1	32676535	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	1
1	32676561	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.133333
1	32676562	A->G	+	ENSG00000162521	RBBP4	protein_coding	Intergenic	.	.	Alu	0.1875
20	32696293	A->G	-	ENSG00000285382	FO393400.1	protein_coding	Intergenic	.	.	Alu	0.166667
12	32701802	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.153846
12	32701853	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.454545
12	32702024	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.2
12	32702056	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.133333
12	32702057	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.6
12	32702058	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.6
12	32712625	A->G	+	ENSG00000087470	DNM1L	protein_coding	Intergenic	.	.	Alu	0.153846
1	32785654	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.272727
1	32785655	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.0833333
1	32785711	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.391304
1	32785715	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.5
1	32785720	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.222222
1	32785721	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.56
1	32790087	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.916667
1	32790088	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.75
1	32790129	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.636364
1	32802945	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.166667
1	32802950	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.142857
1	32803246	A->G	-	ENSG00000134684	YARS	protein_coding	Intergenic	.	.	Alu	0.2
1	32820276	A->G	+	ENSG00000116497	S100PBP	protein_coding	Intergenic	.	.	Alu	1
1	32820311	A->G	+	ENSG00000116497	S100PBP	protein_coding	Intergenic	.	.	Alu	1
1	32820320	A->G	+	ENSG00000116497	S100PBP	protein_coding	Intergenic	.	.	Alu	1
1	32822609	A->G	+	ENSG00000116497	S100PBP	protein_coding	Intergenic	.	.	Alu	0.133333
1	32996230	A->G	-	ENSG00000236065	AL020995.1	antisense	Intergenic	.	.	Alu	0.857143
1	32996259	A->G	-	ENSG00000236065	AL020995.1	antisense	Intergenic	.	.	Alu	0.785714
9	33027881	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.2
9	33027928	A->G	+	ENSG00000086061	DNAJA1	protein_coding	Intergenic	.	.	Alu	0.2
1	33029708	A->G	-	ENSG00000004455	AK2	protein_coding	Intergenic	.	.	Alu	1
7	33046901	A->G	-	ENSG00000122643	NT5C3A	protein_coding	Intergenic	.	.	Alu	0.2
7	33046912	A->G	-	ENSG00000122643	NT5C3A	protein_coding	Intergenic	.	.	Alu	0.142857
7	33060152	A->G	-	ENSG00000122643	NT5C3A	protein_coding	Intergenic	.	.	Alu	0.2
7	33060225	A->G	-	ENSG00000122643	NT5C3A	protein_coding	Intergenic	.	.	Alu	0.1
11	33265573	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.125
11	33265647	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.125
11	33265653	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.1875
11	33265659	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0588235
11	33265693	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.075
11	33265714	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0465116
11	33265730	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0588235
11	33265830	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.125
11	33265831	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.24
11	33265898	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0714286
11	33265973	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	33266004	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.107143
11	33266005	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	33268199	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.363636
11	33268332	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.25
11	33268353	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.588235
11	33268363	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	33268470	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.172414
11	33268500	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	33268506	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.192308
11	33268512	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	33268516	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.333333
11	33270687	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.8
11	33270714	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	33270760	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.272727
11	33273319	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33273360	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.208333
11	33273388	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.09375
11	33273394	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.241379
11	33273398	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.0769231
11	33273420	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33273421	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	33279059	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.461538
11	33279060	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	33279066	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	33279260	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.2
11	33279270	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.2
6	33307462	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.181818
6	33307504	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.4
6	33307526	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.4
6	33307530	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.3
6	33307540	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.2
6	33309688	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.153846
6	33309696	A->G	-	ENSG00000231925	TAPBP	protein_coding	Intergenic	.	.	Alu	0.75
11	33341954	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.3
11	33341980	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.473684
11	33342024	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	33342063	A->G	+	ENSG00000110422	HIPK3	protein_coding	Intergenic	.	.	Alu	0.235294
21	33342742	A->G	+	ENSG00000142166	IFNAR1	protein_coding	Intergenic	.	.	Alu	0.181818
3	33434333	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.1
3	33434377	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.277778
3	33434410	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.133333
3	33434435	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	1
3	33434436	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.117647
3	33434449	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.388889
3	33434462	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.238095
3	33434500	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.241379
3	33434505	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.166667
3	33434559	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.117647
3	33434560	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.176471
3	33434568	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.142857
3	33434752	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0625
3	33434754	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0645161
3	33434763	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.129032
3	33434783	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.115385
3	33434784	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.0869565
3	33434890	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.4
3	33434951	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.2
3	33434960	A->G	-	ENSG00000153560	UBP1	protein_coding	Intergenic	.	.	Alu	0.117647
21	33503335	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
21	33525112	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.2
21	33525121	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.363636
21	33525152	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.166667
21	33525164	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.214286
21	33525938	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.181818
21	33526453	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.333333
21	33526469	A->G	-	ENSG00000159131	GART	protein_coding	Intergenic	.	.	Alu	0.136364
3	33817694	A->G	+	ENSG00000170248	PDCD6IP	protein_coding	Intergenic	.	.	Alu	0.2
3	33817695	A->G	+	ENSG00000170248	PDCD6IP	protein_coding	Intergenic	.	.	Alu	0.272727
3	33817697	A->G	+	ENSG00000170248	PDCD6IP	protein_coding	Intergenic	.	.	Alu	0.181818
9	33824723	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.272727
9	33824729	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.5
9	33824731	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.2
9	33824758	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.266667
9	33832161	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.166667
9	33832536	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.176471
9	33832546	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.142857
9	33832563	A->G	+	ENSG00000107341	UBE2R2	protein_coding	Intergenic	.	.	Alu	0.333333
11	33877532	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.25
11	33877562	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.2
11	33877567	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.133333
11	33877589	A->G	-	ENSG00000135363	LMO2	protein_coding	Intergenic	.	.	Alu	0.181818
9	33990804	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.2
9	33990815	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.416667
9	33993930	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.333333
9	33993937	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.105263
9	33993960	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.1875
9	33993971	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.166667
9	33994167	A->G	-	ENSG00000137073	UBAP2	protein_coding	Intergenic	.	.	Alu	0.3
20	33999010	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.1875
20	33999050	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.166667
20	33999075	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.105263
20	33999087	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.111111
20	34012010	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.2
20	34012011	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.133333
20	34035032	A->G	+	ENSG00000125970	RALY	protein_coding	Intergenic	.	.	Alu	0.142857
19	34192425	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.2
19	34192774	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.2
19	34192789	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.181818
19	34192793	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.727273
19	34192832	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.454545
19	34192905	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.3
19	34192907	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.181818
19	34192918	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.5
19	34192920	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.25
19	34192929	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.333333
19	34203613	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.214286
19	34203614	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.384615
19	34203618	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.357143
19	34203682	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.1
19	34203683	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.368421
19	34203688	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.105263
19	34203692	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34203728	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.111111
19	34203754	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34204486	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.125
19	34205064	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.2
19	34205114	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.166667
19	34205209	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.285714
19	34205237	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.125
19	34205366	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.117647
19	34205406	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.105263
19	34205473	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.153846
9	34206425	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.190476
19	34206614	A->G	+	ENSG00000257103	LSM14A	protein_coding	Intergenic	.	.	Alu	0.0769231
9	34218131	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.176471
9	34218158	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.666667
9	34218172	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.16
9	34218173	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.130435
9	34218193	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.1
9	34218207	A->G	+	ENSG00000165006	UBAP1	protein_coding	Intergenic	.	.	Alu	0.0666667
15	34247783	A->G	-	ENSG00000140199	SLC12A6	protein_coding	Intergenic	.	.	Alu	0.416667
6	34325414	A->G	-	ENSG00000272325	NUDT3	protein_coding	Intergenic	.	.	Alu	0.3
20	34364980	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.111111
20	34364994	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0882353
20	34365047	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0571429
20	34365093	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0666667
20	34365102	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.08
20	34365115	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34370608	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34371008	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34378284	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.142857
20	34378285	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34378311	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.2
20	34378351	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.333333
20	34378353	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.125
20	34378354	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.304348
20	34378394	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0714286
20	34378398	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.16
20	34378418	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.148148
20	34378421	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.222222
20	34378425	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.178571
20	34378461	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.111111
20	34410112	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.117647
20	34410135	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.176471
20	34410247	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.111111
20	34410248	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.111111
20	34410274	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0909091
20	34410316	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.2
20	34410321	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.125
20	34410358	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0952381
20	34431776	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34431853	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.333333
20	34431854	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.666667
20	34431862	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.133333
20	34431864	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.117647
20	34431897	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.235294
20	34431913	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.125
20	34431924	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.357143
20	34432004	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.1
20	34432009	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.0952381
20	34433598	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.166667
20	34433605	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.214286
20	34437047	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.416667
20	34437114	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.277778
20	34451337	A->G	+	ENSG00000231795	ITCH-IT1	sense_intronic	Intergenic	.	.	Alu	0.142857
20	34467439	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.25
20	34467469	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.307692
20	34468671	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.454545
20	34468684	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.230769
20	34468730	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.428571
20	34468732	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.153846
20	34468739	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.153846
20	34468778	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
20	34468786	A->G	+	ENSG00000078747	ITCH	protein_coding	Intergenic	.	.	Alu	0.181818
6	34758867	A->G	+	ENSG00000124562	SNRPC	protein_coding	Intergenic	.	.	Alu	0.181818
11	34814076	A->G	+	.	.	.	Intergenic	.	.	Alu	0.8
21	34853885	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.230769
21	34853905	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.285714
21	34853945	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.263158
21	34853951	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.1875
21	34853961	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.133333
21	34853980	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.153846
21	34853989	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.111111
21	34853993	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.333333
14	34863250	A->G	-	ENSG00000198604	BAZ1A	protein_coding	Intergenic	.	.	Alu	0.2
14	34863261	A->G	-	ENSG00000198604	BAZ1A	protein_coding	Intergenic	.	.	Alu	0.153846
21	34863666	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.0967742
21	34863692	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.111111
21	34863749	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.166667
21	34863750	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.08
21	34863755	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.357143
21	34863757	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.1
21	34876924	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.111111
21	34877033	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.142857
21	34877034	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.153846
6	34886526	A->G	-	ENSG00000064995	TAF11	protein_coding	Intergenic	.	.	Alu	0.153846
21	34948821	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.166667
21	34948883	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.125
21	34948884	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.125
15	34950142	A->G	-	ENSG00000021776	AQR	protein_coding	Intergenic	.	.	Alu	0.2
15	34950361	A->G	-	ENSG00000021776	AQR	protein_coding	Intergenic	.	.	Alu	0.142857
21	34961955	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.214286
21	34962031	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.4
21	34962041	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.181818
21	34962057	A->G	-	ENSG00000159216	RUNX1	protein_coding	Intergenic	.	.	Alu	0.3
20	35029841	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	1
20	35029865	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.666667
20	35031495	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.133333
20	35032611	A->G	-	ENSG00000100991	TRPC4AP	protein_coding	Intergenic	.	.	Alu	0.75
9	35047173	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
9	35047205	A->G	-	.	.	.	Intergenic	.	.	Alu	0.454545
18	35063877	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.230769
18	35063905	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.52381
18	35063918	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.222222
18	35063943	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.0645161
18	35063955	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.321429
18	35063968	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.111111
18	35064088	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.416667
18	35064090	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.181818
18	35064093	A->G	+	ENSG00000166974	MAPRE2	protein_coding	Intergenic	.	.	Alu	0.166667
17	35076088	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.73913
17	35076090	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.304348
17	35076126	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.0740741
17	35076154	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.210526
17	35076173	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.117647
17	35076210	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.26087
17	35076217	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.391304
17	35076221	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.26087
17	35076261	A->G	-	ENSG00000092871	RFFL	protein_coding	Intergenic	.	.	Alu	0.333333
10	35355513	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.2
10	35355665	A->G	+	ENSG00000108100	CCNY	protein_coding	Intergenic	.	.	Alu	0.333333
18	35643639	A->G	+	ENSG00000141429	GALNT1	protein_coding	Intergenic	.	.	Alu	0.2
9	35702625	A->G	-	ENSG00000137076	TLN1	protein_coding	Intergenic	.	.	Alu	1
16	35705328	A->G	+	.	.	.	Intergenic	.	.	Alu	1
20	35725576	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.0444444
20	35727865	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.357143
20	35727921	A->G	-	ENSG00000131051	RBM39	protein_coding	Intergenic	.	.	Alu	0.181818
9	35763778	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
19	35770710	A->G	+	ENSG00000167595	PROSER3	protein_coding	Intergenic	.	.	Alu	1
1	35813602	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.153846
1	35813617	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.166667
1	35813634	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35813664	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.307692
1	35813669	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.272727
1	35813674	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.615385
1	35813864	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.136364
1	35813888	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.117647
7	35814772	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.9
7	35814894	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	1
7	35814895	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.153846
7	35814920	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.157895
1	35816523	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.230769
1	35816537	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.25
1	35816546	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.5
1	35816634	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35816637	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35816639	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.25
1	35816648	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.125
1	35816656	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.5
1	35818579	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.210526
1	35819612	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.727273
1	35819618	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.333333
1	35819622	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.25
1	35819678	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.333333
20	35821580	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.2
20	35823571	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.181818
17	35827323	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.4
17	35827495	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.235294
17	35827518	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.333333
17	35827660	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.0645161
17	35827662	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.0909091
17	35827695	A->G	+	ENSG00000270647	TAF15	protein_coding	Intergenic	.	.	Alu	0.0769231
20	35827728	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	0.2
1	35829582	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.3
1	35829587	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.181818
1	35829829	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.636364
1	35829905	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.666667
1	35829994	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.3
1	35830070	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.157895
1	35833164	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.142857
1	35833168	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.153846
1	35833181	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.363636
1	35833185	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.272727
1	35833199	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.181818
1	35833260	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.133333
1	35833266	A->G	+	ENSG00000134698	AGO4	protein_coding	Intergenic	.	.	Alu	0.2
20	35877231	A->G	+	ENSG00000025293	PHF20	protein_coding	Intergenic	.	.	Alu	1
7	35888548	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.4
7	35888699	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.230769
7	35888705	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.125
7	35888709	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.3125
7	35888713	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.133333
7	35888716	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.176471
7	35888748	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.111111
7	35888752	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.166667
7	35888754	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.176471
7	35888777	A->G	+	ENSG00000122545	7-Sep	protein_coding	Intergenic	.	.	Alu	0.136364
18	36019204	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.214286
18	36019205	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.153846
18	36019246	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	1
18	36019272	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.55
18	36019291	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.125
18	36019297	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.142857
18	36019302	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.2
18	36019312	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.272727
18	36019317	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.545455
18	36019374	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.153846
18	36019379	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.833333
18	36019380	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.75
18	36019402	A->G	-	ENSG00000141425	RPRD1A	protein_coding	Intergenic	.	.	Alu	0.25
6	36030416	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.153846
6	36030433	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.3125
6	36030438	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.117647
6	36030476	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.111111
6	36030508	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.133333
6	36030510	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.2
6	36030580	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.0689655
6	36030608	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.0769231
6	36030629	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.230769
6	36036047	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.5
6	36036048	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.2
6	36036113	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.181818
6	36036142	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.2
6	36036147	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.357143
6	36036148	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.357143
6	36045688	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.115385
6	36045796	A->G	+	ENSG00000112062	MAPK14	protein_coding	Intergenic	.	.	Alu	0.2
9	36153060	A->G	+	ENSG00000122694	GLIPR2	protein_coding	Intergenic	.	.	Alu	0.2
1	36235994	A->G	+	ENSG00000054118	THRAP3	protein_coding	Intergenic	.	.	Alu	0.454545
1	36255698	A->G	+	ENSG00000054118	THRAP3	protein_coding	Intergenic	.	.	Alu	0.133333
10	36374937	A->G	+	.	.	.	Intergenic	.	.	Alu	1
22	36375806	A->G	-	ENSG00000100345	MYH9	protein_coding	Intergenic	.	.	Alu	0.2
21	36396455	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.307692
21	36396459	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.166667
21	36396460	A->G	+	ENSG00000159259	CHAF1B	protein_coding	Intergenic	.	.	Alu	0.272727
6	36450326	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.181818
9	36451207	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.3
9	36451679	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.272727
6	36458617	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.105263
6	36458618	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.2
6	36458644	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.117647
6	36458645	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.2
6	36458654	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.0909091
6	36458735	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.363636
6	36458736	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.2
6	36458908	A->G	+	ENSG00000112078	KCTD20	protein_coding	Intergenic	.	.	Alu	0.272727
1	36476745	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0566038
1	36476768	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0537634
1	36476789	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0227273
1	36476825	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0694444
1	36476830	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0235294
1	36476858	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0566038
1	36476869	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0714286
1	36476878	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.196721
1	36476889	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.046875
1	36476916	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0735294
1	36476919	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.109375
1	36476920	A->G	-	ENSG00000119535	CSF3R	protein_coding	Intergenic	.	.	Alu	0.0327869
9	36480649	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.0666667
9	36480689	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.0769231
9	36480690	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.0833333
9	36480800	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.153846
9	36480801	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.230769
9	36480817	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.230769
9	36480823	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.125
9	36480831	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.105263
9	36482257	A->G	-	ENSG00000137075	RNF38	protein_coding	Intergenic	.	.	Alu	0.166667
6	36498690	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.25
6	36498762	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.142857
6	36498790	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.181818
6	36508082	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.166667
6	36530602	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.166667
6	36541925	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.117647
6	36541993	A->G	-	ENSG00000112079	STK38	protein_coding	Intergenic	.	.	Alu	0.166667
17	36548580	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.181818
17	36548603	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.181818
17	36562749	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	1
17	36562818	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	36562822	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.190476
17	36562885	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.230769
17	36562886	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.153846
17	36562891	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.571429
17	36563090	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.133333
17	36563110	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.111111
17	36563145	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	1
17	36563146	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.181818
17	36566550	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.153846
17	36566556	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.176471
17	36566630	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.214286
17	36571722	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.2
20	36575843	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.181818
20	36575868	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36575886	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36575892	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.181818
20	36576041	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.105263
17	36576366	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.0967742
17	36576417	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.09375
17	36576479	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.125
17	36576493	A->G	+	ENSG00000278311	GGNBP2	protein_coding	Intergenic	.	.	Alu	0.181818
20	36578158	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36578188	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.333333
20	36578210	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0909091
20	36578211	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0909091
20	36578234	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0689655
20	36578235	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.178571
20	36578236	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.464286
20	36578267	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0952381
20	36578271	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.15
20	36578293	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.409091
20	36578294	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.181818
20	36578303	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.105263
20	36578307	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0952381
20	36578328	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.421053
20	36578334	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.615385
20	36578362	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.181818
20	36580550	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.208333
20	36580570	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.444444
20	36580630	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.294118
20	36580663	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.125
20	36580689	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.266667
20	36580766	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.1
20	36580924	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36580941	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.166667
20	36580948	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.230769
20	36580949	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.166667
20	36583551	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.214286
20	36583687	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.333333
20	36583720	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36583721	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.3
20	36583838	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0645161
20	36583847	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.108108
20	36583920	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0625
20	36583940	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.0740741
20	36585308	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.266667
20	36585311	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.125
20	36585366	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.2
20	36585414	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.25
20	36585415	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.166667
20	36585420	A->G	+	ENSG00000118707	TGIF2	protein_coding	Intergenic	.	.	Alu	0.181818
19	36809213	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.2
19	36809294	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.25
19	36809316	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.727273
19	36809322	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.2
19	36809326	A->G	+	ENSG00000267254	AC020928.1	antisense	Intergenic	.	.	Alu	0.818182
19	36834136	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.333333
19	36834158	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.133333
19	36834175	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.583333
19	36834200	A->G	+	ENSG00000197863	ZNF790	protein_coding	Intergenic	.	.	Alu	0.25
20	36913125	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.730769
20	36913135	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.24
20	36913145	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.913043
20	36914423	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.363636
20	36914424	A->G	-	ENSG00000101347	SAMHD1	protein_coding	Intergenic	.	.	Alu	0.8
22	36932414	A->G	+	ENSG00000100368	CSF2RB	protein_coding	Intergenic	.	.	Alu	0.2
5	36968659	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.3
5	36968675	A->G	+	ENSG00000164190	NIPBL	protein_coding	Intergenic	.	.	Alu	0.166667
20	37033096	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.2
20	37033115	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.133333
7	37080500	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
7	37080505	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.157895
7	37080509	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.117647
7	37080553	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.111111
7	37080576	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
7	37080730	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.166667
20	37085792	A->G	-	ENSG00000080839	RBL1	protein_coding	Intergenic	.	.	Alu	0.6
19	37087230	A->G	+	ENSG00000197050	ZNF420	protein_coding	Intergenic	.	.	Alu	0.166667
3	37098455	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.230769
3	37098473	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	37098484	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.214286
3	37098499	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.3125
3	37102595	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.3
3	37102596	A->G	-	ENSG00000093167	LRRFIP2	protein_coding	Intergenic	.	.	Alu	0.4
2	37115144	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.173913
2	37115145	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.0833333
2	37115159	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.0869565
2	37115259	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.111111
2	37115267	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.125
2	37115329	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.315789
2	37115334	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.190476
2	37115335	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.142857
2	37144614	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	Intergenic	.	.	Alu	0.230769
9	37161520	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.272727
9	37161524	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.583333
9	37161525	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.25
9	37164402	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.571429
9	37164410	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.25
9	37164618	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.05
9	37164635	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.88
9	37164643	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.578947
9	37170006	A->G	+	ENSG00000147905	ZCCHC7	protein_coding	Intergenic	.	.	Alu	0.25
7	37171569	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.136364
7	37179415	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.5
7	37200096	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.0769231
7	37200146	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.380952
7	37200147	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
7	37200185	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.230769
7	37200189	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.08
7	37200206	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.185185
7	37200212	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.818182
7	37200300	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.583333
7	37200308	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.461538
7	37200313	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
7	37200318	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.333333
7	37200353	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.2
7	37200356	A->G	-	ENSG00000155849	ELMO1	protein_coding	Intergenic	.	.	Alu	0.3
5	37207989	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.3
5	37215867	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
5	37216015	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.166667
5	37216040	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.214286
5	37216055	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.75
5	37216069	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.133333
5	37216109	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.363636
5	37216110	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	37235701	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.142857
5	37235710	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.75
5	37235726	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.117647
2	37236730	A->G	+	ENSG00000003509	NDUFAF7	protein_coding	Intergenic	.	.	Alu	0.181818
5	37238455	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.153846
5	37238567	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.210526
5	37238591	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37238592	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37238628	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.181818
5	37238742	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.105263
5	37238754	A->G	-	ENSG00000197603	CPLANE1	protein_coding	Intergenic	.	.	Alu	0.3
3	37260344	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.2
3	37260538	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.4
3	37260548	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.333333
3	37262430	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0588235
3	37262431	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0588235
3	37262438	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0606061
3	37265782	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.642857
3	37265783	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.642857
3	37265838	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0740741
3	37265877	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.08
3	37265881	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.15
3	37265890	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.1
3	37265894	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.107143
3	37265912	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.0740741
3	37265936	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.111111
3	37265946	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	1
3	37265951	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.785714
3	37265965	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.153846
3	37266014	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.636364
3	37273893	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.2
3	37273993	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.142857
3	37274003	A->G	+	ENSG00000144674	GOLGA4	protein_coding	Intergenic	.	.	Alu	0.176471
2	37292356	A->G	-	ENSG00000115825	PRKD3	protein_coding	Intergenic	.	.	Alu	0.0952381
19	37343210	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.214286
19	37343216	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.5625
19	37343263	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.133333
19	37343268	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.5
19	37343275	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.166667
19	37361899	A->G	+	ENSG00000181666	HKR1	protein_coding	Intergenic	.	.	Alu	0.2
21	37372327	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.0714286
21	37410922	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.166667
21	37410928	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.2
21	37410941	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.45
21	37411102	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.666667
21	37411103	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.666667
21	37411233	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.5
21	37411269	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.214286
21	37411276	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.125
21	37411297	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.157895
21	37411311	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.1
21	37426647	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.157895
21	37427130	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	1
21	37427131	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	1
21	37427135	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	0.181818
21	37427241	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	1
21	37427245	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	1
21	37427257	A->G	+	ENSG00000157540	DYRK1A	protein_coding	Intergenic	.	.	Alu	1
4	37571431	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.2
4	37619008	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.117647
4	37619017	A->G	-	ENSG00000154274	C4orf19	protein_coding	Intergenic	.	.	Alu	0.176471
6	37829281	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.142857
6	37829311	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.16
6	37829321	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.105263
6	37829357	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.214286
6	37829371	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
6	37829389	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.230769
6	37829415	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
6	37833679	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.375
22	37857243	A->G	+	ENSG00000100129	EIF3L	protein_coding	Intergenic	.	.	Alu	0.181818
22	37857249	A->G	+	ENSG00000100129	EIF3L	protein_coding	Intergenic	.	.	Alu	1
22	37857276	A->G	+	ENSG00000100129	EIF3L	protein_coding	Intergenic	.	.	Alu	0.272727
22	37867898	A->G	+	ENSG00000100129	EIF3L	protein_coding	Intergenic	.	.	Alu	0.181818
22	37867905	A->G	+	ENSG00000100129	EIF3L	protein_coding	Intergenic	.	.	Alu	0.166667
6	37870178	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.28
6	37870188	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.347826
6	37870437	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.1
6	37870519	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.0869565
6	37870520	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.166667
6	37870549	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.266667
6	37870581	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.307692
6	37884307	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.272727
6	37884308	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.272727
6	37884312	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.3
6	37884444	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.142857
8	37888870	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.133333
8	37888890	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.166667
8	37888922	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.181818
8	37893212	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.5
8	37893213	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.454545
8	37895348	A->G	-	ENSG00000156675	RAB11FIP1	protein_coding	Intergenic	.	.	Alu	0.111111
1	37916366	A->G	-	ENSG00000204084	INPP5B	protein_coding	Intergenic	.	.	Alu	0.272727
1	37916367	A->G	-	ENSG00000204084	INPP5B	protein_coding	Intergenic	.	.	Alu	0.272727
6	37934718	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.142857
6	37937579	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.142857
6	37971854	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.181818
6	37976383	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.333333
6	37976386	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.470588
6	37976396	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.1875
6	37976406	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.214286
6	37976504	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.272727
6	37976529	A->G	+	ENSG00000156639	ZFAND3	protein_coding	Intergenic	.	.	Alu	0.2
10	38031490	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.25
10	38031495	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.416667
10	38031514	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.266667
10	38031515	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.133333
10	38047506	A->G	+	ENSG00000189180	ZNF33A	protein_coding	Intergenic	.	.	Alu	0.181818
8	38239326	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.181818
8	38239474	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.272727
8	38239477	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.153846
8	38239524	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.117647
8	38239525	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.117647
8	38239540	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.416667
8	38239544	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.181818
8	38239984	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.333333
8	38239985	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.2
8	38239997	A->G	+	ENSG00000085788	DDHD2	protein_coding	Intergenic	.	.	Alu	0.35
21	38437066	A->G	-	ENSG00000157554	ERG	protein_coding	Intergenic	.	.	Alu	0.153846
21	38437068	A->G	-	ENSG00000157554	ERG	protein_coding	Intergenic	.	.	Alu	0.153846
8	38446286	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	38462683	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.333333
8	38462715	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.1875
8	38462721	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.352941
8	38462741	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.529412
8	38462768	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.428571
8	38462779	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.133333
8	38462783	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.125
8	38462797	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.266667
8	38462807	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	38462876	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	38462978	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.3125
8	38463007	A->G	-	ENSG00000077782	FGFR1	protein_coding	Intergenic	.	.	Alu	0.454545
6	38465906	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.615385
6	38563820	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.157895
6	38563839	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.142857
6	38563850	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.4
6	38563871	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.214286
6	38563893	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.166667
6	38563914	A->G	-	ENSG00000183826	BTBD9	protein_coding	Intergenic	.	.	Alu	0.166667
7	38701433	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
22	38714292	A->G	+	ENSG00000100226	GTPBP1	protein_coding	Intergenic	.	.	Alu	0.5
22	38744349	A->G	+	ENSG00000100242	SUN2	protein_coding	Intergenic	.	.	Alu	0.3
3	38772510	A->G	+	ENSG00000185313	SCN10A	protein_coding	Intergenic	.	.	Alu	1
3	38772512	A->G	+	ENSG00000185313	SCN10A	protein_coding	Intergenic	.	.	Alu	1
17	38776569	A->G	-	ENSG00000276293	PIP4K2B	protein_coding	Intergenic	.	.	Alu	1
8	38815926	A->G	+	ENSG00000147526	TACC1	protein_coding	Intergenic	.	.	Alu	0.333333
20	38817472	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.133333
20	38817480	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.117647
20	38841424	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.138889
20	38841430	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0571429
20	38841434	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.0540541
19	38844946	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.1
19	38844958	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.592593
19	38844997	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.25
19	38844999	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.111111
19	38845175	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.5
19	38845198	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intergenic	.	.	Alu	0.421053
20	38851952	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.285714
20	38884950	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.538462
20	38884956	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.5
20	38885019	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.384615
20	38885090	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.125
20	38885976	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.833333
20	38886019	A->G	+	ENSG00000101445	PPP1R16B	protein_coding	Intergenic	.	.	Alu	0.909091
1	39030702	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.266667
1	39030982	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.181818
1	39031011	A->G	+	ENSG00000168653	NDUFS5	protein_coding	Intergenic	.	.	Alu	0.230769
1	39043228	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
1	39043464	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
1	39043486	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
1	39043869	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
1	39043874	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
1	39043882	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
1	39044159	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
1	39044187	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
1	39044289	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1875
1	39044299	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
1	39044306	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0909091
1	39044398	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
5	39050469	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intergenic	.	.	Alu	0.2
5	39050530	A->G	-	ENSG00000164327	RICTOR	protein_coding	Intergenic	.	.	Alu	0.153846
3	39058977	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.1
3	39058996	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.227273
3	39059025	A->G	+	ENSG00000114742	WDR48	protein_coding	Intergenic	.	.	Alu	0.333333
2	39097701	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.117647
2	39097702	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.111111
2	39097744	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.2
2	39097747	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.2
2	39111764	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.210526
2	39111765	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0512821
2	39111797	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.277778
2	39111862	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.125
2	39111868	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.307692
2	39111926	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.2
2	39111949	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.25
2	39112436	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.529412
2	39112442	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.411765
2	39113288	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.545455
2	39113305	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.411765
2	39113306	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.117647
2	39113315	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.142857
2	39113329	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.285714
2	39113406	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.333333
2	39114240	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0740741
2	39114665	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.2
2	39115487	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0645161
2	39115504	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.0588235
2	39115553	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.25
2	39115579	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.117647
2	39115637	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.230769
2	39115646	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.357143
2	39115664	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.181818
2	39115687	A->G	-	ENSG00000115904	SOS1	protein_coding	Intergenic	.	.	Alu	0.166667
4	39152170	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
14	39178837	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.214286
14	39178838	A->G	+	ENSG00000100941	PNN	protein_coding	Intergenic	.	.	Alu	0.235294
21	39243557	A->G	-	ENSG00000185658	BRWD1	protein_coding	Intergenic	.	.	Alu	0.2
21	39243566	A->G	-	ENSG00000185658	BRWD1	protein_coding	Intergenic	.	.	Alu	0.2
21	39243584	A->G	-	ENSG00000185658	BRWD1	protein_coding	Intergenic	.	.	Alu	0.105263
2	39268558	A->G	-	ENSG00000011566	MAP4K3	protein_coding	Intergenic	.	.	Alu	0.384615
19	39332837	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.6
19	39333266	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.7
19	39333282	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.2
19	39333311	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.153846
19	39333324	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.454545
19	39333383	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.166667
19	39334084	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.272727
19	39334089	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.125
19	39334149	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.0952381
19	39334155	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.409091
19	39334181	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	1
19	39334184	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.117647
19	39334186	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.133333
19	39334880	A->G	-	ENSG00000130755	GMFG	protein_coding	Intergenic	.	.	Alu	0.166667
22	39355969	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.5
22	39356118	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.2
22	39356122	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.2
22	39356128	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.6
22	39356136	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.3
22	39356167	A->G	+	ENSG00000100321	SYNGR1	protein_coding	Intergenic	.	.	Alu	0.133333
17	39366931	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.133333
17	39367015	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.181818
17	39367021	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.2
17	39367155	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.333333
17	39367359	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.214286
17	39367892	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.0952381
17	39367896	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.130435
17	39372800	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.2
17	39372813	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.333333
17	39372898	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.0740741
17	39374841	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.285714
17	39387352	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.294118
17	39387353	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.611111
17	39387358	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.263158
17	39387377	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.181818
17	39387417	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.1875
17	39387418	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.133333
17	39387444	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.117647
17	39394331	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.125
17	39394511	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.153846
17	39394514	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.1875
17	39394519	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.117647
17	39394549	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	1
17	39394550	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.0869565
17	39394670	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.166667
17	39394689	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.466667
17	39394810	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.181818
17	39394826	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.153846
17	39394831	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.230769
17	39394832	A->G	-	ENSG00000108306	FBXL20	protein_coding	Intergenic	.	.	Alu	0.153846
19	39452824	A->G	+	ENSG00000196235	SUPT5H	protein_coding	Intergenic	.	.	Alu	0.2
17	39504759	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.166667
17	39504780	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.3
17	39504865	A->G	+	ENSG00000167258	CDK12	protein_coding	Intergenic	.	.	Alu	0.2
4	39703753	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39703788	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1875
4	39703796	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.125
4	39703803	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39712323	A->G	-	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.357143
4	39717042	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39717045	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.384615
4	39717074	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39724491	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.384615
4	39724492	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.538462
4	39724500	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.363636
4	39724640	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.307692
4	39724648	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39724658	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.214286
4	39724672	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39724676	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.117647
4	39724685	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.15
4	39724705	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.333333
4	39724712	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.526316
4	39725172	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39725256	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.333333
4	39725262	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.105263
4	39725276	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39725289	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.111111
4	39725301	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.272727
4	39725319	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39725333	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.454545
4	39725365	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.181818
4	39748524	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.0638298
4	39748538	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.363636
4	39758606	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39758626	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.384615
4	39758633	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.272727
4	39758673	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39759912	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39759926	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39760014	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.6
4	39760056	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1
4	39760057	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1
4	39760083	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.133333
4	39760098	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.5
4	39768177	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.4
4	39768311	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.5
4	39768396	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.2
4	39774183	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.1875
4	39774189	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
4	39774352	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.117647
4	39774353	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.166667
4	39774492	A->G	+	ENSG00000078140	UBE2K	protein_coding	Intergenic	.	.	Alu	0.142857
1	39874692	A->G	-	ENSG00000043514	TRIT1	protein_coding	Intergenic	.	.	Alu	0.8
1	39874693	A->G	-	ENSG00000043514	TRIT1	protein_coding	Intergenic	.	.	Alu	0.666667
4	39896262	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.105263
4	39896269	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.333333
4	39896273	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.1
4	39896318	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.538462
4	39952866	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.454545
4	39952867	A->G	-	ENSG00000121892	PDS5A	protein_coding	Intergenic	.	.	Alu	0.3
19	39979396	A->G	+	ENSG00000013275	PSMC4	protein_coding	Intergenic	.	.	Alu	1
19	39979399	A->G	+	ENSG00000013275	PSMC4	protein_coding	Intergenic	.	.	Alu	1
19	39979441	A->G	+	ENSG00000013275	PSMC4	protein_coding	Intergenic	.	.	Alu	1
22	40048337	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.357143
22	40048338	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.5
22	40048353	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.157895
22	40048355	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.210526
22	40048430	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.214286
22	40048437	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.15625
22	40048482	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.117647
22	40048493	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.117647
22	40048520	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.138889
22	40056530	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.125
22	40056584	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.133333
22	40056694	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0833333
22	40056715	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0869565
22	40056718	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0869565
22	40072725	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.111111
22	40072743	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0588235
22	40072757	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.125
22	40072785	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0882353
22	40072814	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.0606061
22	40074417	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.3
22	40074847	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
4	40081992	A->G	+	ENSG00000078177	N4BP2	protein_coding	Intergenic	.	.	Alu	0.533333
9	40085909	A->G	-	ENSG00000204837	FGF7P3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.5
22	40098210	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40098266	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.235294
22	40130703	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.181818
22	40133804	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.125
22	40133850	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.1
22	40144662	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.130435
22	40144663	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.12
22	40145099	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.333333
22	40145117	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.4
22	40163347	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.166667
22	40166858	A->G	+	ENSG00000100354	TNRC6B	protein_coding	Intergenic	.	.	Alu	0.181818
1	40185340	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.181818
1	40214789	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.384615
1	40214843	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.117647
1	40215612	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.333333
1	40215650	A->G	+	ENSG00000117000	RLF	protein_coding	Intergenic	.	.	Alu	0.190476
4	40229579	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.25
4	40229584	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.133333
4	40229586	A->G	+	ENSG00000168421	RHOH	protein_coding	Intergenic	.	.	Alu	0.466667
17	40264283	A->G	+	ENSG00000171475	WIPF2	protein_coding	Intergenic	.	.	Alu	0.166667
19	40276569	A->G	-	ENSG00000105221	AKT2	protein_coding	Intergenic	.	.	Alu	0.3
22	40372165	A->G	-	ENSG00000100359	SGSM3	protein_coding	Intergenic	.	.	Alu	0.166667
22	40498488	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.153846
22	40498504	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.636364
22	40498508	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.3
22	40499982	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.125
22	40500041	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.166667
22	40500067	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.363636
22	40535491	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.333333
22	40539097	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.272727
22	40539127	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.153846
22	40539132	A->G	-	ENSG00000196588	MKL1	protein_coding	Intergenic	.	.	Alu	0.25
15	40596776	A->G	+	ENSG00000137812	KNL1	protein_coding	Intergenic	.	.	Alu	1
15	40596788	A->G	+	ENSG00000137812	KNL1	protein_coding	Intergenic	.	.	Alu	1
15	40596817	A->G	+	ENSG00000137812	KNL1	protein_coding	Intergenic	.	.	Alu	0.866667
13	40620871	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.133333
13	40652402	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.08
13	40652432	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.111111
13	40652441	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.136364
13	40652488	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.142857
13	40652510	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.333333
13	40652511	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.181818
13	40655705	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.125
13	40657381	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.136364
13	40657576	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.166667
13	40657590	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.181818
13	40657607	A->G	-	ENSG00000150907	FOXO1	protein_coding	Intergenic	.	.	Alu	0.272727
15	40660713	A->G	+	ENSG00000137812	KNL1	protein_coding	Intergenic	.	.	Alu	0.272727
15	40693662	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.176471
15	40693734	A->G	-	ENSG00000245849	RAD51-AS1	processed_transcript	Intergenic	.	.	Alu	0.4375
1	40707749	A->G	+	ENSG00000066136	NFYC	protein_coding	Intergenic	.	.	Alu	0.2
15	40750287	A->G	-	ENSG00000137824	RMDN3	protein_coding	Intergenic	.	.	Alu	0.133333
15	40750305	A->G	-	ENSG00000137824	RMDN3	protein_coding	Intergenic	.	.	Alu	0.117647
15	40750316	A->G	-	ENSG00000137824	RMDN3	protein_coding	Intergenic	.	.	Alu	0.133333
1	40955971	A->G	-	.	.	.	Intergenic	.	.	Alu	1
1	40955976	A->G	-	.	.	.	Intergenic	.	.	Alu	1
1	40955980	A->G	-	.	.	.	Intergenic	.	.	Alu	1
15	40986392	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.9
15	40986401	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.8
15	40986410	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	1
15	40986453	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.263158
15	40986457	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.0952381
15	40986469	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.125
15	40986489	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.181818
15	40986597	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.125
15	40986603	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.3125
13	40997325	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0952381
13	40997355	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.08
13	40997369	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.272727
13	40997422	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.666667
13	40997426	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.5
13	40997428	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.135135
13	40997429	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.5
13	40997490	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.148148
13	40997493	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.111111
13	40997625	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.4
13	41000392	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.025
13	41000426	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0238095
13	41000455	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0545455
13	41000493	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0930233
13	41000502	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0392157
13	41012605	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0789474
13	41012623	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0769231
13	41012652	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
13	41012757	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.192308
13	41012781	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.153846
13	41012782	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.115385
13	41012813	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.0869565
13	41012844	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.125
15	41037843	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.2
15	41037929	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.357143
15	41038072	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.0952381
15	41038077	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.190476
15	41038080	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.190476
15	41038087	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.4
15	41038152	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.666667
15	41038175	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.3
20	41040659	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.478261
20	41040685	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0645161
20	41041214	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.478261
20	41041216	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.434783
20	41041262	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0769231
20	41041289	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0833333
20	41041298	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0714286
20	41041299	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.192308
20	41041300	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.0769231
20	41041308	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.08
20	41041323	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.323529
20	41041329	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.075
20	41041356	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.157895
20	41041365	A->G	+	ENSG00000198900	TOP1	protein_coding	Intergenic	.	.	Alu	0.395349
13	41057249	A->G	-	ENSG00000120690	ELF1	protein_coding	Intergenic	.	.	Alu	0.133333
15	41091782	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.416667
15	41091786	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.153846
15	41091792	A->G	-	ENSG00000128908	INO80	protein_coding	Intergenic	.	.	Alu	0.4
X	41101466	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.3
22	41109176	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.4
22	41109189	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.230769
22	41137168	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.153846
22	41137251	A->G	+	ENSG00000100393	EP300	protein_coding	Intergenic	.	.	Alu	0.2
X	41198931	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.133333
X	41198953	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.153846
X	41198997	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.2
X	41199008	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.133333
X	41199028	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.176471
X	41199073	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.25
X	41199077	A->G	+	ENSG00000124486	USP9X	protein_coding	Intergenic	.	.	Alu	0.583333
3	41215269	A->G	+	ENSG00000168036	CTNNB1	protein_coding	Intergenic	.	.	Alu	0.025
3	41215333	A->G	+	ENSG00000168036	CTNNB1	protein_coding	Intergenic	.	.	Alu	0.0535714
1	41234224	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.25
1	41234540	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.3
1	41234607	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.0769231
1	41234613	A->G	-	ENSG00000010803	SCMH1	protein_coding	Intergenic	.	.	Alu	0.888889
19	41266180	A->G	+	ENSG00000105323	HNRNPUL1	protein_coding	Intergenic	.	.	Alu	0.25
19	41367091	A->G	+	ENSG00000142046	TMEM91	protein_coding	Intergenic	.	.	Alu	0.7
9	41379645	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
15	41385211	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
15	41418729	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.15
15	41424898	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.3
15	41424964	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.2
15	41436336	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.142857
15	41436439	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.166667
15	41436503	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.153846
15	41436509	A->G	+	ENSG00000137815	RTF1	protein_coding	Intergenic	.	.	Alu	0.153846
8	41546907	A->G	-	ENSG00000253133	AC009630.1	antisense	Intergenic	.	.	Alu	0.769231
20	41609924	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.266667
20	41609929	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.117647
20	41609955	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.105263
20	41609989	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.1875
20	41609994	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.666667
20	41609995	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.352941
20	41610036	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.5
20	41610039	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.0740741
20	41610051	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.448276
20	41610061	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.16129
20	41610099	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.75
20	41610122	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.722222
20	41610123	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.157895
20	41610128	A->G	-	ENSG00000124177	CHD6	protein_coding	Intergenic	.	.	Alu	0.3125
22	41622824	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.16
22	41627409	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.272727
22	41627433	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.545455
22	41627434	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.3
22	41627464	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.166667
22	41627488	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.2
22	41627491	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.263158
22	41627500	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.222222
22	41627555	A->G	+	ENSG00000196419	XRCC6	protein_coding	Intergenic	.	.	Alu	0.6
22	41675601	A->G	-	ENSG00000100138	SNU13	protein_coding	Intergenic	.	.	Alu	0.142857
22	41675659	A->G	-	ENSG00000100138	SNU13	protein_coding	Intergenic	.	.	Alu	0.105263
17	41762360	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.2
17	41774365	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.2
17	41774462	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.181818
17	41774480	A->G	-	ENSG00000173801	JUP	protein_coding	Intergenic	.	.	Alu	0.166667
22	41851866	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.2
22	41851957	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.272727
22	41851987	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.272727
22	41852000	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.272727
22	41852069	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.2
22	41854019	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.2
22	41856947	A->G	+	ENSG00000198911	SREBF2	protein_coding	Intergenic	.	.	Alu	0.3
3	41918851	A->G	-	ENSG00000168038	ULK4	protein_coding	Intergenic	.	.	Alu	0.727273
17	41934220	A->G	-	ENSG00000204815	TTC25	protein_coding	Intergenic	.	.	Alu	0.25
17	41934221	A->G	-	ENSG00000204815	TTC25	protein_coding	Intergenic	.	.	Alu	0.166667
22	41938177	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
17	41948414	A->G	-	ENSG00000204815	TTC25	protein_coding	Intergenic	.	.	Alu	0.307692
17	41948415	A->G	-	ENSG00000204815	TTC25	protein_coding	Intergenic	.	.	Alu	0.461538
17	41956145	A->G	-	ENSG00000204815	TTC25	protein_coding	Intergenic	.	.	Alu	0.4
3	42018975	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.111111
3	42019002	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.117647
3	42019018	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.333333
3	42019028	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.3
3	42019071	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.4
3	42019072	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.6
3	42023037	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.214286
8	42031692	A->G	-	ENSG00000083168	KAT6A	protein_coding	Intergenic	.	.	Alu	0.153846
3	42075293	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.181818
3	42075295	A->G	+	ENSG00000182606	TRAK1	protein_coding	Intergenic	.	.	Alu	0.333333
15	42238740	A->G	-	ENSG00000103978	TMEM87A	protein_coding	Intergenic	.	.	Alu	0.4
2	42259167	A->G	+	ENSG00000143924	EML4	protein_coding	Intergenic	.	.	Alu	0.8
2	42259168	A->G	+	ENSG00000143924	EML4	protein_coding	Intergenic	.	.	Alu	0.6
1	42301288	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.166667
1	42301301	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.4
1	42301333	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	1
17	42321065	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.2
1	42328763	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.190476
1	42328764	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.0952381
1	42328773	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.111111
1	42328837	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.363636
1	42328862	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.230769
1	42328866	A->G	-	ENSG00000198815	FOXJ3	protein_coding	Intergenic	.	.	Alu	0.461538
12	42359859	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.166667
12	42359879	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.166667
12	42359893	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.2
12	42359898	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.454545
12	42359929	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.166667
12	42359931	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.25
12	42359932	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.2
12	42360049	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intergenic	.	.	Alu	0.142857
8	42362964	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.181818
8	42362969	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.272727
8	42363034	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.181818
8	42363039	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.368421
8	42363049	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.15
8	42363325	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.7
8	42363374	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.2
8	42363407	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.26087
8	42363439	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.0833333
8	42363443	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	1
8	42363449	A->G	+	ENSG00000070501	POLB	protein_coding	Intergenic	.	.	Alu	0.15
17	42363647	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.1
17	42363655	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.136364
17	42363725	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.133333
17	42368637	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.105263
17	42368638	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.105263
17	42370536	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.166667
17	42370537	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.272727
17	42370545	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.166667
17	42370806	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.2
17	42382656	A->G	-	ENSG00000168610	STAT3	protein_coding	Intergenic	.	.	Alu	0.0833333
15	42508210	A->G	+	ENSG00000092531	SNAP23	protein_coding	Intergenic	.	.	Alu	0.142857
8	42531826	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.208333
8	42531891	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.318182
8	42531895	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0869565
8	42531915	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.142857
8	42531916	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.157895
8	42531924	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.176471
8	42531930	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.263158
8	42531957	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.307692
8	42532022	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.5625
8	42532030	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.176471
8	42532032	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.705882
8	42532045	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.5
8	42532056	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0869565
8	42532061	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0952381
8	42533581	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.333333
8	42533582	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.142857
8	42533722	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.230769
8	42533756	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.583333
8	42533771	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.25
8	42533784	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.722222
8	42533796	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.157895
8	42533797	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.333333
8	42533823	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.136364
8	42533826	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0833333
8	42533827	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0909091
8	42533832	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.15
8	42533838	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.117647
8	42533887	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.4
8	42533900	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.0740741
8	42534082	A->G	-	ENSG00000168575	SLC20A2	protein_coding	Intergenic	.	.	Alu	0.181818
22	42563048	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.125
22	42563081	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.111111
22	42563084	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.222222
22	42563085	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	1
22	42563116	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.294118
22	42563147	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0869565
22	42563155	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0833333
22	42563160	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0833333
22	42563383	A->G	-	ENSG00000182841	RRP7BP	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.8125
3	42603089	A->G	+	ENSG00000114857	NKTR	protein_coding	Intergenic	.	.	Alu	0.0245902
3	42618088	A->G	+	ENSG00000114857	NKTR	protein_coding	Intergenic	.	.	Alu	0.3
3	42618334	A->G	+	ENSG00000114857	NKTR	protein_coding	Intergenic	.	.	Alu	0.142857
22	42733809	A->G	+	.	.	.	Intergenic	.	.	Alu	1
22	42733810	A->G	+	.	.	.	Intergenic	.	.	Alu	1
22	42733834	A->G	+	.	.	.	Intergenic	.	.	Alu	1
22	42804184	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.3
10	42806573	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.2
10	42806574	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.4
10	42806614	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.272727
10	42806615	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.363636
10	42806637	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.2
10	42806647	A->G	+	ENSG00000165733	BMS1	protein_coding	Intergenic	.	.	Alu	0.272727
21	42832241	A->G	-	ENSG00000225218	AP001628.1	lincRNA	Intergenic	.	.	Alu	0.142857
22	42836054	A->G	-	ENSG00000242247	ARFGAP3	protein_coding	Intergenic	.	.	Alu	0.5
6	42940300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.833333
8	42941450	A->G	+	ENSG00000168172	HOOK3	protein_coding	Intergenic	.	.	Alu	0.705882
8	42941463	A->G	+	ENSG00000168172	HOOK3	protein_coding	Intergenic	.	.	Alu	0.722222
8	42941468	A->G	+	ENSG00000168172	HOOK3	protein_coding	Intergenic	.	.	Alu	0.0952381
6	42977315	A->G	-	ENSG00000124587	PEX6	protein_coding	Intergenic	.	.	Alu	0.3
8	43004425	A->G	+	ENSG00000168172	HOOK3	protein_coding	Intergenic	.	.	Alu	1
8	43004426	A->G	+	ENSG00000168172	HOOK3	protein_coding	Intergenic	.	.	Alu	0.666667
22	43009955	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.363636
22	43010007	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.583333
22	43010008	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.25
22	43010010	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.333333
22	43010058	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.153846
22	43010073	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.117647
22	43010074	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.125
22	43010147	A->G	-	ENSG00000100266	PACSIN2	protein_coding	Intergenic	.	.	Alu	0.25
8	43070092	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	1
8	43070093	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.266667
8	43070095	A->G	+	ENSG00000254673	AC110275.1	protein_coding	Intergenic	.	.	Alu	0.133333
5	43076789	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.1
22	43126282	A->G	-	ENSG00000100290	BIK	protein_coding	Intergenic	.	.	Alu	0.95
22	43126283	A->G	-	ENSG00000100290	BIK	protein_coding	Intergenic	.	.	Alu	1
5	43128383	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.148148
5	43128393	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.103448
5	43128401	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0967742
5	43128402	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.1875
5	43128470	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.217391
5	43128472	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.272727
5	43128477	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.105263
5	43128506	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
5	43128507	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
5	43129706	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.25
5	43130056	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	1
5	43130059	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.166667
5	43130065	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0952381
5	43130082	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.103448
5	43130112	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.1
5	43130113	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.09375
5	43130117	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.125
5	43130125	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.172414
5	43130130	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.103448
5	43130143	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.666667
5	43130184	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.423077
5	43130185	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.428571
5	43130192	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.08
5	43130216	A->G	+	ENSG00000172262	ZNF131	protein_coding	Intergenic	.	.	Alu	0.0714286
10	43140125	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.133333
10	43140157	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	43140159	A->G	+	ENSG00000169826	CSGALNACT2	protein_coding	Intergenic	.	.	Alu	0.1
2	43173038	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
17	43214991	A->G	+	ENSG00000184988	TMEM106A	protein_coding	Intergenic	.	.	Alu	0.2
17	43226120	A->G	+	ENSG00000236383	LINC00854	protein_coding	Intergenic	.	.	Alu	0.117647
17	43226139	A->G	+	ENSG00000236383	LINC00854	protein_coding	Intergenic	.	.	Alu	0.125
15	43419457	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.636364
15	43419458	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.636364
15	43419488	A->G	-	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	0.105263
11	43473028	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.25
11	43473054	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.230769
11	43473064	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.307692
11	43473081	A->G	+	ENSG00000052841	TTC17	protein_coding	Intergenic	.	.	Alu	0.2
15	43477308	A->G	+	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	1
15	43477315	A->G	+	ENSG00000067369	TP53BP1	protein_coding	Intergenic	.	.	Alu	1
20	43518906	A->G	+	ENSG00000185513	L3MBTL1	protein_coding	Intergenic	.	.	Alu	0.2
5	43541253	A->G	-	ENSG00000172239	PAIP1	protein_coding	Intergenic	.	.	Alu	0.105263
1	43661353	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.545455
1	43661354	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.25
1	43661359	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.769231
1	43661397	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.823529
1	43661423	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.294118
1	43661430	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.111111
1	43661431	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.266667
1	43661472	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.545455
1	43661485	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.529412
1	43661491	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.333333
1	43661495	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.318182
1	43661502	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.1
1	43661541	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.533333
1	43661550	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.181818
1	43661559	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.166667
1	43661566	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.181818
1	43675886	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.153846
1	43675887	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.153846
1	43675950	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.454545
1	43675953	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.272727
1	43676163	A->G	+	ENSG00000066135	KDM4A	protein_coding	Intergenic	.	.	Alu	0.181818
20	43685032	A->G	+	ENSG00000101057	MYBL2	protein_coding	Intergenic	.	.	Alu	0.3
15	43760346	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.583333
15	43760376	A->G	+	ENSG00000167004	PDIA3	protein_coding	Intergenic	.	.	Alu	0.133333
15	43844500	A->G	+	ENSG00000092470	WDR76	protein_coding	Intergenic	.	.	Alu	0.416667
15	43845211	A->G	+	ENSG00000092470	WDR76	protein_coding	Intergenic	.	.	Alu	0.181818
15	43846822	A->G	+	ENSG00000092470	WDR76	protein_coding	Intergenic	.	.	Alu	0.2
11	43857701	A->G	+	ENSG00000246250	AC087521.2	antisense	Intergenic	.	.	Alu	0.125
11	43857717	A->G	+	ENSG00000246250	AC087521.2	antisense	Intergenic	.	.	Alu	0.357143
7	43996722	A->G	-	ENSG00000214783	POLR2J4	processed_transcript	Intergenic	.	.	Alu	0.5
7	43996723	A->G	-	ENSG00000214783	POLR2J4	processed_transcript	Intergenic	.	.	Alu	0.5
2	44199111	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.428571
2	44199137	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.3
2	44199138	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.166667
2	44199208	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.125
2	44199368	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0909091
2	44199374	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.1
2	44209614	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.272727
2	44209616	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.181818
2	44209630	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.181818
2	44212962	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.153846
2	44223554	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.363636
2	44223631	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.583333
2	44223632	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.416667
2	44223669	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0769231
2	44223673	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.214286
2	44223695	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.451613
2	44223705	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0810811
2	44223722	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.1
2	44223737	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.36
2	44223766	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.666667
2	44223773	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.0909091
2	44224376	A->G	+	ENSG00000138032	PPM1B	protein_coding	Intergenic	.	.	Alu	0.25
11	44238030	A->G	+	ENSG00000151348	EXT2	protein_coding	Intergenic	.	.	Alu	0.2
1	44434565	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.75
1	44434596	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.5
1	44434606	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.5
1	44434637	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.176471
1	44434638	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.125
1	44434893	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.2
1	44434960	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44434969	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44435819	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.363636
17	44445571	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.166667
17	44445578	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.12
17	44445631	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.411765
17	44445644	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.230769
17	44445651	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44445699	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.3
17	44445700	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.25
17	44445730	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.153846
17	44445737	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44447743	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.105263
1	44451104	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.142857
1	44451124	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.12
1	44463215	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.294118
1	44463216	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.277778
1	44463270	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.315789
1	44475891	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.133333
1	44475927	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.227273
1	44475932	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.16
1	44475975	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.09375
1	44475981	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.0833333
1	44481221	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.166667
17	44488195	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.142857
17	44488312	A->G	-	ENSG00000186566	GPATCH8	protein_coding	Intergenic	.	.	Alu	0.166667
1	44495034	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.916667
1	44495035	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.916667
1	44495066	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.923077
1	44503214	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.181818
1	44503246	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.133333
1	44503249	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.357143
1	44503254	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.153846
1	44503255	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.333333
1	44503316	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.125
1	44503322	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.235294
15	44505505	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.181818
15	44505544	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.333333
15	44505545	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.25
15	44505613	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.166667
15	44505614	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.142857
15	44505623	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.125
15	44505675	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.25
15	44505691	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.157895
15	44511978	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.166667
20	44515689	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.176471
20	44515852	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.6
20	44515854	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.166667
20	44515879	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.3
20	44516426	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.266667
20	44516460	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.117647
20	44516485	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.384615
20	44516490	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.3
20	44516527	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.333333
20	44516528	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.222222
20	44516563	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.315789
20	44516567	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.0909091
20	44516569	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	1
20	44516608	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.357143
20	44516615	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	1
20	44516634	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.214286
20	44516664	A->G	-	ENSG00000132824	SERINC3	protein_coding	Intergenic	.	.	Alu	0.230769
15	44522073	A->G	+	ENSG00000137770	CTDSPL2	protein_coding	Intergenic	.	.	Alu	0.2
1	44527805	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.75
1	44527811	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.454545
1	44527815	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.833333
1	44527878	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.25
1	44527883	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.909091
15	44544925	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.181818
15	44549620	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.333333
15	44549647	A->G	+	ENSG00000104131	EIF3J	protein_coding	Intergenic	.	.	Alu	0.25
7	44576838	A->G	-	.	.	.	Intergenic	.	.	Alu	0.6
7	44576906	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
15	44601439	A->G	-	ENSG00000104133	SPG11	protein_coding	Intergenic	.	.	Alu	0.2
1	44627127	A->G	+	ENSG00000187147	RNF220	protein_coding	Intergenic	.	.	Alu	0.03125
7	44812306	A->G	-	ENSG00000196262	PPIA	protein_coding	Intergenic	.	.	Alu	0.2
7	44834818	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0444444
7	44834819	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0566038
7	44834852	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0857143
7	44834875	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0714286
7	44834894	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0952381
7	44834907	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.302326
7	44834921	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0967742
7	44836002	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.117647
7	44836020	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0833333
7	44836027	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.194444
7	44836028	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.189189
7	44836077	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0606061
7	44836085	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.15625
7	44836093	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0666667
7	44836095	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.117647
7	44838082	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.578947
7	44838099	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.407407
7	44838109	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.0869565
7	44838148	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.2
7	44838245	A->G	-	ENSG00000105968	H2AFV	protein_coding	Intergenic	.	.	Alu	0.181818
17	44867357	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.307692
17	44867415	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.166667
17	44867416	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.333333
17	44867464	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.142857
17	44867468	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.142857
17	44867470	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.214286
17	44867508	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.666667
17	44867532	A->G	-	ENSG00000108883	EFTUD2	protein_coding	Intergenic	.	.	Alu	0.5625
X	44883609	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.166667
X	44883836	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0666667
X	44883848	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0322581
X	44883853	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.285714
X	44883888	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.666667
X	44883913	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.189655
X	44883916	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.148148
X	44883917	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.346154
X	44883919	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0681818
X	44883925	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0512821
X	44883932	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.117647
X	44883951	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0465116
X	44883955	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.261905
X	44883981	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.192982
X	44883982	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.280702
X	44883987	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0701754
X	44884004	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0754717
X	44884016	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.214286
X	44884023	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.142857
X	44884047	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.14
X	44884054	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.113208
X	44884062	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.183673
X	44892754	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0869565
X	44892819	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.136364
X	44892838	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.25
X	44892841	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.153846
X	44892842	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.115385
X	44892856	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.12
X	44893053	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0869565
X	44893060	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0689655
X	44893064	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.25
X	44893081	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.126761
X	44893096	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0344828
X	44893104	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0819672
X	44893107	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.267857
X	44893109	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0384615
X	44893116	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.22807
X	44893118	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0746269
X	44893138	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.288136
X	44893184	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.037037
X	44893185	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.037037
X	44953999	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.214286
X	44964241	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.230769
X	44964328	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.55
X	44964355	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.230769
19	45003216	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.153846
19	45006759	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.2
19	45006802	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.263158
19	45006803	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.111111
19	45006848	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.0952381
19	45007973	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.1
X	45010260	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0666667
19	45012534	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.0869565
19	45012582	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.137931
19	45012584	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.107143
19	45012585	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.0714286
19	45012597	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.117647
19	45012621	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.0666667
19	45012629	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.192308
19	45012785	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.16
19	45012802	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.166667
19	45012842	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.142857
19	45012884	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.2
19	45012928	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.1
19	45013577	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.105263
19	45013578	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.15
19	45013680	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.111111
19	45013685	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.117647
19	45013711	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.117647
19	45013712	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.235294
19	45013738	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.125
19	45013747	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.333333
19	45013764	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.227273
19	45013781	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.230769
19	45015722	A->G	+	ENSG00000104856	RELB	protein_coding	Intergenic	.	.	Alu	0.230769
X	45045332	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.0909091
X	45045511	A->G	+	ENSG00000147050	KDM6A	protein_coding	Intergenic	.	.	Alu	0.117647
19	45065269	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.133333
17	45065362	A->G	+	ENSG00000136448	NMT1	protein_coding	Intergenic	.	.	Alu	0.3
17	45065368	A->G	+	ENSG00000136448	NMT1	protein_coding	Intergenic	.	.	Alu	0.2
19	45066582	A->G	+	ENSG00000104859	CLASRP	protein_coding	Intergenic	.	.	Alu	0.272727
17	45076675	A->G	+	ENSG00000136448	NMT1	protein_coding	Intergenic	.	.	Alu	0.2
14	45092522	A->G	+	ENSG00000185246	PRPF39	protein_coding	Intergenic	.	.	Alu	0.181818
19	45094517	A->G	+	ENSG00000104866	PPP1R37	protein_coding	Intergenic	.	.	Alu	0.8
17	45153271	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.166667
17	45153432	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.307692
17	45153436	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.769231
17	45153547	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.153846
17	45153578	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.428571
17	45153593	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.266667
17	45153602	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.214286
17	45153613	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.153846
17	45153629	A->G	-	ENSG00000224505	AC138150.1	antisense	Intergenic	.	.	Alu	0.4375
17	45217138	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.130435
17	45217147	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.2
17	45217321	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.3
17	45217322	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.3
17	45217805	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.3
17	45218028	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.2
17	45218039	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.2
17	45218065	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.166667
17	45218075	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.7
17	45218205	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.0540541
17	45218235	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.396552
17	45218236	A->G	-	ENSG00000267121	AC008105.3	antisense	Intergenic	.	.	Alu	0.0327869
14	45220190	A->G	-	ENSG00000129534	MIS18BP1	protein_coding	Intergenic	.	.	Alu	0.166667
12	45250668	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.153846
12	45250950	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.2
12	45250993	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.428571
12	45251012	A->G	+	ENSG00000177119	ANO6	protein_coding	Intergenic	.	.	Alu	0.153846
13	45318248	A->G	+	.	.	.	Intergenic	.	.	Alu	0.909091
13	45344936	A->G	+	ENSG00000170919	TPT1-AS1	processed_transcript	Intergenic	.	.	Alu	0.5
13	45344976	A->G	+	ENSG00000170919	TPT1-AS1	processed_transcript	Intergenic	.	.	Alu	0.5
10	45486948	A->G	-	ENSG00000165406	8-Mar	protein_coding	Intergenic	.	.	Alu	0.545455
17	45506626	A->G	-	.	.	.	Intergenic	.	.	Alu	0.178571
17	45506631	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
17	45506636	A->G	-	.	.	.	Intergenic	.	.	Alu	0.354839
17	45506642	A->G	-	.	.	.	Intergenic	.	.	Alu	0.103448
17	45506660	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0967742
17	45506702	A->G	-	.	.	.	Intergenic	.	.	Alu	0.206897
17	45506728	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
17	45566298	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
17	45566307	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
17	45566332	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
17	45566333	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
1	45653587	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.388889
1	45653606	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.173913
1	45653611	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.181818
1	45656718	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.1
1	45656777	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.142857
1	45656781	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.133333
1	45656782	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.5
1	45656794	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.25
1	45656884	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.3
1	45656885	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.3
1	45671252	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.214286
1	45680341	A->G	-	ENSG00000159592	GPBP1L1	protein_coding	Intergenic	.	.	Alu	0.153846
7	45768410	A->G	+	ENSG00000214765	SEPT7P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	1
19	45857853	A->G	-	ENSG00000125755	SYMPK	protein_coding	Intergenic	.	.	Alu	0.181818
12	45899101	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.153846
12	45899107	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.2
12	45899151	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.380952
12	45899161	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.25
12	45899165	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.666667
12	45899227	A->G	+	ENSG00000189079	ARID2	protein_coding	Intergenic	.	.	Alu	0.363636
12	45936175	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.5
12	45936176	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.230769
12	45936218	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.454545
12	45954662	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.190476
12	45954668	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.157895
12	45954685	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0625
12	45954718	A->G	-	ENSG00000139218	SCAF11	protein_coding	Intergenic	.	.	Alu	0.0555556
10	45991496	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.2
10	45991497	A->G	+	ENSG00000265354	TIMM23	protein_coding	Intergenic	.	.	Alu	0.214286
17	46049311	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.08
17	46049313	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.6
17	46049314	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.391304
17	46049373	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.8125
17	46049374	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.875
17	46049382	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.571429
17	46062451	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.666667
17	46062482	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.176471
17	46062487	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.25
17	46062536	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.272727
17	46062537	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.272727
17	46062538	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.181818
17	46062541	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.571429
17	46062554	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.125
17	46062578	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.285714
18	46064353	A->G	-	ENSG00000152229	PSTPIP2	protein_coding	Intergenic	.	.	Alu	0.25
18	46064359	A->G	-	ENSG00000152229	PSTPIP2	protein_coding	Intergenic	.	.	Alu	0.153846
18	46064429	A->G	-	ENSG00000152229	PSTPIP2	protein_coding	Intergenic	.	.	Alu	0.125
18	46064455	A->G	-	ENSG00000152229	PSTPIP2	protein_coding	Intergenic	.	.	Alu	0.5
17	46148641	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.346154
17	46148672	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.318182
17	46148676	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.130435
17	46148711	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.3125
17	46148723	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.5625
17	46148780	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.214286
17	46148823	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.181818
17	46148828	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.636364
22	46154936	A->G	+	ENSG00000186951	PPARA	protein_coding	Intergenic	.	.	Alu	0.1875
17	46155192	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intergenic	.	.	Alu	0.454545
21	46271426	A->G	-	ENSG00000160294	MCM3AP	protein_coding	Intergenic	.	.	Alu	0.916667
1	46272270	A->G	-	ENSG00000085999	RAD54L	protein_coding	Intergenic	.	.	Alu	0.2
19	46285996	A->G	+	.	.	.	Intergenic	.	.	Alu	0.846154
21	46299001	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
1	46305243	A->G	+	ENSG00000173660	UQCRH	protein_coding	Intergenic	.	.	Alu	0.153846
21	46461177	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.9
21	46461183	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.272727
21	46461187	A->G	+	ENSG00000160305	DIP2A	protein_coding	Intergenic	.	.	Alu	0.636364
11	46575782	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.272727
11	46575787	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.181818
11	46575788	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.181818
11	46575790	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	1
11	46575796	A->G	-	ENSG00000110497	AMBRA1	protein_coding	Intergenic	.	.	Alu	0.166667
13	46585400	A->G	+	ENSG00000136141	LRCH1	protein_coding	Intergenic	.	.	Alu	0.923077
13	46585417	A->G	+	ENSG00000136141	LRCH1	protein_coding	Intergenic	.	.	Alu	0.75
11	46625142	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.133333
11	46627852	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.25
11	46627883	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.125
11	46627884	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.176471
11	46627900	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.25
2	46632019	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
11	46636437	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.7
11	46636443	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.3
11	46636451	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.272727
2	46639287	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
2	46639293	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
2	46639301	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
16	46654781	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
16	46654811	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	46655074	A->G	-	ENSG00000065923	SLC9A7	protein_coding	Intergenic	.	.	Alu	0.363636
X	46655082	A->G	-	ENSG00000065923	SLC9A7	protein_coding	Intergenic	.	.	Alu	0.4
11	46658770	A->G	+	ENSG00000175224	ATG13	protein_coding	Intergenic	.	.	Alu	0.3
19	46708380	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.111111
19	46708420	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.166667
19	46708462	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.3
19	46708533	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.2
19	46708586	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46709202	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46709424	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.142857
19	46709440	A->G	-	ENSG00000105287	PRKD2	protein_coding	Intergenic	.	.	Alu	0.153846
2	46733453	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.3
2	46733476	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.333333
2	46733493	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.117647
2	46733498	A->G	+	ENSG00000171150	SOCS5	protein_coding	Intergenic	.	.	Alu	0.333333
11	46831933	A->G	-	ENSG00000175216	CKAP5	protein_coding	Intergenic	.	.	Alu	0.117647
11	46831953	A->G	-	ENSG00000175216	CKAP5	protein_coding	Intergenic	.	.	Alu	0.142857
11	46831976	A->G	-	ENSG00000175216	CKAP5	protein_coding	Intergenic	.	.	Alu	0.2
22	46960918	A->G	+	ENSG00000054611	TBC1D22A	protein_coding	Intergenic	.	.	Alu	0.5
3	46975373	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.142857
3	46975450	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.230769
3	46975451	A->G	-	ENSG00000160799	CCDC12	protein_coding	Intergenic	.	.	Alu	0.230769
2	47017246	A->G	+	ENSG00000068724	TTC7A	protein_coding	Intergenic	.	.	Alu	0.117647
2	47017251	A->G	+	ENSG00000068724	TTC7A	protein_coding	Intergenic	.	.	Alu	0.117647
3	47100071	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.0740741
3	47100107	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.0769231
3	47100114	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.2
3	47132257	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.3
3	47132277	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	1
3	47138177	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.533333
3	47138808	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.2
3	47150209	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.333333
3	47160412	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.181818
3	47160429	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.333333
3	47160438	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.285714
3	47160513	A->G	-	ENSG00000181555	SETD2	protein_coding	Intergenic	.	.	Alu	0.272727
17	47169030	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.117647
17	47169106	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.277778
17	47169110	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.1
17	47169115	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.0869565
17	47169129	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.181818
17	47169155	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.214286
17	47169173	A->G	-	ENSG00000004897	CDC27	protein_coding	Intergenic	.	.	Alu	0.181818
19	47179409	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.181818
19	47191933	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.466667
19	47191939	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.384615
19	47191943	A->G	+	ENSG00000142230	SAE1	protein_coding	Intergenic	.	.	Alu	0.166667
3	47224711	A->G	+	ENSG00000227398	KIF9-AS1	antisense	Intergenic	.	.	Alu	1
11	47232250	A->G	+	ENSG00000134574	DDB2	protein_coding	Intergenic	.	.	Alu	0.470588
11	47232272	A->G	+	ENSG00000134574	DDB2	protein_coding	Intergenic	.	.	Alu	0.529412
20	47288558	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.166667
20	47288572	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.235294
20	47288595	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.380952
20	47288597	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.0833333
20	47288621	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.08
20	47288630	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.3
20	47288660	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.333333
20	47288662	A->G	-	ENSG00000101040	ZMYND8	protein_coding	Intergenic	.	.	Alu	0.28
11	47294408	A->G	+	ENSG00000110514	MADD	protein_coding	Intergenic	.	.	Alu	0.3
16	47301545	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.636364
16	47301599	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.5
16	47301600	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.3
3	47332287	A->G	+	ENSG00000114648	KLHL18	protein_coding	Intergenic	.	.	Alu	0.454545
11	47367823	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47367825	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47367882	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.333333
11	47367896	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.25
11	47367925	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.125
11	47367947	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.0869565
11	47367960	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.5
11	47367962	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.157895
11	47367981	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.764706
11	47367982	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.277778
11	47367987	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.117647
11	47367990	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.125
11	47368026	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.2
11	47372271	A->G	-	ENSG00000066336	SPI1	protein_coding	Intergenic	.	.	Alu	0.666667
11	47381718	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0666667
2	47394987	A->G	-	.	.	.	Intergenic	.	.	Alu	1
2	47405235	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.230769
2	47405244	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	1
2	47405245	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.214286
2	47405259	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.153846
2	47405265	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.133333
2	47405275	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.333333
16	47409544	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.181818
16	47409553	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.5
16	47409554	A->G	-	ENSG00000129636	ITFG1	protein_coding	Intergenic	.	.	Alu	0.583333
2	47428292	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.272727
2	47428296	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.25
2	47428308	A->G	+	ENSG00000095002	MSH2	protein_coding	Intergenic	.	.	Alu	0.25
20	47450161	A->G	-	.	.	.	Intergenic	.	.	Alu	0.909091
11	47480817	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.52
11	47480818	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.208333
11	47480879	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.235294
11	47480887	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.714286
11	47480924	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.45
11	47480957	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.105263
11	47481147	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.3125
11	47481172	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.09375
11	47481265	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
11	47481292	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
11	47481300	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.210526
11	47481323	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.190476
11	47481324	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
11	47481362	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.322581
11	47481411	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.1
17	47488786	A->G	-	ENSG00000228782	MRPL45P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.117647
17	47488813	A->G	-	ENSG00000228782	MRPL45P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.157895
17	47488875	A->G	-	ENSG00000228782	MRPL45P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0606061
17	47488921	A->G	-	ENSG00000228782	MRPL45P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.0952381
20	47510169	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.133333
20	47510213	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.0952381
20	47510245	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.130435
20	47510354	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.111111
11	47512226	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.125
11	47512348	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.15
11	47512349	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.15
11	47512354	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.130435
20	47512447	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.272727
11	47513522	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.181818
11	47513592	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.176471
11	47513598	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47514067	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.384615
11	47514093	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.375
11	47514096	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.375
11	47514098	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intergenic	.	.	Alu	0.1875
20	47516872	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47519180	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.333333
20	47519233	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.545455
20	47519807	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.181818
20	47519819	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.2
20	47519932	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.153846
20	47519944	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.153846
20	47520014	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.176471
20	47520036	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	47534121	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.545455
11	47534122	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47534125	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.230769
11	47534132	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
11	47534166	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.7
11	47534167	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.210526
11	47534177	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.25
11	47534193	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.133333
11	47534200	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47534209	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	47537316	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.4
11	47537452	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.2
11	47542552	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.137931
11	47542569	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.205882
11	47542590	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.333333
11	47542594	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.111111
11	47542630	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.307692
11	47542635	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.241379
11	47542636	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0714286
11	47542656	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.111111
11	47542658	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47542662	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.115385
11	47542668	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0952381
11	47542701	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
11	47542722	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47542723	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.0909091
11	47542735	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.214286
11	47542748	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.1875
11	47542749	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.117647
11	47542770	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.142857
11	47542771	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.357143
11	47542779	A->G	-	ENSG00000149187	CELF1	protein_coding	Intergenic	.	.	Alu	0.153846
20	47548356	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.6
20	47548357	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.6
20	47548359	A->G	+	ENSG00000124151	NCOA3	protein_coding	Intergenic	.	.	Alu	0.3
11	47569265	A->G	+	ENSG00000110536	PTPMT1	protein_coding	Intergenic	.	.	Alu	0.3
3	47601709	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
6	47609592	A->G	+	ENSG00000198087	CD2AP	protein_coding	Intergenic	.	.	Alu	0.0652174
3	47672893	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47672903	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.5
3	47672916	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.285714
3	47675014	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.181818
3	47708297	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.153846
3	47708305	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.25
3	47708308	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.176471
3	47708320	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.3
3	47708337	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.25
3	47708342	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.181818
3	47722426	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47722435	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47722499	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47727997	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.307692
3	47728010	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.166667
3	47728154	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.153846
3	47728155	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.642857
3	47728235	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.1
3	47728289	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.461538
3	47728290	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.5
3	47728315	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.142857
3	47728369	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.263158
3	47737867	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.166667
8	47749371	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
11	47765936	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.0740741
11	47765942	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.0740741
11	47765953	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.0909091
11	47765958	A->G	-	ENSG00000109920	FNBP4	protein_coding	Intergenic	.	.	Alu	0.08
3	47780283	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.2
3	47780309	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.25
3	47780323	A->G	-	ENSG00000173473	SMARCC1	protein_coding	Intergenic	.	.	Alu	0.117647
8	47786368	A->G	-	ENSG00000253729	PRKDC	protein_coding	Intergenic	.	.	Alu	0.785714
8	47786909	A->G	-	ENSG00000253729	PRKDC	protein_coding	Intergenic	.	.	Alu	0.4
8	47786912	A->G	-	ENSG00000253729	PRKDC	protein_coding	Intergenic	.	.	Alu	0.454545
8	47786945	A->G	-	ENSG00000253729	PRKDC	protein_coding	Intergenic	.	.	Alu	0.25
2	47793082	A->G	+	ENSG00000116062	MSH6	protein_coding	Intergenic	.	.	Alu	0.2
2	47793374	A->G	+	ENSG00000116062	MSH6	protein_coding	Intergenic	.	.	Alu	0.2
2	47793375	A->G	+	ENSG00000116062	MSH6	protein_coding	Intergenic	.	.	Alu	0.2
2	47793381	A->G	+	ENSG00000116062	MSH6	protein_coding	Intergenic	.	.	Alu	0.272727
2	47825669	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.307692
2	47825705	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.181818
3	47833604	A->G	+	ENSG00000132153	DHX30	protein_coding	Intergenic	.	.	Alu	0.142857
2	47878425	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.142857
2	47878434	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.296296
2	47878468	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0714286
2	47878485	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.304348
2	47878489	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.772727
2	47878532	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.5
2	47878533	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.285714
2	47878539	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.666667
2	47878569	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.310345
2	47878575	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0666667
2	47878576	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.4
2	47878629	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.3
2	47878634	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.206897
2	47878635	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.148148
2	47878641	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.238095
2	47878651	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.454545
2	47878857	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.117647
2	47878867	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.157895
2	47878879	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.142857
2	47878896	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.133333
2	47878897	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.333333
2	47878919	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.545455
2	47878927	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.363636
2	47896408	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0769231
2	47896427	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0833333
2	47896454	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.047619
2	47896468	A->G	-	ENSG00000138081	FBXO11	protein_coding	Intergenic	.	.	Alu	0.0526316
8	48015122	A->G	+	ENSG00000169139	UBE2V2	protein_coding	Intergenic	.	.	Alu	0.2
3	48048661	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.384615
3	48048684	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.133333
3	48066965	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.166667
3	48070301	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.1875
3	48070302	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.125
3	48070529	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.181818
3	48070530	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.272727
3	48070540	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.3
3	48070573	A->G	-	ENSG00000047849	MAP4	protein_coding	Intergenic	.	.	Alu	0.3
4	48141748	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.235294
4	48141772	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.27027
4	48141785	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.837838
4	48141811	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.103448
4	48141820	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.684211
4	48141821	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.2
4	48141847	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.0625
4	48141878	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.375
4	48141886	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.9
4	48141900	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.6
4	48141926	A->G	-	ENSG00000135605	TEC	protein_coding	Intergenic	.	.	Alu	0.285714
10	48356722	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.214286
10	48356739	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.173913
10	48356748	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.142857
16	48366999	A->G	-	ENSG00000196470	SIAH1	protein_coding	Intergenic	.	.	Alu	0.190476
16	48367035	A->G	-	ENSG00000196470	SIAH1	protein_coding	Intergenic	.	.	Alu	0.3
10	48380103	A->G	+	ENSG00000107643	MAPK8	protein_coding	Intergenic	.	.	Alu	0.2
19	48458816	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.8
19	48458986	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.166667
19	48461133	A->G	+	ENSG00000182324	KCNJ14	protein_coding	Intergenic	.	.	Alu	0.333333
12	48664128	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.142857
12	48664507	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.181818
12	48664620	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.153846
12	48664718	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.181818
12	48664741	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.214286
12	48664787	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.125
12	48664855	A->G	-	ENSG00000139620	KANSL2	protein_coding	Intergenic	.	.	Alu	0.0909091
3	48697291	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.125
3	48697363	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.157895
3	48697364	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.097561
3	48697423	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.317073
3	48697426	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.128205
3	48697431	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.15625
3	48697437	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0909091
3	48697447	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0810811
3	48697458	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.0540541
3	48697622	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.166667
3	48702604	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.333333
3	48702608	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.642857
12	48707338	A->G	-	ENSG00000129315	CCNT1	protein_coding	Intergenic	.	.	Alu	0.181818
3	48714455	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.153846
3	48714503	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.294118
3	48714517	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.15
3	48714663	A->G	-	ENSG00000068745	IP6K2	protein_coding	Intergenic	.	.	Alu	0.2
X	48717912	A->G	-	ENSG00000232828	AC231533.1	antisense	Intergenic	.	.	Alu	1
X	48717913	A->G	-	ENSG00000232828	AC231533.1	antisense	Intergenic	.	.	Alu	1
17	48845724	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.0833333
4	48855744	A->G	+	ENSG00000109180	OCIAD1	protein_coding	Intergenic	.	.	Alu	0.181818
17	48865848	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.75
17	48865866	A->G	+	ENSG00000136436	CALCOCO2	protein_coding	Intergenic	.	.	Alu	0.75
17	48866782	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
17	48866853	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
17	48866855	A->G	+	.	.	.	Intergenic	.	.	Alu	0.15
17	48866856	A->G	+	.	.	.	Intergenic	.	.	Alu	0.15
17	48866958	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	48866962	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
17	48866989	A->G	+	.	.	.	Intergenic	.	.	Alu	0.176471
17	48867217	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
17	48867276	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
17	48867413	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
17	48867453	A->G	+	.	.	.	Intergenic	.	.	Alu	0.722222
12	48928137	A->G	-	ENSG00000272822	AC073610.3	protein_coding	Intergenic	.	.	Alu	0.117647
12	48928156	A->G	-	ENSG00000272822	AC073610.3	protein_coding	Intergenic	.	.	Alu	0.923077
12	48928177	A->G	-	ENSG00000272822	AC073610.3	protein_coding	Intergenic	.	.	Alu	0.142857
3	48939503	A->G	+	ENSG00000177479	ARIH2	protein_coding	Intergenic	.	.	Alu	0.125
13	48990497	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.181818
13	48990641	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.5
13	48990663	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.230769
13	48990664	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.153846
13	48991567	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.2
13	48991580	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.133333
13	48991609	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.5
13	48991675	A->G	+	ENSG00000102531	FNDC3A	protein_coding	Intergenic	.	.	Alu	0.153846
X	48994290	A->G	-	ENSG00000068400	GRIPAP1	protein_coding	Intergenic	.	.	Alu	0.142857
3	49010157	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.416667
3	49010285	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.909091
3	49010291	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.73913
3	49010295	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.909091
3	49010338	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.411765
3	49010355	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.692308
3	49010356	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.307692
3	49010445	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.133333
3	49010529	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.214286
3	49010530	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.642857
3	49010771	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.117647
3	49010838	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.307692
3	49010870	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.133333
3	49010896	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.1875
3	49010897	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.3125
3	49010906	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.266667
3	49010942	A->G	+	ENSG00000178252	WDR6	protein_coding	Intergenic	.	.	Alu	0.3
3	49064206	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.416667
3	49069699	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.2
20	49072000	A->G	+	ENSG00000124207	CSE1L	protein_coding	Intergenic	.	.	Alu	0.214286
3	49078567	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.111111
3	49078572	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.105263
3	49078573	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.157895
3	49078576	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.105263
3	49078600	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
3	49078624	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
3	49078788	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.285714
3	49078820	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.117647
3	49078856	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49086527	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.3
3	49088421	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.272727
3	49088525	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	1
3	49088583	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.166667
3	49088820	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.111111
3	49089180	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.214286
3	49089197	A->G	-	ENSG00000198218	QRICH1	protein_coding	Intergenic	.	.	Alu	0.230769
20	49137803	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.272727
20	49137804	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.5
20	49163488	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.125
20	49163498	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.3125
20	49163499	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.5
20	49163522	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.181818
20	49180435	A->G	-	ENSG00000124214	STAU1	protein_coding	Intergenic	.	.	Alu	0.153846
18	49232359	A->G	-	ENSG00000141627	DYM	protein_coding	Intergenic	.	.	Alu	0.416667
18	49232364	A->G	-	ENSG00000141627	DYM	protein_coding	Intergenic	.	.	Alu	0.5
18	49232383	A->G	-	ENSG00000141627	DYM	protein_coding	Intergenic	.	.	Alu	0.307692
17	49336244	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.3
17	49336601	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.153846
17	49339299	A->G	-	ENSG00000198740	ZNF652	protein_coding	Intergenic	.	.	Alu	0.125
3	49365633	A->G	-	ENSG00000235908	RHOA-IT1	sense_intronic	Intergenic	.	.	Alu	0.2
3	49368813	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0833333
3	49368819	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.375
3	49368823	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.125
3	49368824	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.166667
3	49368836	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0833333
3	49368846	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	1
3	49368872	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.153846
3	49368888	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.153846
3	49368936	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.545455
3	49368973	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.275862
3	49368974	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.266667
3	49368979	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.586207
3	49368980	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.4
3	49368988	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0869565
3	49369054	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0909091
3	49369110	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.357143
3	49407330	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.421053
3	49407336	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0731707
3	49407339	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.047619
3	49407371	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.104167
3	49407374	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.4
3	49407414	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.166667
3	49407417	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.225
3	49407429	A->G	-	ENSG00000067560	RHOA	protein_coding	Intergenic	.	.	Alu	0.0645161
14	49640489	A->G	+	.	.	.	Intergenic	.	.	Alu	1
14	49640490	A->G	+	.	.	.	Intergenic	.	.	Alu	1
14	49640494	A->G	+	.	.	.	Intergenic	.	.	Alu	1
11	49641740	A->G	+	ENSG00000205035	AC136759.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.470588
11	49641741	A->G	+	ENSG00000205035	AC136759.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.470588
14	49646555	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.833333
14	49657573	A->G	-	ENSG00000100479	POLE2	protein_coding	Intergenic	.	.	Alu	0.181818
20	49683461	A->G	-	ENSG00000158470	B4GALT5	protein_coding	Intergenic	.	.	Alu	0.181818
20	49683466	A->G	-	ENSG00000158470	B4GALT5	protein_coding	Intergenic	.	.	Alu	0.2
3	49740914	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49752963	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.333333
3	49752964	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.333333
3	49753056	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.181818
3	49763242	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.384615
3	49772675	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.3
3	49772676	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.2
3	49772935	A->G	-	ENSG00000176095	IP6K1	protein_coding	Intergenic	.	.	Alu	0.2
13	49788662	A->G	-	ENSG00000102753	KPNA3	protein_coding	Intergenic	.	.	Alu	0.25
14	49819987	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.115385
14	49820019	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.157895
14	49820020	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.210526
14	49820048	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.52381
14	49820057	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.1
14	49838614	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.0909091
14	49838615	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.130435
14	49838857	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.181818
14	49839170	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.266667
14	49839174	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.153846
14	49839175	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.142857
14	49839215	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.294118
14	49839216	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.117647
14	49839242	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.2
14	49839286	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.181818
14	49839295	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.153846
14	49839318	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.153846
14	49839353	A->G	-	ENSG00000165525	NEMF	protein_coding	Intergenic	.	.	Alu	0.2
22	49864760	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.181818
22	49869036	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.105263
22	49869039	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.1
22	49869073	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	1
22	49869102	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.111111
22	49878284	A->G	+	ENSG00000100426	ZBED4	protein_coding	Intergenic	.	.	Alu	0.272727
20	49939799	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.2
20	49939800	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.4
20	49939890	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	1
20	49939893	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.4
20	49939894	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.4
20	49939950	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.133333
20	49939957	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.388889
20	49939995	A->G	+	ENSG00000124226	RNF114	protein_coding	Intergenic	.	.	Alu	0.111111
10	49963795	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.166667
10	49963805	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.166667
10	49963831	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.125
10	49963910	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.117647
10	49969491	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.08
10	49969508	A->G	+	ENSG00000204152	TIMM23B	protein_coding	Intergenic	.	.	Alu	0.2
3	50010678	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.272727
3	50010756	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.25
3	50010782	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.5
3	50026703	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.153846
3	50026704	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.307692
3	50026705	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.230769
3	50032910	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.133333
3	50038672	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.117647
3	50038690	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.666667
3	50038706	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.190476
3	50038712	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.666667
3	50038722	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.666667
3	50038726	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.214286
13	50039090	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.272727
3	50040191	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
3	50040192	A->G	+	ENSG00000004534	RBM6	protein_coding	Intergenic	.	.	Alu	0.2
13	50065553	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.6875
13	50065564	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.357143
13	50065565	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.133333
13	50065569	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.352941
13	50065576	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.117647
13	50065621	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.333333
13	50065625	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.421053
13	50065631	A->G	-	ENSG00000231607	DLEU2	antisense	Intergenic	.	.	Alu	0.823529
3	50099076	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
3	50099148	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.533333
3	50099170	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.133333
3	50099180	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.142857
3	50099188	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.166667
3	50112216	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.181818
3	50112269	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.272727
3	50112273	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.15
3	50112274	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.142857
3	50112295	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.407407
3	50112305	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.26087
3	50112322	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0689655
3	50112337	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.0833333
3	50112360	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	1
3	50112361	A->G	+	ENSG00000003756	RBM5	protein_coding	Intergenic	.	.	Alu	0.275862
13	50118744	A->G	-	ENSG00000176124	DLEU1	processed_transcript	Intergenic	.	.	Alu	0.166667
14	50193314	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.4
14	50193315	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.4
14	50197749	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.28125
14	50197781	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0645161
14	50197821	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.171429
14	50197826	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.4
14	50197827	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.533333
14	50197884	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.1
14	50197886	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0869565
14	50197887	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.363636
14	50197892	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0833333
14	50197899	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.555556
14	50197907	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.0833333
14	50197923	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.275862
14	50197962	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.241379
14	50214932	A->G	-	ENSG00000100485	SOS2	protein_coding	Intergenic	.	.	Alu	0.117647
15	50297039	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.153846
17	50321998	A->G	-	.	.	.	Intergenic	.	.	Alu	0.5
17	50322033	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
17	50322057	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4
17	50322071	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
15	50324682	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.142857
15	50324683	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.214286
15	50324717	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.2
15	50324819	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.1
15	50324826	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.25
15	50330009	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.142857
15	50330045	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.125
15	50330071	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.153846
15	50331972	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.181818
15	50332003	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0666667
15	50332007	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0689655
15	50332039	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0689655
15	50332068	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.111111
15	50332076	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.259259
15	50332121	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	1
15	50332150	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.5
15	50334568	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0952381
15	50334575	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.136364
15	50334591	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.136364
15	50334596	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.238095
15	50334597	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.142857
15	50334605	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.133333
15	50334646	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.529412
15	50334672	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.173913
15	50334683	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.117647
3	50335347	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0967742
3	50335402	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	50335409	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0952381
3	50335428	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.105263
3	50335445	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.0967742
3	50335454	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.25
3	50335455	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.153846
3	50335518	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.125
3	50335591	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.217391
3	50335592	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.130435
3	50335626	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.125
3	50335662	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.333333
3	50335683	A->G	-	ENSG00000068028	RASSF1	protein_coding	Intergenic	.	.	Alu	0.230769
15	50346886	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.0588235
15	50346938	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.1
15	50347060	A->G	-	ENSG00000104064	GABPB1	protein_coding	Intergenic	.	.	Alu	0.2
22	50388807	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.3
22	50388822	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.230769
22	50394747	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.181818
22	50394752	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.166667
22	50394759	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.230769
22	50394820	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.2
22	50394896	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.153846
22	50396401	A->G	+	ENSG00000100239	PPP6R2	protein_coding	Intergenic	.	.	Alu	0.230769
19	50407780	A->G	-	ENSG00000062822	POLD1	protein_coding	Intergenic	.	.	Alu	1
12	50409882	A->G	+	ENSG00000161813	LARP4	protein_coding	Intergenic	.	.	Alu	0.761905
12	50529791	A->G	+	ENSG00000066084	DIP2B	protein_coding	Intergenic	.	.	Alu	0.2
12	50543856	A->G	+	ENSG00000066084	DIP2B	protein_coding	Intergenic	.	.	Alu	0.363636
12	50566708	A->G	+	ENSG00000066084	DIP2B	protein_coding	Intergenic	.	.	Alu	0.818182
15	50582208	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.545455
20	50588893	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.272727
20	50588935	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.666667
20	50588961	A->G	+	ENSG00000042062	RIPOR3	protein_coding	Intergenic	.	.	Alu	0.181818
15	50619359	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.4
15	50619398	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.166667
1	50642908	A->G	-	ENSG00000185104	FAF1	protein_coding	Intergenic	.	.	Alu	0.2
15	50656535	A->G	-	ENSG00000092439	TRPM7	protein_coding	Intergenic	.	.	Alu	0.181818
17	50727987	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.32
17	50727997	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.176471
17	50728038	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0769231
17	50728059	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.142857
17	50728063	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0909091
17	50728100	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.111111
17	50730115	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.583333
17	50730117	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.583333
17	50730138	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.454545
17	50730328	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.08
17	50730362	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0909091
17	50730365	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.130435
17	50730368	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.173913
17	50730374	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.136364
17	50730398	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.473684
17	50730400	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.409091
17	50730401	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.695652
17	50730450	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.56
17	50730464	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.52
17	50730465	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.269231
17	50730685	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.125
17	50730686	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.1875
17	50730731	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0869565
17	50730733	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0909091
17	50730734	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.0909091
17	50730855	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.384615
17	50730889	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.133333
17	50735109	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.181818
17	50735110	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.5
17	50735162	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.2
17	50735179	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.2
17	50735180	A->G	+	ENSG00000108848	LUC7L3	protein_coding	Intergenic	.	.	Alu	0.636364
16	50748427	A->G	+	ENSG00000083799	CYLD	protein_coding	Intergenic	.	.	Alu	0.3
16	50748428	A->G	+	ENSG00000083799	CYLD	protein_coding	Intergenic	.	.	Alu	0.3
14	50800907	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.294118
14	50803892	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.0689655
14	50803964	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.315789
14	50803965	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.277778
14	50804002	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.166667
14	50804020	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.2
14	50804101	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.272727
14	50804139	A->G	-	ENSG00000100503	NIN	protein_coding	Intergenic	.	.	Alu	0.2
20	50922640	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.15
20	50922704	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.357143
20	50922717	A->G	-	ENSG00000101126	ADNP	protein_coding	Intergenic	.	.	Alu	0.166667
1	50957424	A->G	-	ENSG00000185104	FAF1	protein_coding	Intergenic	.	.	Alu	0.142857
17	50991762	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.307692
17	50991992	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.142857
17	50991998	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.142857
17	50992087	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.142857
17	50998095	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.166667
17	50998128	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.05
17	50998129	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.295455
17	50998143	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.15
17	50998166	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.111111
17	50998207	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.166667
17	50998210	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	1
17	50998211	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	1
17	50998220	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	1
17	50998325	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.181818
17	51026702	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0540541
17	51026742	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0645161
17	51026744	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.0714286
17	51026892	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.181818
17	51026894	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.25
17	51026932	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.125
12	51050933	A->G	+	ENSG00000050426	LETMD1	protein_coding	Intergenic	.	.	Alu	0.923077
17	51083313	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.214286
17	51083355	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.4375
17	51083440	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	51086207	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.363636
17	51086222	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	51086759	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	1
17	51086774	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	1
17	51109279	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.333333
17	51109334	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.153846
17	51116118	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.1875
17	51116122	A->G	-	ENSG00000008294	SPAG9	protein_coding	Intergenic	.	.	Alu	0.1875
17	51215994	A->G	-	ENSG00000011258	MBTD1	protein_coding	Intergenic	.	.	Alu	0.142857
1	51251972	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.181818
1	51253443	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.2
1	51253486	A->G	+	ENSG00000123091	RNF11	protein_coding	Intergenic	.	.	Alu	0.166667
1	51368853	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.6
3	51425630	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.2
1	51429697	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.2
1	51451974	A->G	-	ENSG00000085832	EPS15	protein_coding	Intergenic	.	.	Alu	0.285714
3	51469314	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.142857
3	51469368	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	51469423	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.25
3	51469424	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	51469437	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.157895
3	51469462	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.416667
3	51469476	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.421053
3	51469502	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.0740741
20	51472902	A->G	-	ENSG00000101096	NFATC2	protein_coding	Intergenic	.	.	Alu	0.615385
20	51472910	A->G	-	ENSG00000101096	NFATC2	protein_coding	Intergenic	.	.	Alu	0.714286
20	51472916	A->G	-	ENSG00000101096	NFATC2	protein_coding	Intergenic	.	.	Alu	0.384615
3	51474741	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.181818
3	51485999	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.2
3	51486020	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.214286
3	51486024	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.266667
3	51486030	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.285714
3	51486085	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.285714
3	51486086	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.142857
3	51486093	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.153846
3	51486095	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	51486119	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.133333
3	51486169	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.153846
3	51486285	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.0869565
3	51486295	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.117647
3	51487046	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.181818
3	51487100	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.181818
3	51487104	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.2
3	51487175	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.153846
3	51487749	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	51487768	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.133333
3	51487813	A->G	-	ENSG00000145041	DCAF1	protein_coding	Intergenic	.	.	Alu	0.181818
3	51540980	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
3	51540983	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
1	51633427	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.181818
1	51643871	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.333333
1	51643897	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.166667
1	51644005	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.272727
1	51644019	A->G	+	ENSG00000117859	OSBPL9	protein_coding	Intergenic	.	.	Alu	0.181818
15	51849889	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.2
8	51873989	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.125
8	51874078	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.230769
8	51874118	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.0833333
8	51874119	A->G	-	ENSG00000168300	PCMTD1	protein_coding	Intergenic	.	.	Alu	0.0833333
8	51896057	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intergenic	.	.	Alu	0.207547
8	51896074	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intergenic	.	.	Alu	0.186441
8	51896083	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intergenic	.	.	Alu	0.171875
8	51896178	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intergenic	.	.	Alu	0.2
15	51916576	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.142857
15	51916593	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.176471
15	51917374	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.272727
15	51934888	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.4
15	51934940	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.2
15	51934941	A->G	+	ENSG00000138594	TMOD3	protein_coding	Intergenic	.	.	Alu	0.181818
15	51943619	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.181818
15	51943679	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.166667
15	51956411	A->G	+	ENSG00000166477	LEO1	protein_coding	Intergenic	.	.	Alu	0.384615
15	51974538	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.166667
15	51974741	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.4
15	51974779	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.2
15	51978990	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.2
15	51978996	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.272727
16	51995780	A->G	+	.	.	.	Intergenic	.	.	Alu	1
16	51995812	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
16	51995813	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
15	52027165	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.166667
15	52027216	A->G	+	ENSG00000069956	MAPK6	protein_coding	Intergenic	.	.	Alu	0.181818
19	52193650	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.2
19	52193910	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.6
19	52194033	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.272727
19	52194034	A->G	+	ENSG00000105568	PPP2R1A	protein_coding	Intergenic	.	.	Alu	0.416667
3	52301929	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	52301956	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
3	52302150	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
3	52302172	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	52414872	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.0714286
3	52414903	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.0789474
3	52414917	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.0540541
3	52414951	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.315789
3	52414953	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.526316
3	52414959	A->G	+	ENSG00000010318	PHF7	protein_coding	Intergenic	.	.	Alu	0.0909091
1	52440350	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.2
1	52440402	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.117647
1	52441380	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.454545
1	52441381	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.272727
1	52531984	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.25
1	52531985	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.545455
1	52532016	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.1875
1	52532026	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.933333
1	52532034	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.230769
1	52532039	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.25
1	52532055	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.166667
1	52532061	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.230769
1	52532083	A->G	-	ENSG00000134744	TUT4	protein_coding	Intergenic	.	.	Alu	0.2
15	52563013	A->G	-	ENSG00000128989	ARPP19	protein_coding	Intergenic	.	.	Alu	0.125
3	52591644	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.2
3	52591657	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.25
3	52591684	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.230769
1	52621584	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
3	52639494	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.142857
3	52639672	A->G	-	ENSG00000163939	PBRM1	protein_coding	Intergenic	.	.	Alu	0.3
19	52641615	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.2
19	52642505	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.166667
19	52647481	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.181818
19	52647486	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.333333
19	52647541	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.214286
19	52688273	A->G	-	ENSG00000167766	ZNF83	protein_coding	Intergenic	.	.	Alu	0.333333
8	52698438	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0540541
8	52698455	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0434783
8	52698482	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0540541
8	52698514	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.108696
8	52698518	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.04
8	52698533	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0588235
8	52698584	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0512821
8	52698779	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.027027
8	52698788	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0361446
8	52698796	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0309278
8	52698797	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.222222
8	52698802	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.444444
8	52698806	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0333333
8	52698828	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.333333
8	52698838	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.197183
8	52698854	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.521127
8	52698857	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0263158
8	52698862	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.139241
8	52698865	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0289855
8	52698868	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0416667
8	52698869	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0289855
8	52698871	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.028169
8	52698899	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.542857
8	52698907	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0425532
8	52698909	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0652174
8	52698918	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0638298
8	52698923	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0625
8	52698928	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.608696
8	52698933	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.463415
8	52698937	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0769231
8	52698963	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.125
8	52698964	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.125
8	52701215	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.555556
8	52701219	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.230769
8	52701237	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.1875
8	52701328	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.117647
8	52701338	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.285714
8	52701352	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.181818
8	52701687	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.0714286
8	52706889	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.842105
8	52706904	A->G	-	ENSG00000023287	RB1CC1	protein_coding	Intergenic	.	.	Alu	0.85
14	52714633	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intergenic	.	.	Alu	0.4
19	52726323	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.2
19	52726353	A->G	-	ENSG00000213020	ZNF611	protein_coding	Intergenic	.	.	Alu	0.8
19	52925327	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.133333
19	52926255	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.2
19	52926495	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.285714
19	52926557	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.230769
19	52926596	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.266667
19	52926605	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.8
19	52926606	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.285714
19	52926926	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.2
19	52926965	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.142857
19	52926991	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.307692
19	52926995	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.272727
19	52927034	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.2
19	52927057	A->G	-	ENSG00000283088	AC010487.3	protein_coding	Intergenic	.	.	Alu	0.333333
19	52939480	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.214286
19	52940987	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.315789
19	52941014	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.125
19	52941024	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.588235
19	52941044	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.142857
19	52941063	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.25
19	52941090	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.25
19	52941150	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.157895
19	52941154	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.157895
19	52941182	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.2
19	52941200	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.608696
19	52941201	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.0909091
19	52941214	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.347826
12	53026006	A->G	+	ENSG00000063046	EIF4B	protein_coding	Intergenic	.	.	Alu	0.363636
16	53057533	A->G	+	ENSG00000177200	CHD9	protein_coding	Intergenic	.	.	Alu	0.181818
16	53057534	A->G	+	ENSG00000177200	CHD9	protein_coding	Intergenic	.	.	Alu	0.272727
14	53166909	A->G	+	.	.	.	Intergenic	.	.	Alu	1
3	53253400	A->G	-	ENSG00000163931	TKT	protein_coding	Intergenic	.	.	Alu	0.4
6	53320202	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.166667
6	53320205	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.25
6	53320260	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.111111
6	53320271	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.533333
6	53320295	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.1875
6	53320309	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.2
6	53320413	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.25
6	53330636	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.257143
6	53330660	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.233333
3	53336037	A->G	-	ENSG00000272886	DCP1A	protein_coding	Intergenic	.	.	Alu	0.181818
6	53343351	A->G	-	ENSG00000012660	ELOVL5	protein_coding	Intergenic	.	.	Alu	0.111111
X	53385301	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.222222
X	53385306	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.166667
X	53385338	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.117647
X	53385403	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.230769
X	53385409	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.363636
X	53390100	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.764706
X	53390111	A->G	-	ENSG00000072501	SMC1A	protein_coding	Intergenic	.	.	Alu	0.823529
4	53420030	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.533333
4	53420034	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.2
4	53420051	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.166667
4	53420285	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.0869565
4	53420312	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	1
4	53420331	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.08
4	53420379	A->G	+	ENSG00000145216	FIP1L1	protein_coding	Intergenic	.	.	Alu	0.105263
5	53563208	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.4
5	53605836	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.153846
5	53605837	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.384615
5	53605893	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.8
5	53605899	A->G	+	ENSG00000164258	NDUFS4	protein_coding	Intergenic	.	.	Alu	0.8
12	53668094	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.142857
12	53668339	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.153846
12	53668400	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.5
12	53668401	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.4
12	53668428	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.416667
12	53668444	A->G	-	ENSG00000135390	ATP5MC2	protein_coding	Intergenic	.	.	Alu	0.25
2	53951211	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.230769
2	53951220	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.307692
2	53951250	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.153846
2	53965291	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.5
2	53965321	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.2
2	53965327	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.5
2	53965346	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.272727
2	53965433	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.3
2	53965435	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.2
2	53965488	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.3
2	53965489	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.2
2	53965497	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.2
2	53965701	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.181818
2	53965776	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.2
2	53965802	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.111111
2	53965808	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.133333
2	53965867	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.166667
2	53965875	A->G	-	ENSG00000068878	PSME4	protein_coding	Intergenic	.	.	Alu	0.235294
8	53981825	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.181818
8	53981826	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.454545
8	53981855	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.166667
8	53981877	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.0909091
8	53990435	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.142857
8	53990436	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.461538
8	53990439	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.142857
8	53990494	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.142857
8	53993085	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.214286
8	53993091	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	1
8	53993176	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.380952
8	53993200	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.428571
8	53993205	A->G	-	ENSG00000187735	TCEA1	protein_coding	Intergenic	.	.	Alu	0.15
1	54032955	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.272727
1	54032986	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.166667
1	54032988	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.714286
1	54032994	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.166667
1	54032998	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.15
1	54033039	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.230769
1	54033043	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.545455
1	54033049	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.3
1	54033052	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.4
1	54033066	A->G	-	ENSG00000116209	TMEM59	protein_coding	Intergenic	.	.	Alu	0.133333
19	54177841	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.08
19	54177864	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.0909091
19	54178007	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.125
19	54178049	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.384615
19	54178191	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.416667
19	54178196	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.583333
19	54184223	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.2
19	54184225	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.2
19	54184228	A->G	-	ENSG00000125505	MBOAT7	protein_coding	Intergenic	.	.	Alu	0.2
X	54562750	A->G	+	.	.	.	Intergenic	.	.	Alu	0.615385
X	54563675	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
X	54563679	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
X	54563711	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
X	54563731	A->G	+	.	.	.	Intergenic	.	.	Alu	0.5
2	54568307	A->G	+	ENSG00000115306	SPTBN1	protein_coding	Intergenic	.	.	Alu	0.153846
14	55059377	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.133333
14	55059430	A->G	+	ENSG00000168175	MAPK1IP1L	protein_coding	Intergenic	.	.	Alu	0.0952381
19	55128338	A->G	-	.	.	.	Intergenic	.	.	Alu	0.928571
14	55275590	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.1875
14	55275703	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0689655
14	55275770	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0444444
14	55279055	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.588235
14	55279093	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0833333
14	55279125	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.172414
14	55279128	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0740741
14	55279131	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0833333
14	55279134	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0689655
14	55279140	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.151515
14	55279148	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.08
14	55279166	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.296296
14	55279167	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.111111
14	55279183	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.304348
14	55279206	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.478261
14	55279207	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.458333
14	55279227	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.0740741
14	55285136	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.272727
14	55285223	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intergenic	.	.	Alu	0.2
15	55287123	A->G	-	ENSG00000069974	RAB27A	protein_coding	Intergenic	.	.	Alu	0.1875
15	55287147	A->G	-	ENSG00000069974	RAB27A	protein_coding	Intergenic	.	.	Alu	1
18	55330379	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.133333
18	55330383	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.125
14	55370893	A->G	-	ENSG00000126775	ATG14	protein_coding	Intergenic	.	.	Alu	0.545455
18	55376136	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.181818
18	55376146	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.3
18	55376193	A->G	-	ENSG00000196628	TCF4	protein_coding	Intergenic	.	.	Alu	0.166667
2	55377227	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.133333
2	55378857	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.181818
2	55407785	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.214286
2	55407815	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.153846
2	55407882	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.142857
2	55407997	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.294118
2	55408013	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.125
7	55408861	A->G	+	ENSG00000132434	LANCL2	protein_coding	Intergenic	.	.	Alu	0.333333
2	55409813	A->G	-	ENSG00000115355	CCDC88A	protein_coding	Intergenic	.	.	Alu	0.3
4	55412216	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.130435
4	55412217	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0869565
4	55412229	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.428571
4	55412235	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.263158
4	55412241	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.142857
4	55412242	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.142857
4	55412243	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.142857
4	55412244	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.0952381
4	55412274	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intergenic	.	.	Alu	0.416667
5	55433047	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	55433053	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.133333
5	55433054	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.5
5	55433070	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.111111
5	55433132	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.181818
5	55433137	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.4375
5	55433173	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.142857
5	55433208	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.3125
5	55433219	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.105263
5	55433220	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.45
5	55433245	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.5625
5	55433246	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.3125
5	55433286	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.09375
5	55433291	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.5
5	55433318	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.15625
5	55433749	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.545455
5	55434081	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.3
5	55434086	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.75
5	55434121	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.222222
5	55472479	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.166667
5	55472480	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.166667
5	55472507	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	55472525	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.333333
5	55491761	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.3
5	55491808	A->G	+	ENSG00000067113	PLPP1	protein_coding	Intergenic	.	.	Alu	0.181818
2	55573991	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.117647
2	55574052	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.0833333
2	55575076	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.181818
2	55575102	A->G	-	ENSG00000275052	PPP4R3B	protein_coding	Intergenic	.	.	Alu	0.230769
12	55771026	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.142857
12	55787569	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.363636
12	55787574	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.7
12	55787575	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.6
12	55787645	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.461538
12	55787668	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.266667
12	55787678	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.157895
12	55792460	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.0465116
12	55792469	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.111111
12	55792504	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.365854
12	55792509	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.475
12	55792510	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.512821
12	55799682	A->G	-	ENSG00000205323	SARNP	protein_coding	Intergenic	.	.	Alu	0.2
8	55890004	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.296296
8	55890005	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.115385
8	55890019	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.230769
8	55890021	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0666667
8	55890030	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.09375
8	55890063	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.162162
8	55890067	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.131579
8	55890075	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.166667
8	55890198	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.1
8	55890218	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.263158
8	55890232	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.5
8	55890237	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.12
8	55890275	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.105263
8	55891177	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55891191	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.142857
8	55891195	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.166667
8	55891272	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.230769
8	55891341	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.235294
8	55891342	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.214286
8	55896173	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.434783
8	55896190	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.105263
8	55896195	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.210526
8	55896211	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0952381
8	55896219	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.125
8	55896222	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0833333
8	55896257	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.146341
8	55896258	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0487805
8	55904630	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.352941
8	55904656	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.111111
8	55904691	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.416667
8	55904707	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.230769
8	55906486	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55906619	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.3
8	55906664	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.136364
8	55906687	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.172414
8	55906691	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.347826
8	55906694	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.447917
8	55906695	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.302083
8	55916991	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.2
8	55917260	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.181818
8	55917265	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.25
8	55917279	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.25
8	55917333	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.8
8	55918944	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.0967742
8	55922682	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.9
8	55922708	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.4
8	55943429	A->G	+	ENSG00000254087	LYN	protein_coding	Intergenic	.	.	Alu	0.105263
4	55960986	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0625
4	55961045	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0909091
4	55961503	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.666667
4	55961526	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.130435
4	55961575	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.4375
4	55961643	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.0833333
4	55961644	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.75
4	55975994	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.25
4	55976035	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.769231
4	55976043	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.2
4	55976066	A->G	+	ENSG00000174799	CEP135	protein_coding	Intergenic	.	.	Alu	0.3
7	55986885	A->G	+	ENSG00000146729	NIPSNAP2	protein_coding	Intergenic	.	.	Alu	0.0833333
4	56056648	A->G	+	ENSG00000109265	KIAA1211	protein_coding	Intergenic	.	.	Alu	1
8	56068991	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.6
8	56069025	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.3
8	56069030	A->G	-	ENSG00000008988	RPS20	protein_coding	Intergenic	.	.	Alu	0.4
7	56096847	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
7	56098576	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
7	56098720	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	56098721	A->G	-	.	.	.	Intergenic	.	.	Alu	0.538462
7	56098790	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	56098813	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	56098817	A->G	-	.	.	.	Intergenic	.	.	Alu	0.384615
7	56098856	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
7	56098873	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
7	56098874	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
7	56098944	A->G	-	.	.	.	Intergenic	.	.	Alu	0.142857
7	56099025	A->G	-	.	.	.	Intergenic	.	.	Alu	0.15
7	56099039	A->G	-	.	.	.	Intergenic	.	.	Alu	0.235294
12	56306514	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.2
12	56313682	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.318182
12	56313711	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.166667
12	56313731	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.4
12	56313739	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	0.458333
12	56313745	A->G	-	ENSG00000144785	AC073896.1	protein_coding	Intergenic	.	.	Alu	1
18	56607019	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.181818
18	56611761	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0625
18	56611790	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0789474
18	56611799	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.114286
18	56611818	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.470588
18	56611843	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.21875
18	56611879	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0967742
18	56611909	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.259259
18	56611916	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.166667
18	56611921	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.105263
18	56611945	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.105263
18	56611946	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.105263
18	56611973	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.208333
18	56611987	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.318182
18	56612092	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.0689655
18	56612099	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.153846
18	56612113	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.37037
18	56612117	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.125
18	56612139	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.266667
18	56612140	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.266667
18	56612146	A->G	-	ENSG00000091164	TXNL1	protein_coding	Intergenic	.	.	Alu	0.176471
12	56680350	A->G	-	ENSG00000110958	PTGES3	protein_coding	Intergenic	.	.	Alu	0.142857
12	56685888	A->G	-	ENSG00000110958	PTGES3	protein_coding	Intergenic	.	.	Alu	0.307692
12	56685915	A->G	-	ENSG00000110958	PTGES3	protein_coding	Intergenic	.	.	Alu	0.111111
12	56731436	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.823529
12	56731460	A->G	-	ENSG00000196531	NACA	protein_coding	Intergenic	.	.	Alu	0.933333
5	56854348	A->G	+	ENSG00000095015	MAP3K1	protein_coding	Intergenic	.	.	Alu	0.166667
5	56854353	A->G	+	ENSG00000095015	MAP3K1	protein_coding	Intergenic	.	.	Alu	0.166667
15	56971382	A->G	+	ENSG00000140262	TCF12	protein_coding	Intergenic	.	.	Alu	0.222222
4	57100011	A->G	-	ENSG00000163453	IGFBP7	protein_coding	Intergenic	.	.	Alu	0.333333
16	57177346	A->G	-	ENSG00000172775	FAM192A	protein_coding	Intergenic	.	.	Alu	0.166667
16	57182659	A->G	-	ENSG00000172775	FAM192A	protein_coding	Intergenic	.	.	Alu	0.2
16	57182675	A->G	-	ENSG00000172775	FAM192A	protein_coding	Intergenic	.	.	Alu	0.272727
16	57182684	A->G	-	ENSG00000172775	FAM192A	protein_coding	Intergenic	.	.	Alu	0.153846
5	57195882	A->G	+	ENSG00000062194	GPBP1	protein_coding	Intergenic	.	.	Alu	0.153846
5	57219288	A->G	+	ENSG00000062194	GPBP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	57231254	A->G	+	ENSG00000157500	APPL1	protein_coding	Intergenic	.	.	Alu	0.181818
3	57231259	A->G	+	ENSG00000157500	APPL1	protein_coding	Intergenic	.	.	Alu	0.181818
17	57304103	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.3
17	57304104	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.5
17	57304156	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57304173	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0833333
17	57304192	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	1
17	57304196	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	1
17	57304198	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0869565
17	57304199	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.521739
17	57304204	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.08
17	57304278	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.2
17	57304322	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.148148
17	57409830	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57409831	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.363636
17	57409845	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.5625
17	57409846	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.1875
17	57409851	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.210526
17	57409858	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57409861	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.157895
17	57409888	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.16129
17	57409914	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.366667
17	57409929	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.28125
17	57409936	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0606061
17	57409949	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0555556
17	57409958	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0882353
17	57409968	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.34375
12	57421241	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.363636
12	57421249	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.142857
12	57421257	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.133333
12	57421263	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.416667
12	57421353	A->G	-	ENSG00000179912	R3HDM2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57427278	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.125
17	57427304	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.333333
17	57427318	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.285714
17	57427319	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.133333
17	57427386	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0952381
17	57450443	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.307692
17	57450457	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.413793
17	57450467	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.4
17	57450476	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.357143
17	57450580	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.136364
17	57450592	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.36
17	57450610	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.190476
17	57450626	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	1
17	57460221	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57460239	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.136364
17	57468400	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.15
17	57468433	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.133333
17	57468441	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
12	57483785	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	Intergenic	.	.	Alu	0.75
12	57484098	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	Intergenic	.	.	Alu	0.0714286
12	57484103	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	Intergenic	.	.	Alu	0.222222
12	57484121	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	Intergenic	.	.	Alu	0.541667
12	57487211	A->G	+	ENSG00000123329	ARHGAP9	protein_coding	Intergenic	.	.	Alu	1
17	57495319	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57500744	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.416667
17	57500749	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.214286
17	57500788	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57504766	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.333333
17	57504769	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.4
17	57504800	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.181818
17	57504824	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57504851	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57526210	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.157895
3	57573014	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.0869565
3	57573025	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.0909091
3	57573041	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.761905
3	57579077	A->G	+	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.272727
3	57580504	A->G	-	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.461538
3	57580523	A->G	-	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.2
3	57591605	A->G	-	ENSG00000168374	ARF4	protein_coding	Intergenic	.	.	Alu	0.769231
17	57647155	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.125
17	57647167	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.36
17	57647173	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57647196	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57647227	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.285714
17	57647228	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.3125
17	57647245	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.105263
17	57647251	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.25
17	57647252	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57647318	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.666667
17	57647334	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.0625
17	57647338	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.3
17	57647361	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.09375
17	57647393	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	1
17	57647394	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	1
17	57647401	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57647414	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57647425	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57647426	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.142857
17	57647437	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.115385
17	57664334	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.153846
17	57664341	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.166667
17	57664407	A->G	+	ENSG00000153944	MSI2	protein_coding	Intergenic	.	.	Alu	0.214286
3	57677468	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.1875
3	57677551	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.214286
3	57677552	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.133333
3	57677560	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.105263
3	57677574	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.15
3	57677611	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.266667
3	57677613	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.266667
3	57677618	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.307692
3	57677631	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.125
3	57677649	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.111111
3	57677663	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.133333
3	57677682	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.529412
3	57677693	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.263158
3	57677720	A->G	-	ENSG00000174839	DENND6A	protein_coding	Intergenic	.	.	Alu	0.266667
11	57734078	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.75
11	57734093	A->G	+	ENSG00000213593	TMX2	protein_coding	Intergenic	.	.	Alu	0.5
19	57742945	A->G	+	ENSG00000269026	AC003006.1	protein_coding	Intergenic	.	.	Alu	0.647059
19	57742992	A->G	+	ENSG00000269026	AC003006.1	protein_coding	Intergenic	.	.	Alu	0.785714
19	57750364	A->G	+	ENSG00000269026	AC003006.1	protein_coding	Intergenic	.	.	Alu	0.4
19	57750422	A->G	+	ENSG00000269026	AC003006.1	protein_coding	Intergenic	.	.	Alu	0.2
3	57762115	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.363636
11	57770236	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.3
11	57770491	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.230769
11	57770493	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.25
11	57770522	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.384615
11	57770524	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.153846
11	57770532	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.166667
11	57770559	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.142857
11	57770574	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.2
11	57770585	A->G	+	ENSG00000254462	TMX2-CTNND1	protein_coding	Intergenic	.	.	Alu	0.214286
19	57774206	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.181818
19	57774207	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.272727
19	57774268	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.25
19	57774333	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.142857
19	57774337	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.142857
3	57775585	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.333333
3	57775603	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.7
3	57775635	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.4
3	57775650	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.133333
3	57777571	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.111111
2	57781761	A->G	-	.	.	.	Intergenic	.	.	Alu	1
2	57781762	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
19	57787861	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.2
19	57787957	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.333333
3	57793956	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.111111
19	57795390	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.166667
19	57798037	A->G	+	ENSG00000083828	ZNF586	protein_coding	Intergenic	.	.	Alu	0.166667
19	57810215	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.142857
19	57811759	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.2
19	57811908	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.272727
19	57811914	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.181818
19	57811918	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.2
19	57812094	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.166667
19	57812107	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.133333
19	57812121	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.416667
19	57812126	A->G	+	ENSG00000178935	ZNF552	protein_coding	Intergenic	.	.	Alu	0.2
12	57819433	A->G	+	.	.	.	Intergenic	.	.	Alu	1
12	57819434	A->G	+	.	.	.	Intergenic	.	.	Alu	1
19	57854922	A->G	+	ENSG00000268750	AC010522.1	protein_coding	Intergenic	.	.	Alu	0.181818
3	57855811	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.111111
3	57855865	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.235294
3	57855866	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.117647
3	57855885	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.125
6	57866731	A->G	-	.	.	.	Intergenic	.	.	Alu	0.833333
19	57880612	A->G	-	ENSG00000204514	ZNF814	protein_coding	Intergenic	.	.	Alu	0.181818
3	57893411	A->G	+	ENSG00000163681	SLMAP	protein_coding	Intergenic	.	.	Alu	0.636364
19	58185365	A->G	+	ENSG00000171606	ZNF274	protein_coding	Intergenic	.	.	Alu	0.142857
19	58185374	A->G	+	ENSG00000171606	ZNF274	protein_coding	Intergenic	.	.	Alu	0.923077
19	58265949	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.166667
19	58265950	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.25
19	58265980	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.181818
19	58266028	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.142857
19	58266034	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.4375
19	58266040	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.176471
19	58266043	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.125
19	58266059	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.133333
19	58266085	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.285714
19	58266086	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.357143
19	58266126	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.2
19	58266338	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.125
19	58266372	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.2
19	58271373	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.272727
19	58272747	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.363636
19	58275595	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.181818
19	58275607	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.2
19	58275618	A->G	+	ENSG00000198131	ZNF544	protein_coding	Intergenic	.	.	Alu	0.307692
14	58277012	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.153846
14	58277025	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.105263
14	58277077	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.153846
14	58277084	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.166667
14	58277172	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.0952381
14	58277178	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.153846
14	58277309	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.166667
14	58277310	A->G	-	ENSG00000139971	ARMH4	protein_coding	Intergenic	.	.	Alu	0.181818
17	58340523	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58340547	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58340842	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.230769
17	58340952	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.2
17	58340971	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.153846
17	58341681	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.75
17	58341687	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.117647
17	58341722	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.304348
17	58341727	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.26087
17	58341750	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.190476
17	58341758	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.1
17	58341760	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.1
17	58341780	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.25
17	58341782	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.0869565
17	58341783	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.347826
17	58341785	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.307692
17	58341786	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.16
17	58341789	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.181818
17	58341815	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.777778
17	58341825	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.0714286
17	58341830	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.307692
17	58341838	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.142857
17	58341856	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.214286
17	58341861	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.555556
17	58341881	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.411765
17	58341891	A->G	+	ENSG00000265148	TSPOAP1-AS1	antisense	Intergenic	.	.	Alu	0.529412
3	58342514	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.153846
3	58342528	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.142857
3	58342532	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.153846
17	58368700	A->G	+	ENSG00000108375	RNF43	protein_coding	Intergenic	.	.	Alu	0.3
3	58390080	A->G	+	ENSG00000168297	PXK	protein_coding	Intergenic	.	.	Alu	0.2
19	58565006	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.384615
19	58565041	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.1875
19	58565045	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.333333
19	58565058	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.285714
19	58565061	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.214286
19	58565081	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.125
19	58565123	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.2
19	58565158	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.2
19	58565166	A->G	-	ENSG00000099326	MZF1	protein_coding	Intergenic	.	.	Alu	0.166667
20	58683934	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	0.791667
20	58683935	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	0.958333
20	58683942	A->G	+	ENSG00000254995	STX16-NPEPL1	protein_coding	Intergenic	.	.	Alu	1
15	58921914	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.272727
15	58921957	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.2
15	58926717	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.307692
15	58926743	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.142857
15	58930181	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.117647
15	58930252	A->G	-	ENSG00000137776	SLTM	protein_coding	Intergenic	.	.	Alu	0.375
8	59086107	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.181818
8	59086114	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.166667
8	59086124	A->G	-	ENSG00000198846	TOX	protein_coding	Intergenic	.	.	Alu	0.142857
17	59204726	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.185185
17	59204907	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.142857
17	59204943	A->G	+	ENSG00000265303	AC099850.2	protein_coding	Intergenic	.	.	Alu	0.153846
17	59274622	A->G	+	ENSG00000153982	GDPD1	protein_coding	Intergenic	.	.	Alu	0.947368
17	59274657	A->G	+	ENSG00000153982	GDPD1	protein_coding	Intergenic	.	.	Alu	0.952381
17	59274663	A->G	+	ENSG00000153982	GDPD1	protein_coding	Intergenic	.	.	Alu	0.857143
11	59583729	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.357143
11	59583740	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.454545
11	59583741	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.2
11	59583779	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.47619
11	59583784	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.285714
11	59583800	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.153846
11	59583810	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.181818
11	59583813	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.166667
11	59583834	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.153846
11	59583835	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.153846
11	59583843	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.333333
11	59583867	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.227273
11	59591732	A->G	-	ENSG00000110048	OSBP	protein_coding	Intergenic	.	.	Alu	0.153846
15	59676312	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.266667
15	59676320	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.230769
15	59676322	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.307692
15	59676338	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.2
15	59676388	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.166667
15	59676452	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.2
15	59676456	A->G	-	ENSG00000140299	BNIP2	protein_coding	Intergenic	.	.	Alu	0.2
15	59690761	A->G	+	.	.	.	Intergenic	.	.	Alu	0.12
17	59739577	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.166667
17	59739814	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.153846
17	59744296	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.166667
17	59744319	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.105263
17	59744387	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.142857
17	59744407	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.111111
17	59744534	A->G	+	ENSG00000062716	VMP1	protein_coding	Intergenic	.	.	Alu	0.111111
17	59901103	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.153846
17	59901118	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.25
17	59901401	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.5
17	59901423	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.214286
17	59901534	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.166667
17	59901535	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.166667
17	59901782	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.6
17	59901835	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.2
17	59901915	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.307692
17	59901994	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.277778
17	59901997	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.625
17	59902000	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.5
17	59903287	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.692308
17	59903354	A->G	+	ENSG00000108443	RPS6KB1	protein_coding	Intergenic	.	.	Alu	0.5
14	60256327	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.272727
14	60272478	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.1
14	60272588	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.0645161
14	60272589	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.133333
14	60272654	A->G	+	ENSG00000100614	PPM1A	protein_coding	Intergenic	.	.	Alu	0.0714286
3	60472507	A->G	-	ENSG00000189283	FHIT	protein_coding	Intergenic	.	.	Alu	0.705882
3	60472541	A->G	-	ENSG00000189283	FHIT	protein_coding	Intergenic	.	.	Alu	0.769231
8	60518395	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0769231
8	60518446	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.09375
8	60518470	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0689655
8	60518535	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.105263
8	60518536	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.0512821
8	60518571	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.05
8	60586639	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.818182
8	60586646	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.75
8	60586670	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.692308
8	60586854	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.142857
8	60603830	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.4
8	60603839	A->G	+	ENSG00000104388	RAB2A	protein_coding	Intergenic	.	.	Alu	0.2
5	60961474	A->G	+	ENSG00000164182	NDUFAF2	protein_coding	Intergenic	.	.	Alu	0.666667
2	61196157	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.272727
2	61196177	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.25
2	61196186	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
2	61269218	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.153846
2	61269258	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.272727
2	61269293	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.125
2	61269301	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.307692
2	61269369	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.2
11	61320338	A->G	-	ENSG00000167986	DDB1	protein_coding	Intergenic	.	.	Alu	0.1
14	61352517	A->G	+	ENSG00000027075	PRKCH	protein_coding	Intergenic	.	.	Alu	0.1
2	61353488	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.166667
11	61355561	A->G	+	ENSG00000162144	CYB561A3	protein_coding	Intergenic	.	.	Alu	1
2	61359891	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.0909091
2	61359896	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.227273
2	61359913	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.0833333
2	61359964	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.2
2	61360038	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
14	61360384	A->G	+	ENSG00000027075	PRKCH	protein_coding	Intergenic	.	.	Alu	0.181818
14	61360456	A->G	+	ENSG00000027075	PRKCH	protein_coding	Intergenic	.	.	Alu	0.130435
5	61379106	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.833333
5	61379113	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.461538
5	61379122	A->G	+	ENSG00000130449	ZSWIM6	protein_coding	Intergenic	.	.	Alu	0.5
2	61401660	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.2
14	61409574	A->G	+	ENSG00000027075	PRKCH	protein_coding	Intergenic	.	.	Alu	0.181818
2	61454687	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.285714
2	61454688	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.142857
2	61454752	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.181818
2	61454824	A->G	-	ENSG00000115464	USP34	protein_coding	Intergenic	.	.	Alu	0.25
2	61502857	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.3
2	61502863	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.166667
2	61502879	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.210526
2	61503051	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.214286
2	61503068	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.210526
2	61503151	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.2
2	61511788	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.0740741
2	61511821	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.230769
2	61527957	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.142857
2	61528023	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.3
2	61528024	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.333333
2	61528038	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.214286
2	61528065	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.333333
2	61528109	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.428571
2	61528120	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.133333
2	61528126	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.266667
2	61528162	A->G	-	ENSG00000082898	XPO1	protein_coding	Intergenic	.	.	Alu	0.266667
1	61697471	A->G	-	ENSG00000162604	TM2D1	protein_coding	Intergenic	.	.	Alu	0.153846
14	61742677	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.166667
14	61742700	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.125
14	61742737	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.111111
14	61742753	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.125
14	61742763	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.133333
14	61742773	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.3
14	61742805	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.181818
14	61742806	A->G	+	ENSG00000100644	HIF1A	protein_coding	Intergenic	.	.	Alu	0.25
15	61861221	A->G	-	ENSG00000129003	VPS13C	protein_coding	Intergenic	.	.	Alu	0.285714
15	61861228	A->G	-	ENSG00000129003	VPS13C	protein_coding	Intergenic	.	.	Alu	0.307692
15	61861236	A->G	-	ENSG00000129003	VPS13C	protein_coding	Intergenic	.	.	Alu	0.363636
2	61882637	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.2
2	61882783	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.727273
2	61882784	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.363636
2	61886831	A->G	-	ENSG00000115484	CCT4	protein_coding	Intergenic	.	.	Alu	0.176471
17	61998660	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.148148
17	61998667	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.157895
17	61998696	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.1
17	61998697	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	1
17	61998721	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.0952381
17	61998724	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.363636
17	61998738	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.206897
17	61998746	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.08
17	61998815	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.2
17	61998817	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.3
17	61998878	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.2
17	61998880	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.533333
17	61998885	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.666667
17	62039461	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.133333
17	62039465	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.230769
17	62039556	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.1
17	62039557	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.157895
17	62039619	A->G	-	ENSG00000108510	MED13	protein_coding	Intergenic	.	.	Alu	0.08
12	62074784	A->G	-	ENSG00000198673	FAM19A2	protein_coding	Intergenic	.	.	Alu	0.15
12	62074790	A->G	-	ENSG00000198673	FAM19A2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	62074830	A->G	-	ENSG00000198673	FAM19A2	protein_coding	Intergenic	.	.	Alu	0.5
5	62323105	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.111111
5	62323113	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.166667
5	62323244	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.153846
5	62330167	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.142857
5	62330173	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.3
5	62330220	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.214286
5	62330276	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.125
5	62330285	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.133333
5	62330301	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.105263
12	62330657	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0869565
12	62330687	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0689655
12	62330692	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.103448
12	62330783	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.142857
12	62330823	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.16129
12	62330836	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0909091
12	62330851	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.21875
12	62330859	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.09375
12	62330868	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0714286
5	62331467	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.153846
5	62331468	A->G	+	ENSG00000068796	KIF2A	protein_coding	Intergenic	.	.	Alu	0.153846
12	62332018	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.259259
12	62332043	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.28
12	62332053	A->G	+	ENSG00000135655	USP15	protein_coding	Intergenic	.	.	Alu	0.0869565
12	62513759	A->G	+	ENSG00000061987	MON2	protein_coding	Intergenic	.	.	Alu	0.7
17	62518457	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.375
17	62518490	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.08
17	62518528	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.3
17	62518563	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.25
17	62518585	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.526316
17	62518586	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.1
17	62518627	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.307692
17	62518661	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.2
17	62549206	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.142857
17	62549247	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.133333
17	62549284	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.153846
17	62549305	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.08
17	62549331	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.12
17	62591128	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.111111
17	62591129	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.111111
17	62591145	A->G	+	ENSG00000146872	TLK2	protein_coding	Intergenic	.	.	Alu	0.307692
11	62619629	A->G	-	ENSG00000149541	B3GAT3	protein_coding	Intergenic	.	.	Alu	0.75
11	62619639	A->G	-	ENSG00000149541	B3GAT3	protein_coding	Intergenic	.	.	Alu	0.666667
11	62619760	A->G	-	ENSG00000149541	B3GAT3	protein_coding	Intergenic	.	.	Alu	0.181818
11	62820550	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.111111
11	62820552	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.166667
11	62820554	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.125
11	62820555	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.166667
11	62820605	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.117647
11	62820673	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
11	62820776	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.3
11	62820782	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.2
11	62823197	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.277778
11	62823208	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.125
11	62823210	A->G	-	ENSG00000162236	STX5	protein_coding	Intergenic	.	.	Alu	0.105263
11	62887846	A->G	+	ENSG00000168003	SLC3A2	protein_coding	Intergenic	.	.	Alu	0.818182
11	62887867	A->G	+	ENSG00000168003	SLC3A2	protein_coding	Intergenic	.	.	Alu	0.45
18	62891772	A->G	+	ENSG00000081913	PHLPP1	protein_coding	Intergenic	.	.	Alu	0.3
8	63196306	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.3
8	63196307	A->G	+	ENSG00000185728	YTHDF3	protein_coding	Intergenic	.	.	Alu	0.2
15	63229661	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.181818
15	63229674	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.214286
15	63229702	A->G	+	ENSG00000166128	RAB8B	protein_coding	Intergenic	.	.	Alu	0.133333
10	63254970	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.153846
10	63255029	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.125
10	63446014	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.153846
10	63472395	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.2
10	63490484	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.222222
10	63493359	A->G	-	ENSG00000171988	JMJD1C	protein_coding	Intergenic	.	.	Alu	0.3
20	63526835	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
20	63526847	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
20	63526945	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
20	63526955	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
20	63526990	A->G	+	.	.	.	Intergenic	.	.	Alu	0.142857
15	63545692	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.153846
15	63545701	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.75
15	63545708	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.125
15	63545714	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.625
15	63545715	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.375
15	63545736	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.111111
15	63545762	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.206897
15	63545764	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0740741
15	63545770	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0689655
15	63545781	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0645161
15	63545785	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.310345
15	63545793	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.230769
15	63545795	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.111111
15	63545796	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0769231
15	63545824	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.12
15	63545850	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.458333
15	63545860	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.111111
15	63545873	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63545891	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.3125
15	63545896	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.529412
15	63545910	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.684211
15	63545953	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.142857
15	63547458	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.2
15	63547580	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	1
15	63547636	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.142857
15	63547650	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0833333
15	63547655	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.483871
15	63547663	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.15
15	63547923	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.55
15	63547963	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.137931
15	63547979	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0645161
15	63547990	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.0606061
15	63547997	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.142857
15	63548000	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.5
15	63548026	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.4
15	63548031	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	1
15	63548035	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.153846
15	63578473	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.181818
15	63578491	A->G	+	ENSG00000140455	USP3	protein_coding	Intergenic	.	.	Alu	0.142857
12	63588850	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.266667
12	63588851	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.2
12	63588859	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.153846
12	63588882	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.333333
12	63588886	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.125
12	63588892	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.25
12	63588918	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.363636
12	63588925	A->G	-	ENSG00000177990	DPY19L2	protein_coding	Intergenic	.	.	Alu	0.181818
17	63670462	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.25
17	63670504	A->G	+	ENSG00000198909	MAP3K3	protein_coding	Intergenic	.	.	Alu	0.166667
15	63675937	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.2
15	63675996	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.333333
15	63720196	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.166667
15	63720201	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.166667
15	63720255	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.230769
15	63739319	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.272727
15	63739392	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.384615
15	63739393	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.538462
15	63739429	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.2
17	63770015	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.636364
17	63770023	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.181818
17	63770053	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.2
17	63770085	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.4
17	63770089	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.181818
17	63770100	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.833333
17	63770120	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.4
17	63772392	A->G	-	ENSG00000108588	CCDC47	protein_coding	Intergenic	.	.	Alu	0.3
15	63787024	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.4
15	63787079	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.2
15	63789362	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.272727
15	63789363	A->G	-	ENSG00000103657	HERC1	protein_coding	Intergenic	.	.	Alu	0.8
17	63840417	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.125
17	63840420	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.352941
17	63840453	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.916667
17	63840455	A->G	-	ENSG00000108604	SMARCD2	protein_coding	Intergenic	.	.	Alu	0.166667
20	63881317	A->G	+	ENSG00000101150	TPD52L2	protein_coding	Intergenic	.	.	Alu	0.166667
20	63900521	A->G	+	ENSG00000101152	DNAJC5	protein_coding	Intergenic	.	.	Alu	0.181818
20	63900522	A->G	+	ENSG00000101152	DNAJC5	protein_coding	Intergenic	.	.	Alu	0.181818
15	64098611	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.3
15	64108894	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.333333
15	64108900	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.272727
15	64108914	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64109116	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.25
15	64109121	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.384615
15	64109187	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.642857
15	64109193	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64109195	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.5
15	64109206	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.285714
15	64109209	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.333333
15	64109252	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.909091
15	64109275	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.3
15	64109292	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	0.3
15	64135138	A->G	+	ENSG00000028528	SNX1	protein_coding	Intergenic	.	.	Alu	1
11	64187884	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.2
11	64187890	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.181818
11	64187894	A->G	+	ENSG00000168439	STIP1	protein_coding	Intergenic	.	.	Alu	0.4
11	64309352	A->G	+	ENSG00000173153	ESRRA	protein_coding	Intergenic	.	.	Alu	1
7	64345513	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.333333
7	64345514	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.181818
7	64345519	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.4
7	64345567	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.8
7	64345568	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.818182
7	64345575	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.272727
7	64345578	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.181818
7	64345655	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.214286
7	64345659	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	1
7	64345684	A->G	+	ENSG00000234444	ZNF736	protein_coding	Intergenic	.	.	Alu	0.666667
12	64460766	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.117647
12	64463257	A->G	+	ENSG00000183735	TBK1	protein_coding	Intergenic	.	.	Alu	0.2
15	64463356	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.0689655
15	64465996	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.2
15	64468993	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.133333
15	64469113	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.142857
15	64469116	A->G	+	ENSG00000180357	ZNF609	protein_coding	Intergenic	.	.	Alu	0.533333
17	64483420	A->G	-	ENSG00000256525	POLG2	protein_coding	Intergenic	.	.	Alu	0.153846
17	64489055	A->G	-	ENSG00000256525	POLG2	protein_coding	Intergenic	.	.	Alu	0.2
17	64576943	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.153846
17	64576948	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.2
17	64576963	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.4375
12	64629843	A->G	+	ENSG00000225195	AC078962.1	sense_intronic	Intergenic	.	.	Alu	0.2
12	64629844	A->G	+	ENSG00000225195	AC078962.1	sense_intronic	Intergenic	.	.	Alu	0.7
17	64638098	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.153846
17	64638101	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.153846
17	64646143	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.166667
17	64646162	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.181818
17	64646163	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.272727
17	64646338	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.176471
17	64646341	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.176471
17	64646522	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.2
17	64646547	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.2
17	64646552	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.2
17	64650287	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.428571
17	64650296	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	1
17	64650309	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.5
17	64655366	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.318182
17	64655367	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.136364
17	64655395	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.2
17	64655396	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.388889
17	64655402	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.5
17	64655531	A->G	-	ENSG00000108854	SMURF2	protein_coding	Intergenic	.	.	Alu	0.181818
7	64699988	A->G	+	ENSG00000196247	ZNF107	protein_coding	Intergenic	.	.	Alu	0.3
7	64699995	A->G	+	ENSG00000196247	ZNF107	protein_coding	Intergenic	.	.	Alu	0.2
5	64756699	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.214286
5	64757966	A->G	-	ENSG00000153006	SREK1IP1	protein_coding	Intergenic	.	.	Alu	0.153846
15	64872718	A->G	+	ENSG00000249240	AC069368.1	protein_coding	Intergenic	.	.	Alu	0.2
1	64951913	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.272727
1	64953784	A->G	-	ENSG00000162434	JAK1	protein_coding	Intergenic	.	.	Alu	0.0857143
15	64955218	A->G	-	ENSG00000166839	ANKDD1A	protein_coding	Intergenic	.	.	Alu	0.153846
15	64955223	A->G	-	ENSG00000166839	ANKDD1A	protein_coding	Intergenic	.	.	Alu	0.142857
15	64955274	A->G	-	ENSG00000166839	ANKDD1A	protein_coding	Intergenic	.	.	Alu	0.111111
15	65014462	A->G	-	ENSG00000103707	MTFMT	protein_coding	Intergenic	.	.	Alu	0.7
15	65014488	A->G	-	ENSG00000103707	MTFMT	protein_coding	Intergenic	.	.	Alu	0.7
15	65014492	A->G	-	ENSG00000103707	MTFMT	protein_coding	Intergenic	.	.	Alu	0.7
14	65015376	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.2
14	65037375	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.133333
14	65037378	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.2
14	65059930	A->G	-	ENSG00000125954	CHURC1-FNTB	protein_coding	Intergenic	.	.	Alu	0.166667
14	65067715	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.214286
14	65067746	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.157895
14	65067865	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.3
14	65067866	A->G	-	ENSG00000125952	MAX	protein_coding	Intergenic	.	.	Alu	0.2
2	65093828	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.25
2	65095410	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.272727
11	65101646	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.2
11	65101684	A->G	+	ENSG00000149823	VPS51	protein_coding	Intergenic	.	.	Alu	0.133333
2	65101914	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.166667
2	65101981	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.25
2	65102019	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.153846
2	65125934	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.25
2	65127475	A->G	-	ENSG00000138069	RAB1A	protein_coding	Intergenic	.	.	Alu	0.363636
15	65176656	A->G	-	ENSG00000166855	CLPX	protein_coding	Intergenic	.	.	Alu	0.25
15	65176658	A->G	-	ENSG00000166855	CLPX	protein_coding	Intergenic	.	.	Alu	0.2
2	65229677	A->G	+	ENSG00000138071	ACTR2	protein_coding	Intergenic	.	.	Alu	0.35
12	65286817	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.272727
12	65286826	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.3
12	65286874	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.5
12	65371273	A->G	+	ENSG00000174099	MSRB3	protein_coding	Intergenic	.	.	Alu	0.105263
2	65392272	A->G	-	ENSG00000198369	SPRED2	protein_coding	Intergenic	.	.	Alu	0.2
2	65427210	A->G	-	ENSG00000198369	SPRED2	protein_coding	Intergenic	.	.	Alu	0.181818
2	65427223	A->G	-	ENSG00000198369	SPRED2	protein_coding	Intergenic	.	.	Alu	0.272727
15	65572872	A->G	+	ENSG00000074696	HACD3	protein_coding	Intergenic	.	.	Alu	0.2
15	65698902	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	1
15	65698932	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.25
15	65708099	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.166667
15	65708112	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.181818
15	65708120	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.133333
15	65708125	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.5
15	65708135	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.75
15	65728522	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.117647
15	65728551	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.666667
8	65730235	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.642857
8	65730348	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	65730349	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.2
8	65730350	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.7
15	65736326	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.166667
15	65736356	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.25
15	65736397	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.125
15	65736398	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.117647
8	65736669	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.333333
8	65736682	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.166667
8	65736700	A->G	-	ENSG00000066855	MTFR1	protein_coding	Intergenic	.	.	Alu	0.111111
15	65746449	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.166667
15	65746472	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.3
15	65746551	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.2
15	65746613	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.0645161
15	65746618	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.12
15	65746632	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.129032
15	65746642	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.0571429
15	65746659	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.0869565
15	65753972	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.142857
15	65753989	A->G	-	ENSG00000174485	DENND4A	protein_coding	Intergenic	.	.	Alu	0.125
11	65974175	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.166667
11	65974572	A->G	+	ENSG00000175467	SART1	protein_coding	Intergenic	.	.	Alu	0.2
7	65977409	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.1
7	65981118	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.285714
7	65981128	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.0645161
7	65981143	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.233333
7	65981155	A->G	-	ENSG00000169919	GUSB	protein_coding	Intergenic	.	.	Alu	0.222222
5	65998883	A->G	+	ENSG00000112851	ERBIN	protein_coding	Intergenic	.	.	Alu	0.133333
5	66149187	A->G	+	ENSG00000153914	SREK1	protein_coding	Intergenic	.	.	Alu	0.2
5	66149262	A->G	+	ENSG00000153914	SREK1	protein_coding	Intergenic	.	.	Alu	0.307692
12	66194618	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.285714
12	66194627	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	66194741	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.2
12	66194750	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.583333
12	66194762	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.545455
12	66194784	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.388889
12	66202503	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	66202516	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.0952381
12	66202517	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.217391
12	66202579	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.142857
12	66202599	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.111111
12	66202684	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.117647
12	66202707	A->G	+	ENSG00000090376	IRAK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	66522006	A->G	+	ENSG00000256349	AP002748.4	protein_coding	Intergenic	.	.	Alu	0.25
11	66522009	A->G	+	ENSG00000256349	AP002748.4	protein_coding	Intergenic	.	.	Alu	0.181818
11	66629807	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.214286
11	66629984	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0740741
11	66629988	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.115385
11	66630020	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.142857
11	66634987	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.142857
11	66634991	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.133333
11	66635027	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.619048
11	66635087	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.47619
11	66635088	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0909091
11	66635105	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.853659
11	66635117	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.447368
11	66635127	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0540541
11	66635133	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0645161
11	66635167	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.3
11	66635248	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.411765
11	66635249	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.666667
11	66635261	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	1
11	66635263	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.115385
11	66635353	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.548387
11	66635360	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.897436
11	66635370	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0434783
11	66635375	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0444444
11	66635397	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0666667
11	66635414	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.109091
11	66635423	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.176471
11	66635424	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	1
11	66635425	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.612245
11	66635436	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.5
11	66635439	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0588235
11	66635442	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.037037
11	66635454	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.243902
11	66635458	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0512821
11	66635467	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.348837
11	66635480	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0784314
11	66635481	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0769231
11	66635490	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0344828
11	66635494	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.26
11	66635503	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.031746
11	66635507	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.047619
11	66635521	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0322581
11	66635569	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.09375
11	66635635	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0714286
11	66635643	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.176471
11	66635644	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.194444
11	66635650	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.410256
11	66635659	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0714286
11	66635692	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0857143
11	66635712	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0526316
11	66635720	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.15625
11	66635772	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0869565
11	66635774	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.0769231
11	66635780	A->G	+	ENSG00000248643	RBM14-RBM4	protein_coding	Intergenic	.	.	Alu	0.142857
11	66657472	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.166667
11	66657536	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.105263
11	66657556	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.117647
11	66657562	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.611111
11	66657568	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.111111
11	66657598	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.642857
11	66657603	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.75
11	66657761	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.352941
11	66657777	A->G	+	ENSG00000173933	RBM4	protein_coding	Intergenic	.	.	Alu	0.263158
11	66671946	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.4
11	66672220	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.2
11	66672221	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.357143
11	66672229	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.4
11	66672281	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.5
11	66672289	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.416667
11	66672295	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.4
11	66672307	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.416667
11	66672325	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	1
11	66672331	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	1
11	66672385	A->G	+	ENSG00000173914	RBM4B	protein_coding	Intergenic	.	.	Alu	0.125
16	66673047	A->G	-	ENSG00000183723	CMTM4	protein_coding	Intergenic	.	.	Alu	1
8	66717085	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.181818
8	66717130	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.5
8	66717272	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.333333
8	66717274	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.166667
8	66717329	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.181818
8	66717409	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.166667
7	66741948	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.375
7	66742030	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.0625
7	66742036	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.5
7	66742040	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.375
7	66742057	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.12
7	66743143	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.153846
7	66743146	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.615385
7	66743147	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.153846
7	66743148	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.307692
7	66743149	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.25
7	66743196	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.4
7	66743200	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.692308
7	66743203	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.153846
7	66743213	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.1875
7	66743376	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.0952381
7	66743394	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.133333
7	66743454	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.153846
8	66750743	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.133333
8	66750750	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.133333
8	66750772	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.230769
8	66750776	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.272727
8	66751187	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.5
8	66751191	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.9
8	66751195	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.9
7	66762484	A->G	+	ENSG00000284461	AC027644.4	protein_coding	Intergenic	.	.	Alu	0.2
8	66843735	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.272727
8	66843739	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.181818
8	66843747	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.363636
8	66843808	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.2
8	66843817	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.2
8	66843823	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.272727
8	66843832	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.181818
8	66843833	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.181818
8	66843861	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.363636
8	66843873	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.153846
8	66843951	A->G	+	ENSG00000104205	SGK3	protein_coding	Intergenic	.	.	Alu	0.153846
1	66936737	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.103448
1	66936739	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.111111
1	66936745	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.230769
1	66936746	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.72
1	66936751	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.392857
1	66936784	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.178571
1	66936789	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.46875
1	66936792	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.25
1	66936813	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.456522
1	66936824	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.7
1	66936872	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	1
1	66936878	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	1
1	66936919	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.133333
1	66936920	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0967742
1	66936927	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.117647
1	66936940	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0526316
1	66936944	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.25
1	66936949	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.105263
1	66937331	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.1875
1	66937353	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.263158
1	66937372	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.166667
1	66937377	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0833333
1	66937487	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.08
1	66937501	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.0689655
1	66937505	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.266667
1	66937530	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.128205
1	66937535	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.666667
1	66975420	A->G	+	ENSG00000198160	MIER1	protein_coding	Intergenic	.	.	Alu	0.157895
14	67010472	A->G	+	ENSG00000171723	GPHN	protein_coding	Intergenic	.	.	Alu	0.2
11	67125610	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.181818
11	67125658	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.3
11	67125685	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.142857
11	67125723	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.230769
11	67125837	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.333333
11	67125859	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.133333
11	67125865	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.125
11	67125884	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.1875
11	67125893	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.117647
11	67125990	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.214286
11	67126026	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.210526
11	67126082	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.235294
11	67126105	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.117647
11	67126201	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.3
8	67136352	A->G	+	ENSG00000104218	CSPP1	protein_coding	Intergenic	.	.	Alu	0.166667
8	67136359	A->G	+	ENSG00000104218	CSPP1	protein_coding	Intergenic	.	.	Alu	0.25
8	67136510	A->G	+	ENSG00000104218	CSPP1	protein_coding	Intergenic	.	.	Alu	0.2
11	67155746	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.3
11	67155756	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.181818
11	67155985	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.285714
11	67156128	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.166667
11	67156137	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.166667
11	67188207	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.230769
11	67188361	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.363636
11	67188688	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.105263
17	67195888	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.0869565
17	67195889	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.0740741
17	67195948	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.217391
17	67195963	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.142857
17	67195980	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.296296
17	67195989	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.173913
17	67195990	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.227273
17	67196045	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.142857
17	67196111	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.478261
17	67196125	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.105263
17	67196127	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.222222
17	67200493	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.928571
17	67200494	A->G	-	ENSG00000198265	HELZ	protein_coding	Intergenic	.	.	Alu	0.928571
11	67201689	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.0952381
11	67228606	A->G	+	ENSG00000173120	KDM2A	protein_coding	Intergenic	.	.	Alu	0.272727
7	67273654	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
14	67315401	A->G	-	ENSG00000072415	MPP5	protein_coding	Intergenic	.	.	Alu	0.272727
14	67315415	A->G	-	ENSG00000072415	MPP5	protein_coding	Intergenic	.	.	Alu	0.384615
14	67315441	A->G	-	ENSG00000072415	MPP5	protein_coding	Intergenic	.	.	Alu	0.3
8	67335182	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.181818
8	67335203	A->G	-	ENSG00000066777	ARFGEF1	protein_coding	Intergenic	.	.	Alu	0.2
17	67353389	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.153846
17	67353404	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.307692
17	67353405	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.266667
17	67353432	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.8
17	67353436	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.307692
17	67354862	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.166667
17	67354927	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.181818
17	67354943	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.454545
17	67354946	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.363636
17	67355178	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.304348
17	67355229	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.208333
17	67355230	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.333333
17	67355240	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.111111
17	67355246	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.578947
17	67355269	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.15
17	67355271	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.15
17	67355305	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intergenic	.	.	Alu	0.142857
16	67565598	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.166667
16	67565601	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.166667
16	67566242	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.181818
16	67566317	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.363636
16	67566318	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.272727
16	67566348	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.4
16	67566351	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.25
16	67566357	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.25
16	67566403	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.263158
16	67566422	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0952381
16	67566425	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.0869565
16	67566459	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.4
16	67566670	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.157895
16	67566681	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.16
16	67566721	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.111111
16	67566755	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.25
16	67566761	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.636364
16	67566833	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.368421
16	67566845	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.25
16	67566894	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.307692
16	67566895	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.153846
16	67566899	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.142857
16	67576040	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.08
16	67590850	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.5
16	67591102	A->G	+	ENSG00000102974	CTCF	protein_coding	Intergenic	.	.	Alu	0.111111
3	67597706	A->G	+	ENSG00000172340	SUCLG2	protein_coding	Intergenic	.	.	Alu	1
16	67793991	A->G	-	ENSG00000141084	RANBP10	protein_coding	Intergenic	.	.	Alu	0.2
16	67794018	A->G	-	ENSG00000141084	RANBP10	protein_coding	Intergenic	.	.	Alu	0.272727
17	67876620	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.3
17	67883058	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.130435
17	67883060	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.0869565
17	67883061	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.0833333
17	67883083	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.0909091
17	67883126	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.294118
17	67883131	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.461538
10	67890792	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.25
10	67890845	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.5
10	67890883	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.5
10	67890909	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.526316
10	67890919	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.411765
10	67890932	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.181818
10	67890950	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.272727
10	67890969	A->G	+	ENSG00000096717	SIRT1	protein_coding	Intergenic	.	.	Alu	0.461538
17	67897121	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.416667
17	67898120	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.2
17	67898276	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.105263
17	67942222	A->G	+	ENSG00000171634	BPTF	protein_coding	Intergenic	.	.	Alu	0.0740741
16	68152268	A->G	+	ENSG00000072736	NFATC3	protein_coding	Intergenic	.	.	Alu	0.2
2	68202497	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0487805
2	68202527	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0833333
2	68202562	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0338983
2	68202563	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0689655
2	68202868	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0869565
2	68202941	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.1
2	68202967	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
11	68204676	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.142857
11	68204694	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.117647
11	68204712	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.5
11	68204713	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.142857
11	68204749	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.333333
11	68204754	A->G	-	ENSG00000110066	KMT5B	protein_coding	Intergenic	.	.	Alu	0.636364
2	68205271	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.1
2	68205348	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
2	68205380	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.25
2	68205381	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.142857
2	68205407	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.333333
2	68205411	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
2	68205445	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.16
2	68205451	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.133333
2	68205462	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.09375
2	68205508	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.133333
16	68233095	A->G	+	ENSG00000103067	ESRP2	protein_coding	Intergenic	.	.	Alu	0.166667
2	68245114	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.454545
2	68246122	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0555556
2	68246142	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.3
2	68246151	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.137931
2	68246171	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0909091
2	68246180	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.111111
2	68246183	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
2	68246186	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.1
2	68246199	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.1875
2	68246212	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.181818
2	68246213	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0909091
2	68246239	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.342857
2	68246242	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0571429
2	68246243	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0571429
2	68246291	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.0952381
2	68246295	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.714286
2	68246345	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.777778
2	68246346	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.666667
2	68246354	A->G	-	ENSG00000221823	PPP3R1	protein_coding	Intergenic	.	.	Alu	0.105263
10	68460266	A->G	-	ENSG00000138346	DNA2	protein_coding	Intergenic	.	.	Alu	0.384615
10	68460271	A->G	-	ENSG00000138346	DNA2	protein_coding	Intergenic	.	.	Alu	0.166667
11	68463193	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.111111
11	68463249	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	68463254	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0526316
11	68463288	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.05
11	68471027	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.111111
11	68471163	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	68482161	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0588235
11	68482346	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.222222
11	68482364	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.105263
11	68486342	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.166667
11	68486344	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.388889
11	68486350	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.411765
11	68486351	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.235294
11	68486356	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.117647
11	68486458	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.125
11	68486591	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.235294
11	68493847	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.153846
11	68493982	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0638298
11	68493988	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.528302
11	68494044	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.0465116
11	68494348	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.176471
11	68533584	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.133333
11	68533620	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.210526
11	68533646	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.142857
11	68533654	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.333333
11	68533675	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.166667
11	68533692	A->G	+	ENSG00000110075	PPP6R3	protein_coding	Intergenic	.	.	Alu	0.2
16	68578678	A->G	+	ENSG00000260084	AC126773.1	antisense	Intergenic	.	.	Alu	0.866667
12	68613150	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.117647
12	68613213	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.117647
12	68613240	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.16
12	68613348	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0625
12	68623874	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.166667
12	68637365	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.130435
12	68637396	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0714286
12	68637401	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.125
12	68637414	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.05
12	68637421	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0512821
12	68637422	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.05
12	68637433	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.2
12	68637436	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.162162
12	68637437	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.305556
12	68637438	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.176471
12	68637439	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0882353
12	68637442	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0645161
12	68637450	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0857143
12	68637454	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.277778
12	68637466	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.294118
12	68637476	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.166667
12	68637477	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.295455
12	68637482	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0681818
12	68637509	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0512821
12	68637512	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.170732
12	68637517	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.447368
12	68637518	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.361111
12	68637556	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.0571429
12	68637587	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.321429
12	68637588	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.214286
12	68637589	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.142857
12	68637590	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.148148
12	68637595	A->G	+	ENSG00000127314	RAP1B	protein_coding	Intergenic	.	.	Alu	0.115385
10	68760652	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.181818
10	68760666	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.333333
10	68760671	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.125
10	68760677	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.133333
10	68760680	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.125
10	68760711	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.166667
10	68760717	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.272727
10	68760743	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.5
10	68760744	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.6
10	68769826	A->G	+	ENSG00000060339	CCAR1	protein_coding	Intergenic	.	.	Alu	0.133333
10	68920846	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.4
10	68920847	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.454545
10	68920851	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.181818
10	68920911	A->G	+	ENSG00000107625	DDX50	protein_coding	Intergenic	.	.	Alu	0.142857
9	69100756	A->G	+	ENSG00000165060	FXN	protein_coding	Intergenic	.	.	Alu	0.363636
10	69134891	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.3
10	69151144	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.307692
10	69151331	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.157895
10	69151332	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.105263
10	69151409	A->G	+	ENSG00000122958	VPS26A	protein_coding	Intergenic	.	.	Alu	0.133333
16	69165074	A->G	+	ENSG00000141076	UTP4	protein_coding	Intergenic	.	.	Alu	1
3	69215390	A->G	-	ENSG00000114541	FRMD4B	protein_coding	Intergenic	.	.	Alu	0.666667
12	69244997	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.111111
12	69249083	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.105263
12	69250544	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.125
12	69250666	A->G	+	ENSG00000111605	CPSF6	protein_coding	Intergenic	.	.	Alu	0.0967742
16	69323920	A->G	+	ENSG00000132612	VPS4A	protein_coding	Intergenic	.	.	Alu	0.2
16	69381553	A->G	-	ENSG00000132604	TERF2	protein_coding	Intergenic	.	.	Alu	0.0909091
16	69381699	A->G	-	ENSG00000132604	TERF2	protein_coding	Intergenic	.	.	Alu	0.2
12	69540173	A->G	+	ENSG00000166225	FRS2	protein_coding	Intergenic	.	.	Alu	0.25
16	69571106	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.105263
16	69596713	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.153846
16	69598281	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.3
16	69598319	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.368421
16	69598335	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.235294
16	69609719	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.0909091
16	69609948	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.08
7	69625783	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	1
7	69625802	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.666667
7	69625803	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.190476
16	69634131	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.142857
16	69634158	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.111111
16	69661468	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.25
16	69663617	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.166667
16	69684311	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.2
16	69687255	A->G	+	ENSG00000102908	NFAT5	protein_coding	Intergenic	.	.	Alu	0.166667
16	69807539	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.230769
16	69807544	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.363636
16	69807606	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.2
16	69807607	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.2
16	69807684	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.2
16	69807698	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.105263
16	69807767	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.117647
16	69807771	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.352941
16	69809647	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.181818
16	69809648	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.5
16	69809683	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.153846
16	69809700	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.210526
16	69815532	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.5
16	69815533	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.75
16	69826818	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.166667
16	69826824	A->G	+	ENSG00000198373	WWP2	protein_coding	Intergenic	.	.	Alu	0.583333
16	69995493	A->G	-	ENSG00000226232	NPIPB14P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.075
16	69995499	A->G	-	ENSG00000226232	NPIPB14P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.121951
16	69999707	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.2
16	69999733	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.166667
16	69999762	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.25
16	69999858	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.230769
16	69999924	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.133333
16	70004640	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.181818
16	70004642	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.666667
16	70004666	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.9
16	70009822	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.272727
16	70009876	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.2
16	70010040	A->G	-	ENSG00000196696	AC009022.1	processed_transcript	Intergenic	.	.	Alu	0.6
16	70027548	A->G	-	ENSG00000255185	PDXDC2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.785714
X	70137878	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.3
X	70137904	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.363636
X	70138015	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.5
X	70138016	A->G	+	ENSG00000089289	IGBP1	protein_coding	Intergenic	.	.	Alu	0.75
7	70157009	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.307692
7	70191944	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	1
7	70191946	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.333333
7	70191947	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.75
7	70207803	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.166667
7	70207864	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.25
1	70212869	A->G	+	ENSG00000116754	SRSF11	protein_coding	Intergenic	.	.	Alu	0.181818
2	70217348	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.125
2	70219596	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.636364
2	70219599	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.727273
2	70238005	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.181818
2	70238331	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.117647
2	70238338	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.125
2	70238382	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.388889
2	70238399	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.333333
2	70238403	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.1875
2	70238409	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.294118
2	70238435	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.285714
2	70238440	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.153846
2	70238443	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.142857
2	70238466	A->G	-	ENSG00000115998	C2orf42	protein_coding	Intergenic	.	.	Alu	0.125
12	70283345	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.2
12	70283354	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.142857
12	70283374	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.461538
12	70283401	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.142857
12	70283447	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.52381
12	70283448	A->G	+	ENSG00000111596	CNOT2	protein_coding	Intergenic	.	.	Alu	0.409091
2	70290068	A->G	-	ENSG00000143977	SNRPG	protein_coding	Intergenic	.	.	Alu	0.166667
16	70329155	A->G	+	ENSG00000157349	DDX19B	protein_coding	Intergenic	.	.	Alu	0.142857
16	70362267	A->G	+	ENSG00000260537	AC012184.2	protein_coding	Intergenic	.	.	Alu	0.4
16	70362278	A->G	+	ENSG00000260537	AC012184.2	protein_coding	Intergenic	.	.	Alu	0.214286
10	70413549	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.62069
10	70413552	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.642857
10	70414893	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.133333
10	70415050	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.0540541
10	70415064	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.0588235
10	70415108	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.0857143
10	70415145	A->G	+	ENSG00000148730	EIF4EBP2	protein_coding	Intergenic	.	.	Alu	0.0666667
7	70440183	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.190476
7	70440185	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.0952381
7	70440191	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.0952381
7	70440208	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.105263
7	70440210	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.176471
7	70440301	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.181818
7	70440310	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.230769
7	70440314	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.615385
7	70440342	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.7
7	70440350	A->G	+	ENSG00000158321	AUTS2	protein_coding	Intergenic	.	.	Alu	0.333333
16	70525804	A->G	+	ENSG00000189091	SF3B3	protein_coding	Intergenic	.	.	Alu	0.181818
16	70525809	A->G	+	ENSG00000189091	SF3B3	protein_coding	Intergenic	.	.	Alu	0.3
18	70689704	A->G	-	.	.	.	Intergenic	.	.	Alu	1
14	70912004	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.133333
14	70924171	A->G	+	ENSG00000100731	PCNX1	protein_coding	Intergenic	.	.	Alu	0.142857
4	70965738	A->G	+	ENSG00000173542	MOB1B	protein_coding	Intergenic	.	.	Alu	0.2
X	71138420	A->G	+	ENSG00000184634	MED12	protein_coding	Intergenic	.	.	Alu	0.4
X	71138426	A->G	+	ENSG00000184634	MED12	protein_coding	Intergenic	.	.	Alu	0.916667
X	71138650	A->G	+	ENSG00000184634	MED12	protein_coding	Intergenic	.	.	Alu	0.545455
X	71138660	A->G	+	ENSG00000184634	MED12	protein_coding	Intergenic	.	.	Alu	0.363636
X	71138720	A->G	+	ENSG00000184634	MED12	protein_coding	Intergenic	.	.	Alu	0.105263
3	71178013	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	71188436	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.1
3	71233551	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71267890	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.25
3	71268187	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.8
3	71268229	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.111111
3	71268231	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.222222
3	71268255	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.142857
3	71277056	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.133333
3	71277097	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.294118
3	71277123	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.157895
3	71277163	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.423077
3	71277195	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.0714286
3	71277208	A->G	-	ENSG00000277539	AC138058.1	sense_intronic	Intergenic	.	.	Alu	0.0740741
3	71313198	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.166667
3	71321719	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.133333
2	71336250	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.25
2	71336255	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.454545
2	71336290	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.117647
2	71336291	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.333333
2	71386219	A->G	+	ENSG00000075292	ZNF638	protein_coding	Intergenic	.	.	Alu	0.238095
X	71411459	A->G	+	ENSG00000147133	TAF1	protein_coding	Intergenic	.	.	Alu	0.133333
14	71440500	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.363636
14	71440528	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.75
14	71453927	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.6
14	71453929	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.857143
14	71453940	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.214286
3	71460098	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.2
3	71476628	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.142857
14	71495973	A->G	+	ENSG00000197555	SIPA1L1	protein_coding	Intergenic	.	.	Alu	0.666667
5	71546421	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	1
5	71546432	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.133333
5	71546462	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.4
5	71546543	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.714286
5	71546567	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.111111
5	71546568	A->G	+	ENSG00000145734	BDP1	protein_coding	Intergenic	.	.	Alu	0.166667
X	71549245	A->G	+	ENSG00000147162	OGT	protein_coding	Intergenic	.	.	Alu	0.0740741
X	71549525	A->G	+	ENSG00000147162	OGT	protein_coding	Intergenic	.	.	Alu	0.181818
3	71558591	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.333333
3	71558606	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.1875
3	71558623	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.25
3	71558659	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.388889
3	71558662	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.111111
3	71558769	A->G	-	ENSG00000114861	FOXP1	protein_coding	Intergenic	.	.	Alu	0.5
12	71658413	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.153846
12	71661552	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.2
12	71661567	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.272727
12	71661620	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.307692
12	71661685	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.2
12	71661686	A->G	-	ENSG00000133858	ZFC3H1	protein_coding	Intergenic	.	.	Alu	0.2
13	71749187	A->G	-	ENSG00000276644	DACH1	protein_coding	Intergenic	.	.	Alu	0.272727
13	71749188	A->G	-	ENSG00000276644	DACH1	protein_coding	Intergenic	.	.	Alu	0.181818
13	71749247	A->G	-	ENSG00000276644	DACH1	protein_coding	Intergenic	.	.	Alu	0.636364
13	71749263	A->G	-	ENSG00000276644	DACH1	protein_coding	Intergenic	.	.	Alu	0.181818
12	71774355	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.0625
12	71774369	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.125
12	71774381	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.125
12	71774415	A->G	+	ENSG00000080371	RAB21	protein_coding	Intergenic	.	.	Alu	0.1
13	71817953	A->G	-	ENSG00000276644	DACH1	protein_coding	Intergenic	.	.	Alu	0.4
12	71850734	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.272727
12	71850777	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.4375
12	71850780	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.166667
12	71850827	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.357143
12	71850836	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.166667
12	71850866	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.5
12	71850888	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.153846
12	71850889	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.230769
12	71850893	A->G	+	ENSG00000121749	TBC1D15	protein_coding	Intergenic	.	.	Alu	0.1875
16	71898257	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.214286
16	71898482	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.142857
16	71898497	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.142857
16	71898498	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.0952381
16	71898533	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.1
16	71898537	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.111111
16	71900045	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.166667
16	71900046	A->G	+	ENSG00000182149	IST1	protein_coding	Intergenic	.	.	Alu	0.272727
1	72134400	A->G	-	ENSG00000172260	NEGR1	protein_coding	Intergenic	.	.	Alu	0.8
1	72134409	A->G	-	ENSG00000172260	NEGR1	protein_coding	Intergenic	.	.	Alu	0.2
1	72134410	A->G	-	ENSG00000172260	NEGR1	protein_coding	Intergenic	.	.	Alu	0.8
15	72337239	A->G	-	ENSG00000260729	AC009690.1	protein_coding	Intergenic	.	.	Alu	0.846154
3	72416442	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.181818
3	72416657	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.16
3	72416686	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0869565
3	72416692	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.173913
3	72416696	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0952381
3	72416701	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.153846
3	72416710	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.0769231
3	72416750	A->G	-	ENSG00000163602	RYBP	protein_coding	Intergenic	.	.	Alu	0.153846
10	72421548	A->G	-	ENSG00000107745	MICU1	protein_coding	Intergenic	.	.	Alu	0.818182
10	72421556	A->G	-	ENSG00000107745	MICU1	protein_coding	Intergenic	.	.	Alu	0.75
10	72421566	A->G	-	ENSG00000107745	MICU1	protein_coding	Intergenic	.	.	Alu	0.818182
15	72483917	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.2
15	72484053	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.25
15	72484122	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.142857
15	72489121	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.111111
15	72489125	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.107143
15	72505830	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.388889
15	72505853	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.1
15	72505862	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	72505865	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.217391
15	72505875	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.230769
15	72505919	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.125
15	72505936	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.181818
15	72505965	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.133333
15	72505977	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.117647
15	72505995	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.153846
15	72505999	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.25
15	72506161	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.277778
15	72506170	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.178571
15	72506171	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.218182
15	72506203	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0666667
15	72506229	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.5
15	72506235	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.5
15	72506243	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.8
15	72506292	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.333333
15	72506295	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.193548
15	72510557	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.2
15	72510565	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0740741
15	72510567	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0769231
15	72510590	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.1
15	72510616	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	1
15	72510622	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	1
15	72510626	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.125
15	72510646	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0689655
15	72510658	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.1
15	72518769	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0869565
15	72522363	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.1
15	72522367	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.111111
15	72522394	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.133333
15	72522499	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.15
15	72540179	A->G	+	ENSG00000166233	ARIH1	protein_coding	Intergenic	.	.	Alu	0.0666667
15	72763250	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.5
15	72763263	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.4
15	72763280	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.285714
15	72763289	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.307692
15	72779296	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.0869565
15	72779314	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.1
15	72779341	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	1
15	72779345	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.222222
15	72779364	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.166667
15	72779373	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.5
15	72779381	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.411765
15	72779386	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.1875
15	72779387	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.1875
15	72779433	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.181818
15	72779438	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.272727
15	72779446	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.818182
15	72779448	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.272727
15	72779509	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.352941
15	72779517	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.125
15	72779518	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.1875
15	72779526	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.227273
15	72779540	A->G	-	ENSG00000159322	ADPGK	protein_coding	Intergenic	.	.	Alu	0.176471
5	72868255	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.125
5	72868269	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.666667
5	72868272	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.142857
5	72868273	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.133333
5	72868275	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.428571
5	72868285	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.142857
5	72868311	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.52381
5	72868317	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.1
5	72868352	A->G	+	ENSG00000083312	TNPO1	protein_coding	Intergenic	.	.	Alu	0.111111
7	72894738	A->G	+	ENSG00000196313	POM121	protein_coding	Intergenic	.	.	Alu	0.153846
7	72894759	A->G	+	ENSG00000196313	POM121	protein_coding	Intergenic	.	.	Alu	0.125
6	72895024	A->G	+	ENSG00000185760	KCNQ5	protein_coding	Intergenic	.	.	Alu	0.866667
7	72967382	A->G	-	ENSG00000155428	TRIM74	protein_coding	Intergenic	.	.	Alu	0.2
7	72967406	A->G	-	ENSG00000155428	TRIM74	protein_coding	Intergenic	.	.	Alu	0.153846
7	72976958	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
7	72977001	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	72994477	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.857143
7	72994479	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.1
7	72996952	A->G	-	ENSG00000174353	STAG3L3	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
14	73003015	A->G	-	ENSG00000165861	ZFYVE1	protein_coding	Intergenic	.	.	Alu	0.181818
3	73005725	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.2
3	73020476	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.2
3	73020603	A->G	+	ENSG00000163605	PPP4R2	protein_coding	Intergenic	.	.	Alu	0.2
11	73053083	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.153846
10	73069974	A->G	-	ENSG00000122884	P4HA1	protein_coding	Intergenic	.	.	Alu	0.333333
10	73069989	A->G	-	ENSG00000122884	P4HA1	protein_coding	Intergenic	.	.	Alu	0.125
10	73070268	A->G	-	ENSG00000122884	P4HA1	protein_coding	Intergenic	.	.	Alu	0.454545
10	73070285	A->G	-	ENSG00000122884	P4HA1	protein_coding	Intergenic	.	.	Alu	0.125
10	73070365	A->G	-	ENSG00000122884	P4HA1	protein_coding	Intergenic	.	.	Alu	0.166667
11	73084529	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.115385
11	73090323	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.08
11	73097070	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.257143
11	73097141	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.0740741
11	73097147	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.107143
11	73129995	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.454545
7	73134591	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
11	73138732	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.235294
11	73138746	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.125
11	73138835	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.461538
11	73138840	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.461538
11	73138850	A->G	-	ENSG00000137478	FCHSD2	protein_coding	Intergenic	.	.	Alu	0.4375
14	73139535	A->G	+	ENSG00000080815	PSEN1	protein_coding	Intergenic	.	.	Alu	0.3
10	73143280	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	1
10	73143284	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	1
10	73143306	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.478261
10	73145777	A->G	-	ENSG00000122882	ECD	protein_coding	Intergenic	.	.	Alu	0.153846
4	73189465	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.727273
4	73189468	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.363636
4	73189489	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.266667
4	73189504	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.333333
4	73189521	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.611111
4	73189535	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.904762
4	73189557	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.1
4	73189593	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.157895
4	73189598	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.190476
4	73189599	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.2
4	73189607	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.3125
4	73189614	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.133333
4	73196029	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.166667
4	73196070	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.166667
4	73196072	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.454545
4	73196137	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.75
4	73196138	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.416667
4	73196141	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.363636
4	73196156	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.2
4	73196192	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.5
4	73196193	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.25
4	73196199	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.333333
4	73196206	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.588235
4	73196235	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.133333
4	73196271	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.4
10	73204938	A->G	-	ENSG00000138286	FAM149B1	protein_coding	Intergenic	.	.	Alu	0.147059
4	73226096	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.375
4	73226104	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.133333
4	73226114	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.266667
4	73226221	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.666667
4	73226242	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.4
4	73226491	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.166667
4	73226542	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0952381
4	73226598	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0833333
4	73226618	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.117647
4	73226665	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.166667
4	73226820	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.15
4	73226826	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.166667
4	73240920	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.454545
4	73240941	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.107143
4	73240947	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.137931
4	73240973	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.59375
4	73240976	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0645161
4	73240977	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.264706
4	73240978	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.25
4	73240981	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.0540541
4	73241029	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.148148
4	73241030	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.32
4	73241035	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.2
4	73241066	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.642857
4	73241083	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.105263
4	73241090	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.133333
4	73241102	A->G	-	ENSG00000132466	ANKRD17	protein_coding	Intergenic	.	.	Alu	0.3
7	73281283	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	73281286	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
7	73282522	A->G	-	.	.	.	Intergenic	.	.	Alu	0.157895
7	73282527	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0769231
7	73406763	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
7	73414937	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
2	73457930	A->G	+	ENSG00000230002	ALMS1-IT1	sense_intronic	Intergenic	.	.	Alu	0.636364
7	73472326	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.142857
7	73472331	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.133333
7	73515609	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.181818
7	73515622	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.153846
7	73515623	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.384615
7	73515630	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.25
7	73515769	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.3
7	73516249	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.117647
7	73516265	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.222222
7	73516267	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.277778
7	73516275	A->G	-	ENSG00000009954	BAZ1B	protein_coding	Intergenic	.	.	Alu	0.238095
7	73684747	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.166667
7	73684761	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.642857
7	73684762	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.2
7	73684765	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.357143
7	73684803	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.363636
7	73684804	A->G	+	ENSG00000071462	BUD23	protein_coding	Intergenic	.	.	Alu	0.181818
11	73685427	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.230769
11	73685488	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	1
11	73693479	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.25
11	73693489	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.181818
11	73693667	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.25
11	73696729	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.2
11	73697398	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.142857
11	73697444	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.133333
11	73697469	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.3
11	73698954	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.166667
11	73699032	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.230769
11	73699035	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.25
11	73699047	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.153846
11	73699132	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.2
11	73699133	A->G	-	ENSG00000175582	RAB6A	protein_coding	Intergenic	.	.	Alu	0.2
6	73704062	A->G	+	ENSG00000156535	CD109	protein_coding	Intergenic	.	.	Alu	1
6	73704064	A->G	+	ENSG00000156535	CD109	protein_coding	Intergenic	.	.	Alu	0.153846
10	73784536	A->G	-	.	.	.	Intergenic	.	.	Alu	0.818182
10	73784562	A->G	-	.	.	.	Intergenic	.	.	Alu	0.818182
10	73784564	A->G	-	.	.	.	Intergenic	.	.	Alu	1
8	73872998	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.285714
8	73873017	A->G	-	ENSG00000258677	AC022826.2	protein_coding	Intergenic	.	.	Alu	0.7
11	73880730	A->G	+	ENSG00000175575	PAAF1	protein_coding	Intergenic	.	.	Alu	0.419355
11	73880757	A->G	+	ENSG00000175575	PAAF1	protein_coding	Intergenic	.	.	Alu	0.457143
11	73892181	A->G	+	ENSG00000175575	PAAF1	protein_coding	Intergenic	.	.	Alu	0.25
11	73892202	A->G	+	ENSG00000175575	PAAF1	protein_coding	Intergenic	.	.	Alu	0.25
8	73966546	A->G	-	ENSG00000154582	ELOC	protein_coding	Intergenic	.	.	Alu	0.153846
X	73989748	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.272727
X	73989846	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	1
X	73989896	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.6875
X	73989897	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.588235
X	73989938	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.461538
X	73989943	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.25
X	73989949	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.3125
X	73990012	A->G	+	ENSG00000225470	JPX	lincRNA	Intergenic	.	.	Alu	0.105263
2	74052683	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.666667
2	74052718	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.1875
2	74052719	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.125
2	74052720	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.125
2	74052723	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.266667
2	74052749	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.5
2	74052750	A->G	+	ENSG00000187605	TET3	protein_coding	Intergenic	.	.	Alu	0.166667
14	74091627	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.333333
14	74091653	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.181818
14	74091654	A->G	+	ENSG00000205659	LIN52	protein_coding	Intergenic	.	.	Alu	0.636364
7	74178465	A->G	+	ENSG00000106682	EIF4H	protein_coding	Intergenic	.	.	Alu	0.6
10	74185947	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.2
10	74185948	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.7
10	74185977	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.25
10	74185987	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.461538
10	74185989	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.166667
10	74204860	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.2
10	74204929	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.285714
10	74204942	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.454545
10	74204946	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.333333
10	74205005	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.25
10	74205582	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	0.153846
X	74208284	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.3
X	74208294	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.153846
7	74217346	A->G	+	ENSG00000086730	LAT2	protein_coding	Intergenic	.	.	Alu	0.2
X	74223557	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.142857
X	74225473	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	1
X	74225527	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	1
X	74225601	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.454545
X	74225612	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.277778
X	74225620	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.647059
X	74225628	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.1
X	74225645	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0833333
X	74225656	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.130435
X	74225735	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.153846
X	74225736	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.153846
X	74225752	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.363636
7	74228678	A->G	+	ENSG00000086730	LAT2	protein_coding	Intergenic	.	.	Alu	0.181818
X	74265939	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.214286
X	74265942	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.107143
X	74265969	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	1
X	74265972	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	1
X	74265973	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0740741
X	74265977	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.310345
X	74265990	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0952381
X	74265998	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.45
X	74266004	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.363636
X	74266028	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.16129
X	74266034	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
X	74266054	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.241379
X	74266070	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.136364
X	74266071	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0909091
X	74266090	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.266667
X	74266093	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.375
X	74266097	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.117647
X	74266098	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.111111
X	74266120	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.608696
X	74266126	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0833333
X	74266131	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.130435
X	74266144	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0833333
X	74266145	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.333333
X	74266153	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.333333
X	74266158	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.148148
X	74266166	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0769231
X	74266169	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
X	74266173	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.08
X	74266189	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.15
X	74266266	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.32
X	74266285	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.0909091
X	74266286	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.1
X	74266294	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.307692
X	74266299	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.173913
X	74266317	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.416667
X	74266318	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.454545
X	74266333	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
X	74266339	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.421053
X	74266368	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.230769
X	74266394	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.125
X	74266407	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.2
X	74266408	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.3125
X	74266411	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.761905
X	74266444	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.2
X	74266463	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.375
X	74266476	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.222222
X	74266484	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.210526
X	74266507	A->G	-	ENSG00000230590	FTX	lincRNA	Intergenic	.	.	Alu	0.166667
16	74312803	A->G	-	ENSG00000259972	AC009120.2	processed_transcript	Intergenic	.	.	Alu	0.117647
16	74312851	A->G	-	ENSG00000259972	AC009120.2	processed_transcript	Intergenic	.	.	Alu	0.631579
16	74312873	A->G	-	ENSG00000259972	AC009120.2	processed_transcript	Intergenic	.	.	Alu	0.75
16	74313922	A->G	-	ENSG00000259972	AC009120.2	processed_transcript	Intergenic	.	.	Alu	0.363636
16	74313955	A->G	-	ENSG00000259972	AC009120.2	processed_transcript	Intergenic	.	.	Alu	0.2
16	74314286	A->G	-	ENSG00000259972	AC009120.2	processed_transcript	Intergenic	.	.	Alu	0.2
X	74571975	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
X	74572061	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
X	74572117	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
X	74573982	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
X	74574092	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
10	74595877	A->G	+	ENSG00000156110	ADK	protein_coding	Intergenic	.	.	Alu	1
16	74642366	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.230769
16	74642403	A->G	-	ENSG00000168411	RFWD3	protein_coding	Intergenic	.	.	Alu	0.222222
14	74677348	A->G	-	ENSG00000119682	AREL1	protein_coding	Intergenic	.	.	Alu	0.272727
14	74677349	A->G	-	ENSG00000119682	AREL1	protein_coding	Intergenic	.	.	Alu	0.272727
14	74677592	A->G	-	ENSG00000119682	AREL1	protein_coding	Intergenic	.	.	Alu	0.3
15	74796515	A->G	+	ENSG00000103653	CSK	protein_coding	Intergenic	.	.	Alu	0.230769
14	74834115	A->G	+	ENSG00000119596	YLPM1	protein_coding	Intergenic	.	.	Alu	0.2
7	74839953	A->G	-	ENSG00000196275	GTF2IRD2	protein_coding	Intergenic	.	.	Alu	0.363636
7	74839954	A->G	-	ENSG00000196275	GTF2IRD2	protein_coding	Intergenic	.	.	Alu	0.181818
7	74839998	A->G	-	ENSG00000196275	GTF2IRD2	protein_coding	Intergenic	.	.	Alu	0.307692
7	74842260	A->G	-	ENSG00000196275	GTF2IRD2	protein_coding	Intergenic	.	.	Alu	0.3
10	74845139	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.2
10	74845441	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.285714
10	74845662	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.166667
15	74847154	A->G	-	ENSG00000140497	SCAMP2	protein_coding	Intergenic	.	.	Alu	0.5
10	74856790	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.25
7	74870403	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
7	74870433	A->G	-	.	.	.	Intergenic	.	.	Alu	0.666667
7	74870440	A->G	-	.	.	.	Intergenic	.	.	Alu	1
7	74870630	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
7	74871075	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	74876420	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
7	74876424	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
7	74876429	A->G	-	.	.	.	Intergenic	.	.	Alu	0.533333
7	74876430	A->G	-	.	.	.	Intergenic	.	.	Alu	0.428571
7	74876557	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
7	74876558	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	74876570	A->G	-	.	.	.	Intergenic	.	.	Alu	0.214286
7	74876582	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
7	74876918	A->G	-	.	.	.	Intergenic	.	.	Alu	0.533333
7	74876940	A->G	-	.	.	.	Intergenic	.	.	Alu	0.461538
7	74876953	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
7	74876954	A->G	-	.	.	.	Intergenic	.	.	Alu	0.176471
7	74876983	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0689655
7	74876989	A->G	-	.	.	.	Intergenic	.	.	Alu	0.16
7	74876993	A->G	-	.	.	.	Intergenic	.	.	Alu	0.15
7	74877015	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
7	74877016	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
7	74878209	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0645161
7	74878710	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0588235
7	74878824	A->G	-	.	.	.	Intergenic	.	.	Alu	0.222222
7	74878846	A->G	-	.	.	.	Intergenic	.	.	Alu	0.173913
7	74878847	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0833333
7	74879103	A->G	-	.	.	.	Intergenic	.	.	Alu	0.157895
7	74879104	A->G	-	.	.	.	Intergenic	.	.	Alu	0.1
7	74879105	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
7	74879142	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0588235
7	74879156	A->G	-	.	.	.	Intergenic	.	.	Alu	0.0526316
7	74879175	A->G	-	.	.	.	Intergenic	.	.	Alu	1
7	74881482	A->G	-	.	.	.	Intergenic	.	.	Alu	0.105263
7	74881486	A->G	-	.	.	.	Intergenic	.	.	Alu	0.285714
7	74881511	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	74881516	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
7	74986344	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.285714
7	74986370	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.533333
7	74986371	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.529412
7	74986376	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.117647
7	74986380	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.133333
7	74986429	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.266667
7	74986439	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.214286
7	74986440	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.142857
7	74987354	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.166667
10	74994789	A->G	+	ENSG00000156650	KAT6B	protein_coding	Intergenic	.	.	Alu	0.153846
7	75011264	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.166667
7	75014354	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.153846
7	75014364	A->G	+	ENSG00000274070	CASTOR2	protein_coding	Intergenic	.	.	Alu	0.166667
16	75050931	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.166667
16	75050961	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.133333
16	75050964	A->G	+	ENSG00000186187	ZNRF1	protein_coding	Intergenic	.	.	Alu	0.133333
17	75224701	A->G	+	ENSG00000125450	NUP85	protein_coding	Intergenic	.	.	Alu	0.181818
17	75224711	A->G	+	ENSG00000125450	NUP85	protein_coding	Intergenic	.	.	Alu	0.363636
17	75224712	A->G	+	ENSG00000125450	NUP85	protein_coding	Intergenic	.	.	Alu	0.636364
17	75224721	A->G	+	ENSG00000125450	NUP85	protein_coding	Intergenic	.	.	Alu	0.3
17	75224738	A->G	+	ENSG00000125450	NUP85	protein_coding	Intergenic	.	.	Alu	0.230769
17	75224787	A->G	+	ENSG00000125450	NUP85	protein_coding	Intergenic	.	.	Alu	0.454545
17	75259086	A->G	-	ENSG00000125447	GGA3	protein_coding	Intergenic	.	.	Alu	0.272727
17	75259092	A->G	-	ENSG00000125447	GGA3	protein_coding	Intergenic	.	.	Alu	0.272727
17	75324268	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.214286
17	75324447	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.117647
17	75324549	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.25
17	75324554	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.307692
17	75324664	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.2
17	75324678	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.2
17	75346322	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.7
17	75346396	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.166667
17	75346413	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.153846
17	75346414	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.307692
17	75346420	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.166667
17	75346450	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.153846
17	75346477	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.2
17	75346482	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.142857
17	75346643	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.133333
17	75346715	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.153846
17	75346720	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.347826
17	75346750	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.1
17	75346764	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.272727
15	75351894	A->G	-	ENSG00000140398	NEIL1	protein_coding	Intergenic	.	.	Alu	0.272727
15	75351895	A->G	-	ENSG00000140398	NEIL1	protein_coding	Intergenic	.	.	Alu	0.272727
17	75355903	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.133333
17	75355904	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.133333
17	75355907	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.461538
17	75355914	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.25
17	75355969	A->G	-	ENSG00000177885	GRB2	protein_coding	Intergenic	.	.	Alu	0.7
16	75368734	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intergenic	.	.	Alu	0.166667
16	75368757	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intergenic	.	.	Alu	0.2
16	75368814	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intergenic	.	.	Alu	0.2
16	75387273	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intergenic	.	.	Alu	0.3
7	75388135	A->G	+	ENSG00000205583	STAG3L1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	75396231	A->G	+	ENSG00000178809	TRIM73	protein_coding	Intergenic	.	.	Alu	0.2
7	75489031	A->G	-	.	.	.	Intergenic	.	.	Alu	0.230769
7	75489061	A->G	-	.	.	.	Intergenic	.	.	Alu	0.4375
7	75489062	A->G	-	.	.	.	Intergenic	.	.	Alu	0.933333
1	75546416	A->G	-	ENSG00000137968	SLC44A5	protein_coding	Intergenic	.	.	Alu	1
17	75593868	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.133333
17	75593869	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.214286
17	75598301	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.1
17	75598323	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.0909091
17	75598457	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.166667
17	75598467	A->G	+	ENSG00000266714	MYO15B	protein_coding	Intergenic	.	.	Alu	0.210526
16	75651439	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.25
16	75651468	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.117647
16	75651473	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.2
16	75651523	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.217391
16	75651526	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0909091
16	75651568	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.444444
16	75651569	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0740741
16	75651582	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.111111
16	75651610	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.333333
16	75651631	A->G	+	ENSG00000166848	TERF2IP	protein_coding	Intergenic	.	.	Alu	0.0833333
17	75687558	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.214286
17	75687568	A->G	+	ENSG00000161526	SAP30BP	protein_coding	Intergenic	.	.	Alu	0.125
17	75806184	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.545455
17	75806200	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.230769
17	75806201	A->G	+	ENSG00000132478	UNK	protein_coding	Intergenic	.	.	Alu	0.357143
17	76055870	A->G	-	ENSG00000167881	SRP68	protein_coding	Intergenic	.	.	Alu	0.5
7	76336541	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.230769
7	76337595	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.166667
7	76337627	A->G	-	ENSG00000170027	YWHAG	protein_coding	Intergenic	.	.	Alu	0.2
12	76414547	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.181818
5	76418092	A->G	+	ENSG00000145703	IQGAP2	protein_coding	Intergenic	.	.	Alu	0.454545
7	76435997	A->G	-	ENSG00000188372	ZP3	protein_coding	Intergenic	.	.	Alu	0.263158
7	76435999	A->G	-	ENSG00000188372	ZP3	protein_coding	Intergenic	.	.	Alu	0.857143
12	76438125	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.153846
5	76463093	A->G	+	ENSG00000145703	IQGAP2	protein_coding	Intergenic	.	.	Alu	0.2
12	76483328	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.461538
12	76483337	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.153846
12	76483370	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.181818
12	76483396	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.615385
12	76483399	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.352941
12	76483464	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.285714
12	76483481	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.133333
12	76483507	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.25
12	76483737	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.1
12	76483747	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0714286
12	76483757	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.458333
12	76483772	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.111111
12	76483803	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.105263
12	76483812	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.136364
12	76483819	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.136364
12	76483839	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0909091
12	76483852	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.1
12	76483863	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.666667
12	76483878	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.148148
12	76483879	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0714286
12	76483917	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.222222
12	76483947	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.166667
12	76483948	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.192308
12	76483956	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0833333
12	76483964	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.08
12	76487093	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.105263
12	76487103	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.263158
12	76487223	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.111111
12	76487224	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.111111
12	76498796	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.25
12	76498822	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0833333
12	76498835	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.15
12	76498858	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.25
12	76516844	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0833333
12	76516907	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	1
12	76516912	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	1
12	76516917	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.333333
12	76526723	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.08
12	76526774	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.225806
12	76526779	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.111111
12	76530132	A->G	-	ENSG00000091039	OSBPL8	protein_coding	Intergenic	.	.	Alu	0.0697674
7	76616065	A->G	+	ENSG00000205485	AC004980.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.368421
7	76616073	A->G	+	ENSG00000205485	AC004980.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.263158
7	76616074	A->G	+	ENSG00000205485	AC004980.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	1
7	76616097	A->G	+	ENSG00000205485	AC004980.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.666667
7	76616099	A->G	+	ENSG00000205485	AC004980.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.782609
7	76616102	A->G	+	ENSG00000205485	AC004980.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.666667
12	76829346	A->G	+	ENSG00000186908	ZDHHC17	protein_coding	Intergenic	.	.	Alu	0.636364
18	76844197	A->G	+	ENSG00000130856	ZNF236	protein_coding	Intergenic	.	.	Alu	0.3
5	76957994	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.263158
5	76957997	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.117647
5	76958038	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.333333
5	76958052	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.117647
5	76958074	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.294118
5	76958104	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.0952381
5	76967157	A->G	+	ENSG00000145708	CRHBP	protein_coding	Intergenic	.	.	Alu	0.181818
7	77063819	A->G	+	ENSG00000259628	AC007000.3	processed_transcript	Intergenic	.	.	Alu	0.176471
7	77063836	A->G	+	ENSG00000259628	AC007000.3	processed_transcript	Intergenic	.	.	Alu	0.142857
7	77063926	A->G	+	ENSG00000259628	AC007000.3	processed_transcript	Intergenic	.	.	Alu	0.176471
5	77443951	A->G	-	ENSG00000164253	WDR41	protein_coding	Intergenic	.	.	Alu	0.153846
14	77526906	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.133333
14	77526978	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.125
14	77528369	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.133333
14	77529111	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.181818
14	77529696	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.230769
14	77529715	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.166667
14	77529760	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.230769
14	77529761	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.153846
14	77529811	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.25
14	77531612	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	1
14	77531619	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.133333
14	77531652	A->G	-	ENSG00000100596	SPTLC2	protein_coding	Intergenic	.	.	Alu	0.235294
7	77714775	A->G	+	ENSG00000187257	RSBN1L	protein_coding	Intergenic	.	.	Alu	0.7
7	77714809	A->G	+	ENSG00000187257	RSBN1L	protein_coding	Intergenic	.	.	Alu	0.5
7	77714811	A->G	+	ENSG00000187257	RSBN1L	protein_coding	Intergenic	.	.	Alu	0.5
7	77715008	A->G	+	ENSG00000187257	RSBN1L	protein_coding	Intergenic	.	.	Alu	1
11	77761027	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.25
11	77761050	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.428571
11	77761056	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.357143
11	77761101	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.181818
11	77761898	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.37037
11	77761899	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.269231
11	77761958	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.133333
11	77761970	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.166667
11	77761973	A->G	-	ENSG00000048649	RSF1	protein_coding	Intergenic	.	.	Alu	0.166667
X	77778995	A->G	-	ENSG00000085224	ATRX	protein_coding	Intergenic	.	.	Alu	0.2
X	77779060	A->G	-	ENSG00000085224	ATRX	protein_coding	Intergenic	.	.	Alu	0.333333
X	77779066	A->G	-	ENSG00000085224	ATRX	protein_coding	Intergenic	.	.	Alu	0.615385
4	77790786	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.5
4	77790787	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.7
4	77790853	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.333333
4	77790863	A->G	-	ENSG00000138767	CNOT6L	protein_coding	Intergenic	.	.	Alu	0.363636
X	77841903	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.214286
X	77841909	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.153846
X	77841916	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.153846
X	77847678	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.125
X	77847679	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.133333
X	77847735	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.105263
X	77847749	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.1875
X	77851044	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.125
X	77851067	A->G	-	ENSG00000102158	MAGT1	protein_coding	Intergenic	.	.	Alu	0.133333
9	77870433	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.272727
9	77870464	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.7
9	77870474	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	1
9	77870491	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.105263
7	77938604	A->G	-	ENSG00000006576	PHTF2	protein_coding	Intergenic	.	.	Alu	1
17	77970862	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.272727
17	77972312	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.181818
17	77972361	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.2
17	77972401	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.333333
17	77972427	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.363636
17	77972453	A->G	+	ENSG00000078687	TNRC6C	protein_coding	Intergenic	.	.	Alu	0.2
1	77974084	A->G	-	ENSG00000162613	FUBP1	protein_coding	Intergenic	.	.	Alu	0.0833333
9	77975611	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0535714
9	77975645	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0606061
9	77975660	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0857143
9	77975668	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0645161
9	77975711	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0909091
9	77975764	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.4
9	77984332	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.157895
9	77984357	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.117647
9	77984365	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.1875
9	77984372	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.111111
9	77984433	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
9	77986584	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.214286
9	77986598	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0689655
9	77986622	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.142857
9	77986644	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.06
9	77986650	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.04
9	77986688	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0819672
9	77986694	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0634921
9	77986706	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.296875
9	77986710	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0769231
9	77986734	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0566038
9	77986775	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.25
9	77986776	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.26087
9	78008711	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.153846
9	78008716	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.25
9	78012334	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.1
9	78012354	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.09375
9	78012366	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.05
9	78012375	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0540541
9	78021150	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.0625
9	78021293	A->G	-	ENSG00000156052	GNAQ	protein_coding	Intergenic	.	.	Alu	0.125
11	78291664	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.285714
11	78320652	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.166667
11	78363682	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.111111
11	78367928	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0307692
11	78367955	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.2
11	78389471	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.153846
11	78389502	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.3125
11	78389515	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.666667
17	78394061	A->G	+	ENSG00000087157	PGS1	protein_coding	Intergenic	.	.	Alu	0.2
11	78396694	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0714286
11	78396776	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.08
5	78403844	A->G	+	ENSG00000085365	SCAMP1	protein_coding	Intergenic	.	.	Alu	0.818182
11	78405196	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0666667
11	78405223	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.0714286
11	78405237	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.105263
11	78405263	A->G	-	ENSG00000033327	GAB2	protein_coding	Intergenic	.	.	Alu	0.210526
16	78455363	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
16	78455377	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
16	78455407	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.529412
16	78455408	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.176471
16	78455421	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.277778
16	78455424	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.882353
16	78455431	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.272727
16	78455476	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.318182
16	78455490	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.111111
16	78455509	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.823529
16	78455522	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.35
16	78455532	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.25
16	78455555	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.125
16	78472729	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.272727
16	78472754	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.181818
16	78509906	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.3
16	78667468	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.153846
16	78667491	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78667493	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78667507	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.307692
16	78667550	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.133333
16	78667577	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
16	78667603	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.2
16	78713192	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.125
17	78757059	A->G	-	ENSG00000108669	CYTH1	protein_coding	Intergenic	.	.	Alu	0.166667
17	78757072	A->G	-	ENSG00000108669	CYTH1	protein_coding	Intergenic	.	.	Alu	0.176471
17	78757086	A->G	-	ENSG00000108669	CYTH1	protein_coding	Intergenic	.	.	Alu	0.5
17	78790455	A->G	-	ENSG00000055483	USP36	protein_coding	Intergenic	.	.	Alu	0.2
16	78884151	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.363636
15	78898489	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
15	78899285	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
15	78899297	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
15	78899331	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
15	78899337	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
15	78899500	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
15	78899517	A->G	+	.	.	.	Intergenic	.	.	Alu	0.133333
15	78899549	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
15	78899593	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
16	78934412	A->G	+	ENSG00000186153	WWOX	protein_coding	Intergenic	.	.	Alu	0.142857
10	79094822	A->G	+	ENSG00000108175	ZMIZ1	protein_coding	Intergenic	.	.	Alu	0.2
10	79094828	A->G	+	ENSG00000108175	ZMIZ1	protein_coding	Intergenic	.	.	Alu	0.166667
10	79094859	A->G	+	ENSG00000108175	ZMIZ1	protein_coding	Intergenic	.	.	Alu	0.166667
5	79239619	A->G	+	ENSG00000152409	JMY	protein_coding	Intergenic	.	.	Alu	1
5	79239629	A->G	+	ENSG00000152409	JMY	protein_coding	Intergenic	.	.	Alu	1
9	79586287	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.142857
9	79586295	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.615385
9	79586312	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.6
9	79598044	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.133333
9	79598045	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.125
9	79598129	A->G	+	ENSG00000106829	TLE4	protein_coding	Intergenic	.	.	Alu	0.105263
10	79732853	A->G	-	ENSG00000225484	NUTM2B-AS1	antisense	Intergenic	.	.	Alu	0.181818
10	79732963	A->G	-	ENSG00000225484	NUTM2B-AS1	antisense	Intergenic	.	.	Alu	0.153846
12	79846637	A->G	-	ENSG00000058272	PPP1R12A	protein_coding	Intergenic	.	.	Alu	0.2
12	79926040	A->G	-	ENSG00000058272	PPP1R12A	protein_coding	Intergenic	.	.	Alu	0.181818
8	79947763	A->G	-	ENSG00000147586	MRPS28	protein_coding	Intergenic	.	.	Alu	0.2
15	80066510	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.8
15	80066688	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.315789
15	80066695	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.117647
15	80066698	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.117647
15	80066701	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.166667
15	80066721	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.125
15	80066737	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.2
15	80066738	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.5
15	80066739	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.615385
15	80066741	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.214286
15	80066776	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.214286
15	80066777	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.571429
15	80066786	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.454545
15	80066812	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.55
15	80066818	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.166667
15	80066823	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.130435
15	80066849	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0769231
15	80066860	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.5
15	80092267	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0909091
15	80092277	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0612245
15	80092280	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.0384615
15	80092385	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.153846
15	80092386	A->G	+	ENSG00000086666	ZFAND6	protein_coding	Intergenic	.	.	Alu	0.138462
10	80177072	A->G	-	ENSG00000122359	ANXA11	protein_coding	Intergenic	.	.	Alu	0.2
6	80342681	A->G	+	ENSG00000083123	BCKDHB	protein_coding	Intergenic	.	.	Alu	0.363636
10	80483970	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.3
10	80483989	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.125
10	80484010	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.133333
10	80484059	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.133333
10	80484069	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.2
10	80484083	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.153846
10	80484085	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.181818
10	80484087	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.272727
10	80484114	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.153846
10	80484147	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.307692
10	80484152	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.2
10	80484166	A->G	+	ENSG00000108219	TSPAN14	protein_coding	Intergenic	.	.	Alu	0.272727
17	81247720	A->G	+	ENSG00000157637	SLC38A10	protein_coding	Intergenic	.	.	Alu	0.913043
5	81453728	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.5
5	81453729	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.916667
5	81453737	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.416667
5	81463443	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.166667
5	81463456	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.107143
5	81463482	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.102041
5	81463483	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.104167
5	81463488	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0681818
5	81463495	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.047619
5	81463532	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.075
5	81463543	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.488889
5	81463551	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0384615
5	81463576	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.5
5	81463600	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0689655
5	81463613	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	81463617	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.828571
5	81463618	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.1875
5	81463637	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.075
5	81463643	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.128205
5	81463659	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.829268
5	81463811	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.1
5	81463841	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0689655
5	81463866	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.130435
5	81463906	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.190476
5	81463907	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.45
5	81463982	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	81463996	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.166667
5	81464001	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.633333
5	81464015	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.514286
5	81464019	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.142857
5	81464020	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.111111
5	81464036	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	81464060	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0606061
5	81501687	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.166667
5	81501691	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.25
5	81501695	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.25
5	81501769	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.272727
5	81542888	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.25
5	81542890	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.235294
17	81595709	A->G	-	ENSG00000182446	NPLOC4	protein_coding	Intergenic	.	.	Alu	0.2
17	81595713	A->G	-	ENSG00000182446	NPLOC4	protein_coding	Intergenic	.	.	Alu	0.2
5	81629047	A->G	-	ENSG00000145687	SSBP2	protein_coding	Intergenic	.	.	Alu	0.0652174
17	81856466	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.153846
17	81856718	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.111111
17	81856746	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.111111
17	81856747	A->G	-	ENSG00000185624	P4HB	protein_coding	Intergenic	.	.	Alu	0.210526
17	82264861	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.3
17	82264870	A->G	-	ENSG00000141551	CSNK1D	protein_coding	Intergenic	.	.	Alu	0.315789
15	82386574	A->G	+	ENSG00000259429	UBE2Q2P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.6
15	82386586	A->G	+	ENSG00000259429	UBE2Q2P2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
17	82526732	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.2
17	82526772	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.2
17	82530370	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.4
17	82530372	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.2
17	82530437	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.2
17	82533974	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.142857
17	82537548	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.3
17	82537715	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.125
17	82537802	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.2
17	82537968	A->G	+	ENSG00000141568	FOXK2	protein_coding	Intergenic	.	.	Alu	0.166667
15	83052763	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.15625
15	83052769	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.185185
15	83052795	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.181818
15	83052882	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.208333
15	83054579	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.157895
15	83054592	A->G	-	ENSG00000064726	BTBD1	protein_coding	Intergenic	.	.	Alu	0.0882353
4	83057828	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.8
4	83057842	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.153846
4	83057843	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.166667
4	83057847	A->G	+	ENSG00000138663	COPS4	protein_coding	Intergenic	.	.	Alu	0.142857
9	83695301	A->G	-	ENSG00000135018	UBQLN1	protein_coding	Intergenic	.	.	Alu	0.133333
15	84638858	A->G	-	ENSG00000176700	SCAND2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
15	84638859	A->G	-	ENSG00000176700	SCAND2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.3
15	84638886	A->G	-	ENSG00000176700	SCAND2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.214286
15	84638899	A->G	-	ENSG00000176700	SCAND2P	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.133333
15	84714087	A->G	-	ENSG00000140612	SEC11A	protein_coding	Intergenic	.	.	Alu	0.2
2	85007033	A->G	+	ENSG00000176407	KCMF1	protein_coding	Intergenic	.	.	Alu	0.2
15	85040185	A->G	+	ENSG00000073417	PDE8A	protein_coding	Intergenic	.	.	Alu	0.214286
15	85040187	A->G	+	ENSG00000073417	PDE8A	protein_coding	Intergenic	.	.	Alu	0.357143
16	85597031	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.214286
16	85597081	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.111111
16	85597082	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.111111
16	85597096	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.428571
16	85597108	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.315789
16	85597213	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.285714
16	85597241	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.1
16	85597294	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	1
16	85597299	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.44
16	85597306	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.08
2	85610179	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.25
2	85610208	A->G	-	ENSG00000168887	C2orf68	protein_coding	Intergenic	.	.	Alu	0.5
6	85628158	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.133333
6	85628184	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.214286
6	85633747	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.0769231
6	85633760	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.388889
6	85633777	A->G	-	ENSG00000135316	SYNCRIP	protein_coding	Intergenic	.	.	Alu	0.25
16	85671534	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.6
16	85671601	A->G	+	ENSG00000131149	GSE1	protein_coding	Intergenic	.	.	Alu	0.3
11	85955058	A->G	-	.	.	.	Intergenic	.	.	Alu	0.833333
11	85955060	A->G	-	.	.	.	Intergenic	.	.	Alu	0.272727
11	86049706	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.4
11	86049728	A->G	-	ENSG00000073921	PICALM	protein_coding	Intergenic	.	.	Alu	0.166667
2	86473635	A->G	+	ENSG00000115548	KDM3A	protein_coding	Intergenic	.	.	Alu	0.6
10	86491268	A->G	-	ENSG00000062650	WAPL	protein_coding	Intergenic	.	.	Alu	0.538462
10	86491272	A->G	-	ENSG00000062650	WAPL	protein_coding	Intergenic	.	.	Alu	0.230769
10	86491304	A->G	-	ENSG00000062650	WAPL	protein_coding	Intergenic	.	.	Alu	0.166667
1	86869913	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.105263
1	86890637	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.25
1	86891182	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.4375
1	86891321	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.333333
1	86898612	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.0952381
1	86898678	A->G	-	ENSG00000183291	SELENOF	protein_coding	Intergenic	.	.	Alu	0.153846
4	87022012	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.6875
4	87022054	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.181818
4	87022084	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.263158
4	87022085	A->G	+	ENSG00000172493	AFF1	protein_coding	Intergenic	.	.	Alu	0.315789
10	87104293	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.545455
10	87104410	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.272727
10	87111623	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.153846
10	87111687	A->G	+	ENSG00000122376	SHLD2	protein_coding	Intergenic	.	.	Alu	0.214286
6	87187571	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.2
6	87187640	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.166667
6	87195813	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.181818
6	87195818	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.153846
6	87195832	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.166667
6	87195842	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.210526
6	87195907	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.125
6	87195908	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.125
6	87197697	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.0909091
10	87208394	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.166667
10	87208403	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.153846
10	87208414	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.166667
10	87208418	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.363636
10	87208423	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.3
6	87230720	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.117647
6	87247063	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.181818
6	87249978	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.117647
6	87250314	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	0.307692
6	87250344	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	1
6	87250349	A->G	+	ENSG00000188994	ZNF292	protein_coding	Intergenic	.	.	Alu	1
10	87315644	A->G	-	ENSG00000223482	NUTM2A-AS1	antisense	Intergenic	.	.	Alu	0.333333
4	87335889	A->G	-	ENSG00000255723	AC108516.2	processed_transcript	Intergenic	.	.	Alu	0.133333
4	87336015	A->G	-	ENSG00000255723	AC108516.2	processed_transcript	Intergenic	.	.	Alu	0.2
2	87481999	A->G	+	ENSG00000284879	AC133644.3	processed_transcript	Intergenic	.	.	Alu	0.6
6	87547764	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.545455
6	87547777	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.363636
6	87547778	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.363636
6	87547793	A->G	-	ENSG00000146282	RARS2	protein_coding	Intergenic	.	.	Alu	0.2
16	87731099	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.181818
16	87731148	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.285714
16	87731192	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.166667
16	87731201	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.153846
16	87731202	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.538462
16	87731238	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.461538
16	87731244	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.2
16	87731253	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.5
16	87731268	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.222222
16	87731314	A->G	-	ENSG00000104731	KLHDC4	protein_coding	Intergenic	.	.	Alu	0.25
3	87841636	A->G	+	.	.	.	Intergenic	.	.	Alu	0.129032
3	87841644	A->G	+	.	.	.	Intergenic	.	.	Alu	0.190476
3	87841645	A->G	+	.	.	.	Intergenic	.	.	Alu	0.428571
3	87841675	A->G	+	.	.	.	Intergenic	.	.	Alu	0.357143
3	87841691	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
3	87841780	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
3	87841832	A->G	+	.	.	.	Intergenic	.	.	Alu	0.833333
3	87841855	A->G	+	.	.	.	Intergenic	.	.	Alu	0.15
3	87841860	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0952381
3	87842424	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
3	87842436	A->G	+	.	.	.	Intergenic	.	.	Alu	0.928571
3	87864694	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
3	87864816	A->G	+	.	.	.	Intergenic	.	.	Alu	0.411765
10	87891739	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.0645161
10	87908613	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.25
10	87908617	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.333333
10	87908658	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.181818
10	87908673	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.181818
3	87937660	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
3	87937674	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
3	87937677	A->G	+	.	.	.	Intergenic	.	.	Alu	0.363636
3	87937721	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
3	87937738	A->G	+	.	.	.	Intergenic	.	.	Alu	0.384615
3	87937874	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
3	87937903	A->G	+	.	.	.	Intergenic	.	.	Alu	0.148148
10	87947636	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.3
10	87947637	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.3
10	87947770	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.125
10	87947779	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.08
10	87947815	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.166667
10	87947831	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.136364
10	87947840	A->G	+	ENSG00000171862	PTEN	protein_coding	Intergenic	.	.	Alu	0.111111
4	88013622	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.142857
4	88016840	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.307692
4	88016899	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.117647
4	88023148	A->G	+	ENSG00000118762	PKD2	protein_coding	Intergenic	.	.	Alu	0.181818
3	88089020	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.4375
3	88089025	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.588235
3	88089047	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.153846
3	88089237	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.157895
3	88089325	A->G	+	ENSG00000163320	CGGBP1	protein_coding	Intergenic	.	.	Alu	0.2
3	88159599	A->G	+	ENSG00000179021	C3orf38	protein_coding	Intergenic	.	.	Alu	0.0857143
9	88407202	A->G	+	ENSG00000106723	SPIN1	protein_coding	Intergenic	.	.	Alu	0.125
4	88602362	A->G	+	ENSG00000285385	AC098582.1	protein_coding	Intergenic	.	.	Alu	0.181818
2	88608769	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.133333
2	88608840	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.125
2	88608989	A->G	-	ENSG00000172071	EIF2AK3	protein_coding	Intergenic	.	.	Alu	0.3
1	88873311	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.166667
1	88874404	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.266667
1	88874417	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.142857
1	88874418	A->G	-	ENSG00000137947	GTF2B	protein_coding	Intergenic	.	.	Alu	0.0909091
15	89094967	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.238095
15	89094979	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.107143
15	89095013	A->G	+	ENSG00000140526	ABHD2	protein_coding	Intergenic	.	.	Alu	0.0810811
14	89246632	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.142857
14	89318221	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.25
16	89337548	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
14	89355431	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.833333
16	89368285	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.181818
16	89368292	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.125
16	89368308	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.333333
16	89368313	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.142857
16	89368329	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.238095
16	89368335	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.65
16	89368345	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.153846
16	89368348	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.166667
16	89384978	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.176471
16	89385007	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.133333
16	89385024	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.230769
16	89385042	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.181818
16	89385050	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.384615
16	89385104	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.181818
16	89385105	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.333333
16	89385110	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.25
16	89385112	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.666667
16	89385113	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.272727
16	89385157	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.307692
16	89385165	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.5
16	89385225	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.6
16	89385227	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.4
16	89385242	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
16	89388380	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.3
16	89388381	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.7
16	89388402	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.181818
16	89388403	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
14	89392752	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.5
14	89392765	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.230769
16	89393311	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0952381
16	89393340	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0952381
16	89393389	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
16	89393391	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.3
16	89393409	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.2
16	89393614	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0952381
14	89394309	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.307692
14	89394315	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.181818
14	89394341	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.111111
14	89394342	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.111111
16	89405384	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.4
16	89405402	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	1
16	89405444	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.133333
16	89405457	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.266667
16	89415121	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.153846
16	89447943	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.25
16	89447998	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.166667
14	89467712	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.136364
14	89467716	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.0952381
14	89467728	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	1
14	89467734	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.526316
14	89467736	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.727273
14	89467740	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.08
16	89477260	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0434783
16	89477265	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0681818
16	89477287	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0377358
16	89477289	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0408163
16	89477290	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.125
16	89477391	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.0769231
16	89477424	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.210526
16	89477428	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.5
16	89477452	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.666667
16	89477453	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	1
16	89479013	A->G	-	ENSG00000167522	ANKRD11	protein_coding	Intergenic	.	.	Alu	0.214286
14	89510812	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.3
16	89516430	A->G	+	ENSG00000197912	SPG7	protein_coding	Intergenic	.	.	Alu	0.636364
16	89516431	A->G	+	ENSG00000197912	SPG7	protein_coding	Intergenic	.	.	Alu	0.25
16	89516611	A->G	+	ENSG00000197912	SPG7	protein_coding	Intergenic	.	.	Alu	0.416667
14	89554926	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.157895
14	89554927	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.105263
14	89554984	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.181818
14	89554992	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.142857
14	89584810	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.0606061
14	89584821	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.0588235
14	89584850	A->G	-	ENSG00000053254	FOXN3	protein_coding	Intergenic	.	.	Alu	0.0740741
16	89735984	A->G	-	ENSG00000158805	ZNF276	protein_coding	Intergenic	.	.	Alu	0.3
16	89736383	A->G	-	ENSG00000158805	ZNF276	protein_coding	Intergenic	.	.	Alu	0.384615
16	89786001	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.666667
16	89786121	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.3
16	89786157	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.2
16	89789568	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.166667
16	89790862	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.9
16	89790865	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.666667
16	89790968	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.875
16	89790974	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	1
16	89790978	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.6
16	89803719	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.538462
16	89803720	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.307692
16	89803733	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.133333
16	89803750	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.117647
16	89803865	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.625
16	89803870	A->G	-	ENSG00000187741	FANCA	protein_coding	Intergenic	.	.	Alu	0.368421
6	89816807	A->G	-	ENSG00000112159	MDN1	protein_coding	Intergenic	.	.	Alu	0.3
15	89846539	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.272727
15	89859482	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.181818
15	89859483	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.2
15	89859570	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.181818
15	89859667	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.133333
15	89859668	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.133333
16	89876808	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.2
16	89880539	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.181818
15	89884724	A->G	-	ENSG00000157823	AP3S2	protein_coding	Intergenic	.	.	Alu	0.4
16	89886307	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.2
16	89886615	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.611111
16	89886619	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.647059
16	89886683	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.333333
16	89886707	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.307692
16	89886790	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.32
16	89886857	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.4
16	89886858	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.625
16	89886865	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.125
16	89909324	A->G	+	ENSG00000141002	TCF25	protein_coding	Intergenic	.	.	Alu	0.0833333
16	89916692	A->G	+	ENSG00000258839	MC1R	protein_coding	Intergenic	.	.	Alu	0.166667
15	90034186	A->G	+	ENSG00000140548	ZNF710	protein_coding	Intergenic	.	.	Alu	0.3
6	90141292	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.307692
6	90141309	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.166667
6	90141318	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.214286
6	90141337	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.166667
6	90141345	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.153846
6	90141427	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.2
6	90141448	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.111111
6	90141460	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.25
6	90243017	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.333333
6	90243018	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.285714
6	90243044	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.153846
6	90247382	A->G	-	ENSG00000112182	BACH2	protein_coding	Intergenic	.	.	Alu	0.181818
14	90265816	A->G	+	ENSG00000100764	PSMC1	protein_coding	Intergenic	.	.	Alu	0.142857
15	90534973	A->G	+	ENSG00000140577	CRTC3	protein_coding	Intergenic	.	.	Alu	0.736842
15	90534974	A->G	+	ENSG00000140577	CRTC3	protein_coding	Intergenic	.	.	Alu	0.736842
15	90534984	A->G	+	ENSG00000140577	CRTC3	protein_coding	Intergenic	.	.	Alu	0.777778
7	90612528	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.272727
7	90612543	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.25
7	90612595	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.727273
7	90612596	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.272727
7	90612625	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.181818
7	90612651	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.611111
7	90612652	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.5
7	90612661	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.25
7	90612692	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.266667
7	90612693	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.125
7	90612722	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.428571
7	90626764	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.25
7	90626778	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.2
7	90697807	A->G	+	ENSG00000058091	CDK14	protein_coding	Intergenic	.	.	Alu	0.3
14	90737838	A->G	-	ENSG00000165914	TTC7B	protein_coding	Intergenic	.	.	Alu	0.947368
1	90928018	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.166667
1	90928049	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.583333
1	90928050	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.416667
4	90932641	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.6
4	90932642	A->G	+	ENSG00000184305	CCSER1	protein_coding	Intergenic	.	.	Alu	0.9
15	90985359	A->G	-	ENSG00000198901	PRC1	protein_coding	Intergenic	.	.	Alu	0.117647
15	90985369	A->G	-	ENSG00000198901	PRC1	protein_coding	Intergenic	.	.	Alu	0.142857
15	90985371	A->G	-	ENSG00000198901	PRC1	protein_coding	Intergenic	.	.	Alu	0.230769
1	91010359	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.0571429
1	91010376	A->G	-	ENSG00000122482	ZNF644	protein_coding	Intergenic	.	.	Alu	0.0769231
14	91056956	A->G	-	ENSG00000100784	RPS6KA5	protein_coding	Intergenic	.	.	Alu	0.166667
14	91501637	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.6
14	91501816	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.238095
14	91501829	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.166667
14	91501837	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.666667
14	91501843	A->G	-	ENSG00000100796	PPP4R3A	protein_coding	Intergenic	.	.	Alu	0.0909091
7	91956184	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.529412
7	91956189	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.272727
10	91973906	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.583333
10	91998006	A->G	+	ENSG00000095564	BTAF1	protein_coding	Intergenic	.	.	Alu	0.103448
14	92066748	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.2
14	92070718	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.111111
14	92088197	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.25
14	92088207	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.3125
14	92089145	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.105263
7	92091333	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.454545
7	92091465	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.2
7	92091466	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.545455
7	92091492	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.529412
7	92091507	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.470588
7	92091518	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.230769
7	92091527	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.583333
7	92091528	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.666667
7	92091551	A->G	+	ENSG00000127914	AKAP9	protein_coding	Intergenic	.	.	Alu	0.105263
14	92091824	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.666667
14	92091832	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.0833333
14	92091846	A->G	-	ENSG00000066427	ATXN3	protein_coding	Intergenic	.	.	Alu	0.736842
7	92220955	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.333333
7	92220960	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.714286
7	92220961	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.785714
7	92220983	A->G	-	ENSG00000001631	KRIT1	protein_coding	Intergenic	.	.	Alu	0.153846
1	92292526	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.333333
1	92292549	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	0.363636
1	92292899	A->G	-	ENSG00000174842	GLMN	protein_coding	Intergenic	.	.	Alu	1
10	92300271	A->G	+	ENSG00000198060	5-Mar	protein_coding	Intergenic	.	.	Alu	0.133333
9	92387153	A->G	+	ENSG00000106809	OGN	protein_coding	Intergenic	.	.	Alu	0.166667
9	92525306	A->G	+	ENSG00000106823	ECM2	protein_coding	Intergenic	.	.	Alu	0.166667
9	92587214	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.153846
9	92587215	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.384615
9	92587220	A->G	+	ENSG00000188312	CENPP	protein_coding	Intergenic	.	.	Alu	0.384615
10	92671150	A->G	-	.	.	.	Intergenic	.	.	Alu	0.15
10	92671213	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
10	92671305	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	92711633	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.0645161
7	92711660	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.885714
7	92711675	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.133333
7	92711736	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.2
7	92711745	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.181818
7	92711761	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.235294
7	92711763	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.105263
7	92711764	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.578947
7	92711771	A->G	-	ENSG00000105810	CDK6	protein_coding	Intergenic	.	.	Alu	0.235294
15	92889185	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.107143
15	92889208	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0689655
15	92889234	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.21875
15	92889243	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0588235
15	92889272	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0638298
15	92889276	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0408163
15	92889277	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.142857
15	92889281	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.276596
15	92889329	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0526316
15	92889345	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0508475
15	92889355	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.121212
15	92889365	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0833333
15	92889387	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.031746
15	92889397	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0392157
15	92889408	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.166667
15	92889425	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.177778
15	92889426	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.152174
15	92908972	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.111111
15	92908998	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0909091
15	92909039	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0625
15	92909040	A->G	+	ENSG00000279765	AC013394.1	protein_coding	Intergenic	.	.	Alu	0.0909091
7	92931887	A->G	+	.	.	.	Intergenic	.	.	Alu	0.3
7	92931888	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
1	93086444	A->G	+	ENSG00000143033	MTF2	protein_coding	Intergenic	.	.	Alu	0.166667
15	93315216	A->G	-	ENSG00000257060	AC091078.1	lincRNA	Intergenic	.	.	Alu	0.153846
1	93334068	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.133333
1	93334074	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intergenic	.	.	Alu	0.1875
12	93421313	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.2
12	93421334	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.3
12	93433044	A->G	-	ENSG00000177889	UBE2N	protein_coding	Intergenic	.	.	Alu	0.833333
11	93690340	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	1
11	93690377	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	1
11	93720148	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.2
11	93720211	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720218	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720226	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93720296	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.2
11	93720358	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.2
11	93720366	A->G	+	ENSG00000166004	CEP295	protein_coding	Intergenic	.	.	Alu	0.166667
11	93767608	A->G	-	ENSG00000166012	TAF1D	protein_coding	Intergenic	.	.	Alu	0.9
5	94013315	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.3
5	94013342	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
5	94013356	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.222222
5	94013371	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.571429
5	94013381	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.769231
5	94013396	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.818182
5	94050344	A->G	-	ENSG00000113391	FAM172A	protein_coding	Intergenic	.	.	Alu	0.166667
12	94189470	A->G	+	ENSG00000136040	PLXNC1	protein_coding	Intergenic	.	.	Alu	0.5
9	94378408	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.857143
9	94378446	A->G	+	ENSG00000148110	MFSD14B	protein_coding	Intergenic	.	.	Alu	0.923077
15	94430627	A->G	+	ENSG00000140563	MCTP2	protein_coding	Intergenic	.	.	Alu	0.0740741
15	94430628	A->G	+	ENSG00000140563	MCTP2	protein_coding	Intergenic	.	.	Alu	0.0769231
11	94465481	A->G	-	ENSG00000020922	MRE11	protein_coding	Intergenic	.	.	Alu	0.111111
10	94578099	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.181818
10	94578153	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.238095
10	94578154	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.285714
10	94578159	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.1
10	94578175	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.105263
10	94578179	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.263158
10	94578220	A->G	+	ENSG00000244332	AL138759.1	sense_overlapping	Intergenic	.	.	Alu	0.105263
5	94684618	A->G	+	ENSG00000133302	SLF1	protein_coding	Intergenic	.	.	Alu	0.125
8	94860473	A->G	+	ENSG00000164941	INTS8	protein_coding	Intergenic	.	.	Alu	0.230769
12	95048762	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.2
12	95057268	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0952381
12	95057282	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.125
12	95057287	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.214286
12	95057324	A->G	-	ENSG00000120798	NR2C1	protein_coding	Intergenic	.	.	Alu	0.0689655
13	95108761	A->G	-	ENSG00000125257	ABCC4	protein_coding	Intergenic	.	.	Alu	0.818182
13	95108771	A->G	-	ENSG00000125257	ABCC4	protein_coding	Intergenic	.	.	Alu	0.916667
11	95218724	A->G	-	ENSG00000149212	SESN3	protein_coding	Intergenic	.	.	Alu	0.176471
11	95218850	A->G	-	ENSG00000149212	SESN3	protein_coding	Intergenic	.	.	Alu	0.2
12	95239732	A->G	+	ENSG00000028203	VEZT	protein_coding	Intergenic	.	.	Alu	0.2
12	95289296	A->G	+	ENSG00000028203	VEZT	protein_coding	Intergenic	.	.	Alu	0.181818
12	95289323	A->G	+	ENSG00000028203	VEZT	protein_coding	Intergenic	.	.	Alu	0.2
12	95476252	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.545455
12	95476287	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.285714
12	95476291	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.285714
12	95476292	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.357143
12	95476469	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.3125
12	95476499	A->G	+	ENSG00000111142	METAP2	protein_coding	Intergenic	.	.	Alu	0.1875
1	95570164	A->G	-	ENSG00000228971	AL356479.1	lincRNA	Intergenic	.	.	Alu	0.785714
11	95824190	A->G	+	ENSG00000166037	CEP57	protein_coding	Intergenic	.	.	Alu	0.0555556
12	96201544	A->G	+	ENSG00000111145	ELK3	protein_coding	Intergenic	.	.	Alu	0.428571
2	96280642	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.25
2	96280646	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.272727
2	96280968	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.153846
2	96281065	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.0689655
2	96281067	A->G	-	ENSG00000144028	SNRNP200	protein_coding	Intergenic	.	.	Alu	0.103448
12	96327640	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.214286
12	96327645	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.357143
12	96375816	A->G	-	ENSG00000059758	CDK17	protein_coding	Intergenic	.	.	Alu	0.2
9	96415635	A->G	-	ENSG00000165244	ZNF367	protein_coding	Intergenic	.	.	Alu	0.0789474
10	96572698	A->G	-	ENSG00000077147	TM9SF3	protein_coding	Intergenic	.	.	Alu	0.0588235
10	96705680	A->G	-	ENSG00000155629	PIK3AP1	protein_coding	Intergenic	.	.	Alu	0.133333
10	96705685	A->G	-	ENSG00000155629	PIK3AP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	96725361	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	1
1	96725377	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.5
1	96725816	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.5
1	96725824	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0652174
1	96725825	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.666667
1	96725873	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0882353
1	96725888	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.6
1	96725896	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.205882
1	96725897	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.117647
1	96725898	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
1	96725909	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.121212
1	96725913	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.138889
1	96725921	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0645161
1	96725922	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0666667
1	96725928	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.206897
1	96725954	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.257143
1	96725960	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.193548
1	96725964	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0882353
1	96725992	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0909091
1	96725995	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.15625
1	96725996	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0606061
1	96726019	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	1
1	96726020	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	1
1	96726027	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0526316
1	96726032	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.2
1	96726785	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.25
1	96743103	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.166667
1	96796274	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.105263
1	96797955	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0377358
1	96797982	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0666667
1	96797989	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0652174
1	96797996	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.0454545
1	96798219	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.6
1	96798220	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.733333
1	96798228	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.166667
1	96798285	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.3
1	96798286	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.6
1	96798358	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.533333
1	96798361	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.375
1	96798388	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.466667
1	96801675	A->G	+	ENSG00000117569	PTBP2	protein_coding	Intergenic	.	.	Alu	0.153846
10	96865688	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.153846
10	96865689	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.153846
10	96865712	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.230769
10	96865753	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.153846
10	96865763	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.153846
10	96865771	A->G	+	ENSG00000196233	LCOR	protein_coding	Intergenic	.	.	Alu	0.153846
10	97393142	A->G	-	ENSG00000052749	RRP12	protein_coding	Intergenic	.	.	Alu	1
X	97438027	A->G	+	ENSG00000147202	DIAPH2	protein_coding	Intergenic	.	.	Alu	0.583333
X	97464274	A->G	+	ENSG00000147202	DIAPH2	protein_coding	Intergenic	.	.	Alu	0.4
10	97485302	A->G	-	ENSG00000155229	MMS19	protein_coding	Intergenic	.	.	Alu	0.166667
8	97647442	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.25
8	97667723	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.25
8	97667730	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.166667
8	97667790	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.142857
8	97667810	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.133333
8	97677397	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.125
8	97677411	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.0952381
8	97711369	A->G	+	ENSG00000147649	MTDH	protein_coding	Intergenic	.	.	Alu	0.133333
8	97779866	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.1875
8	97779876	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.142857
8	97779930	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.235294
8	97779931	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.176471
8	97779976	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.181818
8	97779996	A->G	+	ENSG00000104341	LAPTM4B	protein_coding	Intergenic	.	.	Alu	0.2
7	97923022	A->G	-	ENSG00000284707	AC079781.5	processed_transcript	Intergenic	.	.	Alu	0.5
7	97923023	A->G	-	ENSG00000284707	AC079781.5	processed_transcript	Intergenic	.	.	Alu	0.5
8	98043329	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.0921053
8	98043339	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.0396825
8	98043342	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.0940171
8	98043353	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.139241
8	98043405	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.416667
8	98043407	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.214953
8	98043683	A->G	-	ENSG00000156482	RPL30	protein_coding	Intergenic	.	.	Alu	0.5
7	98115371	A->G	+	ENSG00000164715	LMTK2	protein_coding	Intergenic	.	.	Alu	0.538462
4	98302994	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.2
4	98312867	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.6
4	98312954	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.545455
4	98312975	A->G	+	ENSG00000138698	RAP1GDS1	protein_coding	Intergenic	.	.	Alu	0.785714
2	98448146	A->G	+	ENSG00000040933	INPP4A	protein_coding	Intergenic	.	.	Alu	0.3
2	98448209	A->G	+	ENSG00000040933	INPP4A	protein_coding	Intergenic	.	.	Alu	0.3
12	98518023	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.181818
12	98526704	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.333333
12	98526749	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.818182
12	98526771	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.133333
12	98526772	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.2
12	98526811	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.133333
12	98527288	A->G	+	ENSG00000120802	TMPO	protein_coding	Intergenic	.	.	Alu	0.3
13	98570005	A->G	-	ENSG00000102572	STK24	protein_coding	Intergenic	.	.	Alu	0.857143
13	98570015	A->G	-	ENSG00000102572	STK24	protein_coding	Intergenic	.	.	Alu	0.923077
12	98653536	A->G	+	ENSG00000120868	APAF1	protein_coding	Intergenic	.	.	Alu	0.8
12	98653537	A->G	+	ENSG00000120868	APAF1	protein_coding	Intergenic	.	.	Alu	0.3
8	98669059	A->G	-	ENSG00000104375	STK3	protein_coding	Intergenic	.	.	Alu	0.2
5	98861650	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.181818
5	98883934	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.181818
5	98918115	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.333333
5	98918130	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.285714
5	98918186	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.666667
5	98918190	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.176471
5	98918202	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	1
5	98918222	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.181818
5	98918242	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.0952381
5	98918293	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.294118
5	98918294	A->G	-	ENSG00000153922	CHD1	protein_coding	Intergenic	.	.	Alu	0.166667
7	98959789	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.166667
7	98959792	A->G	+	ENSG00000196367	TRRAP	protein_coding	Intergenic	.	.	Alu	0.272727
7	99077435	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.25
7	99077444	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.166667
7	99077471	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.583333
7	99077497	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.4375
7	99077504	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.352941
7	99077512	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.125
7	99077522	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.142857
7	99077535	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.2
8	99087998	A->G	+	ENSG00000132549	VPS13B	protein_coding	Intergenic	.	.	Alu	0.846154
8	99088019	A->G	+	ENSG00000132549	VPS13B	protein_coding	Intergenic	.	.	Alu	0.916667
8	99088031	A->G	+	ENSG00000132549	VPS13B	protein_coding	Intergenic	.	.	Alu	0.846154
8	99088037	A->G	+	ENSG00000132549	VPS13B	protein_coding	Intergenic	.	.	Alu	0.846154
7	99140487	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.210526
7	99140491	A->G	-	ENSG00000198742	SMURF1	protein_coding	Intergenic	.	.	Alu	0.176471
13	99202018	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.2
13	99318763	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.416667
13	99318767	A->G	+	ENSG00000134882	UBAC2	protein_coding	Intergenic	.	.	Alu	0.25
7	99490112	A->G	-	ENSG00000160908	ZNF394	protein_coding	Intergenic	.	.	Alu	0.133333
2	99643197	A->G	-	ENSG00000144218	AFF3	protein_coding	Intergenic	.	.	Alu	0.3
15	99670594	A->G	+	ENSG00000068305	MEF2A	protein_coding	Intergenic	.	.	Alu	0.107143
15	99670595	A->G	+	ENSG00000068305	MEF2A	protein_coding	Intergenic	.	.	Alu	0.107143
3	99832761	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.9
3	99832765	A->G	+	ENSG00000184220	CMSS1	protein_coding	Intergenic	.	.	Alu	0.4
4	99933416	A->G	-	ENSG00000164031	DNAJB14	protein_coding	Intergenic	.	.	Alu	0.181818
1	100003201	A->G	+	ENSG00000117620	SLC35A3	protein_coding	Intergenic	.	.	Alu	0.6
1	100003265	A->G	+	ENSG00000117620	SLC35A3	protein_coding	Intergenic	.	.	Alu	0.363636
7	100076952	A->G	-	ENSG00000166526	ZNF3	protein_coding	Intergenic	.	.	Alu	1
7	100076988	A->G	-	ENSG00000166526	ZNF3	protein_coding	Intergenic	.	.	Alu	1
12	100135332	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0909091
12	100135340	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.235294
12	100135366	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.230769
12	100135472	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.2
12	100136839	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.357143
12	100136894	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.166667
12	100136909	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.631579
12	100136918	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0740741
12	100136949	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.117647
12	100136976	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.24
12	100136987	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0869565
12	100136989	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.217391
12	100136990	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.173913
12	100136993	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0909091
12	100137012	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0645161
12	100137014	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.483871
12	100137018	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.166667
12	100137048	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.0625
12	100137083	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.08
12	100137086	A->G	-	ENSG00000111647	UHRF1BP1L	protein_coding	Intergenic	.	.	Alu	0.192308
7	100184605	A->G	-	ENSG00000066923	STAG3	protein_coding	Intergenic	.	.	Alu	0.6
7	100184606	A->G	-	ENSG00000066923	STAG3	protein_coding	Intergenic	.	.	Alu	0.4
7	100229088	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.333333
7	100229108	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.2
7	100238167	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.25
7	100238168	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.333333
10	100251547	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.2
10	100251584	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.3
10	100251676	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.230769
7	100254145	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	1
7	100254155	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.3
7	100254181	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.153846
7	100254223	A->G	-	ENSG00000239521	CASTOR3	protein_coding	Intergenic	.	.	Alu	0.4
10	100257330	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.166667
10	100257361	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.153846
10	100257369	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.6
10	100257411	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.5
10	100257428	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.272727
10	100257476	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.15
10	100257477	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.1
10	100257478	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.0952381
10	100257479	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.571429
10	100257482	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.904762
10	100257488	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.105263
10	100257493	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.25
10	100257498	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.352941
10	100257526	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.416667
10	100257571	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.2
10	100265699	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.125
10	100265725	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.166667
10	100266464	A->G	-	ENSG00000095485	CWF19L1	protein_coding	Intergenic	.	.	Alu	0.166667
7	100278583	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	100278624	A->G	-	.	.	.	Intergenic	.	.	Alu	0.666667
7	100278625	A->G	-	.	.	.	Intergenic	.	.	Alu	0.125
1	100283824	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.176471
7	100284354	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	100286264	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.125
1	100286303	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.111111
1	100286307	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.181818
1	100286343	A->G	+	ENSG00000137996	RTCA	protein_coding	Intergenic	.	.	Alu	0.111111
3	100288051	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.181818
3	100288098	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.25
3	100288102	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.25
3	100288106	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.214286
3	100288124	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.5
3	100288186	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.4
3	100288191	A->G	+	ENSG00000036054	TBC1D23	protein_coding	Intergenic	.	.	Alu	0.181818
7	100296536	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
7	100296546	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
7	100296582	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
14	100302427	A->G	-	ENSG00000197119	SLC25A29	protein_coding	Intergenic	.	.	Alu	0.166667
12	100321929	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.7
12	100322913	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.2
12	100322921	A->G	+	ENSG00000136021	SCYL2	protein_coding	Intergenic	.	.	Alu	0.181818
7	100362744	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.333333
7	100363047	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.2
7	100363065	A->G	+	ENSG00000121716	PILRB	protein_coding	Intergenic	.	.	Alu	0.0833333
10	100627310	A->G	+	.	.	.	Intergenic	.	.	Alu	0.9
2	101274883	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0540541
2	101274898	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.128205
2	101274924	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.122449
2	101274925	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0851064
2	101275013	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0645161
2	101275045	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0465116
2	101275062	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0517241
2	101275066	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.140351
2	101275076	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.0338983
2	101275090	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.04
2	101275256	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.105263
15	101284533	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.111111
15	101284563	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.666667
2	101288389	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.133333
15	101290919	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.105263
15	101290924	A->G	-	ENSG00000131876	SNRPA1	protein_coding	Intergenic	.	.	Alu	0.105263
2	101305044	A->G	-	ENSG00000163162	RNF149	protein_coding	Intergenic	.	.	Alu	0.2
10	101382050	A->G	-	ENSG00000166167	BTRC	protein_coding	Intergenic	.	.	Alu	0.3
10	101549659	A->G	+	ENSG00000166167	BTRC	protein_coding	Intergenic	.	.	Alu	0.916667
3	101691309	A->G	+	.	.	.	Intergenic	.	.	Alu	0.454545
10	101790311	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0666667
10	101790349	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.15625
10	101790365	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	1
10	101790369	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.666667
10	101790397	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0697674
10	101790410	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.5
10	101790411	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0434783
10	101790437	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.339286
10	101790440	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0517241
10	101790445	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.0535714
10	101790470	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.194444
10	101790471	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.294118
10	101790480	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.272727
10	101790490	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.111111
10	101790495	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.125
10	101790508	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.166667
10	101790544	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.285714
10	101790549	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.45
10	101790550	A->G	-	ENSG00000198408	OGA	protein_coding	Intergenic	.	.	Alu	0.473684
12	101811686	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.2
12	101812878	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.117647
12	101812902	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.157895
12	101812903	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	1
12	101817346	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.25
12	101817351	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.142857
12	101817360	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101817370	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.133333
12	101817379	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.5
12	101818445	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101818480	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
12	101818506	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101818515	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.2
12	101818516	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.133333
12	101824684	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.142857
12	101824718	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.416667
12	101824719	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.25
12	101824727	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.461538
12	101827040	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.1
12	101827059	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.115385
12	101827093	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.105263
12	101827103	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.461538
12	101827115	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.214286
12	101827119	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.384615
12	101827123	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.272727
12	101827157	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
12	101827190	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.153846
12	101827317	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.2
12	101827438	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.125
12	101827451	A->G	-	ENSG00000111670	GNPTAB	protein_coding	Intergenic	.	.	Alu	0.166667
7	101833287	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0697674
7	101833408	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.06
7	101836578	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.1
7	101847867	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.2
7	101847937	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0952381
7	101847938	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.0952381
7	101855799	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.153846
7	101855941	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.142857
7	101856031	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.333333
7	101856100	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.315789
7	101969285	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.363636
14	102022455	A->G	+	ENSG00000197102	DYNC1H1	protein_coding	Intergenic	.	.	Alu	0.636364
14	102022456	A->G	+	ENSG00000197102	DYNC1H1	protein_coding	Intergenic	.	.	Alu	0.454545
14	102046150	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.111111
7	102117330	A->G	+	ENSG00000257923	CUX1	protein_coding	Intergenic	.	.	Alu	0.230769
14	102163481	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.5
14	102163485	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	1
14	102163507	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	0.142857
14	102163508	A->G	+	ENSG00000140153	WDR20	protein_coding	Intergenic	.	.	Alu	1
4	102197211	A->G	+	.	.	.	Intergenic	.	.	Alu	1
4	102338220	A->G	-	ENSG00000138821	SLC39A8	protein_coding	Intergenic	.	.	Alu	0.117647
8	102344371	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.266667
8	102344374	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.133333
8	102344386	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.333333
11	102351500	A->G	+	ENSG00000110330	BIRC2	protein_coding	Intergenic	.	.	Alu	0.125
8	102358899	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.555556
8	102358907	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.222222
8	102358913	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.315789
8	102358933	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.133333
8	102358939	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.375
8	102358971	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.333333
8	102358972	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.166667
7	102384297	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.1875
7	102384316	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.133333
8	102385659	A->G	-	ENSG00000104517	UBR5	protein_coding	Intergenic	.	.	Alu	0.2
7	102385719	A->G	+	ENSG00000128563	PRKRIP1	protein_coding	Intergenic	.	.	Alu	0.133333
11	102425732	A->G	-	ENSG00000152558	TMEM123	protein_coding	Intergenic	.	.	Alu	0.1
13	102486028	A->G	+	.	.	.	Intergenic	.	.	Alu	1
13	102486029	A->G	+	.	.	.	Intergenic	.	.	Alu	1
13	102486034	A->G	+	.	.	.	Intergenic	.	.	Alu	1
13	102486054	A->G	+	.	.	.	Intergenic	.	.	Alu	1
4	102559741	A->G	+	ENSG00000109320	NFKB1	protein_coding	Intergenic	.	.	Alu	0.133333
4	102559818	A->G	+	ENSG00000109320	NFKB1	protein_coding	Intergenic	.	.	Alu	0.642857
4	102559832	A->G	+	ENSG00000109320	NFKB1	protein_coding	Intergenic	.	.	Alu	0.375
4	102559883	A->G	+	ENSG00000109320	NFKB1	protein_coding	Intergenic	.	.	Alu	0.307692
4	102559887	A->G	+	ENSG00000109320	NFKB1	protein_coding	Intergenic	.	.	Alu	0.25
14	102604990	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.133333
14	102605007	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.133333
14	102605013	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.111111
14	102605020	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.222222
14	102605055	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.125
14	102612779	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.7
14	102612807	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.833333
14	102612836	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.545455
14	102612878	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.214286
14	102651433	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.266667
14	102651474	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.0740741
14	102669060	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.105263
14	102669090	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.153846
14	102669095	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.2
14	102705921	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.181818
14	102705958	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.181818
14	102705981	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.125
14	102705991	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.761905
14	102706005	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	1
14	102706063	A->G	+	ENSG00000089902	RCOR1	protein_coding	Intergenic	.	.	Alu	0.357143
4	102758635	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.111111
4	102758640	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.210526
4	102758671	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.153846
4	102758707	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.153846
4	102758714	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.125
4	102758720	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.235294
4	102758725	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.277778
4	102759169	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.181818
4	102759196	A->G	-	ENSG00000109323	MANBA	protein_coding	Intergenic	.	.	Alu	0.142857
4	102814400	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0454545
4	102814413	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0555556
4	102814582	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intergenic	.	.	Alu	0.0625
14	102846717	A->G	+	ENSG00000131323	TRAF3	protein_coding	Intergenic	.	.	Alu	0.117647
14	102846736	A->G	+	ENSG00000131323	TRAF3	protein_coding	Intergenic	.	.	Alu	0.5
2	102869126	A->G	+	ENSG00000170417	TMEM182	protein_coding	Intergenic	.	.	Alu	0.357143
11	103087091	A->G	-	ENSG00000137692	DCUN1D5	protein_coding	Intergenic	.	.	Alu	0.2
10	103108896	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.157895
10	103108927	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103108956	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.5
10	103108964	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.230769
10	103108996	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103108997	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.166667
10	103109051	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.3125
10	103109077	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.2
10	103109120	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103116659	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.375
10	103116667	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.233333
10	103116793	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.238095
10	103116808	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.166667
10	103118433	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.222222
10	103118489	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0952381
10	103118494	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	1
10	103118495	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.157895
10	103118521	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.272727
10	103118533	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103118573	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.1
10	103118600	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.157895
10	103118604	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.315789
10	103143528	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.5625
10	103143533	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.757576
10	103143534	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.69697
10	103143542	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.208333
10	103143581	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.243243
10	103143593	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.416667
10	103165836	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.285714
10	103165849	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103165863	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103166749	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	103166755	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.333333
10	103166760	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.130435
10	103166785	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0606061
10	103166809	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0952381
10	103166817	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103166852	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.214286
10	103166895	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0833333
10	103167076	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0540541
10	103167113	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	103167153	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0909091
10	103167185	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0555556
10	103167186	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0833333
10	103167194	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0571429
10	103167196	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.147059
10	103167200	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.133333
10	103167291	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103170651	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0645161
10	103170655	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0689655
10	103170691	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.125
10	103170728	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.142857
10	103170730	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.285714
10	103170731	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.285714
10	103170800	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.357143
10	103178978	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.153846
10	103179104	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.428571
10	103179122	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.105263
10	103179128	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.111111
10	103179156	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.411765
10	103179219	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.117647
10	103189765	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.25
10	103189766	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.5
10	103189793	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.0869565
10	103189807	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.08
10	103189813	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.136364
10	103189833	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.181818
10	103189836	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.125
10	103189838	A->G	-	ENSG00000076685	NT5C2	protein_coding	Intergenic	.	.	Alu	0.125
14	103389993	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.153846
14	103414987	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.916667
14	103414999	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.846154
14	103415031	A->G	+	ENSG00000075413	MARK3	protein_coding	Intergenic	.	.	Alu	0.923077
14	103649520	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.307692
14	103682183	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.333333
14	103682191	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.4
14	103682192	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.1875
14	103682193	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.8125
14	103682223	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.285714
14	103682249	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.8
14	103682255	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.733333
14	103682263	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.176471
14	103682319	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.115942
14	103682325	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.396825
14	103682358	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.0740741
14	103682633	A->G	+	ENSG00000126214	KLC1	protein_coding	Intergenic	.	.	Alu	0.416667
12	103936540	A->G	+	ENSG00000166598	HSP90B1	protein_coding	Intergenic	.	.	Alu	0.3
12	104460402	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0978261
12	104460454	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0428571
12	104460457	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.112676
12	104460517	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	1
12	104460533	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.238095
12	104460544	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.136364
12	104460578	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.142857
12	104460614	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.285714
12	104460621	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.2
12	104461974	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.028169
12	104461978	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0285714
12	104462052	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0234375
12	104462082	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.024
12	104480300	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.111111
12	104480390	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.166667
12	104480427	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0909091
12	104480497	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0909091
12	104480566	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0350877
12	104543873	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.2
12	104543915	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.117647
12	104543919	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.111111
12	104544049	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.193548
12	104544073	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0689655
12	104556920	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.2
12	104556968	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.2
12	104685985	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.2
12	104686181	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0952381
12	104696537	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.5
12	104696557	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0526316
12	104696568	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.0540541
12	104696606	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.117647
12	104696607	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.157895
12	104755566	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.333333
12	104755633	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.133333
12	104755639	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.153846
12	104755671	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.133333
12	104755698	A->G	+	ENSG00000171310	CHST11	protein_coding	Intergenic	.	.	Alu	0.333333
9	104896828	A->G	-	ENSG00000165029	ABCA1	protein_coding	Intergenic	.	.	Alu	0.157895
7	105031884	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.2
7	105031892	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.181818
7	105031919	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.125
7	105031947	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.333333
7	105031961	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.1875
7	105032005	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.210526
7	105032188	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.181818
7	105032189	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.2
7	105032323	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.7
7	105032341	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	1
7	105066967	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.105263
7	105070440	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.277778
7	105070453	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.15
7	105070514	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0909091
7	105070566	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.133333
7	105073276	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0952381
7	105073290	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.173913
7	105073325	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.128205
7	105073341	A->G	+	ENSG00000005483	KMT2E	protein_coding	Intergenic	.	.	Alu	0.0638298
14	105267364	A->G	-	ENSG00000185024	BRF1	protein_coding	Intergenic	.	.	Alu	0.363636
14	105267432	A->G	-	ENSG00000185024	BRF1	protein_coding	Intergenic	.	.	Alu	0.4
14	105267515	A->G	-	ENSG00000185024	BRF1	protein_coding	Intergenic	.	.	Alu	0.230769
7	105273508	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.4
7	105273523	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.181818
7	105273563	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	1
7	105340486	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.384615
7	105343790	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.3
7	105348169	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.166667
7	105348177	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.272727
7	105348298	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.142857
7	105350585	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.0833333
7	105350663	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.230769
7	105366455	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.2
7	105366481	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.2
7	105373500	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.2
7	105373648	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.333333
7	105383342	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.117647
7	105385313	A->G	-	ENSG00000135250	SRPK2	protein_coding	Intergenic	.	.	Alu	0.181818
7	105542208	A->G	+	ENSG00000135249	RINT1	protein_coding	Intergenic	.	.	Alu	0.428571
7	105542224	A->G	+	ENSG00000135249	RINT1	protein_coding	Intergenic	.	.	Alu	0.363636
9	105711355	A->G	+	ENSG00000095209	TMEM38B	protein_coding	Intergenic	.	.	Alu	0.3
3	105838161	A->G	-	ENSG00000114423	CBLB	protein_coding	Intergenic	.	.	Alu	0.0666667
7	107171845	A->G	+	ENSG00000105856	HBP1	protein_coding	Intergenic	.	.	Alu	0.384615
3	107544906	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.125
3	107565973	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.181818
3	107566018	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.181818
3	107566054	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.461538
3	107566055	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.333333
3	107566096	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.2
3	107592281	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.181818
3	107592336	A->G	+	ENSG00000114439	BBX	protein_coding	Intergenic	.	.	Alu	0.307692
6	107923628	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.363636
6	107930212	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.135135
6	107938389	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.2
6	107938749	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.153846
6	107938760	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.133333
6	107938784	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.4
6	107938805	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.125
6	107938806	A->G	-	ENSG00000025796	SEC63	protein_coding	Intergenic	.	.	Alu	0.176471
11	108017225	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.153846
11	108017226	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.153846
11	108017287	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.0833333
11	108017310	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.166667
11	108017315	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.115385
11	108017340	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.105263
11	108017373	A->G	+	ENSG00000166266	CUL5	protein_coding	Intergenic	.	.	Alu	0.1
6	108600359	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.636364
6	108600360	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.363636
6	108600381	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.2
6	108600426	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.277778
6	108600427	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.777778
6	108600479	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	0.666667
6	108600496	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	1
6	108600497	A->G	+	ENSG00000118689	FOXO3	protein_coding	Intergenic	.	.	Alu	1
2	108635330	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.153846
2	108635331	A->G	+	ENSG00000169756	LIMS1	protein_coding	Intergenic	.	.	Alu	0.153846
12	108651939	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.272727
12	108651999	A->G	-	ENSG00000110880	CORO1C	protein_coding	Intergenic	.	.	Alu	0.125
1	108942981	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.461538
1	108942983	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.285714
1	108942984	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.846154
1	108942988	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.153846
1	108942992	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.153846
1	108943025	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.166667
1	108943048	A->G	-	ENSG00000121940	CLCC1	protein_coding	Intergenic	.	.	Alu	0.230769
6	108994814	A->G	-	ENSG00000080546	SESN1	protein_coding	Intergenic	.	.	Alu	0.125
9	109058129	A->G	-	ENSG00000106771	TMEM245	protein_coding	Intergenic	.	.	Alu	0.133333
1	109405500	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.153846
1	109422611	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.857143
1	109422617	A->G	-	ENSG00000143106	PSMA5	protein_coding	Intergenic	.	.	Alu	0.846154
4	109478165	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.181818
4	109484573	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.25
4	109484587	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.1
4	109484622	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.3
4	109484675	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.235294
4	109484701	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.125
4	109484705	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.133333
4	109484763	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.230769
4	109484807	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.133333
4	109500465	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.642857
4	109500469	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.787879
4	109500472	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.454545
4	109500523	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.111111
4	109500691	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.210526
4	109500700	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.190476
4	109500728	A->G	+	ENSG00000138802	SEC24B	protein_coding	Intergenic	.	.	Alu	0.0952381
4	109612985	A->G	+	ENSG00000005059	MCUB	protein_coding	Intergenic	.	.	Alu	0.4
5	109799729	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.384615
5	109799742	A->G	+	ENSG00000112893	MAN2A1	protein_coding	Intergenic	.	.	Alu	0.166667
12	109976042	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.176471
12	109976043	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.266667
12	109976059	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.230769
12	109976681	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.666667
12	109976726	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.08
12	109976767	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.181818
12	109976768	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.181818
12	109978192	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.105263
12	109978355	A->G	-	ENSG00000139437	TCHP	protein_coding	Intergenic	.	.	Alu	0.384615
9	110053330	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.153846
9	110053339	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.6
9	110053340	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.285714
9	110053385	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.1875
9	110053407	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.142857
9	110053408	A->G	+	ENSG00000157654	PALM2-AKAP2	protein_coding	Intergenic	.	.	Alu	0.357143
12	110312058	A->G	+	ENSG00000174437	ATP2A2	protein_coding	Intergenic	.	.	Alu	0.230769
1	110352549	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.181818
1	110352550	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.2
1	110352572	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.294118
1	110353195	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.5
1	110353249	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.5
1	110353261	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.2
12	110360264	A->G	-	.	.	.	Intergenic	.	.	Alu	1
1	110362436	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.272727
1	110362522	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.2
1	110362528	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.230769
1	110362530	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.166667
1	110362536	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.153846
1	110362573	A->G	+	ENSG00000224699	LAMTOR5-AS1	processed_transcript	Intergenic	.	.	Alu	0.454545
1	110367553	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.230769
1	110367565	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.153846
1	110367575	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.545455
1	110367589	A->G	+	ENSG00000168679	SLC16A4	protein_coding	Intergenic	.	.	Alu	0.166667
12	110448139	A->G	-	ENSG00000111229	ARPC3	protein_coding	Intergenic	.	.	Alu	0.4
12	110497349	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.2
12	110497355	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.545455
12	110497490	A->G	-	ENSG00000111237	VPS29	protein_coding	Intergenic	.	.	Alu	0.142857
1	110890446	A->G	+	ENSG00000143119	CD53	protein_coding	Intergenic	.	.	Alu	0.136364
13	110897198	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0909091
13	110897279	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0526316
13	110897361	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.08
13	110897383	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.529412
13	110898648	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.171429
13	110898665	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.175439
13	110898670	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.04
13	110898675	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0833333
13	110898681	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.0338983
13	110898687	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.203125
13	110898697	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.333333
13	110898894	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.125
13	110899024	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.533333
13	110899029	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.75
13	110899030	A->G	-	ENSG00000229152	ANKRD10-IT1	sense_intronic	Intergenic	.	.	Alu	0.208333
1	110900502	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
1	110900567	A->G	+	.	.	.	Intergenic	.	.	Alu	0.1
10	110924812	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.142857
10	110924911	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.25
10	110924912	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.375
10	110924918	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.105263
10	110924921	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.157895
10	110924977	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.363636
10	110925046	A->G	+	ENSG00000108061	SHOC2	protein_coding	Intergenic	.	.	Alu	0.181818
6	111318180	A->G	-	ENSG00000009413	REV3L	protein_coding	Intergenic	.	.	Alu	0.461538
6	111318212	A->G	-	ENSG00000009413	REV3L	protein_coding	Intergenic	.	.	Alu	0.461538
6	111318216	A->G	-	ENSG00000009413	REV3L	protein_coding	Intergenic	.	.	Alu	0.461538
6	111318226	A->G	-	ENSG00000009413	REV3L	protein_coding	Intergenic	.	.	Alu	0.714286
12	111427112	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.2
12	111427131	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.2
12	111427152	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.307692
12	111427153	A->G	+	ENSG00000111252	SH2B3	protein_coding	Intergenic	.	.	Alu	0.25
9	111477138	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.181818
9	111477144	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.181818
9	111480366	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.153846
9	111480380	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.166667
9	111480400	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.307692
9	111480422	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.153846
9	111480466	A->G	-	ENSG00000136813	ECPAS	protein_coding	Intergenic	.	.	Alu	0.166667
6	111489520	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.105263
6	111520753	A->G	+	ENSG00000231889	TRAF3IP2-AS1	antisense	Intergenic	.	.	Alu	0.272727
12	111582833	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.769231
12	111586257	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.125
12	111586279	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.1
12	111586483	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.142857
12	111586497	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.454545
12	111586514	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.166667
12	111586524	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.0952381
12	111586653	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.166667
12	111586658	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.181818
12	111586659	A->G	-	ENSG00000204842	ATXN2	protein_coding	Intergenic	.	.	Alu	0.5
1	111632726	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	111632727	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.166667
1	111632853	A->G	+	ENSG00000116473	RAP1A	protein_coding	Intergenic	.	.	Alu	0.153846
11	111854225	A->G	-	ENSG00000086848	ALG9	protein_coding	Intergenic	.	.	Alu	0.2
11	111854229	A->G	-	ENSG00000086848	ALG9	protein_coding	Intergenic	.	.	Alu	0.2
11	111854235	A->G	-	ENSG00000086848	ALG9	protein_coding	Intergenic	.	.	Alu	0.363636
12	112221671	A->G	-	ENSG00000173064	HECTD4	protein_coding	Intergenic	.	.	Alu	0.166667
12	112221687	A->G	-	ENSG00000173064	HECTD4	protein_coding	Intergenic	.	.	Alu	0.5
12	112221704	A->G	-	ENSG00000173064	HECTD4	protein_coding	Intergenic	.	.	Alu	0.166667
9	112302726	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.133333
9	112302727	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.125
9	112302768	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.111111
9	112302772	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.1875
9	112302791	A->G	-	ENSG00000119314	PTBP3	protein_coding	Intergenic	.	.	Alu	0.125
12	112432644	A->G	+	ENSG00000179295	PTPN11	protein_coding	Intergenic	.	.	Alu	0.181818
1	112623733	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.2
1	112623738	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.5
1	112623859	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.5
1	112663571	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.363636
1	112663601	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.181818
1	112663631	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.714286
1	112663970	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.772727
1	112663996	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.111111
1	112664023	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	1
1	112664048	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.277778
1	112664050	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.875
1	112664056	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.266667
1	112664111	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.214286
1	112664117	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.130435
1	112664121	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.173913
1	112664152	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.210526
1	112664157	A->G	+	ENSG00000116489	CAPZA1	protein_coding	Intergenic	.	.	Alu	0.222222
9	113447012	A->G	+	ENSG00000138835	RGS3	protein_coding	Intergenic	.	.	Alu	0.3
3	113666390	A->G	-	ENSG00000176542	USF3	protein_coding	Intergenic	.	.	Alu	0.363636
1	113716410	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	113716411	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	113729040	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.0681818
3	113729059	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.195122
3	113729082	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.0588235
3	113729083	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.0625
3	113729199	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.133333
3	113729617	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.2
3	113729752	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.166667
3	113729753	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.166667
3	113729822	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.142857
3	113729830	A->G	-	ENSG00000121579	NAA50	protein_coding	Intergenic	.	.	Alu	0.153846
1	113733028	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.181818
1	113733098	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.181818
1	113733104	A->G	-	ENSG00000116793	PHTF1	protein_coding	Intergenic	.	.	Alu	0.583333
2	113740626	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.142857
2	113753241	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.214286
2	113753275	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.166667
2	113753307	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.166667
2	113753316	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.16
2	113753343	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.210526
2	113753349	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.0952381
2	113753355	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.176471
2	113753359	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.25
2	113753390	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.117647
2	113753393	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.294118
2	113753414	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.2
2	113753419	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.125
2	113753443	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.428571
2	113753466	A->G	-	ENSG00000115084	SLC35F5	protein_coding	Intergenic	.	.	Alu	0.153846
2	113907709	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.181818
2	113907711	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.545455
2	113949116	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.166667
2	113949122	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.307692
2	113949123	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.230769
2	113949192	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.153846
2	113949227	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0952381
2	113949231	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0833333
2	113949258	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0769231
2	113949284	A->G	+	ENSG00000115091	ACTR3	protein_coding	Intergenic	.	.	Alu	0.0769231
1	114504290	A->G	-	ENSG00000197323	TRIM33	protein_coding	Intergenic	.	.	Alu	0.272727
X	114895743	A->G	-	ENSG00000147246	HTR2C	protein_coding	Intergenic	.	.	Alu	1
X	114895744	A->G	-	ENSG00000147246	HTR2C	protein_coding	Intergenic	.	.	Alu	1
X	114895776	A->G	-	ENSG00000147246	HTR2C	protein_coding	Intergenic	.	.	Alu	1
8	115524381	A->G	-	ENSG00000104447	TRPS1	protein_coding	Intergenic	.	.	Alu	0.1875
X	115956592	A->G	-	ENSG00000235244	DANT2	lincRNA	Intergenic	.	.	Alu	0.2
12	116146325	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.5
12	116146392	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.409091
12	116146393	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.3
12	116146401	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.15
12	116160654	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.133333
12	116165427	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.769231
12	116165428	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.56
12	116165436	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.285714
12	116165469	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.166667
12	116165471	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.470588
12	116165531	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.416667
12	116165551	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.384615
12	116165558	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.258065
12	116165603	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0645161
12	116170677	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.130435
12	116170725	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.230769
12	116181158	A->G	-	ENSG00000258337	AC130895.1	sense_intronic	Intergenic	.	.	Alu	0.357143
12	116206178	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.272727
12	116206219	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.133333
12	116206260	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.153846
12	116251389	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.111111
12	116251397	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.352941
12	116251432	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.3
12	116253845	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.166667
12	116253865	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.157895
12	116253897	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0833333
12	116253906	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.08
12	116253924	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.5
12	116253928	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.16
12	116253929	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.153846
12	116253931	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0769231
12	116253955	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.142857
12	116253956	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.272727
12	116253964	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.111111
12	116253965	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.107143
12	116253988	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.0869565
12	116253993	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.37037
12	116253998	A->G	-	ENSG00000123066	MED13L	protein_coding	Intergenic	.	.	Alu	0.125
7	116888703	A->G	+	ENSG00000198898	CAPZA2	protein_coding	Intergenic	.	.	Alu	0.12
11	116922946	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	116922950	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1
11	116922979	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.277778
11	116923002	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	116923028	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	116923045	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.129032
11	116923049	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0857143
11	116923070	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0540541
11	116923073	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.6
11	116923081	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.666667
11	116923085	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.219512
11	116923095	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0487805
11	116923098	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.666667
11	116923119	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.210526
11	116923129	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	116923143	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.210526
11	116923153	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1875
11	116923205	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.25
11	116933153	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	116940370	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	116945098	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	116949556	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.153846
11	116995024	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	116995033	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.375
11	117012885	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	117012990	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.130435
11	117014010	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.125
11	117014072	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117014077	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.363636
11	117014082	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.208333
11	117014117	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	117063648	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	117063697	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117063706	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.5
11	117063707	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.214286
11	117063733	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117063763	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.470588
11	117063770	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	117063823	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	117063838	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.352941
11	117063839	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117065911	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.4
11	117066100	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0666667
11	117066130	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0454545
11	117066132	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.116279
11	117066197	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0909091
11	117066206	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.222222
11	117066207	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117066229	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.35
11	117070351	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.075
11	117070356	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.1
11	117070369	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	117070401	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	117070404	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0689655
11	117070405	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0689655
11	117070413	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.230769
11	117070414	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117070415	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.769231
11	117070456	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0540541
11	117070568	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.275862
11	117070571	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0740741
11	117070578	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.5
11	117070579	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0666667
11	117070779	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0540541
11	117070780	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0465116
11	117070813	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0645161
11	117070849	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0571429
11	117070864	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.12
11	117070874	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0645161
11	117070878	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.142857
11	117070890	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.346154
11	117070891	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.12
11	117070913	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.666667
11	117070957	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.272727
11	117070958	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.25
11	117071775	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.111111
11	117071875	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.181818
11	117071898	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.166667
11	117075724	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0952381
11	117075748	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0833333
11	117075749	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.04
11	117075785	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0465116
11	117075941	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	117075986	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.117647
11	117076009	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.08
11	117076013	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117076052	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.115385
11	117076053	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.12
11	117076082	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.178571
11	117076121	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.105263
11	117076128	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117085128	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0416667
11	117085129	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.208333
11	117085130	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.0416667
11	117085169	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.16
11	117085183	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.230769
11	117085184	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.2
11	117085185	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.461538
11	117085264	A->G	-	ENSG00000160584	SIK3	protein_coding	Intergenic	.	.	Alu	0.5
12	117182432	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.181818
12	117182700	A->G	-	ENSG00000135108	FBXO21	protein_coding	Intergenic	.	.	Alu	0.2
12	118193105	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.153846
12	118193114	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.272727
12	118194814	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.545455
12	118194847	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.454545
12	118219822	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118230584	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.2
12	118269444	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.25
12	118269463	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.3
12	118269531	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.666667
12	118269535	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.764706
12	118269539	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.705882
12	118269540	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.705882
12	118294476	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1875
12	118294480	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0740741
12	118309584	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0869565
12	118309605	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.105263
12	118309627	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.294118
12	118309654	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.5
12	118309780	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1
12	118309789	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.15
12	118309797	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.111111
12	118310029	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	118310030	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.133333
12	118310189	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	118310201	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	118315059	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0952381
12	118331892	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.181818
12	118332037	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.2
12	118332041	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.4
12	118339350	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0444444
12	118348571	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0392157
12	118348579	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0350877
12	118348589	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.04
12	118348739	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.1
12	118349002	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0769231
12	118349007	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0740741
12	118349015	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.318182
12	118349020	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.333333
12	118349030	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0833333
12	118349108	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.333333
12	118349110	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.354839
12	118351909	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.2
12	118351937	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.169492
12	118351941	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0701754
12	118351942	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0338983
12	118351946	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0526316
12	118352046	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0392157
12	118352047	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0588235
12	118352056	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.5
12	118352067	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0816327
12	118352075	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0338983
12	118352077	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0833333
12	118352145	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0625
12	118352287	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	1
12	118356421	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.20339
12	118356422	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.4
12	118356432	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.5
12	118356437	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.4
12	118356438	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0547945
12	118356445	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0655738
12	118356464	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.038961
12	118356482	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0533333
12	118356503	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0746269
12	118356518	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.125
12	118356549	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0588235
12	118356573	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0540541
12	118356840	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.466667
12	118356900	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.272727
12	118356922	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.25
12	118361523	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0526316
12	118361525	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.166667
12	118361554	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.0833333
12	118361595	A->G	-	ENSG00000135090	TAOK3	protein_coding	Intergenic	.	.	Alu	0.15
11	118367195	A->G	+	ENSG00000110344	UBE4A	protein_coding	Intergenic	.	.	Alu	0.3
11	118446120	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.235294
11	118446124	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.176471
11	118446202	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.5
11	118446222	A->G	+	ENSG00000118058	KMT2A	protein_coding	Intergenic	.	.	Alu	0.181818
X	118557587	A->G	+	ENSG00000147251	DOCK11	protein_coding	Intergenic	.	.	Alu	1
X	118557608	A->G	+	ENSG00000147251	DOCK11	protein_coding	Intergenic	.	.	Alu	1
4	118612900	A->G	+	ENSG00000260404	AC110079.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
4	118612919	A->G	+	ENSG00000260404	AC110079.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
4	118612931	A->G	+	ENSG00000260404	AC110079.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.181818
11	118774641	A->G	-	ENSG00000110367	DDX6	protein_coding	Intergenic	.	.	Alu	0.3
10	119062894	A->G	-	ENSG00000107581	EIF3A	protein_coding	Intergenic	.	.	Alu	0.2
11	119253945	A->G	+	ENSG00000110395	CBL	protein_coding	Intergenic	.	.	Alu	0.2
10	119588576	A->G	-	ENSG00000151923	TIAL1	protein_coding	Intergenic	.	.	Alu	0.133333
X	119644935	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.454545
X	119659962	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.3
X	119684593	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.214286
X	119684628	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.214286
X	119684670	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.363636
X	119687389	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.318182
X	119687521	A->G	-	ENSG00000125354	6-Sep	protein_coding	Intergenic	.	.	Alu	0.166667
8	119792153	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.111111
8	119792349	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.166667
X	119827948	A->G	-	ENSG00000125351	UPF3B	protein_coding	Intergenic	.	.	Alu	0.2
8	119830031	A->G	-	ENSG00000064313	TAF2	protein_coding	Intergenic	.	.	Alu	0.166667
8	119843952	A->G	-	ENSG00000136982	DSCC1	protein_coding	Intergenic	.	.	Alu	1
8	119843955	A->G	-	ENSG00000136982	DSCC1	protein_coding	Intergenic	.	.	Alu	1
8	119843956	A->G	-	ENSG00000136982	DSCC1	protein_coding	Intergenic	.	.	Alu	1
X	119926335	A->G	-	ENSG00000101882	NKAP	protein_coding	Intergenic	.	.	Alu	0.2
12	120379952	A->G	-	.	.	.	Intergenic	.	.	Alu	0.727273
12	120544334	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.181818
12	120544437	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.15
12	120544442	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.117647
12	120544455	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.357143
12	120544480	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.133333
12	120544507	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.142857
12	120556285	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.105263
12	120556347	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0571429
12	120556410	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.37037
12	120556451	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.384615
12	120556898	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0952381
12	120556969	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.217391
12	120556997	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0833333
12	120557013	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.166667
12	120557023	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.105263
12	120557033	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0952381
12	120568002	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.153846
12	120568024	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.0769231
12	120568033	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.478261
12	120568086	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.111111
12	120568094	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.133333
12	120568111	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.2
12	120568124	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.166667
12	120568225	A->G	+	ENSG00000022840	RNF10	protein_coding	Intergenic	.	.	Alu	0.105263
9	120775100	A->G	-	ENSG00000119402	FBXW2	protein_coding	Intergenic	.	.	Alu	0.4
9	120775184	A->G	-	ENSG00000119402	FBXW2	protein_coding	Intergenic	.	.	Alu	0.833333
9	120775276	A->G	-	ENSG00000119402	FBXW2	protein_coding	Intergenic	.	.	Alu	0.3
9	120775281	A->G	-	ENSG00000119402	FBXW2	protein_coding	Intergenic	.	.	Alu	0.333333
12	120808152	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.0952381
12	120808160	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.526316
12	120808162	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.368421
12	120808242	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.2
12	120808256	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.666667
12	120808257	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	1
12	120808260	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.125
12	120808292	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.1875
12	120808294	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.3125
12	120808318	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.176471
12	120808348	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.466667
12	120808355	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.333333
9	120833827	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.769231
9	120833847	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.5
9	120833852	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.466667
9	120834181	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.2
9	120839853	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.307692
9	120839859	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.5
9	120839871	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.214286
9	120840597	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.157895
9	120840748	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.555556
9	120840752	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.611111
9	120840776	A->G	-	ENSG00000226752	CUTALP	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.166667
12	120863720	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.321429
12	120863734	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.416667
12	120863964	A->G	-	ENSG00000157837	SPPL3	protein_coding	Intergenic	.	.	Alu	0.125
9	121082823	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.2
9	121082891	A->G	+	ENSG00000119397	CNTRL	protein_coding	Intergenic	.	.	Alu	0.166667
12	121321443	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.3
12	121321493	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.2
12	121321503	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.133333
12	121321561	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.3
12	121335238	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.153846
12	121335262	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.375
12	121335263	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.125
12	121335369	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.952381
12	121335398	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.954545
12	121335403	A->G	-	ENSG00000089053	ANAPC5	protein_coding	Intergenic	.	.	Alu	0.916667
12	121424530	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.272727
12	121424531	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.363636
12	121424590	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.142857
12	121424631	A->G	+	ENSG00000170633	RNF34	protein_coding	Intergenic	.	.	Alu	0.2
3	121507932	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.2
3	121507959	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.25
3	121507975	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.833333
3	121507982	A->G	-	ENSG00000051341	POLQ	protein_coding	Intergenic	.	.	Alu	0.3
12	122026288	A->G	+	ENSG00000110987	BCL7A	protein_coding	Intergenic	.	.	Alu	0.125
12	122034474	A->G	+	ENSG00000110987	BCL7A	protein_coding	Intergenic	.	.	Alu	0.5
12	122049561	A->G	+	ENSG00000110987	BCL7A	protein_coding	Intergenic	.	.	Alu	1
12	122089091	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.0555556
12	122108108	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.363636
12	122108115	A->G	+	ENSG00000175727	MLXIP	protein_coding	Intergenic	.	.	Alu	0.272727
12	122412201	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.142857
12	122412246	A->G	-	ENSG00000130779	CLIP1	protein_coding	Intergenic	.	.	Alu	0.363636
12	122507296	A->G	-	ENSG00000111011	RSRC2	protein_coding	Intergenic	.	.	Alu	0.8
11	122729760	A->G	+	ENSG00000154127	UBASH3B	protein_coding	Intergenic	.	.	Alu	0.666667
11	122729876	A->G	+	ENSG00000154127	UBASH3B	protein_coding	Intergenic	.	.	Alu	0.142857
5	122792503	A->G	+	ENSG00000205302	SNX2	protein_coding	Intergenic	.	.	Alu	0.733333
9	122899231	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.1875
9	122901652	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0714286
9	122901687	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.0833333
9	122901689	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.12
9	122901756	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.15
9	122901785	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.227273
9	122901792	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.111111
9	122901831	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.153846
9	122901876	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.142857
9	122901957	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.272727
9	122902068	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.133333
9	122902094	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.214286
9	122902110	A->G	-	ENSG00000056586	RC3H2	protein_coding	Intergenic	.	.	Alu	0.153846
10	123001043	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.2
10	123001072	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.470588
10	123001082	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.117647
10	123001138	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.133333
10	123001144	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.25
10	123001190	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.2
10	123001211	A->G	-	ENSG00000095574	IKZF5	protein_coding	Intergenic	.	.	Alu	0.2
8	123032921	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.105263
8	123032923	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.105263
8	123032924	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.368421
8	123032926	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.105263
8	123032942	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.52381
8	123032961	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.136364
8	123033000	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.411765
8	123033095	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.153846
8	123033138	A->G	-	ENSG00000136986	DERL1	protein_coding	Intergenic	.	.	Alu	0.272727
9	123248290	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.181818
9	123248364	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.153846
9	123248365	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.416667
9	123248379	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.461538
9	123248405	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.272727
9	123251052	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.142857
9	123251078	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.2
9	123256115	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.2
9	123256156	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.214286
9	123256162	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.4375
9	123256217	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.333333
9	123256243	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.15
9	123256246	A->G	-	ENSG00000165209	STRBP	protein_coding	Intergenic	.	.	Alu	0.277778
12	123323390	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.294118
8	123344443	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.28125
8	123344460	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.384615
8	123344484	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.35
12	123349130	A->G	-	ENSG00000139697	SBNO1	protein_coding	Intergenic	.	.	Alu	0.818182
8	123350817	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0666667
8	123350822	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0833333
8	123350863	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.0909091
8	123350958	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.307692
8	123358941	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.130435
8	123373013	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.352941
8	123379847	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intergenic	.	.	Alu	0.3
12	123421940	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	1
12	123421941	A->G	-	ENSG00000150977	RILPL2	protein_coding	Intergenic	.	.	Alu	1
12	123468432	A->G	+	ENSG00000184209	SNRNP35	protein_coding	Intergenic	.	.	Alu	0.2
12	123468433	A->G	+	ENSG00000184209	SNRNP35	protein_coding	Intergenic	.	.	Alu	0.2
12	123469917	A->G	+	ENSG00000184209	SNRNP35	protein_coding	Intergenic	.	.	Alu	0.4
X	123692613	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.272727
X	123692666	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.142857
X	123692705	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.181818
X	123692715	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.133333
X	123692718	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.133333
X	123692720	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.3125
X	123692744	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.266667
X	123692769	A->G	-	ENSG00000125676	THOC2	protein_coding	Intergenic	.	.	Alu	0.25
X	123972769	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.2
X	123972799	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.117647
X	123972817	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.2
X	123972841	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.222222
X	123972842	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.277778
X	123972843	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.105263
X	123972938	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.0526316
X	123972942	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.342105
X	123972949	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.0588235
X	123972964	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.1
X	123972999	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.08
X	123973001	A->G	+	ENSG00000101972	STAG2	protein_coding	Intergenic	.	.	Alu	0.111111
10	124253514	A->G	+	.	.	.	Intergenic	.	.	Alu	1
8	124357998	A->G	-	ENSG00000164983	TMEM65	protein_coding	Intergenic	.	.	Alu	0.47619
8	124357999	A->G	-	ENSG00000164983	TMEM65	protein_coding	Intergenic	.	.	Alu	0.428571
9	124382003	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0666667
9	124382014	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.185185
9	124382015	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0714286
9	124382038	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.470588
9	124382041	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0909091
9	124382042	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0882353
9	124382067	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.111111
9	124382076	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.142857
9	124382125	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	1
9	124382126	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.105263
9	124382131	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.944444
9	124382141	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.375
9	124382268	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	1
9	124382280	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.4
9	124382310	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.272727
9	124382345	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0625
9	124382346	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.0882353
9	124382421	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.136364
9	124382424	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.521739
9	124382426	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.130435
9	124382432	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.210526
9	124382435	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.176471
9	124382445	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.6
9	124382480	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.333333
9	124382481	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.166667
9	124382483	A->G	-	ENSG00000136930	PSMB7	protein_coding	Intergenic	.	.	Alu	0.416667
10	124923474	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.571429
10	124923500	A->G	+	ENSG00000249456	AL731577.2	sense_overlapping	Intergenic	.	.	Alu	0.25
9	125106793	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.142857
9	125106801	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.133333
9	125106806	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.333333
9	125106837	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.230769
9	125130638	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.266667
9	125130980	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.666667
9	125138553	A->G	-	ENSG00000173611	SCAI	protein_coding	Intergenic	.	.	Alu	0.2
9	125157828	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.230769
9	125158772	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.153846
9	125158842	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.130435
9	125158843	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.130435
9	125158844	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.136364
9	125158845	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.238095
9	125158939	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.111111
9	125159141	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.3
9	125159163	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.181818
9	125159176	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.153846
9	125163940	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.235294
9	125163950	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.133333
9	125164319	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.0909091
9	125166606	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.210526
9	125166630	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.111111
9	125166650	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.1
9	125166671	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.15
9	125166806	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.166667
9	125166938	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.666667
9	125167015	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.2
9	125167016	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.5
9	125179686	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.166667
9	125179849	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.153846
9	125179859	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.133333
9	125187123	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.166667
9	125187150	A->G	-	ENSG00000119414	PPP6C	protein_coding	Intergenic	.	.	Alu	0.166667
9	125299872	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.666667
9	125299898	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.142857
9	125322867	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.5
9	125322919	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.25
9	125322932	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.533333
9	125322942	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.666667
9	125322965	A->G	+	ENSG00000165219	GAPVD1	protein_coding	Intergenic	.	.	Alu	0.2
3	125362732	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.230769
3	125362733	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.307692
3	125362734	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.230769
3	125362737	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.166667
3	125362841	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.272727
3	125363739	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.125
3	125363746	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.148148
3	125363747	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.115385
3	125363788	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.227273
3	125363814	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.615385
3	125363850	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.181818
3	125363857	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.866667
3	125363891	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.210526
3	125363895	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.190476
3	125363921	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.235294
3	125363922	A->G	-	ENSG00000163848	ZNF148	protein_coding	Intergenic	.	.	Alu	0.235294
3	125478217	A->G	-	ENSG00000114520	SNX4	protein_coding	Intergenic	.	.	Alu	0.3
3	125478302	A->G	-	ENSG00000114520	SNX4	protein_coding	Intergenic	.	.	Alu	0.454545
9	125793284	A->G	+	ENSG00000167081	PBX3	protein_coding	Intergenic	.	.	Alu	0.142857
9	125804853	A->G	+	ENSG00000167081	PBX3	protein_coding	Intergenic	.	.	Alu	0.133333
9	125834839	A->G	+	ENSG00000167081	PBX3	protein_coding	Intergenic	.	.	Alu	0.75
9	125834897	A->G	+	ENSG00000167081	PBX3	protein_coding	Intergenic	.	.	Alu	0.2
3	125907886	A->G	-	ENSG00000241278	ENPP7P4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.923077
3	125907895	A->G	-	ENSG00000241278	ENPP7P4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.923077
3	125907908	A->G	-	ENSG00000241278	ENPP7P4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.923077
3	125907922	A->G	-	ENSG00000241278	ENPP7P4	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	1
2	127334584	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.5
2	127334610	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.2
2	127334652	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.363636
2	127334662	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.166667
2	127334663	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.307692
2	127334846	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.166667
2	127334882	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.285714
2	127334909	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.538462
2	127349263	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.307692
2	127366906	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.0740741
2	127366943	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.166667
2	127366947	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.428571
2	127366968	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.15
2	127367008	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.416667
2	127367009	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.409091
2	127379030	A->G	-	ENSG00000169967	MAP3K2	protein_coding	Intergenic	.	.	Alu	0.0444444
9	127477668	A->G	+	ENSG00000148356	LRSAM1	protein_coding	Intergenic	.	.	Alu	1
2	127754495	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.1
9	127778477	A->G	+	ENSG00000095370	SH2D3C	protein_coding	Intergenic	.	.	Alu	0.153846
2	127783665	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.291667
2	127783694	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.15
2	127783697	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.111111
2	127783742	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.615385
2	127783743	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.153846
2	127783769	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.153846
2	127783825	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.166667
9	127791836	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
9	127791842	A->G	+	.	.	.	Intergenic	.	.	Alu	0.125
9	127791852	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
9	127791856	A->G	+	.	.	.	Intergenic	.	.	Alu	0.269231
9	127791880	A->G	+	.	.	.	Intergenic	.	.	Alu	0.178571
9	127791881	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
9	127791897	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
9	127791902	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
9	127791905	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
9	127791922	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0588235
9	127791940	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0731707
9	127791960	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0882353
9	127791963	A->G	+	.	.	.	Intergenic	.	.	Alu	0.358974
9	127791964	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
9	127791997	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0882353
9	127792043	A->G	+	.	.	.	Intergenic	.	.	Alu	0.217391
9	127792057	A->G	+	.	.	.	Intergenic	.	.	Alu	0.346154
9	127792066	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0833333
9	127792079	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
9	127792109	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
9	127792114	A->G	+	.	.	.	Intergenic	.	.	Alu	0.130435
9	127792116	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
9	127792211	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0666667
9	127792212	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
9	127792218	A->G	+	.	.	.	Intergenic	.	.	Alu	0.4
9	127792300	A->G	+	.	.	.	Intergenic	.	.	Alu	0.190476
9	127792303	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
9	127792321	A->G	+	.	.	.	Intergenic	.	.	Alu	0.117647
9	127792340	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0869565
9	127792392	A->G	+	.	.	.	Intergenic	.	.	Alu	0.173913
9	127792393	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
9	127792402	A->G	+	.	.	.	Intergenic	.	.	Alu	0.107143
9	127792405	A->G	+	.	.	.	Intergenic	.	.	Alu	0.321429
9	127792406	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0689655
9	127792418	A->G	+	.	.	.	Intergenic	.	.	Alu	0.08
9	127795012	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.266667
9	127795034	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.142857
9	127795154	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.15
9	127795155	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.285714
9	127795180	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.15
9	127795296	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0689655
9	127795356	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.111111
9	127795417	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.666667
9	127795481	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.176471
9	127795482	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.25
9	127795615	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.5
9	127795676	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.210526
9	127795690	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.0952381
2	127796554	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	1
2	127805120	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0666667
2	127805175	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0789474
2	127805210	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0769231
2	127805216	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.0540541
2	127805301	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.2
9	127805306	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.714286
9	127805324	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.833333
9	127805365	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	1
9	127805398	A->G	+	ENSG00000136877	FPGS	protein_coding	Intergenic	.	.	Alu	0.363636
2	127806304	A->G	-	ENSG00000136709	WDR33	protein_coding	Intergenic	.	.	Alu	0.08
9	127821515	A->G	+	ENSG00000106991	ENG	protein_coding	Intergenic	.	.	Alu	0.916667
9	127821929	A->G	+	ENSG00000106991	ENG	protein_coding	Intergenic	.	.	Alu	0.333333
9	127821935	A->G	+	ENSG00000106991	ENG	protein_coding	Intergenic	.	.	Alu	0.266667
9	127827898	A->G	+	ENSG00000106991	ENG	protein_coding	Intergenic	.	.	Alu	0.2
9	127906857	A->G	-	.	.	.	Intergenic	.	.	Alu	0.3
2	127979970	A->G	-	ENSG00000136715	SAP130	protein_coding	Intergenic	.	.	Alu	0.357143
4	128010892	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.5
4	128010893	A->G	+	ENSG00000164074	ABHD18	protein_coding	Intergenic	.	.	Alu	0.2
4	128063307	A->G	+	ENSG00000138709	LARP1B	protein_coding	Intergenic	.	.	Alu	0.166667
9	128469823	A->G	+	ENSG00000136811	ODF2	protein_coding	Intergenic	.	.	Alu	0.3
9	128469896	A->G	+	ENSG00000136811	ODF2	protein_coding	Intergenic	.	.	Alu	0.4
9	128469909	A->G	+	ENSG00000136811	ODF2	protein_coding	Intergenic	.	.	Alu	0.2
7	128486669	A->G	+	ENSG00000165055	METTL2B	protein_coding	Intergenic	.	.	Alu	1
7	128550775	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
7	128550923	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.117647
7	128550924	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.294118
7	128550965	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.235294
7	128550966	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.125
7	128550980	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.263158
7	128550997	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.166667
7	128551005	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.583333
7	128553310	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	128553311	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.310345
7	128553328	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.384615
7	128553551	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
7	128553642	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
7	128555458	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
7	128555690	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.2
7	128572380	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.25
7	128572391	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.5625
7	128572559	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.307692
7	128572560	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
7	128572571	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128572594	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.142857
7	128572621	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.08
7	128574530	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.153846
7	128574536	A->G	+	ENSG00000280828	AC090114.3	unprocessed_pseudogene	Intergenic	.	.	Alu	0.230769
7	128633707	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
7	128633817	A->G	+	.	.	.	Intergenic	.	.	Alu	0.235294
7	128633844	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
7	128633845	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
7	128655738	A->G	+	.	.	.	Intergenic	.	.	Alu	0.0714286
3	128729495	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.4
3	128729522	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.2
3	128729525	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.185185
3	128734152	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.153846
3	128734220	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.166667
3	128734228	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.142857
3	128734243	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.105263
3	128734304	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.181818
3	128734310	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0882353
3	128734311	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.142857
3	128734440	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0408163
3	128740614	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.153846
3	128740654	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.4375
3	128740694	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0571429
3	128740705	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0540541
3	128740816	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.571429
3	128740826	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.08
3	128740855	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.26087
3	128740856	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.26087
3	128740861	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.0909091
3	128740876	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.363636
3	128811592	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.8
3	128811593	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.3
3	128811685	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.3
3	128811728	A->G	+	ENSG00000075785	RAB7A	protein_coding	Intergenic	.	.	Alu	0.5
3	129208320	A->G	-	.	.	.	Intergenic	.	.	Alu	1
3	129262964	A->G	+	ENSG00000181789	COPG1	protein_coding	Intergenic	.	.	Alu	0.2
3	129262967	A->G	+	ENSG00000181789	COPG1	protein_coding	Intergenic	.	.	Alu	1
3	129262968	A->G	+	ENSG00000181789	COPG1	protein_coding	Intergenic	.	.	Alu	0.166667
3	129328405	A->G	+	.	.	.	Intergenic	.	.	Alu	1
3	129328420	A->G	+	.	.	.	Intergenic	.	.	Alu	1
9	129642800	A->G	-	.	.	.	Intergenic	.	.	Alu	1
9	129642805	A->G	-	.	.	.	Intergenic	.	.	Alu	0.538462
9	129642809	A->G	-	.	.	.	Intergenic	.	.	Alu	1
7	129843095	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.272727
7	129843104	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.153846
7	129843137	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.8125
7	129843163	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.222222
7	129843168	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.117647
7	129843178	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.117647
7	129843194	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.153846
7	129843202	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.153846
9	129844479	A->G	+	ENSG00000136878	USP20	protein_coding	Intergenic	.	.	Alu	0.214286
9	129844506	A->G	+	ENSG00000136878	USP20	protein_coding	Intergenic	.	.	Alu	0.142857
9	129844528	A->G	+	ENSG00000136878	USP20	protein_coding	Intergenic	.	.	Alu	0.272727
7	129864655	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.105263
7	129864690	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.0909091
7	129894550	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.142857
7	129894556	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.2
7	129894770	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.416667
7	129906236	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.24
7	129906273	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.384615
7	129906274	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.375
7	129906329	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.176471
7	129906342	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.235294
7	129906349	A->G	-	ENSG00000186591	UBE2H	protein_coding	Intergenic	.	.	Alu	0.307692
9	129913964	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	129914012	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.153846
9	129914016	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.363636
9	129914020	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	129914069	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.266667
9	129914074	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.285714
9	129914083	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.117647
9	129914098	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	129914102	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.125
9	129914151	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.666667
9	129921379	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.111111
9	129925849	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.666667
9	129925866	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.615385
9	129948427	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
8	129969111	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.133333
8	130001601	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.166667
8	130001605	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.166667
8	130001618	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.153846
8	130001621	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.272727
8	130001625	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.705882
8	130001634	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.117647
8	130001640	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.117647
8	130001657	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.722222
8	130001667	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.933333
8	130001687	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.181818
8	130001696	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.117647
8	130001746	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.636364
8	130001747	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.166667
8	130001752	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.5
8	130001753	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.5
8	130004364	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.166667
8	130004852	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.142857
8	130004864	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.136364
8	130004878	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.136364
8	130004899	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.0869565
8	130004904	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.190476
8	130004905	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.157895
8	130005039	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.416667
8	130005040	A->G	-	ENSG00000153310	FAM49B	protein_coding	Intergenic	.	.	Alu	0.333333
9	130014479	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.2
9	130017585	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	130017708	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.230769
9	130017718	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
9	130018052	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.6875
9	130018062	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.15
9	130018078	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0833333
9	130018081	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.590909
9	130018115	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.2
9	130029234	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.125
9	130029253	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.666667
9	130029317	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.454545
9	130031799	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.1875
9	130031800	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.125
9	130031852	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.363636
9	130031858	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.3
9	130031865	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.166667
9	130031867	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.230769
9	130031904	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.181818
9	130031932	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.153846
9	130031935	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.384615
9	130041000	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.0487805
9	130041112	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	1
9	130041126	A->G	-	ENSG00000187239	FNBP1	protein_coding	Intergenic	.	.	Alu	0.028169
2	130168672	A->G	-	ENSG00000136699	SMPD4	protein_coding	Intergenic	.	.	Alu	0.2
11	130285564	A->G	-	ENSG00000196323	ZBTB44	protein_coding	Intergenic	.	.	Alu	0.916667
11	130298342	A->G	-	ENSG00000196323	ZBTB44	protein_coding	Intergenic	.	.	Alu	0.4
11	130298343	A->G	-	ENSG00000196323	ZBTB44	protein_coding	Intergenic	.	.	Alu	0.4
9	130503349	A->G	+	.	.	.	Intergenic	.	.	Alu	1
9	130503351	A->G	+	.	.	.	Intergenic	.	.	Alu	1
9	130704966	A->G	+	.	.	.	Intergenic	.	.	Alu	0.466667
9	130705115	A->G	+	.	.	.	Intergenic	.	.	Alu	0.6
9	130705134	A->G	+	.	.	.	Intergenic	.	.	Alu	0.545455
9	130705267	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
9	130705268	A->G	+	.	.	.	Intergenic	.	.	Alu	0.25
9	130705284	A->G	+	.	.	.	Intergenic	.	.	Alu	0.214286
9	130705306	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
3	130873934	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.0571429
3	130936737	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.230769
3	131008307	A->G	+	ENSG00000017260	ATP2C1	protein_coding	Intergenic	.	.	Alu	0.2
7	131044505	A->G	-	ENSG00000231721	LINC-PINT	processed_transcript	Intergenic	.	.	Alu	0.181818
2	131084328	A->G	-	ENSG00000152102	FAM168B	protein_coding	Intergenic	.	.	Alu	0.2
2	131118654	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.2
2	131118678	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.214286
2	131118721	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.181818
2	131129270	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.153846
2	131129275	A->G	+	ENSG00000115762	PLEKHB2	protein_coding	Intergenic	.	.	Alu	0.142857
9	131192755	A->G	+	ENSG00000126883	NUP214	protein_coding	Intergenic	.	.	Alu	0.4
9	131192759	A->G	+	ENSG00000126883	NUP214	protein_coding	Intergenic	.	.	Alu	0.473684
9	131192837	A->G	+	ENSG00000126883	NUP214	protein_coding	Intergenic	.	.	Alu	1
5	131270244	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131276251	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.125
5	131276302	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131276308	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.2
5	131276338	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.176471
5	131276342	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.333333
5	131276374	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.117647
5	131291982	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131292033	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131292056	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	131292125	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.08
5	131292128	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0392157
5	131292159	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0576923
5	131292318	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0740741
5	131292358	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.117647
5	131292448	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.16
5	131292493	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0740741
5	131292644	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0526316
5	131292832	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0769231
5	131292837	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0434783
5	131294805	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131294806	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131295082	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.25
5	131295156	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0740741
5	131295172	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0606061
5	131295208	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131300662	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0833333
5	131300668	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0869565
5	131301746	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.533333
5	131319835	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0882353
5	131319864	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0363636
5	131319874	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0465116
5	131319894	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0638298
5	131319897	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0384615
5	131319898	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0714286
5	131319899	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.178571
5	131319901	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0377358
5	131319904	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.666667
5	131319930	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0930233
5	131319936	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.181818
5	131319940	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0652174
5	131319957	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.09375
5	131319960	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.125
5	131319983	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.375
5	131319986	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.075
5	131319992	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.292683
5	131320003	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.05
5	131320038	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131320203	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.307692
5	131320204	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.28
5	131320207	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0869565
5	131320209	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	131320271	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.1
5	131320272	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.121951
5	131320285	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0857143
5	131320376	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.1875
5	131320532	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.117647
5	131320535	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.125
5	131320595	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.230769
5	131320621	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.266667
5	131320622	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.466667
5	131339059	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0526316
5	131339060	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0508475
5	131339101	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.04
5	131339173	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0327869
5	131339193	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0327869
5	131339205	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0517241
5	131342160	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.142857
5	131342165	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.153846
5	131343605	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.173913
5	131343670	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.0689655
5	131368066	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.466667
5	131368074	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.111111
5	131368138	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.227273
5	131368142	A->G	+	ENSG00000158985	CDC42SE2	protein_coding	Intergenic	.	.	Alu	0.190476
9	131399099	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.153846
9	131399100	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.230769
9	131399146	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0833333
9	131399155	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.125
9	131399165	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0606061
9	131399169	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0857143
9	131399196	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0612245
9	131399322	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.6
9	131399325	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.105263
9	131399368	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.1
9	131399392	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.133333
9	131399402	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.166667
9	131399458	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.214286
9	131399499	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.142857
7	131418254	A->G	+	ENSG00000128585	MKLN1	protein_coding	Intergenic	.	.	Alu	0.166667
9	131424445	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.292683
9	131424454	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.05
9	131424500	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.129032
9	131424501	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131424559	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.272727
9	131424565	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.5
9	131424566	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.5
9	131424571	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.125
9	131424607	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.214286
9	131424625	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.571429
9	131424635	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.2
9	131424636	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.190476
9	131426083	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.136364
9	131426100	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.347826
9	131426128	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0363636
9	131426152	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.209677
9	131426157	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.435484
9	131426160	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.122807
9	131426161	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0535714
9	131426173	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0425532
9	131426182	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0465116
9	131426187	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.05
9	131426195	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0571429
9	131426207	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.121951
9	131426211	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.27907
9	131426217	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0666667
9	131426218	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0444444
9	131426223	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.047619
9	131426227	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.0512821
9	131426231	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.536585
9	131426258	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.15625
9	131426287	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.222222
9	131426288	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.444444
9	131426323	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.380952
9	131448423	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	1
9	131448583	A->G	+	ENSG00000130723	PRRC2B	protein_coding	Intergenic	.	.	Alu	0.375
2	131506714	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.181818
2	131506716	A->G	+	ENSG00000152117	AC073869.1	transcribed_processed_pseudogene	Intergenic	.	.	Alu	0.272727
5	131687182	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.181818
5	131687184	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.181818
5	131764342	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.3
5	131764400	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.181818
5	131764405	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.615385
5	131766165	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.352941
5	131766170	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.1875
5	131766179	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.133333
5	131766189	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.3
5	131775692	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.117647
5	131775729	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.230769
5	131775760	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.181818
5	131775765	A->G	-	ENSG00000273217	AC008695.1	protein_coding	Intergenic	.	.	Alu	0.733333
12	131899996	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.181818
12	131900006	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.15
12	131900019	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.133333
12	131900023	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.368421
12	131900037	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.111111
12	131900038	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.157895
12	131900042	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.277778
12	131900107	A->G	+	ENSG00000177169	ULK1	protein_coding	Intergenic	.	.	Alu	0.142857
10	131903311	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.6
10	131903313	A->G	+	ENSG00000175470	PPP2R2D	protein_coding	Intergenic	.	.	Alu	0.153846
9	132291275	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.153846
9	132291278	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.214286
9	132291305	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.666667
9	132292768	A->G	-	ENSG00000107290	SETX	protein_coding	Intergenic	.	.	Alu	0.3
12	132652366	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.266667
12	132652460	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.307692
12	132652523	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.166667
12	132656487	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.272727
12	132685965	A->G	-	ENSG00000177084	POLE	protein_coding	Intergenic	.	.	Alu	0.166667
12	132697032	A->G	+	ENSG00000176894	PXMP2	protein_coding	Intergenic	.	.	Alu	0.2
5	132917810	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.142857
5	132917823	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.3125
5	132917845	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.130435
5	132917850	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.28
5	132917851	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.227273
5	132917881	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0909091
5	132917903	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.181818
5	132917940	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.352941
5	132921536	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.181818
5	132921565	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.117647
5	132921585	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921600	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.153846
5	132921605	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921640	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921643	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.181818
5	132921644	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921645	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921646	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921649	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.333333
5	132921897	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.363636
5	132921905	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132921964	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.2
5	132926639	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.1875
5	132926683	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.037037
5	132926691	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.0576923
5	132951676	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.3
5	132951716	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.166667
5	132951721	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.181818
5	132951736	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.214286
5	132954583	A->G	-	ENSG00000072364	AFF4	protein_coding	Intergenic	.	.	Alu	0.181818
5	133078615	A->G	+	ENSG00000170606	HSPA4	protein_coding	Intergenic	.	.	Alu	0.181818
5	133085605	A->G	+	ENSG00000170606	HSPA4	protein_coding	Intergenic	.	.	Alu	0.105263
10	133294732	A->G	-	ENSG00000130640	TUBGCP2	protein_coding	Intergenic	.	.	Alu	0.2
3	133651417	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.5
3	133651427	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.25
3	133651439	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.25
3	133651462	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.181818
3	133651463	A->G	-	ENSG00000163781	TOPBP1	protein_coding	Intergenic	.	.	Alu	0.363636
7	133694146	A->G	+	ENSG00000131558	EXOC4	protein_coding	Intergenic	.	.	Alu	0.3
7	133694150	A->G	+	ENSG00000131558	EXOC4	protein_coding	Intergenic	.	.	Alu	0.636364
5	134218864	A->G	-	ENSG00000272772	AC104109.3	protein_coding	Intergenic	.	.	Alu	0.181818
5	134379526	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.142857
5	134379552	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.8
5	134379567	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.117647
5	134379590	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.833333
5	134379591	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.833333
5	134380015	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.181818
5	134382757	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.166667
5	134386065	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.241379
5	134386072	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.114286
5	134386102	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0769231
5	134386197	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.111111
5	134386248	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.136364
5	134386249	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.105263
5	134386307	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0833333
5	134386308	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0606061
5	134386375	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.125
5	134386401	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.142857
5	134386410	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.2
5	134386415	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.153846
5	134386420	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.142857
5	134386470	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.117647
5	134386471	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.105263
5	134386511	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.105263
5	134386512	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.447368
5	134386518	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.047619
5	134386538	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0882353
5	134386544	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0666667
5	134386577	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.0784314
5	134386611	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.126984
5	134386622	A->G	+	ENSG00000119048	UBE2B	protein_coding	Intergenic	.	.	Alu	0.122807
5	134399888	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.111111
5	134399892	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.111111
5	134399960	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.0769231
5	134399980	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.565217
5	134399990	A->G	+	ENSG00000248559	AC109454.2	antisense	Intergenic	.	.	Alu	0.590909
5	134883658	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.125
5	134883684	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.307692
5	134883703	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.2
5	134883717	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.142857
5	134883727	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.181818
5	134883768	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.75
5	134883856	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.25
5	134883909	A->G	+	ENSG00000113621	TXNDC15	protein_coding	Intergenic	.	.	Alu	0.0909091
5	134929318	A->G	+	ENSG00000132570	PCBD2	protein_coding	Intergenic	.	.	Alu	0.272727
5	134940942	A->G	+	ENSG00000132570	PCBD2	protein_coding	Intergenic	.	.	Alu	0.111111
7	135474144	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.133333
7	135474150	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.142857
7	135474162	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.181818
7	135474251	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.235294
7	135474423	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.333333
7	135479271	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.4
7	135479305	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.26087
7	135479317	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.666667
7	135479347	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.75
7	135479379	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.142857
7	135479388	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.181818
7	135479482	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.2
7	135504433	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.5
7	135504434	A->G	-	ENSG00000080802	CNOT4	protein_coding	Intergenic	.	.	Alu	0.5
2	135747159	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.153846
2	135747160	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.153846
2	135747227	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.380952
2	135747228	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.428571
2	135747233	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.263158
2	135747280	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	1
2	135747290	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.666667
2	135748707	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.111111
2	135748758	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.133333
2	135748774	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.176471
2	135748775	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.166667
2	135748796	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.1
2	135748801	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.166667
2	135748843	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.181818
2	135748844	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.521739
2	135748848	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.173913
2	135748916	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.2
2	135748921	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0714286
2	135748943	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.0833333
2	135749029	A->G	+	ENSG00000144224	UBXN4	protein_coding	Intergenic	.	.	Alu	0.25
9	135855958	A->G	+	ENSG00000130559	CAMSAP1	protein_coding	Intergenic	.	.	Alu	1
3	136159492	A->G	-	ENSG00000174579	MSL2	protein_coding	Intergenic	.	.	Alu	0.2
3	136159502	A->G	-	ENSG00000174579	MSL2	protein_coding	Intergenic	.	.	Alu	0.176471
3	136638154	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136657265	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136657267	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.363636
3	136657268	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136700531	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.133333
3	136700557	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.142857
3	136700949	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.117647
3	136708958	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.153846
3	136709282	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.166667
X	136724357	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.4
X	136724359	A->G	-	ENSG00000129675	ARHGEF6	protein_coding	Intergenic	.	.	Alu	0.3
3	136729701	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.142857
3	136729705	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.153846
3	136729774	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136729775	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.181818
3	136729782	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.117647
3	136729783	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.117647
3	136729798	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.153846
3	136730013	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.111111
3	136735241	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.4
3	136744752	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.15
3	136744773	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0833333
3	136744808	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	136744814	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.15
3	136744824	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.142857
3	136744869	A->G	-	ENSG00000118007	STAG1	protein_coding	Intergenic	.	.	Alu	0.2
3	136843401	A->G	+	ENSG00000168917	SLC35G2	protein_coding	Intergenic	.	.	Alu	0.2
3	136844746	A->G	+	ENSG00000168917	SLC35G2	protein_coding	Intergenic	.	.	Alu	0.461538
X	136871712	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.454545
X	136871742	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.25
X	136871784	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.428571
X	136871785	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.0952381
X	136871895	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.181818
X	136877210	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.230769
X	136877220	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.166667
X	136877250	A->G	-	ENSG00000147274	RBMX	protein_coding	Intergenic	.	.	Alu	0.153846
9	137208026	A->G	+	ENSG00000188566	NDOR1	protein_coding	Intergenic	.	.	Alu	0.181818
9	137208027	A->G	+	ENSG00000188566	NDOR1	protein_coding	Intergenic	.	.	Alu	0.727273
9	137208188	A->G	+	ENSG00000188566	NDOR1	protein_coding	Intergenic	.	.	Alu	0.153846
9	137622832	A->G	+	ENSG00000181090	EHMT1	protein_coding	Intergenic	.	.	Alu	0.153846
9	137622956	A->G	+	ENSG00000181090	EHMT1	protein_coding	Intergenic	.	.	Alu	0.25
9	137631757	A->G	+	ENSG00000181090	EHMT1	protein_coding	Intergenic	.	.	Alu	0.545455
5	137923183	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.4
5	137923243	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.5
5	137923245	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.583333
5	137923253	A->G	-	ENSG00000078795	PKD2L2	protein_coding	Intergenic	.	.	Alu	0.5
5	137979042	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.0714286
5	137979048	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.185185
5	137979075	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.142857
5	137979078	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.08
5	137979150	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.307692
5	137979151	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.153846
5	137979226	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.3
5	137980603	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.666667
5	137981019	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.15
5	137981027	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.277778
5	137981066	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.4
5	137999192	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.153846
5	137999237	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.7
5	138002419	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.818182
5	138002445	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.454545
5	138002488	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.214286
5	138002794	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.2
5	138002798	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.230769
5	138002804	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.571429
5	138030344	A->G	-	ENSG00000031003	FAM13B	protein_coding	Intergenic	.	.	Alu	0.2
3	138195089	A->G	+	ENSG00000114098	ARMC8	protein_coding	Intergenic	.	.	Alu	0.9
3	138195114	A->G	+	ENSG00000114098	ARMC8	protein_coding	Intergenic	.	.	Alu	0.9
3	138195120	A->G	+	ENSG00000114098	ARMC8	protein_coding	Intergenic	.	.	Alu	0.9
5	138196633	A->G	-	ENSG00000094880	CDC23	protein_coding	Intergenic	.	.	Alu	0.916667
5	138383938	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.2
5	138383940	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.2
5	138383941	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.363636
5	138384065	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.25
5	138384066	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.166667
5	138384072	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.25
5	138384793	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.2
5	138403667	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.272727
5	138403738	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.384615
5	138416428	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.181818
5	138416429	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.181818
5	138416442	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.307692
5	138416446	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.230769
5	138416474	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.272727
5	138416475	A->G	+	ENSG00000120733	KDM3B	protein_coding	Intergenic	.	.	Alu	0.454545
7	138476513	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.2
2	138505654	A->G	+	ENSG00000144228	SPOPL	protein_coding	Intergenic	.	.	Alu	0.214286
7	138509526	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.285714
7	138509543	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.153846
7	138509584	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.666667
7	138509593	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.666667
7	138509659	A->G	+	ENSG00000122779	TRIM24	protein_coding	Intergenic	.	.	Alu	0.210526
5	138524506	A->G	-	ENSG00000120705	ETF1	protein_coding	Intergenic	.	.	Alu	0.142857
2	138584601	A->G	+	.	.	.	Intergenic	.	.	Alu	1
2	138584617	A->G	+	.	.	.	Intergenic	.	.	Alu	1
2	138584637	A->G	+	.	.	.	Intergenic	.	.	Alu	0.272727
3	138644028	A->G	-	ENSG00000174715	PPIAP72	processed_pseudogene	Intergenic	.	.	Alu	1
6	138969488	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.133333
6	138984148	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.111111
6	138984212	A->G	-	ENSG00000135597	REPS1	protein_coding	Intergenic	.	.	Alu	0.2
4	139021224	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.2
4	139021254	A->G	+	ENSG00000151014	NOCT	protein_coding	Intergenic	.	.	Alu	0.25
7	139056501	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.2
7	139056623	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.2
7	139056625	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.5
7	139056626	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.3
7	139056634	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.8
7	139056657	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.4
7	139056679	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.285714
7	139056688	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.230769
7	139071151	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.25
7	139071189	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.181818
4	139088761	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0869565
4	139088824	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.133333
4	139088826	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.333333
4	139088827	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.2
4	139088896	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.153846
4	139088897	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.153846
4	139088923	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.181818
4	139088937	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.181818
4	139088999	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.5
7	139097701	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.214286
7	139097707	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	1
4	139102962	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.166667
4	139103006	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.153846
7	139103323	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.318182
7	139103324	A->G	-	ENSG00000105939	ZC3HAV1	protein_coding	Intergenic	.	.	Alu	0.0909091
4	139106840	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.133333
4	139106846	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.315789
4	139106881	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.3125
4	139106882	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.3125
4	139106949	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.294118
4	139106963	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139106992	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.222222
4	139106995	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.117647
4	139107018	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.166667
4	139107019	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.4
4	139114314	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.142857
4	139114403	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.1
4	139114412	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.1
4	139114447	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.428571
4	139114452	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.230769
4	139114457	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.1875
4	139114486	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.157895
4	139114487	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.210526
6	139143741	A->G	+	ENSG00000112406	HECA	protein_coding	Intergenic	.	.	Alu	0.1
4	139147720	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0384615
4	139148259	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0612245
4	139148365	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0909091
4	139148449	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.148148
4	139148450	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.0740741
6	139158615	A->G	+	ENSG00000112406	HECA	protein_coding	Intergenic	.	.	Alu	0.3
4	139170341	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.2
4	139170350	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.25
4	139170370	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.2
4	139170375	A->G	-	ENSG00000109381	ELF2	protein_coding	Intergenic	.	.	Alu	0.5
5	139304268	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.5
5	139304324	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.176471
5	139304325	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.411765
5	139304345	A->G	+	ENSG00000280987	MATR3	protein_coding	Intergenic	.	.	Alu	0.117647
5	139348126	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.2
5	139350054	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.2
5	139350484	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.142857
5	139350510	A->G	+	ENSG00000120727	PAIP2	protein_coding	Intergenic	.	.	Alu	0.230769
4	139365792	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.153846
4	139365812	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.434783
7	139368563	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.125
7	139368595	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.434783
7	139368658	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.3125
7	139368659	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.4
7	139368663	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.266667
7	139368683	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.142857
7	139378382	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.142857
7	139378383	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.214286
7	139378387	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.642857
7	139378409	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.166667
7	139378475	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.642857
7	139378480	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.285714
7	139378508	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.0769231
7	139378555	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.241379
3	139388658	A->G	-	ENSG00000184432	COPB2	protein_coding	Intergenic	.	.	Alu	0.357143
7	139396406	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.25
7	139396418	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.166667
7	139396427	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.272727
4	139400216	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.166667
4	139400829	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.181818
4	139400835	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.181818
4	139400956	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.125
4	139401023	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.0909091
4	139407361	A->G	+	ENSG00000164134	NAA15	protein_coding	Intergenic	.	.	Alu	0.142857
7	139419000	A->G	+	ENSG00000146963	LUC7L2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139568404	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.133333
5	139568405	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.117647
5	139568474	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.125
5	139568481	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.2
5	139568487	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.133333
5	139568527	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.125
5	139568537	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.166667
5	139568543	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.157895
5	139568601	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.5
5	139573047	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.214286
5	139573159	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.153846
5	139573161	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.230769
5	139573181	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.176471
5	139573208	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.111111
5	139573222	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.347826
5	139573243	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0769231
5	139585878	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.172414
5	139585882	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.15625
5	139585887	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0857143
5	139585918	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0606061
5	139587456	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.181818
5	139587562	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.133333
5	139590248	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.139535
5	139590249	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.428571
5	139590251	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0769231
5	139590254	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.121212
5	139590257	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0689655
5	139590282	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0625
5	139590288	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0606061
5	139590315	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.341463
5	139590341	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0526316
5	139590347	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0909091
5	139590356	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0645161
5	139590376	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.0833333
5	139590390	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.115385
5	139590392	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.173913
5	139590417	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.115385
5	139590422	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.115385
5	139601842	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.181818
5	139601855	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.133333
5	139601860	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.125
5	139603512	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.2
5	139603585	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.166667
5	139605329	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.631579
5	139608372	A->G	+	ENSG00000131508	UBE2D2	protein_coding	Intergenic	.	.	Alu	0.153846
5	140469390	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.121951
5	140469404	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.0789474
5	140469451	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.347826
5	140469452	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.12
5	140536194	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.166667
5	140536211	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.5
5	140536840	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.181818
5	140536858	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intergenic	.	.	Alu	0.2
5	140542438	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.2
5	140542439	A->G	+	ENSG00000213523	SRA1	protein_coding	Intergenic	.	.	Alu	0.2
7	140798704	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.210526
7	140798967	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.181818
7	140815171	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.363636
7	140815270	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.666667
7	140815340	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.111111
7	140815347	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.4
7	140815348	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.380952
7	140815417	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.238095
7	140815466	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.1
7	140815494	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.285714
7	140815510	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.25
7	140815522	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.25
7	140815554	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.4
7	140815598	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.2
7	140873256	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.428571
7	140897563	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.117647
7	140907373	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.181818
7	140913550	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.266667
7	140913551	A->G	-	ENSG00000157764	BRAF	protein_coding	Intergenic	.	.	Alu	0.266667
3	141889649	A->G	+	ENSG00000069849	ATP1B3	protein_coding	Intergenic	.	.	Alu	0.2
3	142019202	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	142044437	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.2
3	142052679	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.5
3	142090721	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.125
3	142090725	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.473684
3	142090731	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.0869565
3	142090732	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.0833333
3	142090762	A->G	-	ENSG00000114126	TFDP2	protein_coding	Intergenic	.	.	Alu	0.315789
5	142112575	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.166667
5	142136497	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.9
5	142136499	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.3
5	142136500	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.3
5	142136661	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.230769
5	142136810	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.214286
5	142136816	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.230769
5	142136977	A->G	+	ENSG00000131507	NDFIP1	protein_coding	Intergenic	.	.	Alu	0.6
3	142316249	A->G	-	ENSG00000114127	XRN1	protein_coding	Intergenic	.	.	Alu	0.272727
3	142543712	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.2
3	142543724	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.583333
3	142543798	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.583333
3	142543808	A->G	-	ENSG00000175054	ATR	protein_coding	Intergenic	.	.	Alu	0.846154
5	143048660	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.3
5	143048666	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.3
5	143048669	A->G	+	ENSG00000145819	ARHGAP26	protein_coding	Intergenic	.	.	Alu	0.3
2	143272443	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.5
2	143272444	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.7
2	143272510	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.3125
2	143272532	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.692308
2	143272533	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.615385
8	143347417	A->G	+	ENSG00000184428	TOP1MT	protein_coding	Intergenic	.	.	Alu	1
2	143373509	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.857143
2	143373515	A->G	+	ENSG00000075884	ARHGAP15	protein_coding	Intergenic	.	.	Alu	0.357143
4	143394019	A->G	+	ENSG00000109458	GAB1	protein_coding	Intergenic	.	.	Alu	0.3
2	143605750	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.75
2	143605827	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.181818
2	143605828	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.757576
2	143605958	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.4
2	143606023	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.578947
2	143606024	A->G	+	ENSG00000283994	AC092652.3	sense_intronic	Intergenic	.	.	Alu	0.105263
X	143618334	A->G	-	.	.	.	Intergenic	.	.	Alu	0.933333
4	145176003	A->G	-	ENSG00000164164	OTUD4	protein_coding	Intergenic	.	.	Alu	1
4	145176004	A->G	-	ENSG00000164164	OTUD4	protein_coding	Intergenic	.	.	Alu	0.142857
1	145774514	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.363636
1	145782014	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.72
1	145782018	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.08
1	145789343	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145789347	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.142857
1	145793911	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0606061
1	145793916	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0571429
1	145793936	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.0512821
1	145793940	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.178571
1	145793981	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.190476
1	145794008	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.142857
1	145794062	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.2
1	145794071	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145794081	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.142857
1	145799200	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.181818
1	145799206	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.2
1	145799216	A->G	-	ENSG00000265491	RNF115	protein_coding	Intergenic	.	.	Alu	0.3
1	145835199	A->G	+	ENSG00000186141	POLR3C	protein_coding	Intergenic	.	.	Alu	0.2
1	145915078	A->G	-	ENSG00000131779	PEX11B	protein_coding	Intergenic	.	.	Alu	1
1	145915097	A->G	-	ENSG00000131779	PEX11B	protein_coding	Intergenic	.	.	Alu	1
1	146941682	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.3
1	146941704	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.75
1	146941709	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.76
1	146941711	A->G	+	ENSG00000268043	NBPF12	protein_coding	Intergenic	.	.	Alu	0.72
1	147269522	A->G	+	ENSG00000131778	CHD1L	protein_coding	Intergenic	.	.	Alu	0.714286
X	147947589	A->G	+	ENSG00000102081	FMR1	protein_coding	Intergenic	.	.	Alu	0.2
X	147947616	A->G	+	ENSG00000102081	FMR1	protein_coding	Intergenic	.	.	Alu	0.2
7	148838207	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.153846
7	148838213	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.181818
7	148869406	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.133333
7	148869435	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.153846
7	148871604	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.181818
7	148871774	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.454545
7	148871778	A->G	-	ENSG00000106462	EZH2	protein_coding	Intergenic	.	.	Alu	0.230769
7	149243205	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.0952381
7	149243206	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.25
7	149243210	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.391304
7	149243239	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.117647
7	149243246	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.294118
7	149243250	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.294118
7	149243272	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.666667
7	149243278	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.285714
7	149243295	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.117647
7	149243299	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.368421
7	149243399	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.3
7	149245231	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.454545
7	149245257	A->G	+	ENSG00000170260	ZNF212	protein_coding	Intergenic	.	.	Alu	0.363636
6	149348191	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.190476
6	149348268	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.263158
6	149348286	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.1875
6	149348331	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0952381
6	149348338	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.0909091
6	149348735	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.142857
6	149348778	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.125
6	149348783	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.142857
6	149348819	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.3
6	149348860	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.166667
6	149349299	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.142857
6	149349326	A->G	+	ENSG00000055208	TAB2	protein_coding	Intergenic	.	.	Alu	0.133333
5	149500404	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	149510384	A->G	-	ENSG00000113712	CSNK1A1	protein_coding	Intergenic	.	.	Alu	0.0869565
6	149578289	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.133333
6	149578406	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.3
6	149578407	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.2
6	149583316	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.25
6	149583332	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.333333
6	149583342	A->G	+	ENSG00000055211	GINM1	protein_coding	Intergenic	.	.	Alu	0.153846
6	149729021	A->G	-	ENSG00000120253	NUP43	protein_coding	Intergenic	.	.	Alu	0.0869565
6	149729123	A->G	-	ENSG00000120253	NUP43	protein_coding	Intergenic	.	.	Alu	0.214286
6	149729184	A->G	-	ENSG00000120253	NUP43	protein_coding	Intergenic	.	.	Alu	0.181818
1	150337599	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.2
1	150337614	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.3
1	150340779	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.2
1	150340941	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.1875
1	150340950	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.153846
1	150340984	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	1
1	150341026	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.125
1	150341041	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.2
1	150341047	A->G	+	ENSG00000117360	PRPF3	protein_coding	Intergenic	.	.	Alu	0.133333
5	150365125	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.0606061
5	150365159	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.0909091
5	150365174	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.0967742
5	150365191	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.3125
5	150365195	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.09375
5	150365201	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.5
5	150365217	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.193548
5	150365227	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.1
5	150365297	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.344828
5	150365298	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.448276
5	150365331	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.0740741
5	150365347	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.190476
5	150365369	A->G	-	ENSG00000070814	TCOF1	protein_coding	Intergenic	.	.	Alu	0.166667
3	150431073	A->G	+	ENSG00000196428	TSC22D2	protein_coding	Intergenic	.	.	Alu	0.538462
1	150591229	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	150598149	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
1	150598153	A->G	-	.	.	.	Intergenic	.	.	Alu	0.333333
1	150598169	A->G	-	.	.	.	Intergenic	.	.	Alu	0.75
1	150602496	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.25
1	150602536	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.166667
1	150602562	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.227273
1	150605711	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.181818
1	150614119	A->G	-	ENSG00000143420	ENSA	protein_coding	Intergenic	.	.	Alu	0.166667
5	150713498	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.2
5	150713506	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.153846
5	150713546	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.375
5	150713582	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.166667
5	150728908	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.181818
5	150728970	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.133333
5	150729137	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.130435
5	150729153	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0869565
5	150729161	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.192308
5	150729164	A->G	-	ENSG00000132912	DCTN4	protein_coding	Intergenic	.	.	Alu	0.0689655
4	150738076	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.333333
4	150738080	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0952381
4	150738083	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
4	150738102	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.583333
4	150738128	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.105263
4	150738135	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.454545
4	150738162	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.181818
4	150738241	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.266667
4	150738270	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.384615
4	150738272	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0833333
4	150746582	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.3
4	150746613	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.2
3	150755423	A->G	-	ENSG00000181788	SIAH2	protein_coding	Intergenic	.	.	Alu	0.117647
3	150755428	A->G	-	ENSG00000181788	SIAH2	protein_coding	Intergenic	.	.	Alu	0.1875
4	150788141	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.115385
4	150788164	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.214286
4	150788211	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.304348
4	150788302	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.363636
4	150841715	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.0909091
4	150841809	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.133333
4	150841853	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.25
4	150841859	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.307692
4	150841861	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.230769
4	150864732	A->G	-	ENSG00000198589	LRBA	protein_coding	Intergenic	.	.	Alu	0.181818
1	150931322	A->G	+	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.153846
1	150958287	A->G	-	ENSG00000143379	SETDB1	protein_coding	Intergenic	.	.	Alu	0.2
1	150993344	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.2
1	150993862	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.625
1	150993898	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.882353
1	150993906	A->G	-	ENSG00000143412	ANXA9	protein_coding	Intergenic	.	.	Alu	0.705882
4	151110631	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.315789
4	151110700	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0909091
4	151110724	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.142857
4	151110792	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.1
4	151110795	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.25
4	151110851	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.285714
4	151115736	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.285714
4	151115804	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.16129
4	151115838	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0857143
4	151120099	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.111111
4	151120126	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.142857
4	151125580	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.04
4	151125592	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.119048
4	151125665	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0571429
4	151125761	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.0689655
4	151125795	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.166667
4	151126592	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.615385
4	151126593	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.153846
4	151130761	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.166667
4	151130820	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.181818
4	151130872	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.181818
4	151130889	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.142857
4	151130890	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.357143
4	151130892	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.1875
4	151130928	A->G	+	ENSG00000109686	SH3D19	protein_coding	Intergenic	.	.	Alu	0.15
1	151199398	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	151199431	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.25
1	151199494	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.142857
1	151203470	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.6
1	151203471	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.4
1	151203677	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.181818
1	151203703	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.272727
1	151203713	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.133333
1	151223855	A->G	+	ENSG00000143398	PIP5K1A	protein_coding	Intergenic	.	.	Alu	0.0666667
6	151245494	A->G	+	ENSG00000131016	AKAP12	protein_coding	Intergenic	.	.	Alu	0.214286
6	151393904	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
6	151394128	A->G	+	.	.	.	Intergenic	.	.	Alu	0.111111
6	151397758	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
6	151397785	A->G	+	.	.	.	Intergenic	.	.	Alu	0.285714
6	151397788	A->G	+	.	.	.	Intergenic	.	.	Alu	0.692308
6	151397825	A->G	+	.	.	.	Intergenic	.	.	Alu	0.583333
6	151397937	A->G	+	.	.	.	Intergenic	.	.	Alu	0.153846
6	151397955	A->G	+	.	.	.	Intergenic	.	.	Alu	0.266667
6	151397956	A->G	+	.	.	.	Intergenic	.	.	Alu	0.333333
6	151397977	A->G	+	.	.	.	Intergenic	.	.	Alu	0.181818
2	151420503	A->G	+	ENSG00000080345	RIF1	protein_coding	Intergenic	.	.	Alu	0.166667
1	151436504	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.3
1	151436516	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151436555	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.166667
1	151436569	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.153846
1	151436581	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.333333
1	151447519	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	1
1	151447524	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151447549	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.266667
1	151447575	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.538462
1	151447736	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.416667
1	151447740	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.142857
1	151447765	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.25
1	151447771	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.3
1	151447779	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.166667
1	151450062	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.176471
1	151450065	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.368421
1	151450067	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.1
1	151450099	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.0833333
1	151450128	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.1
1	151450134	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.111111
1	151450137	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.25
1	151450164	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.235294
1	151450170	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.411765
1	151450210	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.0952381
1	151450225	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.111111
1	151450235	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.111111
1	151450236	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.111111
1	151450278	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.2
1	151452955	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.705882
1	151455942	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.388889
1	151456016	A->G	-	ENSG00000143442	POGZ	protein_coding	Intergenic	.	.	Alu	0.166667
7	151496912	A->G	-	ENSG00000106615	RHEB	protein_coding	Intergenic	.	.	Alu	0.142857
7	151496918	A->G	-	ENSG00000106615	RHEB	protein_coding	Intergenic	.	.	Alu	0.176471
5	151793773	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.2
5	151793893	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	1
5	151793907	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.666667
5	151793920	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.105263
5	151793934	A->G	+	ENSG00000145907	G3BP1	protein_coding	Intergenic	.	.	Alu	0.4
7	152309392	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.111111
7	152309421	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.166667
7	152309439	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.08
7	152309566	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152309632	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.133333
7	152325553	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.307692
7	152325558	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.166667
7	152325585	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.2
7	152325611	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.2
3	152329502	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0689655
3	152329506	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.08
3	152329528	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.125
3	152329542	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0430108
3	152329558	A->G	+	ENSG00000152601	MBNL1	protein_coding	Intergenic	.	.	Alu	0.0363636
7	152331786	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.3
7	152387576	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.7
7	152391269	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
7	152391406	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.352941
7	152391417	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.214286
7	152391418	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.133333
7	152391438	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.428571
7	152391482	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0869565
7	152391514	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.105263
7	152391701	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152391730	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
7	152391731	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
7	152391792	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.461538
7	152401224	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.428571
7	152404975	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.3
7	152404999	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.25
7	152405027	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.133333
7	152405039	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.214286
7	152405049	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.117647
7	152405122	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.117647
7	152405123	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.166667
7	152405347	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.258065
7	152405383	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152405385	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.166667
7	152405404	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.142857
7	152405409	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.176471
7	152405446	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0769231
7	152405509	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.15625
7	152405512	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.121212
7	152405517	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.1
7	152405518	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0967742
7	152414719	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.272727
7	152414879	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.1875
7	152414880	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152414885	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.117647
7	152414946	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.181818
7	152426316	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.263158
7	152426330	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.125
7	152426335	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.111111
7	152426353	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.111111
7	152426376	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.21875
7	152426412	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.0645161
7	152426413	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.1
7	152426436	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.36
7	152426457	A->G	-	ENSG00000055609	KMT2C	protein_coding	Intergenic	.	.	Alu	0.222222
4	153172392	A->G	-	ENSG00000109654	TRIM2	protein_coding	Intergenic	.	.	Alu	0.916667
4	153361651	A->G	+	ENSG00000121211	MND1	protein_coding	Intergenic	.	.	Alu	0.666667
4	153361652	A->G	+	ENSG00000121211	MND1	protein_coding	Intergenic	.	.	Alu	0.657895
4	153361654	A->G	+	ENSG00000121211	MND1	protein_coding	Intergenic	.	.	Alu	0.694444
1	153840216	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
1	153859990	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.222222
1	153860027	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.4
1	153860044	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.52
1	153860090	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.0714286
1	153878229	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.363636
1	153878328	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.363636
1	153878356	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.214286
1	153886760	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.583333
1	153886762	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.181818
1	153886788	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.5
1	153886832	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.2
1	153892859	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.666667
1	153907701	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.1875
1	153907724	A->G	-	ENSG00000143614	GATAD2B	protein_coding	Intergenic	.	.	Alu	0.181818
X	153911320	A->G	-	ENSG00000089820	ARHGAP4	protein_coding	Intergenic	.	.	Alu	0.555556
X	154066185	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.4
X	154066204	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.272727
X	154066389	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.181818
X	154068946	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.333333
X	154068947	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.583333
X	154068965	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.384615
X	154068969	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.153846
X	154086822	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.6
X	154087709	A->G	-	ENSG00000169057	MECP2	protein_coding	Intergenic	.	.	Alu	0.166667
6	154793664	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.4
6	154793665	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.45
6	154793668	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.666667
6	154793681	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.214286
6	154793695	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.368421
6	154793721	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.266667
6	154793736	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.181818
6	154793765	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.153846
6	154825744	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.117647
6	154825776	A->G	+	ENSG00000213079	SCAF8	protein_coding	Intergenic	.	.	Alu	0.181818
5	154866828	A->G	+	ENSG00000155508	CNOT8	protein_coding	Intergenic	.	.	Alu	0.6
3	155093735	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.727273
3	155093736	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.545455
3	155093741	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.3
3	155098368	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.636364
3	155107232	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.1875
3	155107233	A->G	+	ENSG00000196549	MME	protein_coding	Intergenic	.	.	Alu	0.9375
1	155538541	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155538584	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155538716	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.176471
1	155538774	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155547021	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.2
1	155547029	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.2
1	155553869	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155553908	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.133333
1	155553935	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.272727
1	155553957	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.15
1	155553961	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.157895
1	155553970	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.0952381
1	155554024	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155554029	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.111111
1	155558648	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155558807	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.222222
1	155558821	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.166667
1	155558917	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.0909091
1	155558933	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.0833333
1	155558956	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.153846
1	155559039	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.2
1	155559047	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.272727
1	155559071	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.3
1	155559093	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.230769
1	155559112	A->G	-	ENSG00000116539	ASH1L	protein_coding	Intergenic	.	.	Alu	0.3
1	155565184	A->G	+	.	.	.	Intergenic	.	.	Alu	0.166667
1	155681903	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.261905
1	155681904	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.285714
1	155681912	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0697674
1	155681928	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0882353
1	155681957	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.176471
1	155681958	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0588235
1	155681980	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0869565
1	155684601	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.136364
1	155684633	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.5
1	155684636	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.206897
1	155684637	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.137931
1	155684653	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.454545
1	155684660	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.333333
1	155684701	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.0740741
1	155684706	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.28
1	155684714	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.545455
1	155684724	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.375
1	155684750	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	155684754	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.117647
1	155684779	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.466667
1	155684780	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.214286
1	155684810	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.142857
1	155684813	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.214286
1	155684820	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	155751317	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.333333
1	155751344	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.461538
1	155751345	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.307692
1	155751359	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.153846
1	155751391	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.235294
1	155751399	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.136364
1	155751407	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.857143
1	155751464	A->G	+	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.461538
1	155836387	A->G	-	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.2
1	155836398	A->G	-	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.666667
1	155836414	A->G	-	ENSG00000116580	GON4L	protein_coding	Intergenic	.	.	Alu	0.142857
1	155919025	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.181818
1	155922243	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.266667
1	155922244	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.666667
1	155922328	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.4
1	155922351	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.111111
1	155922382	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.133333
1	155922383	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.133333
1	155922387	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.583333
1	155922417	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.461538
1	155922418	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.214286
1	155924338	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.2
1	155924347	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.666667
1	155924357	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	1
1	155924417	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.333333
1	155924418	A->G	-	ENSG00000132680	KHDC4	protein_coding	Intergenic	.	.	Alu	0.5
1	155939316	A->G	-	.	.	.	Intergenic	.	.	Alu	0.45
6	156129769	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
6	156156042	A->G	-	.	.	.	Intergenic	.	.	Alu	0.285714
6	156156047	A->G	-	.	.	.	Intergenic	.	.	Alu	0.153846
6	156177139	A->G	-	.	.	.	Intergenic	.	.	Alu	0.133333
6	156177152	A->G	-	.	.	.	Intergenic	.	.	Alu	0.117647
6	156177166	A->G	-	.	.	.	Intergenic	.	.	Alu	0.111111
6	156195833	A->G	-	.	.	.	Intergenic	.	.	Alu	0.166667
6	156195869	A->G	-	.	.	.	Intergenic	.	.	Alu	0.2
1	156472847	A->G	-	ENSG00000116604	MEF2D	protein_coding	Intergenic	.	.	Alu	0.125
1	156553848	A->G	-	ENSG00000183856	IQGAP3	protein_coding	Intergenic	.	.	Alu	0.7
6	156835055	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.2
6	156835119	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.0952381
6	156835125	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.1
6	156835161	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.166667
6	156896703	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.647059
6	156896721	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.625
6	156896723	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.647059
6	156946124	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.0769231
6	156946252	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.097561
6	156946257	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.0952381
6	156946279	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.0666667
6	157053969	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.25
6	157053970	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.166667
6	157053992	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.2
6	157054103	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.826087
6	157054104	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.75
6	157054120	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.130435
6	157054144	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.142857
6	157054145	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.263158
6	157114262	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.181818
6	157114339	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.4
6	157114346	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.142857
6	157114347	A->G	+	ENSG00000049618	ARID1B	protein_coding	Intergenic	.	.	Alu	0.266667
2	157332153	A->G	-	.	.	.	Intergenic	.	.	Alu	0.363636
5	157386800	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.117647
5	157386813	A->G	+	ENSG00000251405	AC008676.2	sense_overlapping	Intergenic	.	.	Alu	0.5
5	157829750	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.142857
5	157829769	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.2
5	157830655	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.130435
5	157830658	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.217391
5	157830684	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.210526
5	157830691	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.555556
5	157830703	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.538462
5	157830704	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.25
5	157831838	A->G	-	ENSG00000113282	CLINT1	protein_coding	Intergenic	.	.	Alu	0.333333
6	157915718	A->G	+	ENSG00000130340	SNX9	protein_coding	Intergenic	.	.	Alu	0.272727
7	158776910	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.157895
7	158789417	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.354839
7	158789449	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0869565
7	158789454	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.315789
7	158789459	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.2
7	158789478	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.190476
7	158789494	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.3125
7	158789495	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.4375
7	158789544	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.625
7	158789559	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.176471
7	158789575	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.230769
7	158792804	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.105263
7	158792865	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.166667
7	158792866	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.294118
7	158792880	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.153846
7	158792907	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.615385
7	158792973	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.230769
7	158792989	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.833333
7	158793024	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0952381
7	158793031	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.166667
7	158793035	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.08
7	158793041	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	1
6	158798729	A->G	-	ENSG00000092820	EZR	protein_coding	Intergenic	.	.	Alu	0.1
7	158800322	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.157895
7	158800326	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.142857
7	158800679	A->G	-	ENSG00000117868	ESYT2	protein_coding	Intergenic	.	.	Alu	0.0434783
4	159121775	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.3
4	159121776	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.75
4	159121923	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.12
4	159121927	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	1
4	159121980	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.26087
4	159121984	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.136364
4	159121989	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.7
4	159237920	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.1875
4	159237943	A->G	+	ENSG00000109756	RAPGEF2	protein_coding	Intergenic	.	.	Alu	0.153846
6	159734242	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.888889
6	159734249	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.117647
6	159734266	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.111111
6	159734291	A->G	+	ENSG00000112096	SOD2	protein_coding	Intergenic	.	.	Alu	0.117647
2	159734739	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.16
2	159734828	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.08
2	159734849	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.130435
2	159734861	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.235294
2	159734884	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.0909091
2	159734888	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.136364
2	159734892	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.130435
2	159734924	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.1
2	159734937	A->G	+	ENSG00000136536	7-Mar	protein_coding	Intergenic	.	.	Alu	0.0769231
1	160302620	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0769231
1	160302651	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0967742
1	160302652	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.0967742
1	160302687	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.178571
1	160302693	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.170213
1	160302757	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.28
1	160302759	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	1
1	160302791	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.181818
1	160302826	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.611111
1	160302827	A->G	-	ENSG00000122218	COPA	protein_coding	Intergenic	.	.	Alu	0.166667
3	160540096	A->G	-	ENSG00000186432	KPNA4	protein_coding	Intergenic	.	.	Alu	0.2
1	161231612	A->G	-	ENSG00000143257	NR1I3	protein_coding	Intergenic	.	.	Alu	1
1	161231647	A->G	-	ENSG00000143257	NR1I3	protein_coding	Intergenic	.	.	Alu	1
6	167006462	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.3
6	167006472	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.166667
6	167009334	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.2
6	167009389	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.4
6	167009395	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.111111
6	167009416	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.285714
6	167009459	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.363636
6	167020722	A->G	+	ENSG00000213066	FGFR1OP	protein_coding	Intergenic	.	.	Alu	0.2
2	168644972	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.153846
2	168735771	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.4
2	168735783	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.384615
2	168735950	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.125
2	168735951	A->G	+	ENSG00000172292	CERS6	protein_coding	Intergenic	.	.	Alu	0.368421
3	168891466	A->G	+	.	.	.	Intergenic	.	.	Alu	0.2
2	169588840	A->G	+	ENSG00000138398	PPIG	protein_coding	Intergenic	.	.	Alu	0.105263
5	169805195	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.642857
5	169805200	A->G	+	ENSG00000134516	DOCK2	protein_coding	Intergenic	.	.	Alu	0.214286
1	169993240	A->G	-	ENSG00000075945	KIFAP3	protein_coding	Intergenic	.	.	Alu	0.25
3	170133449	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	1
3	170133450	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	1
3	170133468	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	1
3	170146985	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.1875
3	170152723	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.625
3	170152733	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.263158
3	170152865	A->G	-	ENSG00000173889	PHC3	protein_coding	Intergenic	.	.	Alu	0.3
3	170242361	A->G	+	ENSG00000163558	PRKCI	protein_coding	Intergenic	.	.	Alu	0.230769
2	171074133	A->G	-	ENSG00000198586	TLK1	protein_coding	Intergenic	.	.	Alu	0.153846
2	171074136	A->G	-	ENSG00000198586	TLK1	protein_coding	Intergenic	.	.	Alu	0.769231
1	171492869	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.545455
1	171492932	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.333333
1	171492935	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.666667
1	171492937	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.230769
1	171492985	A->G	+	ENSG00000117523	PRRC2C	protein_coding	Intergenic	.	.	Alu	0.5
2	171526120	A->G	+	ENSG00000071967	CYBRD1	protein_coding	Intergenic	.	.	Alu	0.7
2	171694488	A->G	-	ENSG00000077380	DYNC1I2	protein_coding	Intergenic	.	.	Alu	1
2	171694495	A->G	-	ENSG00000077380	DYNC1I2	protein_coding	Intergenic	.	.	Alu	1
5	171946912	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
5	171946952	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.461538
5	171946953	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.384615
5	171998431	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.227273
5	171998442	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
5	171998447	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.619048
5	171998448	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.272727
5	171998579	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.3
5	172002907	A->G	-	ENSG00000072803	FBXW11	protein_coding	Intergenic	.	.	Alu	0.2
3	172053766	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.285714
3	172108120	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.363636
3	172108123	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.363636
5	172114559	A->G	-	ENSG00000072786	STK10	protein_coding	Intergenic	.	.	Alu	1
5	172114588	A->G	-	ENSG00000072786	STK10	protein_coding	Intergenic	.	.	Alu	1
3	172179696	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.2
3	172179762	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.647059
3	172179772	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.333333
3	172179785	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.0833333
3	172179808	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.0952381
3	172179840	A->G	+	ENSG00000075420	FNDC3B	protein_coding	Intergenic	.	.	Alu	0.222222
5	173082721	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.142857
5	173082722	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.166667
5	173082758	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.125
5	173082826	A->G	+	ENSG00000164463	CREBRF	protein_coding	Intergenic	.	.	Alu	0.210526
4	173175998	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.1
4	173176017	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.0952381
4	173209996	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.125
4	173210010	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.205882
4	173210022	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.0588235
4	173241116	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.181818
4	173241142	A->G	+	ENSG00000109586	GALNT7	protein_coding	Intergenic	.	.	Alu	0.125
2	173946800	A->G	-	ENSG00000172845	SP3	protein_coding	Intergenic	.	.	Alu	0.25
1	174003239	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.454545
1	174003265	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.3125
1	174003275	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.538462
1	174003790	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.294118
1	174003800	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.5625
1	174003826	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.25
1	174003950	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.111111
1	174016490	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0645161
1	174016510	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	174016518	A->G	-	ENSG00000135870	RC3H1	protein_coding	Intergenic	.	.	Alu	0.357143
2	174218959	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.125
2	174219515	A->G	-	ENSG00000138430	OLA1	protein_coding	Intergenic	.	.	Alu	0.2
1	174475712	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.2
1	174832111	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.454545
1	174832146	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.8
1	174840705	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.2
1	174856285	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.2
3	174875038	A->G	+	ENSG00000177694	NAALADL2	protein_coding	Intergenic	.	.	Alu	0.909091
1	174905744	A->G	+	ENSG00000152061	RABGAP1L	protein_coding	Intergenic	.	.	Alu	0.117647
2	175142221	A->G	-	ENSG00000115966	ATF2	protein_coding	Intergenic	.	.	Alu	0.172414
2	175623878	A->G	+	.	.	.	Intergenic	.	.	Alu	0.307692
1	175976521	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176041381	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176041383	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176041440	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.3125
1	176041444	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.1875
1	176041445	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.1875
1	176041456	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.583333
1	176041462	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.454545
1	176041509	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.5
1	176041513	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.4
1	176041525	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176041526	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.2
1	176059615	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	176064684	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.0952381
1	176064716	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.333333
1	176064743	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.181818
1	176070404	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.166667
1	176070433	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.3
1	176070479	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.5
1	176070496	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.416667
1	176070773	A->G	-	ENSG00000143207	COP1	protein_coding	Intergenic	.	.	Alu	0.272727
5	176262549	A->G	+	ENSG00000170085	SIMC1	protein_coding	Intergenic	.	.	Alu	0.153846
5	176262550	A->G	+	ENSG00000170085	SIMC1	protein_coding	Intergenic	.	.	Alu	0.230769
5	176454458	A->G	+	ENSG00000113194	FAF2	protein_coding	Intergenic	.	.	Alu	0.133333
5	176454527	A->G	+	ENSG00000113194	FAF2	protein_coding	Intergenic	.	.	Alu	0.125
5	177071423	A->G	+	ENSG00000113761	ZNF346	protein_coding	Intergenic	.	.	Alu	0.166667
5	177071432	A->G	+	ENSG00000113761	ZNF346	protein_coding	Intergenic	.	.	Alu	0.235294
5	177071437	A->G	+	ENSG00000113761	ZNF346	protein_coding	Intergenic	.	.	Alu	0.117647
3	177158321	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.333333
3	177158325	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.3
3	177164418	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.181818
3	177188025	A->G	-	ENSG00000177565	TBL1XR1	protein_coding	Intergenic	.	.	Alu	0.333333
2	177227993	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.5
2	177227997	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.105263
2	177228008	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.571429
2	177228018	A->G	+	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.0714286
2	177246811	A->G	-	ENSG00000116044	NFE2L2	protein_coding	Intergenic	.	.	Alu	0.133333
5	177321800	A->G	-	.	.	.	Intergenic	.	.	Alu	0.181818
5	177649772	A->G	-	ENSG00000246596	AC139795.1	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.230769
5	178217679	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.153846
5	178217680	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.916667
5	178217681	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.75
5	178217695	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.133333
5	178217738	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.647059
5	178220243	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	0.666667
5	178220244	A->G	+	ENSG00000175309	PHYKPL	protein_coding	Intergenic	.	.	Alu	1
2	178435030	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.363636
2	178435031	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.454545
2	178435039	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.363636
2	178435041	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.3
2	178435057	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.2
2	178435286	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.181818
2	178435303	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.636364
2	178435304	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.454545
2	178435308	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.785714
2	178435328	A->G	+	ENSG00000180228	PRKRA	protein_coding	Intergenic	.	.	Alu	0.230769
1	179085277	A->G	+	ENSG00000186283	TOR3A	protein_coding	Intergenic	.	.	Alu	1
1	179085303	A->G	+	ENSG00000186283	TOR3A	protein_coding	Intergenic	.	.	Alu	1
1	179085304	A->G	+	ENSG00000186283	TOR3A	protein_coding	Intergenic	.	.	Alu	1
1	179116782	A->G	-	ENSG00000143322	ABL2	protein_coding	Intergenic	.	.	Alu	1
3	179173458	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.529412
3	179173464	A->G	+	ENSG00000121879	PIK3CA	protein_coding	Intergenic	.	.	Alu	0.210526
2	179247489	A->G	-	ENSG00000187231	SESTD1	protein_coding	Intergenic	.	.	Alu	0.5
3	179430592	A->G	-	ENSG00000114450	GNB4	protein_coding	Intergenic	.	.	Alu	0.25
5	179741607	A->G	+	ENSG00000161021	MAML1	protein_coding	Intergenic	.	.	Alu	0.230769
5	179741611	A->G	+	ENSG00000161021	MAML1	protein_coding	Intergenic	.	.	Alu	0.307692
5	179747730	A->G	+	ENSG00000161021	MAML1	protein_coding	Intergenic	.	.	Alu	0.181818
5	179747731	A->G	+	ENSG00000161021	MAML1	protein_coding	Intergenic	.	.	Alu	0.2
5	180039282	A->G	-	ENSG00000113269	RNF130	protein_coding	Intergenic	.	.	Alu	0.166667
5	180497089	A->G	+	ENSG00000113300	CNOT6	protein_coding	Intergenic	.	.	Alu	0.2
3	180917693	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.25
3	180917732	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.129032
3	180917737	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.1
3	180917763	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.117647
3	180917765	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.266667
3	180917771	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.153846
3	180917826	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.0571429
3	180917836	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.114286
3	180917844	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.205128
3	180917867	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.111111
3	180917879	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.25
3	180930949	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.5
3	180942123	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.592593
3	180942124	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.291667
3	180942212	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.142857
3	180942218	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.133333
3	180942219	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.133333
3	180942257	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.416667
3	180942284	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.0909091
3	180942299	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.269231
3	180942319	A->G	+	ENSG00000114416	FXR1	protein_coding	Intergenic	.	.	Alu	0.129032
3	182841826	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.142857
3	182841828	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.142857
3	182841829	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.25
3	182841832	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.538462
3	182841864	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.105263
3	182841868	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.125
3	182841904	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.272727
3	182841966	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.181818
3	182894934	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.7
3	182906505	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.4
3	182906530	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.333333
3	182906544	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.454545
3	182906690	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.153846
3	182906815	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.15
3	182906839	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.571429
3	182906910	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.45
3	182906950	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.833333
3	182907012	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	1
3	182907013	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.380952
3	182907014	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.190476
3	182907038	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.0869565
3	182907050	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.384615
3	182907063	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.0740741
3	182907075	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.482759
3	182909893	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.181818
3	182909902	A->G	+	ENSG00000058063	ATP11B	protein_coding	Intergenic	.	.	Alu	0.157895
3	183031744	A->G	-	ENSG00000078070	MCCC1	protein_coding	Intergenic	.	.	Alu	0.3
3	183031777	A->G	-	ENSG00000078070	MCCC1	protein_coding	Intergenic	.	.	Alu	0.3
3	183641357	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.166667
3	183641367	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.181818
3	183656908	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.558824
3	183673058	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.04
3	183673076	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0789474
3	183673098	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0882353
3	183673117	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.111111
3	183673137	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.3
3	183675661	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.138889
3	183675675	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0697674
3	183675677	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0465116
3	183675683	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.0540541
3	183675695	A->G	+	ENSG00000114796	KLHL24	protein_coding	Intergenic	.	.	Alu	0.133333
3	183731248	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.142857
3	183731249	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.157895
3	183731251	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.111111
3	183764187	A->G	+	ENSG00000163872	YEATS2	protein_coding	Intergenic	.	.	Alu	0.166667
4	184781676	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.285714
4	184781677	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.666667
4	184781747	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.4
4	184781748	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.5
4	184799215	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.142857
4	184799254	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.166667
4	184799389	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.583333
4	184799390	A->G	-	ENSG00000151726	ACSL1	protein_coding	Intergenic	.	.	Alu	0.416667
1	184806906	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.181818
1	184884296	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.133333
1	184955483	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.153846
1	184960831	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.5
1	184960833	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.363636
1	184960876	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.181818
1	184961266	A->G	-	ENSG00000135842	FAM129A	protein_coding	Intergenic	.	.	Alu	0.3
4	185315241	A->G	+	ENSG00000109762	SNX25	protein_coding	Intergenic	.	.	Alu	0.928571
3	185620986	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	185621077	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.333333
3	185621082	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.210526
3	185626899	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.2
3	185626930	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.142857
3	185626955	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.190476
3	185626985	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.125
3	185627029	A->G	+	ENSG00000163904	SENP2	protein_coding	Intergenic	.	.	Alu	0.111111
3	185674970	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.136364
3	185707139	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.133333
3	185707142	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.666667
3	185707143	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185707168	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.25
3	185707375	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185707390	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.583333
3	185707412	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.666667
3	185707486	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	1
3	185707491	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	1
3	185707524	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	1
3	185707527	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	1
3	185788791	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.157895
3	185788807	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.578947
3	185788811	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.375
3	185788850	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.172414
3	185788851	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.206897
3	185788894	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	185788914	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.217391
3	185788950	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.307692
3	185788959	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.2
3	185788968	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.333333
3	185788992	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.166667
3	185788994	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	185789052	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	185795008	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.105263
3	185798898	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.4
3	185798947	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	185798992	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.2
3	185798999	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.692308
3	185799018	A->G	-	ENSG00000073792	IGF2BP2	protein_coding	Intergenic	.	.	Alu	0.133333
2	186645712	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.230769
2	186645713	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.142857
2	186645748	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.461538
2	186645780	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.583333
2	186645790	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.4
2	186645807	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.181818
2	186645812	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.142857
2	186645825	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.666667
2	186645861	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.166667
2	186645917	A->G	+	ENSG00000138448	ITGAV	protein_coding	Intergenic	.	.	Alu	0.3
3	190663574	A->G	-	.	.	.	Intergenic	.	.	Alu	1
2	190886684	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.111111
2	190886687	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	1
2	190886709	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.153846
2	190886730	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.153846
2	190886738	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.5
2	190886739	A->G	+	ENSG00000115419	GLS	protein_coding	Intergenic	.	.	Alu	0.5
3	194394341	A->G	-	.	.	.	Intergenic	.	.	Alu	0.25
3	194649954	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.107143
3	194649992	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.133333
3	194650016	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.294118
3	194650017	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.5625
3	194650058	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.7
3	194650064	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.5
3	194650123	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.230769
3	194650146	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.153846
3	194650152	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.230769
3	194650185	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.8
3	194650186	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.166667
3	194650191	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.8
3	194650192	A->G	-	ENSG00000041802	LSG1	protein_coding	Intergenic	.	.	Alu	0.866667
3	195321308	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195321325	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.173913
3	195321360	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.269231
3	195321361	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.307692
3	195321369	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.178571
3	195321430	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.117647
3	195321737	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0952381
3	195374750	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.08
3	195374812	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.266667
3	195374826	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195377217	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.125
3	195377223	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.214286
3	195377283	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.3
3	195417012	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.1
3	195417027	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.08
3	195417036	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0555556
3	195417044	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0512821
3	195417050	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.179487
3	195417076	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.0833333
3	195417159	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.2
3	195417183	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.214286
3	195431648	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.117647
3	195437590	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.181818
3	195438193	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.214286
3	195438232	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.153846
3	195439300	A->G	-	ENSG00000114331	ACAP2	protein_coding	Intergenic	.	.	Alu	0.454545
3	195676287	A->G	+	ENSG00000215837	SDHAP2	transcribed_unprocessed_pseudogene	Intergenic	.	.	Alu	0.08
3	195703984	A->G	+	ENSG00000283426	SMBD1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	0.230769
3	195703998	A->G	+	ENSG00000283426	SMBD1P	transcribed_unitary_pseudogene	Intergenic	.	.	Alu	1
2	196162676	A->G	-	ENSG00000081320	STK17B	protein_coding	Intergenic	.	.	Alu	0.2
3	196358861	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.117647
3	196358911	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.3
3	196423957	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.133333
3	196423975	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.1875
3	196424018	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.2
3	196424068	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.166667
3	196424589	A->G	-	ENSG00000163960	UBXN7	protein_coding	Intergenic	.	.	Alu	0.181818
3	196481813	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.2
3	196484296	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.15
3	196484304	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.0952381
3	196484310	A->G	-	ENSG00000163961	RNF168	protein_coding	Intergenic	.	.	Alu	0.176471
3	196642822	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.153846
3	196642949	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.105263
3	196648503	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.333333
3	196648512	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0769231
3	196648528	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0833333
3	196648547	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.1875
3	196648552	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.230769
3	196648565	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.25
3	196648566	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.166667
3	196657460	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.12
3	196657466	A->G	+	ENSG00000174004	NRROS	protein_coding	Intergenic	.	.	Alu	0.0769231
3	196869639	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.2
3	196907327	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.266667
3	196907353	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.28
3	196911689	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.277778
3	196911690	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.526316
3	196911722	A->G	+	ENSG00000119231	SENP5	protein_coding	Intergenic	.	.	Alu	0.133333
2	197246466	A->G	-	ENSG00000065413	ANKRD44	protein_coding	Intergenic	.	.	Alu	0.142857
2	197252609	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.181818
2	197265309	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.157895
2	197286403	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0689655
2	197286467	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.1
2	197286507	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0869565
2	197286513	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.190476
2	197286537	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0909091
2	197286577	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.115385
2	197300901	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intergenic	.	.	Alu	0.0526316
2	197431336	A->G	-	ENSG00000115524	SF3B1	protein_coding	Intergenic	.	.	Alu	0.153846
1	197651927	A->G	-	ENSG00000213047	DENND1B	protein_coding	Intergenic	.	.	Alu	1
1	197651928	A->G	-	ENSG00000213047	DENND1B	protein_coding	Intergenic	.	.	Alu	0.777778
2	198606076	A->G	-	ENSG00000225421	AC019330.1	lincRNA	Intergenic	.	.	Alu	1
1	198666103	A->G	+	ENSG00000081237	PTPRC	protein_coding	Intergenic	.	.	Alu	0.2
2	200883173	A->G	-	ENSG00000240344	PPIL3	protein_coding	Intergenic	.	.	Alu	0.461538
2	201066166	A->G	-	ENSG00000155744	FAM126B	protein_coding	Intergenic	.	.	Alu	0.181818
2	201066170	A->G	-	ENSG00000155744	FAM126B	protein_coding	Intergenic	.	.	Alu	0.363636
2	201066212	A->G	-	ENSG00000155744	FAM126B	protein_coding	Intergenic	.	.	Alu	0.181818
2	201066277	A->G	-	ENSG00000155744	FAM126B	protein_coding	Intergenic	.	.	Alu	1
1	202139330	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.142857
1	202139369	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.230769
1	202139706	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.176471
1	202139718	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.105263
1	202139738	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.142857
1	202139743	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.647059
1	202139776	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.363636
1	202139827	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.142857
1	202139830	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.307692
1	202139866	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.142857
1	202139921	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.0588235
1	202139923	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.228571
1	202139929	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.0909091
1	202139939	A->G	-	ENSG00000143862	ARL8A	protein_coding	Intergenic	.	.	Alu	0.2
2	202223354	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.666667
2	202227083	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.272727
2	202227333	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	202227345	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.545455
2	202227346	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.363636
2	202227411	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.583333
2	202227412	A->G	-	ENSG00000116030	SUMO1	protein_coding	Intergenic	.	.	Alu	0.25
2	202288364	A->G	+	ENSG00000055044	NOP58	protein_coding	Intergenic	.	.	Alu	0.142857
2	202470498	A->G	+	ENSG00000204217	BMPR2	protein_coding	Intergenic	.	.	Alu	0.9
2	202470506	A->G	+	ENSG00000204217	BMPR2	protein_coding	Intergenic	.	.	Alu	0.9
2	202470507	A->G	+	ENSG00000204217	BMPR2	protein_coding	Intergenic	.	.	Alu	0.9
2	202492524	A->G	+	ENSG00000204217	BMPR2	protein_coding	Intergenic	.	.	Alu	0.923077
1	202753737	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.1875
1	202753808	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.6
1	202768911	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.333333
1	202768912	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.157895
1	202769070	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.2
1	202769071	A->G	-	ENSG00000117139	KDM5B	protein_coding	Intergenic	.	.	Alu	0.2
2	202803358	A->G	+	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.2
2	202835479	A->G	-	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.846154
2	202846370	A->G	-	ENSG00000163596	ICA1L	protein_coding	Intergenic	.	.	Alu	0.181818
1	202948863	A->G	-	ENSG00000159346	ADIPOR1	protein_coding	Intergenic	.	.	Alu	0.2
2	203298502	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.166667
2	203298528	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.166667
2	203298581	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.15
2	203298658	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.181818
2	203300839	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.333333
2	203300878	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.181818
2	203300880	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.181818
2	203303486	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.2
2	203303525	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.166667
2	203303546	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.2
2	203303755	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.333333
2	203303756	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.294118
2	203303852	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.125
2	203305382	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	0.117647
2	203305399	A->G	+	ENSG00000119004	CYP20A1	protein_coding	Intergenic	.	.	Alu	1
1	203824161	A->G	+	ENSG00000058673	ZC3H11A	protein_coding	Intergenic	.	.	Alu	0.166667
1	203824956	A->G	+	ENSG00000058673	ZC3H11A	protein_coding	Intergenic	.	.	Alu	0.666667
1	203824957	A->G	+	ENSG00000058673	ZC3H11A	protein_coding	Intergenic	.	.	Alu	0.666667
1	204527210	A->G	+	ENSG00000198625	MDM4	protein_coding	Intergenic	.	.	Alu	0.181818
1	205730519	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.2
1	205730557	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.3125
1	205730658	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.1
1	205730682	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.111111
1	205730683	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.277778
1	205738060	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.181818
1	205738425	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.909091
1	205739821	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.133333
1	205739831	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.142857
1	205740088	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0666667
1	205740099	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.137931
1	205740114	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.454545
1	205740135	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	205740140	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.238095
1	205740167	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.153846
1	205740280	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.4
1	205740362	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.2
1	205740401	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.3
1	205744695	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.184211
1	205744709	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.179487
1	205744725	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.34375
1	205744729	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.535714
1	205744730	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.275862
1	205744770	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.178571
1	205744793	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.47619
1	205744805	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.142857
1	205744869	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.277778
1	205744899	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.0909091
1	205744904	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.125
1	205744927	A->G	-	ENSG00000069275	NUCKS1	protein_coding	Intergenic	.	.	Alu	0.176471
2	206068742	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.272727
2	206068754	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.105263
2	206068894	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.142857
2	206068909	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.153846
2	206068920	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.181818
2	206071083	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.0869565
2	206071103	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.26087
2	206071147	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.117647
2	206071387	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.181818
2	206073586	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.3
2	206073587	A->G	-	ENSG00000114933	INO80D	protein_coding	Intergenic	.	.	Alu	0.3
2	206137289	A->G	-	ENSG00000023228	NDUFS1	protein_coding	Intergenic	.	.	Alu	1
2	206137294	A->G	-	ENSG00000023228	NDUFS1	protein_coding	Intergenic	.	.	Alu	0.928571
1	208253964	A->G	-	.	.	.	Intergenic	.	.	Alu	0.615385
1	208253986	A->G	-	.	.	.	Intergenic	.	.	Alu	0.615385
1	208254007	A->G	-	.	.	.	Intergenic	.	.	Alu	1
1	211815851	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.105263
1	211825270	A->G	-	ENSG00000123684	LPGAT1	protein_coding	Intergenic	.	.	Alu	0.461538
1	212054629	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.3
1	212054632	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.2
1	212054755	A->G	+	ENSG00000143476	DTL	protein_coding	Intergenic	.	.	Alu	0.190476
1	212345140	A->G	+	ENSG00000066027	PPP2R5A	protein_coding	Intergenic	.	.	Alu	0.4
1	213179372	A->G	+	ENSG00000136643	RPS6KC1	protein_coding	Intergenic	.	.	Alu	0.333333
2	218247832	A->G	+	ENSG00000163466	ARPC2	protein_coding	Intergenic	.	.	Alu	0.2
2	218375844	A->G	+	.	.	.	Intergenic	.	.	Alu	1
2	218527055	A->G	-	ENSG00000135913	USP37	protein_coding	Intergenic	.	.	Alu	0.454545
2	224509282	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.25
2	224516351	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.0606061
2	224516455	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.166667
2	224516481	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.190476
2	224516557	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.125
2	224516566	A->G	-	ENSG00000036257	CUL3	protein_coding	Intergenic	.	.	Alu	0.363636
1	225869857	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.166667
1	225869866	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.272727
1	225869867	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.2
1	225869890	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.75
1	225869927	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.846154
1	225869933	A->G	-	ENSG00000196187	TMEM63A	protein_coding	Intergenic	.	.	Alu	0.272727
2	227539541	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.5
2	227539546	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.0833333
2	227539573	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.0769231
2	227539610	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.615385
2	227539612	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.714286
2	227539684	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.5
2	227539690	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.142857
2	227539691	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.230769
2	227539708	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.454545
2	227539720	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.5
2	227540016	A->G	+	ENSG00000173744	AGFG1	protein_coding	Intergenic	.	.	Alu	0.384615
2	229884315	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.6
2	229884326	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.6
2	229884374	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.2
2	229884385	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.923077
2	229884410	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.25
2	229884455	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.2
2	229884456	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.3
2	229884510	A->G	-	ENSG00000153827	TRIP12	protein_coding	Intergenic	.	.	Alu	0.3
2	230748659	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.181818
2	230748727	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.111111
2	230748728	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.1875
2	230748739	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.285714
2	230753569	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.2
2	230753626	A->G	+	ENSG00000135932	CAB39	protein_coding	Intergenic	.	.	Alu	0.454545
1	231396362	A->G	-	ENSG00000135766	EGLN1	protein_coding	Intergenic	.	.	Alu	0.5
1	231396365	A->G	-	ENSG00000135766	EGLN1	protein_coding	Intergenic	.	.	Alu	0.538462
1	231396369	A->G	-	ENSG00000135766	EGLN1	protein_coding	Intergenic	.	.	Alu	0.5
2	232705028	A->G	-	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.6
2	232705031	A->G	-	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.125
2	232705032	A->G	-	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.473684
2	232705039	A->G	-	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.25
2	232708595	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.166667
2	232708606	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.272727
2	232708625	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.571429
2	232708636	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.2
2	232726289	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.272727
2	232726290	A->G	+	ENSG00000204120	GIGYF2	protein_coding	Intergenic	.	.	Alu	0.181818
2	233136439	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233138114	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.25
2	233138156	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.181818
2	233138164	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.2
2	233155368	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233159465	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0526316
2	233159489	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	1
2	233159540	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.294118
2	233159542	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.105263
2	233159543	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.117647
2	233159545	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.1875
2	233159547	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.5
2	233159563	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.285714
2	233159573	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.375
2	233159615	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0425532
2	233159622	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.16
2	233159628	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.285714
2	233159635	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.159091
2	233159643	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.744186
2	233159651	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.1
2	233159669	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.131579
2	233175173	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.166667
2	233205146	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.4
2	233205180	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.5
2	233205183	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.277778
2	233205184	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.111111
2	233205188	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.136364
2	233205191	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.130435
2	233205193	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.0909091
2	233205501	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.210526
2	233205503	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intergenic	.	.	Alu	0.263158
2	233235662	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.466667
2	233235663	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.5
2	233235672	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.307692
2	233235728	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.4
2	233236747	A->G	+	ENSG00000085978	ATG16L1	protein_coding	Intergenic	.	.	Alu	0.2
2	233362373	A->G	+	ENSG00000077044	DGKD	protein_coding	Intergenic	.	.	Alu	0.153846
1	235135425	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.176471
1	235135470	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.181818
1	235145934	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.153846
1	235146101	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.0952381
1	235146156	A->G	-	ENSG00000188739	RBM34	protein_coding	Intergenic	.	.	Alu	0.1875
1	235218994	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	1
1	235219067	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0952381
1	235236023	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0869565
1	235239018	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.151515
1	235239050	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	1
1	235239088	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0909091
1	235239107	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.12
1	235239147	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.142857
1	235239148	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.142857
1	235257718	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.153846
1	235257737	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.363636
1	235300842	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.25
1	235300854	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.1875
1	235300868	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.214286
1	235300874	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.333333
1	235300910	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.1
1	235300916	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.208333
1	235300943	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0714286
1	235301128	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.166667
1	235301132	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.7
1	235301159	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.105263
1	235301161	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.157895
1	235301282	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.366667
1	235301293	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.636364
1	235301294	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.176471
1	235301316	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0625
1	235301320	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	1
1	235301321	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	1
1	235301358	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.153846
1	235301365	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.304348
1	235301371	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.227273
1	235301372	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.217391
1	235301381	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0645161
1	235301414	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.65
1	235301423	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.456522
1	235301430	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.163265
1	235301439	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.037037
1	235301482	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0327869
1	235301503	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.785714
1	235301506	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0425532
1	235301521	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0384615
1	235301622	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.04
1	235301665	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.333333
1	235301670	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.5
1	235301682	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.159091
1	235301714	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.15
1	235301731	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.08
1	235301811	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.105263
1	235301852	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.176471
1	235303195	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.2
1	235307941	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.125
1	235307967	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0571429
1	235307968	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.485714
1	235308162	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0588235
1	235308250	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	1
1	235308281	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.111111
1	235308320	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.16129
1	235308338	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.666667
1	235308357	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.263158
1	235308358	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.111111
1	235318210	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0909091
1	235318219	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.24
1	235318234	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0465116
1	235318261	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0769231
1	235318273	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.121951
1	235318274	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.522727
1	235318291	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0789474
1	235318300	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.54
1	235318313	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.191176
1	235318314	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.102941
1	235318343	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0833333
1	235318344	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.03125
1	235318377	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0545455
1	235318392	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	1
1	235318393	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0545455
1	235318427	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0322581
1	235323113	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0833333
1	235323133	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0740741
1	235323166	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.115385
1	235323202	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.0952381
1	235323243	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.2
1	235323260	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intergenic	.	.	Alu	0.214286
1	236237231	A->G	-	ENSG00000086619	ERO1B	protein_coding	Intergenic	.	.	Alu	0.2
2	237707312	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.588235
2	237707326	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.3125
2	237707339	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.166667
2	237707351	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.555556
2	237707358	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.444444
2	237707429	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.25
2	237707437	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.159091
2	237707438	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.0681818
2	237707445	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.0425532
2	237741748	A->G	+	ENSG00000124831	LRRFIP1	protein_coding	Intergenic	.	.	Alu	0.0512821
2	238184693	A->G	-	ENSG00000132323	ILKAP	protein_coding	Intergenic	.	.	Alu	0.142857
2	241322422	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.1875
2	241322528	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0769231
2	241326811	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0833333
2	241326827	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0588235
2	241326834	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.108108
2	241326842	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0810811
2	241326890	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0909091
2	241326909	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.0625
2	241326992	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.21875
2	241326993	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.25
2	241327849	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.25
2	241327850	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.25
2	241327852	A->G	+	ENSG00000168385	2-Sep	protein_coding	Intergenic	.	.	Alu	0.181818
1	243246299	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.0952381
1	243246451	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.25
1	243246504	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.166667
1	243246513	A->G	-	ENSG00000143702	CEP170	protein_coding	Intergenic	.	.	Alu	0.285714
1	243267122	A->G	+	ENSG00000054282	SDCCAG8	protein_coding	Intergenic	.	.	Alu	1
1	243798188	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.25
1	243798196	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.153846
1	243798198	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	0.2
1	243798374	A->G	-	ENSG00000117020	AKT3	protein_coding	Intergenic	.	.	Alu	1
1	245104425	A->G	+	ENSG00000203666	EFCAB2	protein_coding	Intergenic	.	.	Alu	0.272727
1	245127382	A->G	+	.	.	.	Intergenic	.	.	Alu	0.136364
1	245127413	A->G	+	.	.	.	Intergenic	.	.	Alu	0.666667
1	246288256	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.416667
1	246288277	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.153846
1	246288278	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.153846
1	246288281	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.125
1	246288287	A->G	-	ENSG00000185420	SMYD3	protein_coding	Intergenic	.	.	Alu	0.125
1	246568032	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.3
1	246644295	A->G	+	ENSG00000162852	CNST	protein_coding	Intergenic	.	.	Alu	0.214286
1	246892344	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.153846
1	246892418	A->G	-	ENSG00000153207	AHCTF1	protein_coding	Intergenic	.	.	Alu	0.166667
16	1322390	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.826087
16	1322403	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.423077
16	1322602	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.166667
16	1322647	A->G	+	ENSG00000103275	UBE2I	protein_coding	Intron	.	.	Alu	0.1875
7	1579362	A->G	+	ENSG00000230487	PSMG3-AS1	lincRNA	Intron	.	.	Alu	1
16	2098853	A->G	-	ENSG00000008710	PKD1	protein_coding	Intron	.	.	Alu	1
19	4450131	A->G	+	ENSG00000280239	AC011498.7	TEC	Intron	.	.	Alu	0.133333
19	4450504	A->G	+	ENSG00000280239	AC011498.7	TEC	Intron	.	.	Alu	0.166667
19	4450595	A->G	+	ENSG00000280239	AC011498.7	TEC	Intron	.	.	Alu	0.0606061
6	6682828	A->G	+	ENSG00000261211	AL031123.2	lincRNA	Intron	.	.	Alu	1
6	7218984	A->G	+	ENSG00000124782	RREB1	protein_coding	Intron	.	.	Alu	0.15
17	7576181	A->G	+	ENSG00000161960	EIF4A1	protein_coding	Intron	.	.	Alu	0.0526316
12	8384407	A->G	-	ENSG00000226091	LINC00937	lincRNA	Intron	.	.	Alu	0.533333
12	8384419	A->G	-	ENSG00000226091	LINC00937	lincRNA	Intron	.	.	Alu	0.428571
19	8491968	A->G	-	ENSG00000133246	PRAM1	protein_coding	Intron	.	.	Alu	0.153846
3	9391432	A->G	-	ENSG00000206573	THUMPD3-AS1	antisense	Intron	.	.	Alu	0.105263
3	9827966	A->G	+	ENSG00000250151	ARPC4-TTLL3	protein_coding	Intron	.	.	Alu	0.363636
3	9827982	A->G	+	ENSG00000250151	ARPC4-TTLL3	protein_coding	Intron	.	.	Alu	0.25
3	9828021	A->G	+	ENSG00000250151	ARPC4-TTLL3	protein_coding	Intron	.	.	Alu	0.615385
3	9828062	A->G	+	ENSG00000250151	ARPC4-TTLL3	protein_coding	Intron	.	.	Alu	0.2
3	9987134	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.15625
3	9987135	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.6
3	9987139	A->G	+	ENSG00000180385	EMC3-AS1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.111111
19	10653070	A->G	-	ENSG00000267100	ILF3-DT	lincRNA	Intron	.	.	Alu	0.642857
19	10653073	A->G	-	ENSG00000267100	ILF3-DT	lincRNA	Intron	.	.	Alu	0.6
19	11850848	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	1
19	11850884	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	1
19	11850910	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.272727
19	11850924	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.153846
19	11850946	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.272727
19	11850997	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.181818
19	11851027	A->G	+	ENSG00000171291	ZNF439	protein_coding	Intron	.	.	Alu	0.0909091
19	12003412	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.166667
19	12003427	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.166667
19	12003436	A->G	+	ENSG00000219665	ZNF433-AS1	processed_transcript	Intron	.	.	Alu	0.4
18	12862440	A->G	-	ENSG00000175354	PTPN2	protein_coding	Intron	.	.	Alu	0.75
19	14707203	A->G	+	ENSG00000160961	ZNF333	protein_coding	Intron	.	.	Alu	0.5
19	14707204	A->G	+	ENSG00000160961	ZNF333	protein_coding	Intron	.	.	Alu	0.2
3	14944630	A->G	-	ENSG00000225733	FGD5-AS1	antisense	Intron	.	.	Alu	0.666667
9	15505106	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intron	.	.	Alu	0.166667
9	15505203	A->G	-	ENSG00000164985	PSIP1	protein_coding	Intron	.	.	Alu	0.454545
19	16610517	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.285714
19	16610524	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.125
19	16610529	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.538462
19	16610584	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.357143
19	16610585	A->G	-	ENSG00000279977	AC008764.10	TEC	Intron	.	.	Alu	0.5
19	17099207	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intron	.	.	Alu	0.181818
19	17099244	A->G	+	ENSG00000099331	MYO9B	protein_coding	Intron	.	.	Alu	0.142857
8	17927680	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.2
8	17927801	A->G	+	ENSG00000078674	PCM1	protein_coding	Intron	.	.	Alu	0.08
22	19450906	A->G	-	ENSG00000070010	UFD1	protein_coding	Intron	.	.	Alu	0.1875
22	19450918	A->G	-	ENSG00000070010	UFD1	protein_coding	Intron	.	.	Alu	0.125
19	21452101	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.1875
19	21452156	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.210526
19	21452160	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.210526
19	21452161	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.526316
19	21452173	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.125
19	21452223	A->G	-	ENSG00000269237	AC010615.4	protein_coding	Intron	.	.	Alu	0.181818
16	22419431	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.181818
16	22419467	A->G	-	ENSG00000257122	RRN3P3	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.153846
22	23658525	A->G	-	ENSG00000272578	AP000347.1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.181818
22	23658602	A->G	-	ENSG00000272578	AP000347.1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.428571
19	24080570	A->G	+	ENSG00000279425	AC092279.2	TEC	Intron	.	.	Alu	0.166667
19	24080656	A->G	+	ENSG00000279425	AC092279.2	TEC	Intron	.	.	Alu	0.181818
7	26208163	A->G	+	ENSG00000122565	CBX3	protein_coding	Intron	.	.	Alu	0.384615
22	26476441	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.636364
22	26476462	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.142857
22	26476479	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.25
22	26476511	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.2
22	26476514	A->G	-	ENSG00000100099	HPS4	protein_coding	Intron	.	.	Alu	0.272727
6	28123180	A->G	-	ENSG00000269293	ZSCAN16-AS1	antisense	Intron	.	.	Alu	0.117647
6	28123199	A->G	-	ENSG00000269293	ZSCAN16-AS1	antisense	Intron	.	.	Alu	0.166667
1	28509335	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.0555556
1	28509381	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.0263158
1	28509422	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.025641
1	28509425	A->G	+	ENSG00000180198	RCC1	protein_coding	Intron	.	.	Alu	0.0416667
10	28523105	A->G	-	ENSG00000254635	WAC-AS1	antisense	Intron	.	.	Alu	0.181818
17	28722449	A->G	+	ENSG00000198242	RPL23A	protein_coding	Intron	.	.	Alu	0.722222
1	29173168	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.133333
1	29173235	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.236842
1	29173252	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.0833333
1	29173276	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.222222
1	29173302	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.208333
1	29173349	A->G	-	ENSG00000116350	SRSF4	protein_coding	Intron	.	.	Alu	0.25
17	30772387	A->G	+	ENSG00000264538	SUZ12P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.153846
17	30863009	A->G	+	ENSG00000176208	ATAD5	protein_coding	Intron	.	.	Alu	0.153846
16	31123692	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.0869565
16	31123695	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.416667
16	31123697	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.0869565
16	31123712	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.153846
16	31123721	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.25
16	31123746	A->G	+	ENSG00000278133	AC135050.6	sense_intronic	Intron	.	.	Alu	0.2
17	31526850	A->G	+	ENSG00000131242	RAB11FIP4	protein_coding	Intron	.	.	Alu	0.181818
1	32781968	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.15
1	32781978	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.777778
1	32782078	A->G	-	ENSG00000134684	YARS	protein_coding	Intron	.	.	Alu	0.133333
20	34981665	A->G	+	ENSG00000078814	MYH7B	protein_coding	Intron	.	.	Alu	1
19	38844801	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.136364
19	38844809	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.26087
19	38844849	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.176471
19	38844891	A->G	-	ENSG00000269688	AC008982.2	sense_intronic	Intron	.	.	Alu	0.117647
3	39408965	A->G	+	ENSG00000168028	RPSA	protein_coding	Intron	.	.	Alu	0.615385
19	39491790	A->G	+	ENSG00000105197	TIMM50	protein_coding	Intron	.	.	Alu	0.727273
7	40049026	A->G	+	ENSG00000065883	CDK13	protein_coding	Intron	.	.	Alu	0.333333
7	40049028	A->G	+	ENSG00000065883	CDK13	protein_coding	Intron	.	.	Alu	0.266667
7	40049033	A->G	+	ENSG00000065883	CDK13	protein_coding	Intron	.	.	Alu	0.230769
19	40779622	A->G	+	ENSG00000268975	MIA-RAB4B	protein_coding	Intron	.	.	Alu	0.9
19	40779628	A->G	+	ENSG00000268975	MIA-RAB4B	protein_coding	Intron	.	.	Alu	0.9
19	40779632	A->G	+	ENSG00000268975	MIA-RAB4B	protein_coding	Intron	.	.	Alu	0.9
15	41298807	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.272727
15	41298823	A->G	+	ENSG00000247556	OIP5-AS1	processed_transcript	Intron	.	.	Alu	0.272727
17	41970430	A->G	-	ENSG00000173786	CNP	protein_coding	Intron	.	.	Alu	0.1
17	41970472	A->G	-	ENSG00000173786	CNP	protein_coding	Intron	.	.	Alu	0.3
17	41984442	A->G	-	ENSG00000168259	DNAJC7	protein_coding	Intron	.	.	Alu	0.166667
12	42355604	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.4
12	42355631	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.0819672
12	42355647	A->G	+	ENSG00000134283	PPHLN1	protein_coding	Intron	.	.	Alu	0.0266667
17	43226167	A->G	+	ENSG00000236383	LINC00854	protein_coding	Intron	.	.	Alu	0.166667
19	43893583	A->G	-	ENSG00000278917	AC006213.6	TEC	Intron	.	.	Alu	0.230769
1	44626828	A->G	+	ENSG00000187147	RNF220	protein_coding	Intron	.	.	Alu	0.461538
1	44626866	A->G	+	ENSG00000187147	RNF220	protein_coding	Intron	.	.	Alu	0.166667
17	45218329	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.166667
17	45218354	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.133333
17	45218359	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.153846
17	45218390	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.157895
17	45218399	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.176471
17	45218400	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.117647
17	45218426	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.153846
17	45218503	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.4
17	45218533	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.307692
17	45218536	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.307692
17	45219866	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.133333
17	45219915	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.166667
17	45219937	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.166667
17	45219947	A->G	-	ENSG00000267121	AC008105.3	antisense	Intron	.	.	Alu	0.25
13	45344861	A->G	+	ENSG00000170919	TPT1-AS1	processed_transcript	Intron	.	.	Alu	0.153846
13	45344908	A->G	+	ENSG00000170919	TPT1-AS1	processed_transcript	Intron	.	.	Alu	0.9
17	46049400	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intron	.	.	Alu	0.75
17	46049439	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intron	.	.	Alu	0.615385
17	46049440	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intron	.	.	Alu	0.307692
17	46049506	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intron	.	.	Alu	0.545455
17	46049507	A->G	-	ENSG00000120071	KANSL1	protein_coding	Intron	.	.	Alu	0.363636
17	47161742	A->G	-	ENSG00000262265	AC002558.3	sense_intronic	Intron	.	.	Alu	0.5
17	47161744	A->G	-	ENSG00000262265	AC002558.3	sense_intronic	Intron	.	.	Alu	0.5
11	47513991	A->G	-	ENSG00000270072	AC090559.2	sense_intronic	Intron	.	.	Alu	0.153846
17	47596068	A->G	+	ENSG00000141279	NPEPPS	protein_coding	Intron	.	.	Alu	0.263158
20	47685363	A->G	-	ENSG00000196562	SULF2	protein_coding	Intron	.	.	Alu	1
19	49804199	A->G	+	ENSG00000196961	AP2A1	protein_coding	Intron	.	.	Alu	0.153846
3	49962979	A->G	+	ENSG00000004534	RBM6	protein_coding	Intron	.	.	Alu	0.909091
15	50360993	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.388889
15	50360995	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.666667
15	50361015	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	1
15	50361245	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.166667
15	50367442	A->G	+	ENSG00000244879	GABPB1-AS1	antisense	Intron	.	.	Alu	0.2
17	51183332	A->G	-	ENSG00000279089	AC005839.1	TEC	Intron	.	.	Alu	0.4
8	51896013	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intron	.	.	Alu	0.0769231
8	51896014	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intron	.	.	Alu	0.137931
8	51896018	A->G	-	ENSG00000253475	AC103769.1	sense_intronic	Intron	.	.	Alu	0.148148
14	52721545	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.30303
14	52721546	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.484848
14	52721572	A->G	+	ENSG00000100519	PSMC6	protein_coding	Intron	.	.	Alu	0.111111
19	52927245	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intron	.	.	Alu	0.357143
19	52927255	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intron	.	.	Alu	0.181818
19	52927311	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intron	.	.	Alu	0.133333
19	52927312	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intron	.	.	Alu	0.125
19	52927321	A->G	-	ENSG00000213801	ZNF321P	transcribed_processed_pseudogene	Intron	.	.	Alu	0.285714
2	53870446	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0833333
2	53870512	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.105263
2	53870571	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.125
2	53870581	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.12
2	53870596	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.0869565
2	53870605	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.133333
2	53870635	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.166667
2	53870662	A->G	-	ENSG00000068878	PSME4	protein_coding	Intron	.	.	Alu	0.142857
14	55285230	A->G	+	ENSG00000178974	FBXO34	protein_coding	Intron	.	.	Alu	0.181818
4	55412131	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intron	.	.	Alu	0.0769231
4	55412140	A->G	+	ENSG00000134851	TMEM165	protein_coding	Intron	.	.	Alu	0.148148
18	55551040	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.25
18	55551041	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.133333
18	55551081	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.0909091
18	55551082	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.5
18	55551132	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.5
18	55551138	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.4
18	55551148	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.176471
18	55551172	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.263158
18	55551187	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.176471
18	55551201	A->G	-	ENSG00000196628	TCF4	protein_coding	Intron	.	.	Alu	0.142857
2	55645135	A->G	-	ENSG00000138035	PNPT1	protein_coding	Intron	.	.	Alu	0.9375
2	55645162	A->G	-	ENSG00000138035	PNPT1	protein_coding	Intron	.	.	Alu	1
6	57116430	A->G	+	ENSG00000112200	ZNF451	protein_coding	Intron	.	.	Alu	0.235294
19	57870959	A->G	+	ENSG00000204514	ZNF814	protein_coding	Intron	.	.	Alu	0.111111
11	62887873	A->G	+	ENSG00000168003	SLC3A2	protein_coding	Intron	.	.	Alu	0.473684
12	64629949	A->G	+	ENSG00000225195	AC078962.1	sense_intronic	Intron	.	.	Alu	0.363636
14	64756454	A->G	+	ENSG00000070182	SPTB	protein_coding	Intron	.	.	Alu	1
17	64782748	A->G	-	ENSG00000214176	PLEKHM1P1	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.272727
11	65439993	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.133333
11	65440055	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.25
11	65441347	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.428571
11	65441384	A->G	+	ENSG00000245532	NEAT1	lincRNA	Intron	.	.	Alu	0.388889
17	67355343	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.333333
17	67355365	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.133333
17	67355371	A->G	-	ENSG00000197170	PSMD12	protein_coding	Intron	.	.	Alu	0.285714
17	67956849	A->G	+	ENSG00000279573	AC134407.2	TEC	Intron	.	.	Alu	0.1875
12	71774192	A->G	+	ENSG00000080371	RAB21	protein_coding	Intron	.	.	Alu	0.285714
12	71774215	A->G	+	ENSG00000080371	RAB21	protein_coding	Intron	.	.	Alu	0.2
X	73127189	A->G	-	ENSG00000204118	NAP1L6	transcribed_processed_pseudogene	Intron	.	.	Alu	0.363636
2	73457984	A->G	+	ENSG00000230002	ALMS1-IT1	sense_intronic	Intron	.	.	Alu	0.307692
14	74294082	A->G	-	ENSG00000258559	AC005519.1	sense_overlapping	Intron	.	.	Alu	0.166667
7	74883198	A->G	-	ENSG00000277072	STAG3L2	transcribed_unprocessed_pseudogene	Intron	.	.	Alu	0.0909091
17	75208318	A->G	+	ENSG00000125450	NUP85	protein_coding	Intron	.	.	Alu	0.133333
17	75208324	A->G	+	ENSG00000125450	NUP85	protein_coding	Intron	.	.	Alu	0.5
17	75208389	A->G	+	ENSG00000125450	NUP85	protein_coding	Intron	.	.	Alu	0.357143
16	75394792	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.181818
16	75394807	A->G	-	ENSG00000153774	CFDP1	protein_coding	Intron	.	.	Alu	0.4
18	79086325	A->G	+	ENSG00000279416	AC099689.1	TEC	Intron	.	.	Alu	0.2
18	79086329	A->G	+	ENSG00000279416	AC099689.1	TEC	Intron	.	.	Alu	0.2
18	79086333	A->G	+	ENSG00000279416	AC099689.1	TEC	Intron	.	.	Alu	0.2
18	79086393	A->G	+	ENSG00000279416	AC099689.1	TEC	Intron	.	.	Alu	0.111111
17	81847826	A->G	-	ENSG00000185624	P4HB	protein_coding	Intron	.	.	Alu	0.4
16	89516852	A->G	+	ENSG00000197912	SPG7	protein_coding	Intron	.	.	Alu	1
16	89516853	A->G	+	ENSG00000197912	SPG7	protein_coding	Intron	.	.	Alu	0.142857
14	91251489	A->G	-	ENSG00000119714	GPR68	protein_coding	Intron	.	.	Alu	1
14	91251512	A->G	-	ENSG00000119714	GPR68	protein_coding	Intron	.	.	Alu	1
14	91251522	A->G	-	ENSG00000119714	GPR68	protein_coding	Intron	.	.	Alu	1
1	93337903	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.2
1	93337965	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.666667
1	93337969	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0508475
1	93337979	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.666667
1	93337997	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0625
1	93338001	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0789474
1	93338010	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0444444
1	93338028	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0638298
1	93338054	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0714286
1	93338065	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0714286
1	93338073	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0571429
1	93338078	A->G	-	ENSG00000223745	CCDC18-AS1	processed_transcript	Intron	.	.	Alu	0.0833333
8	98043194	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.2
8	98043199	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0487805
8	98043203	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.128205
8	98043209	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.684211
8	98043224	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.285714
8	98043255	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0526316
8	98043264	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	1
8	98043265	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	1
8	98043291	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0551181
8	98043294	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0225564
8	98043295	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0559441
8	98043304	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0650888
8	98043314	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.148936
8	98043319	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.179775
8	98043320	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.0225989
8	98043327	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.04375
8	98043657	A->G	-	ENSG00000156482	RPL30	protein_coding	Intron	.	.	Alu	0.166667
X	101393003	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.214286
X	101393016	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.153846
X	101393026	A->G	+	ENSG00000241343	RPL36A	protein_coding	Intron	.	.	Alu	0.133333
4	102810546	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.1
4	102810578	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.1
4	102810582	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.157895
4	102810583	A->G	-	ENSG00000109332	UBE2D3	protein_coding	Intron	.	.	Alu	0.157895
14	103682416	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.16
14	103682429	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.45
14	103682430	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.47619
14	103682489	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.185185
14	103682499	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.0909091
14	103682524	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.210526
14	103682538	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.176471
14	103682551	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.692308
14	103682554	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.153846
14	103682565	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.1875
14	103682586	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.368421
14	103682604	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	1
14	103682605	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.133333
14	103682606	A->G	+	ENSG00000126214	KLC1	protein_coding	Intron	.	.	Alu	0.428571
8	108226291	A->G	-	ENSG00000104408	EIF3E	protein_coding	Intron	.	.	Alu	0.2
1	109203622	A->G	+	ENSG00000116299	KIAA1324	protein_coding	Intron	.	.	Alu	0.9375
1	111686570	A->G	+	ENSG00000197852	INKA2	protein_coding	Intron	.	.	Alu	0.592593
1	111686584	A->G	+	ENSG00000197852	INKA2	protein_coding	Intron	.	.	Alu	0.32
13	113276959	A->G	-	ENSG00000232662	LDHBP1	processed_pseudogene	Intron	.	.	Alu	1
13	114287444	A->G	+	ENSG00000169062	UPF3A	protein_coding	Intron	.	.	Alu	0.181818
12	116181193	A->G	-	ENSG00000258337	AC130895.1	sense_intronic	Intron	.	.	Alu	0.473684
7	116888687	A->G	+	ENSG00000198898	CAPZA2	protein_coding	Intron	.	.	Alu	0.333333
11	117159796	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intron	.	.	Alu	0.478261
11	117159811	A->G	+	ENSG00000168092	PAFAH1B2	protein_coding	Intron	.	.	Alu	0.227273
1	119150872	A->G	+	ENSG00000231365	AL359915.2	antisense	Intron	.	.	Alu	0.363636
12	120526918	A->G	-	ENSG00000110871	COQ5	protein_coding	Intron	.	.	Alu	1
12	120526920	A->G	-	ENSG00000110871	COQ5	protein_coding	Intron	.	.	Alu	1
12	122275482	A->G	+	ENSG00000130779	CLIP1	protein_coding	Intron	.	.	Alu	1
12	122875183	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.2
12	122883618	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.217391
12	122883624	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.473684
12	122883745	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.166667
12	122883751	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.4
12	122883774	A->G	-	ENSG00000280138	AC027290.2	TEC	Intron	.	.	Alu	0.2
8	123344552	A->G	-	ENSG00000156802	ATAD2	protein_coding	Intron	.	.	Alu	0.0869565
11	125087809	A->G	-	ENSG00000134955	SLC37A2	protein_coding	Intron	.	.	Alu	0.909091
9	129504165	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.3
9	129504233	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.214286
9	129504234	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.25
9	129504303	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.176471
9	129504304	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.705882
9	129504344	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.105263
9	129504345	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.473684
9	129504374	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.2
9	129504376	A->G	+	ENSG00000204054	LINC00963	processed_transcript	Intron	.	.	Alu	0.4
12	131897824	A->G	+	ENSG00000279283	AC131009.4	TEC	Intron	.	.	Alu	0.181818
3	132681495	A->G	-	ENSG00000113971	NPHP3	protein_coding	Intron	.	.	Alu	0.153846
3	132681541	A->G	-	ENSG00000113971	NPHP3	protein_coding	Intron	.	.	Alu	0.181818
8	132810245	A->G	-	ENSG00000129292	PHF20L1	protein_coding	Intron	.	.	Alu	1
9	137616159	A->G	+	ENSG00000283411	AL590627.2	processed_transcript	Intron	.	.	Alu	0.8
5	140535795	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.0967742
5	140535824	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.0909091
5	140535829	A->G	+	ENSG00000131503	ANKHD1	protein_coding	Intron	.	.	Alu	0.0967742
5	148389779	A->G	+	ENSG00000145868	FBXO38	protein_coding	Intron	.	.	Alu	0.5
4	151012973	A->G	-	ENSG00000198589	LRBA	protein_coding	Intron	.	.	Alu	0.428571
1	153964772	A->G	-	ENSG00000143570	SLC39A1	protein_coding	Intron	.	.	Alu	1
1	153964781	A->G	-	ENSG00000143570	SLC39A1	protein_coding	Intron	.	.	Alu	1
1	153964791	A->G	-	ENSG00000143570	SLC39A1	protein_coding	Intron	.	.	Alu	1
1	155670742	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.133333
1	155670743	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.2
1	155670847	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.2
1	155670849	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.3
1	155670869	A->G	-	ENSG00000163374	YY1AP1	protein_coding	Intron	.	.	Alu	0.25
1	155784421	A->G	-	ENSG00000116580	GON4L	protein_coding	Intron	.	.	Alu	0.666667
1	158199187	A->G	+	ENSG00000176320	AL138899.1	lincRNA	Intron	.	.	Alu	0.142857
1	158199196	A->G	+	ENSG00000176320	AL138899.1	lincRNA	Intron	.	.	Alu	0.384615
1	158199202	A->G	+	ENSG00000176320	AL138899.1	lincRNA	Intron	.	.	Alu	0.363636
4	158679888	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.266667
4	158679895	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.25
4	158679974	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.125
4	158680035	A->G	+	ENSG00000171503	ETFDH	protein_coding	Intron	.	.	Alu	0.125
2	197301059	A->G	-	ENSG00000236977	ANKRD44-IT1	sense_intronic	Intron	.	.	Alu	0.0952381
1	201533470	A->G	+	ENSG00000224536	AC096677.1	antisense	Intron	.	.	Alu	0.521739
1	201533496	A->G	+	ENSG00000224536	AC096677.1	antisense	Intron	.	.	Alu	0.111111
1	211358585	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.25
1	211358586	A->G	+	ENSG00000082512	TRAF5	protein_coding	Intron	.	.	Alu	0.333333
1	224269779	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.181818
1	224269781	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.0952381
1	224269835	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.454545
1	224269839	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.2
1	224269878	A->G	-	ENSG00000143748	NVL	protein_coding	Intron	.	.	Alu	0.181818
2	233141298	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.875
2	233141311	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.533333
2	233141312	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.875
2	233141390	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0833333
2	233141420	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.136364
2	233141446	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.15
2	233141473	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.2
2	233141487	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.666667
2	233141488	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.133333
2	233141549	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.0666667
2	233205224	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.222222
2	233205247	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	1
2	233205277	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.1875
2	233205410	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.9
2	233205436	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.181818
2	233205461	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.631579
2	233205462	A->G	+	ENSG00000168918	INPP5D	protein_coding	Intron	.	.	Alu	0.47619
1	235180332	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intron	.	.	Alu	0.2
1	235180333	A->G	-	ENSG00000054267	ARID4B	protein_coding	Intron	.	.	Alu	0.6
X	302631	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.125
X	302703	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.214286
X	302835	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.0909091
X	302836	A->G	+	ENSG00000182378	PLCXD1	protein_coding	three_prime_utr	.	.	Alu	0.130435
18	318161	A->G	-	ENSG00000158270	COLEC12	protein_coding	three_prime_utr	.	.	Alu	0.2
18	318176	A->G	-	ENSG00000158270	COLEC12	protein_coding	three_prime_utr	.	.	Alu	0.666667
18	318177	A->G	-	ENSG00000158270	COLEC12	protein_coding	three_prime_utr	.	.	Alu	0.666667
18	318185	A->G	-	ENSG00000158270	COLEC12	protein_coding	three_prime_utr	.	.	Alu	0.6
8	1781299	A->G	+	ENSG00000182372	CLN8	protein_coding	three_prime_utr	.	.	Alu	0.2
17	2417277	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.290323
17	2417334	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.2
17	2417351	A->G	-	ENSG00000127804	METTL16	protein_coding	three_prime_utr	.	.	Alu	0.615385
7	2434556	A->G	+	ENSG00000136213	CHST12	protein_coding	three_prime_utr	.	.	Alu	0.25
4	2938420	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.3
4	2938437	A->G	-	ENSG00000087269	NOP14	protein_coding	three_prime_utr	.	.	Alu	0.5625
2	3545012	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.4375
2	3545017	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.277778
2	3545048	A->G	-	ENSG00000171865	RNASEH1	protein_coding	three_prime_utr	.	.	Alu	0.230769
20	3870544	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.315789
20	3870545	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.210526
20	3870562	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.904762
20	3870567	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.210526
20	3870574	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.0952381
20	3870590	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.208333
20	3870614	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.0909091
20	3870629	A->G	+	ENSG00000088888	MAVS	protein_coding	three_prime_utr	.	.	Alu	0.35
16	4750549	A->G	-	ENSG00000103199	ZNF500	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	4750627	A->G	-	ENSG00000103199	ZNF500	protein_coding	three_prime_utr	.	.	Alu	0.3
16	4750833	A->G	-	ENSG00000103199	ZNF500	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	4750853	A->G	-	ENSG00000103199	ZNF500	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	4838728	A->G	-	ENSG00000105355	PLIN3	protein_coding	three_prime_utr	.	.	Alu	0.0294118
7	5389512	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	1
7	5389522	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	1
7	5389523	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	1
7	5389531	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.142857
7	5389692	A->G	-	ENSG00000182095	TNRC18	protein_coding	three_prime_utr	.	.	Alu	0.4
1	9271117	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.470588
1	9271125	A->G	+	ENSG00000049239	H6PD	protein_coding	three_prime_utr	.	.	Alu	0.470588
19	9528126	A->G	-	ENSG00000130818	ZNF426	protein_coding	three_prime_utr	.	.	Alu	0.1
19	9562232	A->G	-	ENSG00000197961	ZNF121	protein_coding	three_prime_utr	.	.	Alu	0.0714286
19	9562237	A->G	-	ENSG00000197961	ZNF121	protein_coding	three_prime_utr	.	.	Alu	0.107143
19	9562243	A->G	-	ENSG00000197961	ZNF121	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	9562267	A->G	-	ENSG00000197961	ZNF121	protein_coding	three_prime_utr	.	.	Alu	0.818182
19	9562276	A->G	-	ENSG00000197961	ZNF121	protein_coding	three_prime_utr	.	.	Alu	0.75
19	9648529	A->G	-	ENSG00000171466	ZNF562	protein_coding	three_prime_utr	.	.	Alu	0.2
3	9836048	A->G	+	ENSG00000214021	TTLL3	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	9836170	A->G	+	ENSG00000214021	TTLL3	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	10151940	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.125
3	10151981	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.125
3	10152048	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.216216
3	10152049	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.162162
3	10152104	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0571429
3	10152182	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0740741
3	10152189	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.541667
3	10152190	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.333333
3	10152192	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.291667
3	10152197	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0714286
3	10152206	A->G	+	ENSG00000134086	VHL	protein_coding	three_prime_utr	.	.	Alu	0.0625
1	10458631	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.12
1	10458635	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0909091
1	10458663	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.0869565
1	10458740	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.130435
1	10458774	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	10458804	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	10458816	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.2
1	10460658	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.25
1	10460668	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.285714
1	10460678	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	10460801	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	10460947	A->G	-	ENSG00000160049	DFFA	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	10930130	A->G	+	ENSG00000142444	TIMM29	protein_coding	three_prime_utr	.	.	Alu	0.166667
19	10933380	A->G	+	ENSG00000142444	TIMM29	protein_coding	three_prime_utr	.	.	Alu	0.147059
1	11029741	A->G	+	ENSG00000277726	AL109811.4	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	11029756	A->G	+	ENSG00000277726	AL109811.4	protein_coding	three_prime_utr	.	.	Alu	0.272727
19	11145950	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.111111
19	11145996	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.34375
19	11146006	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.0606061
19	11146010	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.0555556
19	11146013	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.5
19	11146049	A->G	-	ENSG00000161888	SPC24	protein_coding	three_prime_utr	.	.	Alu	0.666667
8	11842699	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.111111
8	11842704	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.210526
8	11842709	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.111111
8	11842722	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.28
8	11842734	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.111111
8	11842742	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.137931
8	11842752	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.416667
8	11842775	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.277778
8	11842796	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.363636
8	11842801	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.153846
8	11842814	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.125
8	11842815	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.3125
8	11842818	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.1875
8	11842849	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	11842854	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.4
8	11842864	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.214286
8	11842879	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.125
8	11842887	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.214286
8	11842909	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.181818
8	11842910	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.363636
8	11843017	A->G	-	ENSG00000164733	CTSB	protein_coding	three_prime_utr	.	.	Alu	0.416667
10	12121100	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.153846
10	12121127	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.2
10	12121207	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.105263
10	12121208	A->G	+	ENSG00000181192	DHTKD1	protein_coding	three_prime_utr	.	.	Alu	0.111111
19	12348997	A->G	+	ENSG00000198342	ZNF442	protein_coding	three_prime_utr	.	.	Alu	1
19	12349000	A->G	+	ENSG00000198342	ZNF442	protein_coding	three_prime_utr	.	.	Alu	1
19	12630099	A->G	+	ENSG00000173875	ZNF791	protein_coding	three_prime_utr	.	.	Alu	0.111111
19	12630115	A->G	+	ENSG00000173875	ZNF791	protein_coding	three_prime_utr	.	.	Alu	0.0952381
19	12630203	A->G	+	ENSG00000173875	ZNF791	protein_coding	three_prime_utr	.	.	Alu	0.0909091
19	13773913	A->G	+	ENSG00000037757	MRI1	protein_coding	three_prime_utr	.	.	Alu	0.4
19	16158414	A->G	+	ENSG00000196684	HSH2D	protein_coding	three_prime_utr	.	.	Alu	0.0225564
19	16158454	A->G	+	ENSG00000196684	HSH2D	protein_coding	three_prime_utr	.	.	Alu	0.0337079
19	16645723	A->G	-	ENSG00000268790	AC008764.4	protein_coding	three_prime_utr	.	.	Alu	0.111111
19	16645727	A->G	-	ENSG00000268790	AC008764.4	protein_coding	three_prime_utr	.	.	Alu	0.238095
19	16645760	A->G	-	ENSG00000268790	AC008764.4	protein_coding	three_prime_utr	.	.	Alu	0.2
22	17110243	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.166667
22	17110367	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.117647
22	17110377	A->G	+	ENSG00000177663	IL17RA	protein_coding	three_prime_utr	.	.	Alu	0.125
4	17801396	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.7
4	17803117	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.2
4	17803121	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.133333
4	17803162	A->G	-	ENSG00000163257	DCAF16	protein_coding	three_prime_utr	.	.	Alu	0.117647
22	18089840	A->G	-	ENSG00000215193	PEX26	protein_coding	three_prime_utr	.	.	Alu	1
19	18368012	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.533333
19	18368048	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.117647
19	18368067	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.25
19	18368074	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	18368075	A->G	+	ENSG00000130517	PGPEP1	protein_coding	three_prime_utr	.	.	Alu	0.615385
19	18992237	A->G	+	ENSG00000064607	SUGP2	protein_coding	three_prime_utr	.	.	Alu	0.9
1	19259943	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.363636
1	19259961	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.454545
1	19259964	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.909091
1	19260025	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.153846
1	19260026	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.230769
1	19260038	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.533333
1	19260047	A->G	+	ENSG00000053372	MRTO4	protein_coding	three_prime_utr	.	.	Alu	0.133333
19	19681061	A->G	+	ENSG00000181896	ZNF101	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	20651964	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.5
1	20652030	A->G	-	ENSG00000244038	DDOST	protein_coding	three_prime_utr	.	.	Alu	0.0869565
19	21122456	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.2
19	21122463	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.2
19	21122489	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	21122498	A->G	+	ENSG00000160352	ZNF714	protein_coding	three_prime_utr	.	.	Alu	0.214286
19	21187379	A->G	+	ENSG00000196705	ZNF431	protein_coding	three_prime_utr	.	.	Alu	0.142857
16	21640575	A->G	+	ENSG00000140749	IGSF6	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	21806237	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0833333
19	21806242	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.08
19	21806265	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.0952381
19	21806298	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.15
19	21806437	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.230769
19	21806438	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.307692
19	21806440	A->G	-	ENSG00000198521	ZNF43	protein_coding	three_prime_utr	.	.	Alu	0.5
X	24077168	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.105263
X	24077169	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.125
X	24077203	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.08
X	24077208	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0740741
X	24077308	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0487805
X	24077327	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.0833333
X	24077328	A->G	+	ENSG00000130741	EIF2S3	protein_coding	three_prime_utr	.	.	Alu	0.125
14	24167346	A->G	+	ENSG00000259529	AL136295.5	protein_coding	three_prime_utr	.	.	Alu	0.0952381
6	24839991	A->G	-	ENSG00000111913	RIPOR2	protein_coding	three_prime_utr	.	.	Alu	0.117647
1	26876288	A->G	-	ENSG00000142751	GPN2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	26876298	A->G	-	ENSG00000142751	GPN2	protein_coding	three_prime_utr	.	.	Alu	0.454545
1	28715960	A->G	+	ENSG00000162419	GMEB1	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	28966402	A->G	+	ENSG00000176953	NFATC2IP	protein_coding	three_prime_utr	.	.	Alu	0.0434783
15	29265473	A->G	-	ENSG00000185115	NSMCE3	protein_coding	three_prime_utr	.	.	Alu	1
16	29665336	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.2
16	29666351	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0357143
16	29666352	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0340909
16	29667523	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.9
16	29667717	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29667731	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.214286
16	29668884	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.234043
16	29668892	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.6
16	29668893	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.106383
16	29668909	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0526316
16	29668913	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29668918	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	29668946	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.733333
16	29668962	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.533333
16	29668966	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	29668996	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29668998	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29669001	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29669005	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.25
16	29669027	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.55
16	29669037	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1
16	29669045	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.24
16	29669069	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.111111
16	29669073	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125
16	29669096	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.285714
16	29669097	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.263158
16	29669101	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	29669401	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.636364
16	29669410	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.470588
16	29669411	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669463	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29669475	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669601	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.555556
16	29669603	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0277778
16	29669616	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.181818
16	29669624	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.875
16	29669625	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.6
16	29669630	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0454545
16	29669633	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0294118
16	29669660	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0833333
16	29669670	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	1
16	29669678	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29669679	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.75
16	29669681	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.171429
16	29669684	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0952381
16	29669690	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0869565
16	29669703	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0350877
16	29669704	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0357143
16	29669717	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.046875
16	29669719	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.03125
16	29669726	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0526316
16	29669729	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.12069
16	29669755	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.516129
16	29669756	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.366667
16	29669782	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.2
16	29669817	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.35
16	29669821	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.2
16	29669826	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.130435
16	29669828	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0869565
16	29669831	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.56
16	29669859	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.225806
16	29669866	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.114286
16	29669867	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.258065
16	29669948	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0416667
16	29669959	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.111111
16	29669967	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.4
16	29669977	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.1
16	29669982	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.470588
16	29669985	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0298507
16	29670010	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.108108
16	29670018	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.108108
16	29670046	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0666667
16	29670047	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.113636
16	29670050	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29670054	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0925926
16	29670060	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29670086	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0277778
16	29670090	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.333333
16	29670091	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0769231
16	29670099	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.109091
16	29670108	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.137255
16	29670123	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0980392
16	29670137	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.418605
16	29670139	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29670153	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.5
16	29670177	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.666667
16	29670180	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0769231
16	29670186	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0645161
16	29670201	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.176471
16	29670230	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0434783
16	29670232	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.244444
16	29670238	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.261905
16	29670239	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.390244
16	29670244	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125
16	29670289	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.241379
16	29670290	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.103448
16	29670305	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0769231
16	29670312	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.115385
16	29670313	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.12
16	29670329	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0769231
16	29670342	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.107143
16	29670346	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.103448
16	29670368	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.153846
16	29670369	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.15
16	29670374	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.125
16	29670378	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.131579
16	29670395	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0512821
16	29670401	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.047619
16	29670421	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0731707
16	29670430	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.235294
16	29670439	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.240741
16	29670449	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.0491803
16	29670471	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.214286
16	29670477	A->G	+	ENSG00000197471	SPN	protein_coding	three_prime_utr	.	.	Alu	0.025
6	30493025	A->G	+	ENSG00000204592	HLA-E	protein_coding	three_prime_utr	.	.	Alu	0.046875
6	30493183	A->G	+	ENSG00000204592	HLA-E	protein_coding	three_prime_utr	.	.	Alu	0.0283912
6	30493243	A->G	+	ENSG00000204592	HLA-E	protein_coding	three_prime_utr	.	.	Alu	0.0243902
18	32068940	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.12
18	32068941	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.208333
18	32068949	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.125
18	32068964	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.12
18	32068967	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0869565
18	32068976	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.185185
18	32068979	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.5
18	32068984	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.125
18	32069036	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.333333
18	32069039	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.148148
18	32069040	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0740741
18	32069041	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.0769231
18	32069042	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.111111
18	32069054	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.16
18	32069080	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.142857
18	32069081	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.190476
18	32069140	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.454545
18	32069158	A->G	+	ENSG00000101695	RNF125	protein_coding	three_prime_utr	.	.	Alu	0.148148
2	32307656	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	32307664	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.111111
2	32307672	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	32307740	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.3125
2	32307741	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.2
2	32307771	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	1
2	32307774	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.230769
2	32307775	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.153846
2	32307796	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.210526
2	32307809	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.421053
2	32307814	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	32307818	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.35
2	32307880	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.666667
2	32307881	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.214286
2	32312277	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	32312311	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.142857
2	32312322	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.583333
2	32312327	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.2
2	32312367	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.846154
2	32312377	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	32312409	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.25
2	32313627	A->G	+	ENSG00000119820	YIPF4	protein_coding	three_prime_utr	.	.	Alu	0.181818
13	32399024	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.272727
13	32399046	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.133333
13	32399051	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.117647
13	32399052	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.666667
13	32399063	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.705882
13	32399068	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.166667
13	32399086	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.111111
13	32399091	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.111111
13	32399925	A->G	+	ENSG00000139618	BRCA2	protein_coding	three_prime_utr	.	.	Alu	0.2
13	32510584	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.333333
13	32510636	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.2
13	32510637	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.2
13	32510702	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.181818
13	32510703	A->G	-	ENSG00000244754	N4BP2L2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	32683090	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.454545
1	32683188	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.230769
1	32683252	A->G	+	ENSG00000162521	RBBP4	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	32744552	A->G	+	ENSG00000087470	DNM1L	protein_coding	three_prime_utr	.	.	Alu	0.928571
12	32744584	A->G	+	ENSG00000087470	DNM1L	protein_coding	three_prime_utr	.	.	Alu	0.928571
6	33005380	A->G	-	ENSG00000204252	HLA-DOA	protein_coding	three_prime_utr	.	.	Alu	0.181818
15	34231666	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.5
15	34231754	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.375
15	34231765	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.266667
15	34231773	A->G	-	ENSG00000140199	SLC12A6	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	35601274	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.166667
1	35601289	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	35601308	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.2
1	35602148	A->G	-	ENSG00000126067	PSMB2	protein_coding	three_prime_utr	.	.	Alu	0.181818
22	35661204	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.153846
22	35661214	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.785714
22	35661231	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.692308
22	35661237	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.9375
22	35661238	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.1875
22	35661247	A->G	+	ENSG00000221963	APOL6	protein_coding	three_prime_utr	.	.	Alu	0.785714
22	36266887	A->G	+	ENSG00000100342	APOL1	protein_coding	three_prime_utr	.	.	Alu	0.181818
22	36266900	A->G	+	ENSG00000100342	APOL1	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	36446369	A->G	-	ENSG00000186017	ZNF566	protein_coding	three_prime_utr	.	.	Alu	0.923077
2	37103288	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.352941
2	37103292	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.117647
2	37103293	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.235294
2	37103324	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0588235
2	37103333	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0967742
2	37103360	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.526316
2	37103363	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	37103364	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.277778
2	37103423	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.153846
2	37103468	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	37103469	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	37103471	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.583333
2	37103477	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.2
2	37104471	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0952381
2	37104484	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	37104497	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0666667
2	37104499	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0666667
2	37104502	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.09375
2	37104521	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	37104547	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0540541
2	37104568	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.0555556
2	37104593	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	37104602	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	37104607	A->G	-	ENSG00000055332	EIF2AK2	protein_coding	three_prime_utr	.	.	Alu	0.4
2	37202534	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.272727
2	37202547	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	37202590	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.263158
2	37202594	A->G	+	ENSG00000218739	CEBPZOS	protein_coding	three_prime_utr	.	.	Alu	0.235294
17	37610186	A->G	-	ENSG00000278053	DDX52	protein_coding	three_prime_utr	.	.	Alu	0.0952381
17	37610196	A->G	-	ENSG00000278053	DDX52	protein_coding	three_prime_utr	.	.	Alu	0.0740741
1	37861011	A->G	-	ENSG00000204084	INPP5B	protein_coding	three_prime_utr	.	.	Alu	0.2
22	39018748	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.114286
22	39018749	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.222222
22	39018767	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.275
22	39018895	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.136364
22	39018907	A->G	+	ENSG00000244509	APOBEC3C	protein_coding	three_prime_utr	.	.	Alu	0.5
3	40466407	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.333333
3	40466425	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.214286
3	40466426	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.4
3	40466434	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.4
3	40466452	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.692308
3	40466484	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.235294
3	40466485	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.1875
3	40466493	A->G	+	ENSG00000188846	RPL14	protein_coding	three_prime_utr	.	.	Alu	0.142857
19	41872626	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.2
19	41872643	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.2
19	41872774	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	1
19	41872775	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	1
19	41872801	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.0833333
19	41872804	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.28
19	41872816	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.388889
19	41872851	A->G	+	ENSG00000105372	RPS19	protein_coding	three_prime_utr	.	.	Alu	0.166667
6	42886943	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.230769
6	42889199	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	42889240	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.285714
6	42889245	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.666667
6	42889293	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.538462
6	42889342	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.181818
6	42889373	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.285714
6	42889398	A->G	+	ENSG00000146223	RPL7L1	protein_coding	three_prime_utr	.	.	Alu	0.173913
8	43020837	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.5
8	43020845	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.235294
8	43020846	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.5
8	43020872	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.153846
8	43020905	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.210526
8	43020915	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.3
8	43020925	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.25
8	43020981	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.294118
8	43021008	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.111111
8	43021022	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.136364
8	43021023	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	43021030	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.1
8	43021034	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.263158
8	43023059	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.307692
8	43023075	A->G	+	ENSG00000254673	AC110275.1	protein_coding	three_prime_utr	.	.	Alu	0.272727
17	43219595	A->G	+	ENSG00000184988	TMEM106A	protein_coding	three_prime_utr	.	.	Alu	0.272727
17	43219689	A->G	+	ENSG00000184988	TMEM106A	protein_coding	three_prime_utr	.	.	Alu	0.181818
17	43219715	A->G	+	ENSG00000184988	TMEM106A	protein_coding	three_prime_utr	.	.	Alu	0.176471
12	43788696	A->G	-	ENSG00000198001	IRAK4	protein_coding	three_prime_utr	.	.	Alu	1
17	44189854	A->G	-	ENSG00000168591	TMUB2	protein_coding	three_prime_utr	.	.	Alu	1
7	44835001	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.0689655
7	44835002	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.103448
7	44835056	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.0869565
7	44835063	A->G	-	ENSG00000105968	H2AFV	protein_coding	three_prime_utr	.	.	Alu	0.363636
19	45703697	A->G	+	ENSG00000011478	QPCTL	protein_coding	three_prime_utr	.	.	Alu	1
19	45703698	A->G	+	ENSG00000011478	QPCTL	protein_coding	three_prime_utr	.	.	Alu	0.214286
19	45703704	A->G	+	ENSG00000011478	QPCTL	protein_coding	three_prime_utr	.	.	Alu	0.333333
1	46364509	A->G	+	ENSG00000117481	NSUN4	protein_coding	three_prime_utr	.	.	Alu	0.125
8	47977073	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.142857
8	47977185	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.0588235
8	47977687	A->G	+	ENSG00000104738	MCM4	protein_coding	three_prime_utr	.	.	Alu	0.25
16	48353264	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.4
16	48353444	A->G	+	ENSG00000102910	LONP2	protein_coding	three_prime_utr	.	.	Alu	0.153846
X	48577960	A->G	+	ENSG00000102317	RBM3	protein_coding	three_prime_utr	.	.	Alu	0.0243902
X	48577961	A->G	+	ENSG00000102317	RBM3	protein_coding	three_prime_utr	.	.	Alu	0.0240964
12	49463266	A->G	+	ENSG00000123352	SPATS2	protein_coding	three_prime_utr	.	.	Alu	0.15
14	50326179	A->G	+	ENSG00000125375	ATP5S	protein_coding	three_prime_utr	.	.	Alu	0.272727
12	50931523	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.571429
12	50931528	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.153846
12	50931564	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.461538
12	50931568	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.3
12	50931590	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.3125
12	50931591	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.1875
12	50931607	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.411765
12	50931623	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.117647
12	50931636	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.352941
12	50931652	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.142857
12	50931657	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.333333
12	50931694	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.2
12	50931752	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.2
12	50931754	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.909091
12	50931800	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.0833333
12	50931812	A->G	+	ENSG00000185432	METTL7A	protein_coding	three_prime_utr	.	.	Alu	0.1875
15	51815097	A->G	+	ENSG00000128872	TMOD2	protein_coding	three_prime_utr	.	.	Alu	0.9
15	51815100	A->G	+	ENSG00000128872	TMOD2	protein_coding	three_prime_utr	.	.	Alu	0.9
19	52032551	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.545455
19	52032552	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.454545
19	52032617	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.6
19	52032708	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.181818
19	52032709	A->G	-	ENSG00000256087	ZNF432	protein_coding	three_prime_utr	.	.	Alu	0.333333
19	53875799	A->G	+	ENSG00000179820	MYADM	protein_coding	three_prime_utr	.	.	Alu	0.0405405
19	53875800	A->G	+	ENSG00000179820	MYADM	protein_coding	three_prime_utr	.	.	Alu	0.0441176
19	54353871	A->G	-	ENSG00000167613	LAIR1	protein_coding	three_prime_utr	.	.	Alu	0.181818
X	54560763	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.846154
X	54560777	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.380952
X	54560786	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.35
X	54560816	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.272727
X	54560907	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.769231
X	54560917	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.714286
X	54560919	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.6
X	54560920	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.6
X	54560960	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.157895
X	54560961	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.1
X	54560983	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0740741
X	54560992	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.961538
X	54560993	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.333333
X	54561000	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0740741
X	54561004	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0689655
X	54561017	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.103448
X	54561029	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.186047
X	54561061	A->G	+	ENSG00000130119	GNL3L	protein_coding	three_prime_utr	.	.	Alu	0.0298507
1	54639177	A->G	+	ENSG00000162390	ACOT11	protein_coding	three_prime_utr	.	.	Alu	0.272727
4	55960647	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.153846
4	55960669	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.153846
4	55960670	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	55960678	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.166667
4	55960718	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.181818
4	55960738	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	55960739	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.142857
4	55960747	A->G	+	ENSG00000174799	CEP135	protein_coding	three_prime_utr	.	.	Alu	0.153846
19	57507852	A->G	+	ENSG00000152439	ZNF773	protein_coding	three_prime_utr	.	.	Alu	0.230769
3	58318611	A->G	+	ENSG00000163684	RPP14	protein_coding	three_prime_utr	.	.	Alu	0.117647
17	59203486	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.9
17	59204694	A->G	+	ENSG00000068489	PRR11	protein_coding	three_prime_utr	.	.	Alu	0.0487805
2	65085768	A->G	+	ENSG00000011523	CEP68	protein_coding	three_prime_utr	.	.	Alu	0.952381
5	65668097	A->G	-	ENSG00000197860	SGTB	protein_coding	three_prime_utr	.	.	Alu	0.8
11	65775921	A->G	-	ENSG00000254470	AP5B1	protein_coding	three_prime_utr	.	.	Alu	0.125
11	68755439	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.149533
11	68755457	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.106061
11	68755462	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0465116
11	68755467	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0606061
11	68755538	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.5
11	68755548	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.333333
11	68755577	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0520833
11	68755579	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.02
11	68755580	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.227273
11	68755586	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0490196
11	68755587	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0392157
11	68755590	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.029703
11	68755593	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0210526
11	68755604	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.134146
11	68755612	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.4
11	68755614	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.263158
11	68755643	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0377358
11	68755646	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.038961
11	68755660	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.230769
11	68755681	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.147059
11	68755682	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0366972
11	68755690	A->G	-	ENSG00000110090	CPT1A	protein_coding	three_prime_utr	.	.	Alu	0.0267857
5	69210267	A->G	+	ENSG00000153044	CENPH	protein_coding	three_prime_utr	.	.	Alu	0.0740741
16	69327203	A->G	-	ENSG00000213380	COG8	protein_coding	three_prime_utr	.	.	Alu	0.272727
16	70161260	A->G	+	ENSG00000090857	PDPR	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	70248638	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	70248718	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.15
16	70248723	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.4
16	70248733	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.705882
16	70248751	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.3
16	70248816	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.266667
16	70248817	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.2
16	70248832	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	70248843	A->G	-	ENSG00000223496	EXOSC6	protein_coding	three_prime_utr	.	.	Alu	0.5
10	73249016	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.0869565
10	73249059	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.263158
10	73249083	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.142857
10	73249089	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.222222
10	73249097	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.1
10	73249118	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.185185
10	73249122	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.103448
10	73249197	A->G	-	ENSG00000182180	MRPS16	protein_coding	three_prime_utr	.	.	Alu	0.461538
14	74060242	A->G	-	ENSG00000119711	ALDH6A1	protein_coding	three_prime_utr	.	.	Alu	0.272727
14	74060281	A->G	-	ENSG00000119711	ALDH6A1	protein_coding	three_prime_utr	.	.	Alu	0.4
7	74231776	A->G	-	ENSG00000049541	RFC2	protein_coding	three_prime_utr	.	.	Alu	0.0606061
14	74736247	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.166667
14	74736261	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.25
14	74736362	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.181818
14	74736364	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.727273
14	74736372	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.230769
14	74736394	A->G	+	ENSG00000119616	FCF1	protein_coding	three_prime_utr	.	.	Alu	0.375
12	75496033	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.2
12	75496034	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.545455
12	75496100	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.578947
12	75496101	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.85
12	75496115	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.269231
12	75496132	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.171429
12	75496272	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.84375
12	75496273	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.214286
12	75496308	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.0909091
12	75496309	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.1
12	75496311	A->G	-	ENSG00000139278	GLIPR1	protein_coding	three_prime_utr	.	.	Alu	0.105263
16	75599197	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.133333
16	75599219	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.125
16	75599285	A->G	-	ENSG00000065457	ADAT1	protein_coding	three_prime_utr	.	.	Alu	0.153846
17	75889117	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.0833333
17	75889152	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.130435
17	75889167	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.0909091
17	75889326	A->G	-	ENSG00000141569	TRIM65	protein_coding	three_prime_utr	.	.	Alu	0.105263
X	77827478	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0606061
X	77827502	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.314286
X	77827509	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.117647
X	77827510	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.411765
X	77827514	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.075
X	77827544	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.289474
X	77827557	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0645161
X	77827570	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.0526316
X	77827624	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.1
X	77827712	A->G	-	ENSG00000102158	MAGT1	protein_coding	three_prime_utr	.	.	Alu	0.3
1	78642508	A->G	+	ENSG00000137959	IFI44L	protein_coding	three_prime_utr	.	.	Alu	0.151899
10	80521735	A->G	+	ENSG00000108219	TSPAN14	protein_coding	three_prime_utr	.	.	Alu	0.0714286
10	80521766	A->G	+	ENSG00000108219	TSPAN14	protein_coding	three_prime_utr	.	.	Alu	0.0571429
2	85319250	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0588235
2	85319275	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0289855
2	85319334	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0909091
2	85319342	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0625
2	85319347	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0416667
2	85319351	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0833333
2	85319394	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	85319449	A->G	-	ENSG00000152291	TGOLN2	protein_coding	three_prime_utr	.	.	Alu	0.0769231
2	85610227	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	85610232	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.153846
2	85610674	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.133333
2	85610675	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.2
2	85610702	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.35
2	85610727	A->G	-	ENSG00000168887	C2orf68	protein_coding	three_prime_utr	.	.	Alu	0.166667
2	86140869	A->G	+	ENSG00000132300	PTCD3	protein_coding	three_prime_utr	.	.	Alu	0.166667
16	87884640	A->G	+	ENSG00000174990	CA5A	protein_coding	three_prime_utr	.	.	Alu	1
16	87884655	A->G	+	ENSG00000174990	CA5A	protein_coding	three_prime_utr	.	.	Alu	1
1	89182578	A->G	-	ENSG00000162654	GBP4	protein_coding	three_prime_utr	.	.	Alu	0.4
15	90083261	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0625
15	90083277	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.0588235
15	90083297	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.5
15	90083360	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.285714
15	90083406	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.181818
15	90083422	A->G	-	ENSG00000182054	IDH2	protein_coding	three_prime_utr	.	.	Alu	0.153846
11	94416057	A->G	-	ENSG00000020922	MRE11	protein_coding	three_prime_utr	.	.	Alu	0.2
1	94976011	A->G	-	ENSG00000172339	ALG14	protein_coding	three_prime_utr	.	.	Alu	1
9	96891622	A->G	-	ENSG00000196312	MFSD14C	protein_coding	three_prime_utr	.	.	Alu	0.133333
9	96891645	A->G	-	ENSG00000196312	MFSD14C	protein_coding	three_prime_utr	.	.	Alu	0.111111
8	97727366	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.133333
8	97727380	A->G	+	ENSG00000147649	MTDH	protein_coding	three_prime_utr	.	.	Alu	0.133333
15	99387172	A->G	-	ENSG00000168904	LRRC28	protein_coding	three_prime_utr	.	.	Alu	0.5
15	99387225	A->G	-	ENSG00000168904	LRRC28	protein_coding	three_prime_utr	.	.	Alu	0.142857
10	100232437	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.297297
10	100232502	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.181818
10	100232510	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.263158
10	100232524	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.25
10	100232550	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.769231
10	100232551	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.846154
10	100232557	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.333333
10	100232668	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.222222
10	100232677	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.0666667
10	100232926	A->G	-	ENSG00000095485	CWF19L1	protein_coding	three_prime_utr	.	.	Alu	0.190476
14	100280966	A->G	+	ENSG00000259052	AL157871.6	sense_overlapping	three_prime_utr	.	.	Alu	0.555556
14	100280981	A->G	+	ENSG00000259052	AL157871.6	sense_overlapping	three_prime_utr	.	.	Alu	0.625
7	101091517	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.5
7	101091531	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.333333
7	101091540	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.111111
7	101091556	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.153846
7	101091571	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.2
7	101091606	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.3
7	101091607	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.8
7	101091612	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.272727
7	101093709	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.666667
7	101093710	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.666667
7	101093715	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.125
7	101095124	A->G	+	ENSG00000169871	TRIM56	protein_coding	three_prime_utr	.	.	Alu	0.103448
14	102037171	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.3125
14	102037176	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.333333
14	102037222	A->G	+	ENSG00000258959	AL118558.1	transcribed_unitary_pseudogene	three_prime_utr	.	.	Alu	0.1875
7	102450004	A->G	+	ENSG00000160991	ORAI2	protein_coding	three_prime_utr	.	.	Alu	0.0769231
4	106042564	A->G	-	ENSG00000145348	TBCK	protein_coding	three_prime_utr	.	.	Alu	1
12	108910167	A->G	-	ENSG00000166111	SVOP	protein_coding	three_prime_utr	.	.	Alu	0.857143
6	111557769	A->G	+	ENSG00000056972	TRAF3IP2	protein_coding	three_prime_utr	.	.	Alu	1
6	111557770	A->G	+	ENSG00000056972	TRAF3IP2	protein_coding	three_prime_utr	.	.	Alu	1
2	113205434	A->G	+	ENSG00000125637	PSD4	protein_coding	three_prime_utr	.	.	Alu	0.846154
2	113205444	A->G	+	ENSG00000125637	PSD4	protein_coding	three_prime_utr	.	.	Alu	1
2	113205453	A->G	+	ENSG00000125637	PSD4	protein_coding	three_prime_utr	.	.	Alu	0.75
12	121002946	A->G	-	ENSG00000157895	C12orf43	protein_coding	three_prime_utr	.	.	Alu	0.133333
12	122728881	A->G	-	ENSG00000196917	HCAR1	protein_coding	three_prime_utr	.	.	Alu	1
12	123411605	A->G	-	ENSG00000150977	RILPL2	protein_coding	three_prime_utr	.	.	Alu	0.2
12	123661809	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.2
12	123661824	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.181818
12	123661849	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.3
12	123661870	A->G	+	ENSG00000111358	GTF2H3	protein_coding	three_prime_utr	.	.	Alu	0.3
12	125029417	A->G	+	ENSG00000184992	BRI3BP	protein_coding	three_prime_utr	.	.	Alu	0.0952381
2	127845418	A->G	-	ENSG00000144231	POLR2D	protein_coding	three_prime_utr	.	.	Alu	0.363636
2	128192901	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.0952381
2	128192917	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.5
2	128192923	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.714286
2	128192924	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.642857
2	128192941	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.363636
2	128193506	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.764706
2	128193520	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.333333
2	128193521	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.6875
2	128193533	A->G	+	ENSG00000136731	UGGT1	protein_coding	three_prime_utr	.	.	Alu	0.692308
3	129129512	A->G	-	ENSG00000240682	ISY1	protein_coding	three_prime_utr	.	.	Alu	0.0909091
9	129827882	A->G	-	ENSG00000136819	C9orf78	protein_coding	three_prime_utr	.	.	Alu	0.0566038
9	129827883	A->G	-	ENSG00000136819	C9orf78	protein_coding	three_prime_utr	.	.	Alu	0.0566038
9	129889390	A->G	-	ENSG00000187239	FNBP1	protein_coding	three_prime_utr	.	.	Alu	1
5	131201445	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.2
5	131201461	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.3
5	131201598	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	0.3
5	131201599	A->G	+	ENSG00000186687	LYRM7	protein_coding	three_prime_utr	.	.	Alu	1
3	141947445	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.116279
3	141947450	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0810811
3	141947457	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.0909091
3	141947482	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.25
3	141947483	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.210526
3	141947553	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.571429
3	141947579	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.2
3	141947583	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.4
3	141947588	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.217391
3	141949870	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.166667
3	141949872	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.235294
3	141949877	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.352941
3	141949878	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.411765
3	141949900	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.142857
3	141949905	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.181818
3	141949916	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.25
3	141949931	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.384615
3	141949932	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.384615
3	141949946	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.214286
3	141949972	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.272727
3	141949978	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.153846
3	141949986	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.272727
3	141949989	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.636364
3	141950057	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	141950079	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.111111
3	141950080	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.666667
3	141950096	A->G	-	ENSG00000114126	TFDP2	protein_coding	three_prime_utr	.	.	Alu	0.85
6	149591103	A->G	+	ENSG00000055211	GINM1	protein_coding	three_prime_utr	.	.	Alu	0.166667
6	149591171	A->G	+	ENSG00000055211	GINM1	protein_coding	three_prime_utr	.	.	Alu	0.111111
5	150364978	A->G	-	ENSG00000070814	TCOF1	protein_coding	three_prime_utr	.	.	Alu	0.3
6	156936123	A->G	+	ENSG00000049618	ARID1B	protein_coding	three_prime_utr	.	.	Alu	0.181818
1	160998100	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.6
1	160998109	A->G	-	ENSG00000158769	F11R	protein_coding	three_prime_utr	.	.	Alu	0.3
4	165075163	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.2
4	165075168	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.333333
4	165075200	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.117647
4	165075212	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.2
4	165075214	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.6
4	165075217	A->G	-	ENSG00000170088	TMEM192	protein_coding	three_prime_utr	.	.	Alu	0.2
2	171322558	A->G	+	ENSG00000123600	METTL8	protein_coding	three_prime_utr	.	.	Alu	0.727273
5	181237178	A->G	-	ENSG00000204628	RACK1	protein_coding	three_prime_utr	.	.	Alu	0.133333
3	183672907	A->G	+	ENSG00000114796	KLHL24	protein_coding	three_prime_utr	.	.	Alu	0.117647
3	196353657	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.0967742
3	196353660	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.114286
3	196353690	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.0512821
3	196353729	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.2
3	196353751	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.103448
3	196353753	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	1
3	196353759	A->G	-	ENSG00000163960	UBXN7	protein_coding	three_prime_utr	.	.	Alu	0.117647
2	200978506	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.3
2	200978572	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.7
2	200978587	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.5
2	200978741	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.846154
2	200978742	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.285714
2	200978747	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.785714
2	200978748	A->G	-	ENSG00000155744	FAM126B	protein_coding	three_prime_utr	.	.	Alu	0.857143
2	238244831	A->G	+	ENSG00000132326	PER2	protein_coding	three_prime_utr	.	.	Alu	1
2	238244836	A->G	+	ENSG00000132326	PER2	protein_coding	three_prime_utr	.	.	Alu	1